Psyllid ID: psy8288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MQSIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccHHcHHHHHHcccccccEEEEEcccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccEEEEEEHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHcccccEEcccccccccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MQSIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMlgdngvflfptfinsahYHYQIHYKFLNYGYVGLFnllempvtnvtvglgsnklpvgFQVSLALVTSKAV
Flexible Loop (DISEMBL)
MQSIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKaadcfsqrkIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV
Low Complexity Region (SEG)
MQSIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV
Disordered region (IsUnstruct)
*******SNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALV*****
Disordered Region (DISOPRED)
**SIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALV*****
Disordered Region (DISEMBL)
MQSIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV
Disordered Region (DISPRO)
**SIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSIQVSSNLIFVYLNFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q6GMR7	532	Fatty-acid amide hydrolas	yes	N/A	0.621	0.206	0.333	2e-12
Q05AM4	526	Fatty-acid amide hydrolas	yes	N/A	0.446	0.150	0.367	1e-10
Q6DH69	532	Fatty-acid amide hydrolas	no	N/A	0.610	0.203	0.279	9e-10

>sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FAAH2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)

Query: 57  EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
           E++KW +  S +T  ++   ++++    +S  K     A ++ L K+  DMLGD+GVFL+
Sbjct: 393 ELIKWCLGLSVYTIPSIGLALLEEKLR-YSNEKYQKFKAVEESLRKELVDMLGDDGVFLY 451

Query: 117 PTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           P+    A  H+    +  N+ Y G+F+ L +PVT   +GL +  LP+G QV
Sbjct: 452 PSHPTVAPKHHVPLTRPFNFAYTGVFSALGLPVTQCPLGLNAKGLPLGIQV 502

Degrades bioactive fatty acid amides like oleamide, the endogenous cannabinoid, anandamide and myristic amide to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Hydrolyzes monounsaturated substrate anandamide preferentially as compared to polyunsaturated substrates.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9

>sp|Q05AM4|FAH2B_DANRE Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=faah2b PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query: 93  LLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNV 152
           +L +K+DL ++  D+LG +GV L+P+    A  H+   +   N+ Y G+ N+L +PVT  
Sbjct: 422 ILKQKEDLQREMEDLLGTDGVLLYPSHPLLAPKHHHPLFMPFNFSYTGILNILGLPVTQC 481

Query: 153 TVGLGSNKLPVGFQVSLAL 171
            +GL   +LP+G QV   L
Sbjct: 482 PLGLSKERLPLGVQVVAGL 500

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 9

>sp|Q6DH69|FAH2A_DANRE Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=faah2a PE=2 SV=1

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 57  EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
           E+ KW +  S  T   +   +++      S      ++ +K+ L ++  ++LG +GV L+
Sbjct: 391 ELFKWFLGFSSHTLAAIGLALVELFQ---SSHPSPFIMQQKESLQQELEELLGTDGVLLY 447

Query: 117 PTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           P+    A  H+   +   N+ Y G+FN+L +PVT   +GL +  LP+G Q+
Sbjct: 448 PSHPLIAQKHHHPIFTPFNFSYTGIFNILGLPVTQCPLGLSAEGLPLGVQI 498

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
307178089	934	Fatty-acid amide hydrolase 2 [Camponotus	0.677	0.128	0.375	3e-19
307192601	475	Fatty-acid amide hydrolase 2 [Harpegnath	0.661	0.246	0.384	1e-18
45550774	552	CG5191, isoform B [Drosophila melanogast	0.649	0.208	0.382	6e-17
383864475	542	PREDICTED: fatty-acid amide hydrolase 2-	0.627	0.204	0.414	8e-17
195449724	533	GK22453 [Drosophila willistoni] gi|19416	0.649	0.215	0.373	2e-16
194899749	528	GG23956 [Drosophila erecta] gi|190651123	0.649	0.217	0.382	2e-16
195498219	528	GE25669 [Drosophila yakuba] gi|194182531	0.649	0.217	0.382	2e-16
195158928	530	GL13563 [Drosophila persimilis] gi|19411	0.649	0.216	0.382	2e-16
195353966	528	GM23118 [Drosophila sechellia] gi|194127	0.649	0.217	0.382	2e-16
195569436	522	GD19357 [Drosophila simulans] gi|1941986	0.649	0.220	0.382	3e-16

>gi|307178089|gb|EFN66916.1| Fatty-acid amide hydrolase 2 [Camponotus floridanus]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 73/120 (60%)

Query: 48  QVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDM 107
           Q  S SV  E LK++ F S      + +G++K  ++  S  K + LL  +  L ++F+++
Sbjct: 343 QKKSKSVLVETLKYIFFMSPHPFPAICFGIMKNISEQLSLSKYNKLLEMRMRLKQQFKEL 402

Query: 108 LGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           LGDNGV +FP+F + AHY ++  Y   NY Y+ +FN+L +PVT   +G   N+LP+G Q+
Sbjct: 403 LGDNGVLIFPSFTSPAHYPHESLYNVCNYTYMMMFNMLGLPVTQCPLGFNKNQLPLGLQI 462

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192601|gb|EFN75789.1| Fatty-acid amide hydrolase 2 [Harpegnathos saltator]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 74/117 (63%)

Query: 51  SHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGD 110
           S +V  EVLK++ F S +T   +LYG++K   + F +   + ++ KK  L K+F + LG 
Sbjct: 320 SKNVLFEVLKYIFFLSSYTYPALLYGLLKSTGERFPRSYYNNMMEKKTQLKKQFEETLGS 379

Query: 111 NGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           NGV ++P+F++SA Y ++I Y   N+ Y+ +FN L +PVT   +G   N+LP+G Q+
Sbjct: 380 NGVLIYPSFVSSAPYPHEIIYNACNFTYLMIFNALGLPVTQCPLGFDRNQLPIGLQI 436

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45550774|ref|NP_650893.2| CG5191, isoform B [Drosophila melanogaster] gi|45446562|gb|AAG22162.3| CG5191, isoform B [Drosophila melanogaster] gi|162951737|gb|ABY21730.1| IP13792p [Drosophila melanogaster]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct: 395 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 454

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 455 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 509

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864475|ref|XP_003707704.1| PREDICTED: fatty-acid amide hydrolase 2-like [Megachile rotundata]

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 68/111 (61%)

Query: 57  EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
           E LK +   S  + + V YG+++      S    + ++ KK  L K+F D+LGDNGV ++
Sbjct: 398 EFLKLIFHVSLRSLSFVCYGMVRWVNTKRSTAYHNKVVEKKTSLKKQFEDLLGDNGVLIY 457

Query: 117 PTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           PTFI  AHY YQ + K  N+ Y+ ++N+L +PVT   VGL SN LP+G Q+
Sbjct: 458 PTFIAPAHYKYQAYSKVANFTYLMIYNVLGLPVTQCPVGLNSNGLPIGVQI 508

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195449724|ref|XP_002072196.1| GK22453 [Drosophila willistoni] gi|194168281|gb|EDW83182.1| GK22453 [Drosophila willistoni]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F+++LG++G
Sbjct: 371 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKELLGNDG 430

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 431 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 485

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194899749|ref|XP_001979420.1| GG23956 [Drosophila erecta] gi|190651123|gb|EDV48378.1| GG23956 [Drosophila erecta]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct: 371 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 430

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 431 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 485

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195498219|ref|XP_002096430.1| GE25669 [Drosophila yakuba] gi|194182531|gb|EDW96142.1| GE25669 [Drosophila yakuba]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct: 371 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 430

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 431 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 485

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158928|ref|XP_002020335.1| GL13563 [Drosophila persimilis] gi|194117104|gb|EDW39147.1| GL13563 [Drosophila persimilis]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct: 354 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 413

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 414 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDHRNLPMGIQV 468

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195353966|ref|XP_002043472.1| GM23118 [Drosophila sechellia] gi|194127613|gb|EDW49656.1| GM23118 [Drosophila sechellia]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct: 371 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 430

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 431 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 485

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195569436|ref|XP_002102715.1| GD19357 [Drosophila simulans] gi|194198642|gb|EDX12218.1| GD19357 [Drosophila simulans]

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query: 53  SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
           +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct: 365 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 424

Query: 113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
           VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct: 425 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 479

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
FB|FBgn0038803	552	CG5191 [Drosophila melanogaste	0.649	0.208	0.382	4.5e-17
FB|FBgn0037548	536	CG7900 [Drosophila melanogaste	0.627	0.207	0.342	1.6e-13
FB|FBgn0033717	529	CG8839 [Drosophila melanogaste	0.621	0.207	0.371	2e-13
WB|WBGene00013164	535	Y53F4B.18 [Caenorhabditis eleg	0.723	0.239	0.307	3.1e-12
UNIPROTKB|Q6GMR7	532	FAAH2 "Fatty-acid amide hydrol	0.621	0.206	0.333	3.9e-12
ZFIN|ZDB-GENE-061027-358	526	faah2b "fatty acid amide hydro	0.627	0.211	0.293	4.6e-11
FB|FBgn0039341	523	CG5112 [Drosophila melanogaste	0.604	0.204	0.333	7.5e-11
ZFIN|ZDB-GENE-040718-453	532	faah2a "fatty acid amide hydro	0.604	0.201	0.285	7.2e-10
FB|FBgn0037547	530	CG7910 [Drosophila melanogaste	0.655	0.218	0.262	0.0002

FB|FBgn0038803 CG5191 [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 44/115 (38%), Positives = 69/115 (60%)

Query:    53 SVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNG 112
             +V KE +K+    S     +V++G ++         +   L +  + L  +F++MLG++G
Sbjct:   395 TVCKETVKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEMLGNDG 454

Query:   113 VFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
             VFL+PTF N+AH HYQI++K L   Y+ +FN L +PVTN  +GL    LP+G QV
Sbjct:   455 VFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDRRNLPMGIQV 509

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS

FB|FBgn0037548 CG7900 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/111 (34%), Positives = 64/111 (57%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
             E++K +   SK+TT  +++ ++++     SQ KI+  + + ++L+ +F ++LGDNGV LF
Sbjct:   392 EIVKSVRGHSKYTTNALIFELMRRTGAFMSQSKINQYMKETRELIGEFENLLGDNGVLLF 451

Query:   117 PTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
             PT    A  H           Y  +FN+L +PVT+V +GL    LP+G  V
Sbjct:   452 PTLNLPAPRHKWSILSLWGVDYTLMFNVLGLPVTHVPMGLNERGLPIGLSV 502

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

FB|FBgn0033717 CG8839 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 42/113 (37%), Positives = 63/113 (55%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADC-FSQRKIDTLLAKKKDLMKKFRDMLGDNGVFL 115
             E+ KW   +SK T    L   I  +A C     K D L+ K+ +L ++ + +LGDNGV +
Sbjct:   387 ELFKWFFGASKHTFIG-LSTAIMDSAQCKHGSPKYDHLVRKRNELREELQSLLGDNGVLI 445

Query:   116 FPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVG-LGSNKLPVGFQV 167
             +PT    A YH +   + +N+ Y G+ N+L  P T V +G LGS  LP+G Q+
Sbjct:   446 YPTHPTVAPYHNEPITRPINFAYTGIVNVLGFPATAVPLGKLGSEGLPLGVQI 498

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

WB|WBGene00013164 Y53F4B.18 [Caenorhabditis elegans (taxid:6239)]

 Score = 173 (66.0 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/130 (30%), Positives = 69/130 (53%)

Query:    40 YRMLTLCFQVWSHSVT--KEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKK 97
             +  L LC +     V    E+ K++  +S  T + ++ G+I      FS+     LL K+
Sbjct:   376 FNKLMLCTKGTKGEVNCFTEIFKYMAGNSNHTLSGIVAGIIDSRDPPFSEAHTKNLLYKR 435

Query:    98 KDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLG 157
               L ++ +++LG +G+ LFP++  +A YH +      N+ Y  L+N+L +PV    +GL 
Sbjct:   436 DRLKRQVKELLGTDGILLFPSWPCTAMYHNEPILAPFNFCYTALWNVLSVPVVQCPLGLD 495

Query:   158 SNKLPVGFQV 167
             S  LP+G QV
Sbjct:   496 SRGLPLGVQV 505

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6GMR7 FAAH2 "Fatty-acid amide hydrolase 2" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 37/111 (33%), Positives = 63/111 (56%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
             E++KW +  S +T  ++   ++++    +S  K     A ++ L K+  DMLGD+GVFL+
Sbjct:   393 ELIKWCLGLSVYTIPSIGLALLEEKLR-YSNEKYQKFKAVEESLRKELVDMLGDDGVFLY 451

Query:   117 PTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
             P+    A  H+    +  N+ Y G+F+ L +PVT   +GL +  LP+G QV
Sbjct:   452 PSHPTVAPKHHVPLTRPFNFAYTGVFSALGLPVTQCPLGLNAKGLPLGIQV 502

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-061027-358 faah2b "fatty acid amide hydrolase 2b" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
             E++K +   S+ T   +   +++ +    S +  + +L +K+DL ++  D+LG +GV L+
Sbjct:   389 ELIKRIFGRSEHTVAAIGLALMESS---HSSKSSEFILKQKEDLQREMEDLLGTDGVLLY 445

Query:   117 PTF-INSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLAL 171
             P+  + +  +H+ +   F N+ Y G+ N+L +PVT   +GL   +LP+G QV   L
Sbjct:   446 PSHPLLAPKHHHPLFMPF-NFSYTGILNILGLPVTQCPLGLSKERLPLGVQVVAGL 500

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0039341 CG5112 [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 37/111 (33%), Positives = 60/111 (54%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
             E+ K ++  S ++   + YG+I        ++ +    AK K   K  +D+LGD+GV  F
Sbjct:   385 ELFKKILGQSDYSMAAI-YGLIDSVLPKEKEKLMREATAKCK---KSVQDLLGDDGVLFF 440

Query:   117 PTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
              +   +A +HY    KF ++ Y  LFN+L +P T V +GL S  +P+G QV
Sbjct:   441 HSSPRTAPFHYYPLVKFNDFAYFSLFNVLHLPATQVPMGLDSKGMPLGIQV 491

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-040718-453 faah2a "fatty acid amide hydrolase 2a" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 32/112 (28%), Positives = 61/112 (54%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
             E+ KW +  S  T   +   +++      S      ++ +K+ L ++  ++LG +GV L+
Sbjct:   391 ELFKWFLGFSSHTLAAIGLALVELFQ---SSHPSPFIMQQKESLQQELEELLGTDGVLLY 447

Query:   117 PTF-INSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV 167
             P+  + +  +H+ I   F N+ Y G+FN+L +PVT   +GL +  LP+G Q+
Sbjct:   448 PSHPLIAQKHHHPIFTPF-NFSYTGIFNILGLPVTQCPLGLSAEGLPLGVQI 498

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0037547 CG7910 [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
 Identities = 32/122 (26%), Positives = 54/122 (44%)

Query:    57 EVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLF 116
             E+   ++  S FT   ++  V+K+     +   ++    + + +      +LG  GV + 
Sbjct:   388 ELFNSIIGHSIFTKEAMVLEVMKRFNGLMATGNMEEYRVEAQKIKSHLNQLLGTQGVLIM 447

Query:   117 PTFINSAHYHYQIHYKFLNYGYVG---LFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVT 173
             PTF  SA      H   LN   +    LFN+L +P T+V +G     +P+G QV  A   
Sbjct:   448 PTFHTSA---LCFHTSLLNVTGIDNLLLFNILGLPATHVPMGTNQRGMPIGLQVVAAQYQ 504

Query:   174 SK 175
              K
Sbjct:   505 DK 506


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       177   0.00084  109 3  11 22  0.44    31
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.55u 0.12s 16.67t   Elapsed:  00:00:00
  Total cpu time:  16.55u 0.12s 16.67t   Elapsed:  00:00:00
  Start:  Thu Aug 15 13:59:57 2013   End:  Thu Aug 15 13:59:57 2013

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PRK06529	482	amidase; Provisional	99.84
PRK06102	452	hypothetical protein; Provisional	99.84
PRK06169	466	putative amidase; Provisional	99.83
PRK07235	502	amidase; Provisional	99.83
PRK07042	464	amidase; Provisional	99.83
PRK06061	483	amidase; Provisional	99.83
PRK05962	424	amidase; Validated	99.82
PRK07056	454	amidase; Provisional	99.82
PLN02722	422	indole-3-acetamide amidohydrolase	99.81
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	99.81
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	99.81
PRK08186	600	allophanate hydrolase; Provisional	99.81
PRK06170	490	amidase; Provisional	99.81
PRK07487	469	amidase; Provisional	99.8
PRK08310	395	amidase; Provisional	99.8
PRK07869	468	amidase; Provisional	99.8
PRK07486	484	amidase; Provisional	99.79
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	99.79
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	99.79
PRK07488	472	indole acetimide hydrolase; Validated	99.79
PRK12470	462	amidase; Provisional	99.78
PRK09201	465	amidase; Provisional	99.77
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	99.77
PRK08137	497	amidase; Provisional	99.76
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	99.76
PRK07139	439	amidase; Provisional	99.75
PRK06828	491	amidase; Provisional	99.58
KOG1212|consensus	560		99.52
PRK06707	536	amidase; Provisional	99.45
PRK11910	615	amidase; Provisional	99.37
PRK06565	566	amidase; Validated	99.15
KOG1211|consensus	506		99.03

>PRK06529 amidase; Provisional

Probab=99.84  E-value=1.2e-20  Score=168.14  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc------------------
Q psy8288          71 TTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK------------------  132 (177)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~------------------  132 (177)
                      ....+.+.+.+ ..++..+|.++++.|.++++++.++|+++|+||+||+|.+||+++.....                  
T Consensus       333 ~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (482)
T PRK06529        333 ETMTWAIYQSG-QDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQ  411 (482)
T ss_pred             CHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhh
Confidence            34444444443 46889999999999999999999999999999999999999988641100                  


Q ss_pred             -----------ccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         133 -----------FLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       133 -----------~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                                 .....||.+||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus       412 ~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l  467 (482)
T PRK06529        412 QNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLL  467 (482)
T ss_pred             hhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHH
Confidence                       011348999999999999999999889999999999999999753

>PRK06102 hypothetical protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=166.12  Aligned_cols=157  Identities=13%  Similarity=0.072  Sum_probs=107.6

Q ss_pred             cccHHHHHHhhCcccchhhhHHHHHhhh--h-hhhhccchhHHHHHHHHHh-cCCCCChhhHHHHHHHHhcccCCHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFIYRML--T-LCFQVWSHSVTKEVLKWLM-FSSKFTTTTVLYGVIKKAADCFSQRKID   91 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~--~-~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~   91 (177)
                      +.+++.++++|+.+.+++++........  . ..+..  . +.....+... ......+.+..+..++.+ ..++..+|.
T Consensus       270 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~  345 (452)
T PRK06102        270 EAAVERLQAAGALVERQAFPAFQEILDLIARHGWLVT--A-EAFALHQERLDGPDAARMDPRVVKRTRLG-RKITASDYI  345 (452)
T ss_pred             HHHHHHHHhCCCEEEecCCccHHHHHHHHHHHHHHHH--H-HHHHHHHHHhhccchhhCCHHHHHHHHhc-cCCCHHHHH
Confidence            4567788888998877666543221110  0 00000  1 1111111111 111123444455555553 578899999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc--c------cccccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288          92 TLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH--Y------KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPV  163 (177)
Q Consensus        92 ~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~--~------~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv  163 (177)
                      ++...++++++++.++|+ +|+||+||+|.+||+++...  .      ......||.+||++|+|++|||+|++.+|||+
T Consensus       346 ~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPv  424 (452)
T PRK06102        346 ALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPV  424 (452)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCE
Confidence            999999999999999999 89999999999999886421  0      01113579999999999999999998899999


Q ss_pred             eeEEEcCCCCCCCC
Q psy8288         164 GFQVSLALVTSKAV  177 (177)
Q Consensus       164 GvQlvg~~~~D~~l  177 (177)
                      ||||+|++++|+.|
T Consensus       425 GlQivg~~~~D~~l  438 (452)
T PRK06102        425 GLLLSAPAGRDERL  438 (452)
T ss_pred             EEEEECCCCCHHHH
Confidence            99999999999753

>PRK06169 putative amidase; Provisional

Probab=99.83  E-value=2.6e-20  Score=165.37  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=89.9

Q ss_pred             ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc--cc-----ccccccchh
Q psy8288          69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH--YK-----FLNYGYVGL  141 (177)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~--~~-----~~~~~~t~~  141 (177)
                      .+.+..+..++.+ ..++..+|.++.+.++++++.+.++|+++|+||+||+|.+||+++...  ..     .....||.+
T Consensus       331 ~~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~  409 (466)
T PRK06169        331 LLDPGLRRIAERG-ATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYP  409 (466)
T ss_pred             hcCHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhccccc
Confidence            3455555566654 578999999999999999999999999999999999999999886421  00     011358999


Q ss_pred             hhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         142 FNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       142 ~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      ||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus       410 ~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~l  445 (466)
T PRK06169        410 FNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLV  445 (466)
T ss_pred             ccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHH
Confidence            999999999999999889999999999999999753

>PRK07235 amidase; Provisional

Probab=99.83  E-value=2.2e-20  Score=167.18  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=80.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---c----c-cccccchhhhhcCCCeeeeecC
Q psy8288          84 CFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---K----F-LNYGYVGLFNLLEMPVTNVTVG  155 (177)
Q Consensus        84 ~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~----~-~~~~~t~~~Nl~G~PaisvP~g  155 (177)
                      .++..+|.++++.+++++++++++|+++|+||+||+|.+||+++....   .    . ....||.+||++|+|++|||+|
T Consensus       390 ~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g  469 (502)
T PRK07235        390 RYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCG  469 (502)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECC
Confidence            367789999999999999999999999999999999999998864210   0    0 1234799999999999999999


Q ss_pred             CCCCCCceeeEEEcCCCCCCCC
Q psy8288         156 LGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       156 ~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      + .+||||||||+|++++|+.|
T Consensus       470 ~-~~GlPvGlQlvg~~~~D~~l  490 (502)
T PRK07235        470 L-VDGLPVGLMLVGRHFDEATI  490 (502)
T ss_pred             c-CCCCCeEEEEeCCCCCHHHH
Confidence            9 48999999999999999753

>PRK07042 amidase; Provisional

Probab=99.83  E-value=3.9e-20  Score=164.14  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=87.3

Q ss_pred             hhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc------ccccccccchhhhh
Q psy8288          71 TTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH------YKFLNYGYVGLFNL  144 (177)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~------~~~~~~~~t~~~Nl  144 (177)
                      .+.....++.+ ..++..+|.++...+.++++++.++|+++|+||+||+|.+||+++...      .......||.+||+
T Consensus       330 ~~~~~~~~~~g-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl  408 (464)
T PRK07042        330 LPYIRRWAEGG-ADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNM  408 (464)
T ss_pred             CHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhcccccccceec
Confidence            34444445543 578899999999999999999999999999999999999999886311      01112458999999


Q ss_pred             cCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         145 LEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       145 ~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      +|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus       409 ~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l  441 (464)
T PRK07042        409 SEQPAASINCGFTRDGLPIGLQIVGPRFDDLGV  441 (464)
T ss_pred             cCCCeEEeecCcCCCCCCeEEEEecCCCcHHHH
Confidence            999999999999889999999999999999753

>PRK06061 amidase; Provisional

Probab=99.83  E-value=4.1e-20  Score=164.78  Aligned_cols=107  Identities=18%  Similarity=0.156  Sum_probs=89.0

Q ss_pred             hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---c------ccccccch
Q psy8288          70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---K------FLNYGYVG  140 (177)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~------~~~~~~t~  140 (177)
                      +.+.++..++.+ ..++..+|.++++.|+++++.+.++|+++|+||+||+|.+||++++...   .      .....||.
T Consensus       342 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~  420 (483)
T PRK06061        342 LDPRTVSNARMG-RLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTW  420 (483)
T ss_pred             CCHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccc
Confidence            445555555553 5688999999999999999999999999999999999999998864210   0      01235899


Q ss_pred             hhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         141 LFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       141 ~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      +||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus       421 ~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~L  457 (483)
T PRK06061        421 PWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLL  457 (483)
T ss_pred             cccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHH
Confidence            9999999999999999889999999999999999753

>PRK05962 amidase; Validated

Probab=99.82  E-value=6.3e-20  Score=161.18  Aligned_cols=159  Identities=9%  Similarity=0.035  Sum_probs=106.2

Q ss_pred             cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA   95 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~   95 (177)
                      +.+++.++++|+.+++.+++..................+..+..+.+.......+.+..+..+..+ ..++..+|.+++.
T Consensus       244 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a~~  322 (424)
T PRK05962        244 EASLAALEKAGARIADLAIDDLIARLAEATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRR-IKVPLEAYHRLMR  322 (424)
T ss_pred             HHHHHHHHHCCCEEEEeccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhc-cCCCHHHHHHHHH
Confidence            456778888898887766654221111000000000011111222222222223444445555543 4788999999999


Q ss_pred             HHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc------cc--ccccchhhhhcCCCeeeeecCCCCCCCceeeEE
Q psy8288          96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK------FL--NYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV  167 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~------~~--~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQl  167 (177)
                      .|.++++.+.++|+++|+||+||+|.+||+++.....      ..  ...||.++|++|+|++|||+|.  +|+|+||||
T Consensus       323 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~--~glPvGlql  400 (424)
T PRK05962        323 TRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG--MALPAGLML  400 (424)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC--CCCCEEEEE
Confidence            9999999999999999999999999999988642110      00  1248999999999999999984  599999999


Q ss_pred             EcCCCCCCCC
Q psy8288         168 SLALVTSKAV  177 (177)
Q Consensus       168 vg~~~~D~~l  177 (177)
                      +|++++|+.|
T Consensus       401 vg~~~~D~~l  410 (424)
T PRK05962        401 TARNGSDRRL  410 (424)
T ss_pred             ECCCCCHHHH
Confidence            9999999753

>PRK07056 amidase; Provisional

Probab=99.82  E-value=6.7e-20  Score=162.24  Aligned_cols=157  Identities=15%  Similarity=0.090  Sum_probs=107.8

Q ss_pred             cccHHHHHHhhCcccchhhhHHHHHhhhh--hhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFIYRMLT--LCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTL   93 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a   93 (177)
                      ..+++.++++|+.+++++++.........  ......+   .....+.+.......+.+..+..++.+ ..++..+|.++
T Consensus       274 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a  349 (454)
T PRK07056        274 ERALKRLSAAGAIIEEIAFPELAELAEINAKGGFSAAE---SYAWHRPLLARHRDQYDPRVAARILRG-EPMSAADYIDL  349 (454)
T ss_pred             HHHHHHHHHCCCEEEEecCcchHHHHHHHHhhhHHHHH---HHHHHHHHHhhhhhhCCHHHHHHHHcC-CCCCHHHHHHH
Confidence            44677888889888776665422111110  0011111   111122222222223445555555554 57889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---cc-----cccccchhhhhcCCCeeeeecCCCCCCCceee
Q psy8288          94 LAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---KF-----LNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGF  165 (177)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~~-----~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGv  165 (177)
                      +..|.++++++.++|+++|+||+||+|.+||+++....   ..     ....||.+||++|+|++|||+|. .+|+|+||
T Consensus       350 ~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~-~~glPvGl  428 (454)
T PRK07056        350 LAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPCHA-PGEAPVGL  428 (454)
T ss_pred             HHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchhcCCCEEEEeCCC-CCCCCEEE
Confidence            99999999999999999999999999999998865210   00     11247899999999999999996 67999999


Q ss_pred             EEEcCCCCCCCC
Q psy8288         166 QVSLALVTSKAV  177 (177)
Q Consensus       166 Qlvg~~~~D~~l  177 (177)
                      ||+|++++|+.|
T Consensus       429 qivg~~~~D~~l  440 (454)
T PRK07056        429 MLAGAPGRDDRL  440 (454)
T ss_pred             EEECCCCCHHHH
Confidence            999999999753

>PLN02722 indole-3-acetamide amidohydrolase

Probab=99.81  E-value=1.3e-19  Score=159.24  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=89.9

Q ss_pred             ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc--c---cccccchhhh
Q psy8288          69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK--F---LNYGYVGLFN  143 (177)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~--~---~~~~~t~~~N  143 (177)
                      .+.+..+..++.+ ..++..+|.++++.|.++++++.++|+++|+||+||+|.+||+++.....  .   ....+|.++|
T Consensus       300 ~~~~~v~~~~~~g-~~~s~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~n  378 (422)
T PLN02722        300 EFGPGISERIWEA-VRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAG  378 (422)
T ss_pred             hCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhccc
Confidence            4566666677764 57899999999999999999999999999999999999999988642110  0   1235789999


Q ss_pred             hcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         144 LLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       144 l~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      ++|+|++|||+|.+ +|||+||||+|++++|+.|
T Consensus       379 l~G~PaisvP~g~~-~glPvGlqivg~~~~D~~l  411 (422)
T PLN02722        379 VSGFCQVSIPLGLH-DNLPVSVSLLAKHGSDGFL  411 (422)
T ss_pred             ccCCCEEEEeCCCC-CCCCEEEEEECCCCChHHH
Confidence            99999999999985 7999999999999999753

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=99.81  E-value=1.4e-19  Score=163.88  Aligned_cols=158  Identities=18%  Similarity=0.193  Sum_probs=109.6

Q ss_pred             ccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHHH
Q psy8288          17 FSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLAK   96 (177)
Q Consensus        17 ~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~~   96 (177)
                      .+++.++++|+.+++++++.........+.. .+ ..+..+.++......+..+.+.++.+++.+ ..++..+|.+++++
T Consensus       239 ~a~~~L~~~G~~v~~v~~~~~~~~~~~l~~~-~~-~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g-~~~sa~~~~~a~~~  315 (561)
T TIGR02713       239 AAVERLEALGVEVVEIDFAPFLETAALLYEG-PW-VAERYAAVGEFVEAQPDALDPVVRGIITSA-TRFSAADAFAAQYR  315 (561)
T ss_pred             HHHHHHHHCCCEEEEecchhHHHHHHHHHHH-HH-HHHHHHHHHHHHhhChhhcCHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence            4667788889988776665432221111100 00 011122222222222334556666666664 57899999999999


Q ss_pred             HHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc----cccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCC
Q psy8288          97 KKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALV  172 (177)
Q Consensus        97 ~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~  172 (177)
                      ++++++++.++|+++|+||+||+|.+++..+....    ......||.++|++|+|+++||+|+..+|||+||||+|+++
T Consensus       316 r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~  395 (561)
T TIGR02713       316 LAALRRKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAF  395 (561)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCCCchhccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCC
Confidence            99999999999999999999999998753321100    01113589999999999999999998899999999999999


Q ss_pred             CCCCC
Q psy8288         173 TSKAV  177 (177)
Q Consensus       173 ~D~~l  177 (177)
                      +|+.|
T Consensus       396 ~D~~L  400 (561)
T TIGR02713       396 HDAAL  400 (561)
T ss_pred             ChHHH
Confidence            99753

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=6e-20  Score=163.40  Aligned_cols=161  Identities=15%  Similarity=0.102  Sum_probs=108.3

Q ss_pred             ecccHHHHHHhhCcccchhhhHHHH-HhhhhhhhhccchhHHHHHHHH--HhcCCCCChhhHHHHHHHHhcccCCHHHHH
Q psy8288          15 LNFSLDWFRALLAGVFDMELKRLFI-YRMLTLCFQVWSHSVTKEVLKW--LMFSSKFTTTTVLYGVIKKAADCFSQRKID   91 (177)
Q Consensus        15 ~~~a~~~~~~~~a~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   91 (177)
                      +..++++++++|+.+++++++.+.. +....+ ...............  ........+.+.....+..+ ..++..+|.
T Consensus       283 ~~~a~~~l~~~Ga~v~~v~lp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G-~~~~~~~~~  360 (475)
T COG0154         283 FEAAVKALEAAGAEVVEVSLPLLSDDYALAAY-YLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLG-TYLLSAGYY  360 (475)
T ss_pred             HHHHHHHHHHCCCEEEeccCCchhhhhhhhHH-HHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhcc-ccccchHHH
Confidence            4568899999999999888884443 221111 000000000000000  00000112333333344442 467788898


Q ss_pred             HHHHHHHHH---HHHHHHHhcCCCEEEcCCCCcCcccccc-cc---c---cccccccchhhhhcCCCeeeeecCCCCCCC
Q psy8288          92 TLLAKKKDL---MKKFRDMLGDNGVFLFPTFINSAHYHYQ-IH---Y---KFLNYGYVGLFNLLEMPVTNVTVGLGSNKL  161 (177)
Q Consensus        92 ~a~~~~~~~---~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~-~~---~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GL  161 (177)
                      .+...+.+.   ++++.++|+++|+||+||+|.+||++++ ..   .   ......||.++|++|+|++|||+|++.+||
T Consensus       361 ~a~~~~~~~~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~Gl  440 (475)
T COG0154         361 DAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGL  440 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCC
Confidence            888888555   9999999999999999999999999986 11   1   111246799999999999999999988899


Q ss_pred             ceeeEEEcCCCCCCCC
Q psy8288         162 PVGFQVSLALVTSKAV  177 (177)
Q Consensus       162 PvGvQlvg~~~~D~~l  177 (177)
                      |+||||+|++|+|..|
T Consensus       441 PvGlqlig~~~~d~~L  456 (475)
T COG0154         441 PVGLQLIGPAFDDATL  456 (475)
T ss_pred             CeeEEEecCCCCHHHH
Confidence            9999999999999754

>PRK08186 allophanate hydrolase; Provisional

Probab=99.81  E-value=1.4e-19  Score=164.97  Aligned_cols=158  Identities=18%  Similarity=0.210  Sum_probs=109.9

Q ss_pred             cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA   95 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~   95 (177)
                      +.+++.++++|+.+++++++.........+.. .+. .+....++.+.......+.+..+.+++.+ ..++..+|.+++.
T Consensus       275 ~~a~~~L~~~G~~v~ei~~~~~~~~~~~~~~~-~~~-ae~~~~~~~~~~~~~~~~~p~~~~~i~~g-~~~sa~~~~~a~~  351 (600)
T PRK08186        275 AAALARLEALGAELVEIDFSPFLEAARLLYEG-PWV-AERYAAVGEFLEAHPDAVDPVVRGIIAGA-AAFSAADAFRALY  351 (600)
T ss_pred             HHHHHHHHHcCCeEEEecchhHHHHHHHHHHH-HHH-HHHHHHHHHHHhhChhhcCHHHHHHHHhC-cCCCHHHHHHHHH
Confidence            35667789999988877666443221111100 001 11122222222222234455666666654 5789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc-----cccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcC
Q psy8288          96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY-----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLA  170 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~-----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~  170 (177)
                      +++++++++.++|+++|+||+||+|.+++ +.+...     ......||.++|++|+|+++||+|+..+|||+||||+|+
T Consensus       352 ~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~  430 (600)
T PRK08186        352 RLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAP  430 (600)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcC
Confidence            99999999999999999999999999875 322110     111124899999999999999999989999999999999


Q ss_pred             CCCCCCC
Q psy8288         171 LVTSKAV  177 (177)
Q Consensus       171 ~~~D~~l  177 (177)
                      +++|+.|
T Consensus       431 ~~~D~~L  437 (600)
T PRK08186        431 AFADQAL  437 (600)
T ss_pred             CCCHHHH
Confidence            9999753

>PRK06170 amidase; Provisional

Probab=99.81  E-value=7.1e-20  Score=163.37  Aligned_cols=95  Identities=23%  Similarity=0.329  Sum_probs=82.1

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---------c-----ccccccchhhhhcCCC
Q psy8288          83 DCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---------K-----FLNYGYVGLFNLLEMP  148 (177)
Q Consensus        83 ~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---------~-----~~~~~~t~~~Nl~G~P  148 (177)
                      ..++..+|.++...|.++++++.++|+++|+||+||+|.+||+++....         .     ...+.||.+||++|+|
T Consensus       363 ~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~P  442 (490)
T PRK06170        363 AVLSHRDWLFADAAREELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLP  442 (490)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCC
Confidence            4678999999999999999999999999999999999999998864210         0     0113578899999999


Q ss_pred             eeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         149 VTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       149 aisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      ++|||+|++.+|||+||||+|++++|+.|
T Consensus       443 aisvP~g~~~~GlPvGlQlig~~~~D~~L  471 (490)
T PRK06170        443 ATAIPIGLSATGLPVGVQIVGPALEDRTP  471 (490)
T ss_pred             eEEEECCcCCCCCceeEEEecCCCCHHHH
Confidence            99999999889999999999999999754

>PRK07487 amidase; Provisional

Probab=99.80  E-value=2.9e-19  Score=158.80  Aligned_cols=158  Identities=14%  Similarity=0.029  Sum_probs=103.6

Q ss_pred             cccHHHHHHhhCcccch-hhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDM-ELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLL   94 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~   94 (177)
                      ..+++.++++|+.++++ +++.........+....  .+....+.+.........+........+.+ ..++..+|.+++
T Consensus       281 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~  357 (469)
T PRK07487        281 RDAARRLEDAGWTVEEVDDTPPLREAAELQERLWL--GDGYEALLAAAEAEGDPGALAALRGQRAKA-RPLDLAGYMNAL  357 (469)
T ss_pred             HHHHHHHHHCCCEEEecCCCCchHHHHHHHHHHHH--HHHHHHHHHHHHhhchhhhhHHHHHHHHhc-cCCCHHHHHHHH
Confidence            34667788889887665 55543221111110111  111111111111111112333343444443 468899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc--c-----cccccchhhhhcCCCeeeeecCCCCCCCceeeEE
Q psy8288          95 AKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK--F-----LNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQV  167 (177)
Q Consensus        95 ~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~--~-----~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQl  167 (177)
                      +.++++++++.++|+++|+||+||+|.+||+++.....  .     ....+|.++|++|+|++|||+|++ +|||+||||
T Consensus       358 ~~r~~~~~~~~~~~~~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlQl  436 (469)
T PRK07487        358 ARRATLTRQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLV-GGVPVGVQL  436 (469)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccC-CCcceeEEE
Confidence            99999999999999999999999999999988642110  0     011246789999999999999985 699999999


Q ss_pred             EcCCCCCCCC
Q psy8288         168 SLALVTSKAV  177 (177)
Q Consensus       168 vg~~~~D~~l  177 (177)
                      +|++++|+.|
T Consensus       437 vg~~~~D~~l  446 (469)
T PRK07487        437 VAGRFREDLC  446 (469)
T ss_pred             eCCCCCHHHH
Confidence            9999999753

>PRK08310 amidase; Provisional

Probab=99.80  E-value=2e-19  Score=156.66  Aligned_cols=106  Identities=11%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc-----ccccccchhhhh
Q psy8288          70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK-----FLNYGYVGLFNL  144 (177)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~-----~~~~~~t~~~Nl  144 (177)
                      +.+..+..++.+ ..++..+|.++.+.|+++++++.++|+++|+||+||++.+||+++.....     .....||.++|+
T Consensus       273 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~  351 (395)
T PRK08310        273 LGPGVADRFAAG-AEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGL  351 (395)
T ss_pred             cCHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehh
Confidence            444455555553 57889999999999999999999999999999999999999988642110     112357999999


Q ss_pred             cCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         145 LEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       145 ~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      +|+|+++||+|. .+|||+||||+|++++|+.|
T Consensus       352 ~G~PaisvP~g~-~~glPvglQivg~~~~D~~l  383 (395)
T PRK08310        352 AGLPQISLPLAS-VDGAPFGLSLIGPRGSDRSL  383 (395)
T ss_pred             cCCCeEEEECCC-CCCCCEEEEEECCCCCHHHH
Confidence            999999999996 68999999999999999753

>PRK07869 amidase; Provisional

Probab=99.80  E-value=3e-19  Score=158.60  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----------ccccccchhhhhcCCCeeeeecC
Q psy8288          86 SQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----------FLNYGYVGLFNLLEMPVTNVTVG  155 (177)
Q Consensus        86 ~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----------~~~~~~t~~~Nl~G~PaisvP~g  155 (177)
                      +..+|.++++.++++++.+.++|+++|+||+||+|.+||+++.....          .....||.++|++|+|++|||+|
T Consensus       350 ~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  429 (468)
T PRK07869        350 NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLG  429 (468)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecC
Confidence            34568888889999999999999999999999999999988642100          01235799999999999999999


Q ss_pred             CCCCCCceeeEEEcCCCCCCCC
Q psy8288         156 LGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       156 ~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      ++.+|||+||||+|++++|+.|
T Consensus       430 ~~~~GlPvGlQivg~~~~D~~l  451 (468)
T PRK07869        430 QSSDGLPVGMMFSADVGDEATL  451 (468)
T ss_pred             cCCCCCCeeEEEecCCCchHHH
Confidence            9889999999999999999753

>PRK07486 amidase; Provisional

Probab=99.79  E-value=2.9e-19  Score=159.25  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=86.6

Q ss_pred             hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc-----c----c-ccccccc
Q psy8288          70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH-----Y----K-FLNYGYV  139 (177)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~-----~----~-~~~~~~t  139 (177)
                      +.+..+..++.+ ..++..+|.+++..|.++++++.++|+++|+||+||+|.+||+++...     .    . .....+|
T Consensus       344 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  422 (484)
T PRK07486        344 LKPEAIWEIEGG-LALTAAQVYEASVIRSAWYQALLRLFERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVV  422 (484)
T ss_pred             cCHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhccc
Confidence            344444455553 578999999999999999999999999999999999999998775310     0    0 0112367


Q ss_pred             hhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         140 GLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       140 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      .+||++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus       423 ~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~l  460 (484)
T PRK07486        423 VPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAV  460 (484)
T ss_pred             ccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHH
Confidence            79999999999999999889999999999999999753

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=99.79  E-value=3.4e-19  Score=157.81  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc----cccccccchhhhhcCCCeeeeecCCCCCCCc
Q psy8288          87 QRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLP  162 (177)
Q Consensus        87 ~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP  162 (177)
                      ...|.++.+.+.++++++.++|+++|+||+||+|.+||+++....    ......||.++|++|+|++|||+|++.+|||
T Consensus       357 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glP  436 (459)
T PRK00012        357 DAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLP  436 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCCCC
Confidence            355888999999999999999999999999999999999864211    1112348999999999999999999888999


Q ss_pred             eeeEEEcCCCCCCCC
Q psy8288         163 VGFQVSLALVTSKAV  177 (177)
Q Consensus       163 vGvQlvg~~~~D~~l  177 (177)
                      +||||+|++++|+.|
T Consensus       437 vGlqlvg~~~~D~~L  451 (459)
T PRK00012        437 VGLQLIGKYFDEETL  451 (459)
T ss_pred             EEEEEECCCCchHHH
Confidence            999999999999754

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=99.79  E-value=2.9e-19  Score=158.27  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc----cccccccchhhhhcCCCeeeeecCCCCCCCc
Q psy8288          87 QRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY----KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLP  162 (177)
Q Consensus        87 ~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~----~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP  162 (177)
                      ..+|.+++..|.++++.+.++|+++|+||+||++.+||+++....    ......||.+||++|+|++|||+|++.+|||
T Consensus       356 ~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~GlP  435 (460)
T TIGR00132       356 DKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLP  435 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCCCC
Confidence            345889999999999999999999999999999999998864211    1111247999999999999999999889999


Q ss_pred             eeeEEEcCCCCCCCC
Q psy8288         163 VGFQVSLALVTSKAV  177 (177)
Q Consensus       163 vGvQlvg~~~~D~~l  177 (177)
                      +||||+|++++|+.|
T Consensus       436 vGlqlig~~~~D~~l  450 (460)
T TIGR00132       436 IGLQIIGKCFDDKTL  450 (460)
T ss_pred             eeEEEECCCCchHHH
Confidence            999999999999754

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK07488 indole acetimide hydrolase; Validated

Probab=99.79  E-value=5.2e-19  Score=157.22  Aligned_cols=94  Identities=17%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             cCCHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccc---------c-ccccccchhhhhcCCCee
Q psy8288          84 CFSQRKIDTLLAK-KKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHY---------K-FLNYGYVGLFNLLEMPVT  150 (177)
Q Consensus        84 ~~~~~~y~~a~~~-~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~---------~-~~~~~~t~~~Nl~G~Pai  150 (177)
                      .++..+|.++++. |.++++.+.++|+  ++|+||+||+|.+||+++....         . .....||.++|++|+|++
T Consensus       348 ~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pai  427 (472)
T PRK07488        348 QISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGL  427 (472)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCCeE
Confidence            5788899999888 9999999999998  6899999999999998864210         0 011347889999999999


Q ss_pred             eeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         151 NVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       151 svP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      |||+|++.+|||+||||+|++++|+.|
T Consensus       428 svP~g~~~~glPvGlqlig~~~~d~~L  454 (472)
T PRK07488        428 SLPAGLTPHGLPVGLELDGPAGSDRRL  454 (472)
T ss_pred             EEecCCCCCCCCeeEEEeCCCCCHHHH
Confidence            999999889999999999999999753

>PRK12470 amidase; Provisional

Probab=99.78  E-value=1.2e-18  Score=154.63  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=85.1

Q ss_pred             ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc---------ccccccc
Q psy8288          69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK---------FLNYGYV  139 (177)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~---------~~~~~~t  139 (177)
                      .+.+..+..++.+ ..++..+|..+..++.++++.+.++|+++|+||+||+|.+||+++.....         .....||
T Consensus       325 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t  403 (462)
T PRK12470        325 RLEARTRAIARLG-SFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYF  403 (462)
T ss_pred             hcCHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcC
Confidence            3445555555654 46777888755555669999999999999999999999999988642110         0123478


Q ss_pred             hhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         140 GLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       140 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      .++|++|+|++|||+|++.+|||+||||+|++++|+.|
T Consensus       404 ~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~L  441 (462)
T PRK12470        404 QVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATL  441 (462)
T ss_pred             ccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHH
Confidence            99999999999999999889999999999999999753

>PRK09201 amidase; Provisional

Probab=99.77  E-value=1.3e-18  Score=154.41  Aligned_cols=107  Identities=12%  Similarity=0.034  Sum_probs=87.7

Q ss_pred             ChhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc---c------cccccccc
Q psy8288          69 TTTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH---Y------KFLNYGYV  139 (177)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~---~------~~~~~~~t  139 (177)
                      .+.+..+..++.+ ..++..+|.++++.|+++++.+.++|+++|+||+||+|.+||+++...   .      ......||
T Consensus       329 ~~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t  407 (465)
T PRK09201        329 DFDPASRDRLLAG-AMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILT  407 (465)
T ss_pred             hcCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhC
Confidence            3445555555554 468999999999999999999999999999999999999999886421   0      01113489


Q ss_pred             hhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         140 GLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       140 ~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      .+||++|+|++|||+|. .+|||+||||+|++++|+.|
T Consensus       408 ~~~nl~G~PaisvP~g~-~~GlPvGlQivg~~~~D~~l  444 (465)
T PRK09201        408 QPISFIGLPVVAVPLRT-PGGLPIGVQLIAAPWREDLA  444 (465)
T ss_pred             ccccccCCCeEEEeCCC-CCCcCeEEEEECCCCCHHHH
Confidence            99999999999999996 57999999999999999754

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=99.77  E-value=2.3e-18  Score=152.35  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=86.5

Q ss_pred             hhhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccc---c------cccccccch
Q psy8288          70 TTTVLYGVIKKAADCFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIH---Y------KFLNYGYVG  140 (177)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~---~------~~~~~~~t~  140 (177)
                      +.+..+..++.+ ..++..+|.++++.|+++++.+.++|+++|+||+||+|.+||+++...   .      ......||.
T Consensus       323 ~~~~~~~~~~~g-~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~  401 (452)
T TIGR02715       323 FDPATRDRLLAG-ALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQ  401 (452)
T ss_pred             cCHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCc
Confidence            344444455543 468899999999999999999999999999999999999999886421   0      011134899


Q ss_pred             hhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCCCC
Q psy8288         141 LFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       141 ~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~~l  177 (177)
                      +||++|+|++|||+|. .+|||+||||+|++++|+.|
T Consensus       402 ~~nl~G~PaisvP~g~-~~glPvGlQivg~~~~D~~l  437 (452)
T TIGR02715       402 PISFAGLPVLAAPLPR-PGRLPIGVQLIAAPWREDLC  437 (452)
T ss_pred             cchhcCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHH
Confidence            9999999999999998 58999999999999999753

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK08137 amidase; Provisional

Probab=99.76  E-value=3.2e-18  Score=153.09  Aligned_cols=93  Identities=18%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             ccCCHHHHHHHHHHHHHH--HHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCC
Q psy8288          83 DCFSQRKIDTLLAKKKDL--MKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGS  158 (177)
Q Consensus        83 ~~~~~~~y~~a~~~~~~~--~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~  158 (177)
                      ..++..+|.+++..++++  ++++.++|+  ++|+||+||++ +||+++..........+|.++|++|+|++|||+|+. 
T Consensus       376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-  453 (497)
T PRK08137        376 PGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-  453 (497)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccccccccccccccHhhCCCeEEEeCCCC-
Confidence            467889999998766655  378999997  68999999999 888886421111223468899999999999999996 


Q ss_pred             CCCceeeEEEcCCCCCCCC
Q psy8288         159 NKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       159 ~GLPvGvQlvg~~~~D~~l  177 (177)
                      +|||+||||+|++++|+.|
T Consensus       454 ~GlPvGvQlig~~~~d~~L  472 (497)
T PRK08137        454 QGLPVGLSFIGAAWSEARL  472 (497)
T ss_pred             CCcCeEEEEECCCCCHHHH
Confidence            8999999999999999753

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=99.76  E-value=9.5e-20  Score=157.20  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----------ccccccchhhhhcCCCeeeeecCCCC
Q psy8288          89 KIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----------FLNYGYVGLFNLLEMPVTNVTVGLGS  158 (177)
Q Consensus        89 ~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----------~~~~~~t~~~Nl~G~PaisvP~g~~~  158 (177)
                      .|.++...+.++++++.++|+++|+||+||++.+||+++.....          .....+|.++|++|+|+++||+|+..
T Consensus       342 ~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~  421 (441)
T PF01425_consen  342 YYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDP  421 (441)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCC
Confidence            38999999999999999999999999999999999998764210          11245779999999999999999988


Q ss_pred             CCCceeeEEEcCCCCCCCC
Q psy8288         159 NKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       159 ~GLPvGvQlvg~~~~D~~l  177 (177)
                      +|||+||||+|++|+|+.|
T Consensus       422 ~GlPvGvqlvg~~~~D~~L  440 (441)
T PF01425_consen  422 DGLPVGVQLVGRPGSDEKL  440 (441)
T ss_dssp             TTEEEEEEEEESTTBHHHH
T ss_pred             CCcCEeEEEECCCCCccCc
Confidence            9999999999999999753

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK07139 amidase; Provisional

Probab=99.75  E-value=4.2e-18  Score=150.30  Aligned_cols=89  Identities=11%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccc-cccc-cchhhhhcCCCeeeeecCCCCCCCceee
Q psy8288          88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKF-LNYG-YVGLFNLLEMPVTNVTVGLGSNKLPVGF  165 (177)
Q Consensus        88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~-~~~~-~t~~~Nl~G~PaisvP~g~~~~GLPvGv  165 (177)
                      .+|.++++.|+++++.+.++|+++|+||+||+|.+||+++...... .... +|.++|++|+|++|||+| ..+|||+||
T Consensus       332 ~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g-~~~glPiGl  410 (439)
T PRK07139        332 KYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLPFNL  410 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhhhcccCcccCCCCeEEEeCC-CCCCCCeEE
Confidence            4589999999999999999999999999999999999886421000 0112 367899999999999999 678999999


Q ss_pred             EEEcCCCCCCCC
Q psy8288         166 QVSLALVTSKAV  177 (177)
Q Consensus       166 Qlvg~~~~D~~l  177 (177)
                      ||+|++++|+.|
T Consensus       411 qivg~~~~D~~L  422 (439)
T PRK07139        411 AIDSKIYDDEKL  422 (439)
T ss_pred             EEECCCCChHHH
Confidence            999999999753

>PRK06828 amidase; Provisional

Probab=99.58  E-value=9.4e-15  Score=130.73  Aligned_cols=78  Identities=13%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             ccCCHHHHHHHHHHHHHHH--HHHHHHhcC--CCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCC
Q psy8288          83 DCFSQRKIDTLLAKKKDLM--KKFRDMLGD--NGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGS  158 (177)
Q Consensus        83 ~~~~~~~y~~a~~~~~~~~--~~~~~~~~~--~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~  158 (177)
                      ..++..+|.++++.+..++  ++++++|++  +|+||+||++..                 .+.|++|+|++|||+|++.
T Consensus       390 ~~~~~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~-----------------~~~~~~GlPaisvP~G~~~  452 (491)
T PRK06828        390 NTLRNPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS-----------------TICAKAGYPSIAIPAGYME  452 (491)
T ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc-----------------cchhhcCCCeEEeecCCCC
Confidence            4678889999998887754  689999985  899999998754                 2357999999999999988


Q ss_pred             CCCceeeEEEcCCCCCCCC
Q psy8288         159 NKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       159 ~GLPvGvQlvg~~~~D~~l  177 (177)
                      +|||+||||+|++|+|..|
T Consensus       453 ~GlPvGlQlig~~~~D~~L  471 (491)
T PRK06828        453 GGRPFGITLASTAFSEGTL  471 (491)
T ss_pred             CCcCeEEEEECCCCCHHHH
Confidence            9999999999999999753

>KOG1212|consensus

Probab=99.52  E-value=1.4e-14  Score=129.82  Aligned_cols=87  Identities=28%  Similarity=0.359  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecC--------------
Q psy8288          90 IDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVG--------------  155 (177)
Q Consensus        90 y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g--------------  155 (177)
                      +.....+..+++........+.||||||+++.|||+|+.+.....++.||.+||++|+||.+||++              
T Consensus       427 ~~~~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~  506 (560)
T KOG1212|consen  427 QNYEDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPM  506 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhccccccc
Confidence            333444444445555556678999999999999999998766667889999999999997777764              


Q ss_pred             ------------CCCCCCceeeEEEcCCCCCCC
Q psy8288         156 ------------LGSNKLPVGFQVSLALVTSKA  176 (177)
Q Consensus       156 ------------~~~~GLPvGvQlvg~~~~D~~  176 (177)
                                  .+..|||+|||+||.+++|+.
T Consensus       507 ~D~~~~~~~~g~~~s~GlPigVQVVa~p~~del  539 (560)
T KOG1212|consen  507 NDKWATKVPKGSLDSRGLPIGVQVVANPNQDEL  539 (560)
T ss_pred             ccHHHHhCcccccCCCCCceeEEEecCCCchHH
Confidence                        445799999999999999985

>PRK06707 amidase; Provisional

Probab=99.45  E-value=5.5e-13  Score=120.47  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCCCceeeEEE
Q psy8288          91 DTLLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVS  168 (177)
Q Consensus        91 ~~a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlv  168 (177)
                      ..+...+..+++.++++|+  ++|+||+|..                 ..|.++|++|+|++|||+|++.+|+|+|+||+
T Consensus       446 ~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~-----------------~~t~~an~aG~PaitvP~G~~~~GlP~Glqli  508 (536)
T PRK06707        446 KVVQTSQENAKKELDRYLVEKGLDALVMINN-----------------EEVLLSAVAGYPELAVPAGYDNNGEPVGAVFV  508 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCEEEecCC-----------------CcchhhHhcCCCeEEEecccCCCCCCeEEEEE
Confidence            3445567778888999998  8999999731                 12678999999999999999889999999999


Q ss_pred             cCCCCCCCC
Q psy8288         169 LALVTSKAV  177 (177)
Q Consensus       169 g~~~~D~~l  177 (177)
                      |++|+|..|
T Consensus       509 g~~~~e~~L  517 (536)
T PRK06707        509 GKQFGEKEL  517 (536)
T ss_pred             CCCCChHHH
Confidence            999999754

>PRK11910 amidase; Provisional

Probab=99.37  E-value=4.8e-12  Score=115.49  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCC-CCCceeeEEEc
Q psy8288          93 LLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGS-NKLPVGFQVSL  169 (177)
Q Consensus        93 a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~-~GLPvGvQlvg  169 (177)
                      +...++.+++.++++|+  ++|+||+|+...             ..  ....+++|+|++|||+|++. +|+|+||||+|
T Consensus       523 ~~~~~~~~~~~l~~~~~~~~lDalv~P~~~~-------------~~--~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG  587 (615)
T PRK11910        523 ASNLIQSSQNELDSVLQKDKLDAVVTIGMGG-------------SV--MFLAPIAGNPELTIPAGYDEESNQPISLTFIT  587 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcEEEeCCCCC-------------cc--hhhhhhcCCCeEEecccCCCCCCcCeEEEEEC
Confidence            44556667788999996  799999997311             01  12345999999999999986 79999999999


Q ss_pred             CCCCCCCC
Q psy8288         170 ALVTSKAV  177 (177)
Q Consensus       170 ~~~~D~~l  177 (177)
                      ++|+|+.|
T Consensus       588 ~~~sE~~L  595 (615)
T PRK11910        588 ARNSDKIL  595 (615)
T ss_pred             CCCCHHHH
Confidence            99999754

>PRK06565 amidase; Validated

Probab=99.15  E-value=7e-11  Score=107.14  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHH-HHHHHhcC--CCEEEcCCCCcCccccccccccc--------cccccchh-hhhcCCCeeeeecCC
Q psy8288          89 KIDTLLAKKKDLMK-KFRDMLGD--NGVFLFPTFINSAHYHYQIHYKF--------LNYGYVGL-FNLLEMPVTNVTVGL  156 (177)
Q Consensus        89 ~y~~a~~~~~~~~~-~~~~~~~~--~Dvll~Pt~~~~Ap~~~~~~~~~--------~~~~~t~~-~Nl~G~PaisvP~g~  156 (177)
                      .|.++++.++..++ .++++|..  .|+||+|+.+..+|..+......        .....+.. .+++|+|+||||+|+
T Consensus       442 ~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~  521 (566)
T PRK06565        442 TLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGV  521 (566)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccc
Confidence            44555556666665 57788865  58899999999888765421110        01233444 489999999999998


Q ss_pred             C-CCCCceeeEEEcCCCCCCCC
Q psy8288         157 G-SNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       157 ~-~~GLPvGvQlvg~~~~D~~l  177 (177)
                      . +.|+|+||+|+|+.|+|..|
T Consensus       522 ~~~~G~PvGl~~~G~a~~e~~L  543 (566)
T PRK06565        522 MADIGMPVGLTFAGRAYDDNAL  543 (566)
T ss_pred             cCCCCCCeeEEeecCCcchHHH
Confidence            7 57999999999999999754

>KOG1211|consensus

Probab=99.03  E-value=3.9e-10  Score=100.49  Aligned_cols=85  Identities=19%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHH---HHhcCCCEEEcCCCCcCccccccc----cccccccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288          91 DTLLAKKKDLMKKFR---DMLGDNGVFLFPTFINSAHYHYQI----HYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPV  163 (177)
Q Consensus        91 ~~a~~~~~~~~~~~~---~~~~~~Dvll~Pt~~~~Ap~~~~~----~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv  163 (177)
                      .+|.+.++-.+.++.   +.+++.|+|+.||.+.+.....+.    ........++.+.|+.|+|++++|+|+..+|+|+
T Consensus       391 ~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~  470 (506)
T KOG1211|consen  391 EKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPI  470 (506)
T ss_pred             HHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCce
Confidence            445555555555566   678899999999944333322221    0112235678999999999999999999999999


Q ss_pred             eeEEEcCCCCCC
Q psy8288         164 GFQVSLALVTSK  175 (177)
Q Consensus       164 GvQlvg~~~~D~  175 (177)
                      |+|++|..++|.
T Consensus       471 glqi~g~~~~e~  482 (506)
T KOG1211|consen  471 GLQIMGGAFAEP  482 (506)
T ss_pred             EEEeecccccch
Confidence            999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	99.86
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	99.85
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	99.83
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	99.81
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	99.8
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	99.8
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	99.79
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	99.78
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	99.76
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	99.74

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=99.86  E-value=6e-22  Score=175.53  Aligned_cols=160  Identities=14%  Similarity=0.091  Sum_probs=112.8

Q ss_pred             cccHHHHHHhhCcccchhhhHHH--HHhhhhhhhhccchhHHHHHHHHHhcC--CCCChhhHHHHHHHHhcccCCHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLF--IYRMLTLCFQVWSHSVTKEVLKWLMFS--SKFTTTTVLYGVIKKAADCFSQRKID   91 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~y~   91 (177)
                      ..+++.++++|+.+++++++...  ............+.....+.+....+.  ....+.+..+..++.+ ..++..+|.
T Consensus       282 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~  360 (493)
T 3a2q_A          282 RGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRA-DQVTGRAFA  360 (493)
T ss_dssp             HHHHHHHHHTTCEEEECCCGGGGCCTHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHH-HTCCHHHHH
T ss_pred             HHHHHHHHHCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhh-ccCCHHHHH
Confidence            44677889999998766555211  011111111111111111222333332  2234566666666664 578999999


Q ss_pred             HHHHHHHHHHHHHHHHh-cCCCEEEcCCCCcCcccccccccc---------------c-cccccchhhhhcCCCeeeeec
Q psy8288          92 TLLAKKKDLMKKFRDML-GDNGVFLFPTFINSAHYHYQIHYK---------------F-LNYGYVGLFNLLEMPVTNVTV  154 (177)
Q Consensus        92 ~a~~~~~~~~~~~~~~~-~~~Dvll~Pt~~~~Ap~~~~~~~~---------------~-~~~~~t~~~Nl~G~PaisvP~  154 (177)
                      ++++.+.++++++.++| +++|+||+||++.+||+++.....               . ....||.+||++|+|++|||+
T Consensus       361 ~a~~~r~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~  440 (493)
T 3a2q_A          361 ACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPI  440 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccC
Confidence            99999999999999999 999999999999999998753211               0 114689999999999999999


Q ss_pred             CCCCCCCceeeEEEcCCCCCCC
Q psy8288         155 GLGSNKLPVGFQVSLALVTSKA  176 (177)
Q Consensus       155 g~~~~GLPvGvQlvg~~~~D~~  176 (177)
                      |++.+|||+||||+|++++|+.
T Consensus       441 g~~~~GlPvGvQlvg~~~~d~~  462 (493)
T 3a2q_A          441 GMSSDGMPIGVQIVAAYGREDL  462 (493)
T ss_dssp             EECTTSCEEEEEEEESTTCHHH
T ss_pred             CcCCCCCCeEEEEecCCCChHH
Confidence            9988999999999999999975

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=99.85  E-value=1.4e-21  Score=170.03  Aligned_cols=154  Identities=15%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             cccHHHHHHhhCcccchhhhHHHH-HhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFI-YRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLL   94 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~   94 (177)
                      ..+++.++++|+.+++++++.... ...........   +....+..........+.+..+..++.+ ..++..+|.+++
T Consensus       244 ~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a~  319 (414)
T 1o9p_A          244 QAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDF---EAHRALAWEFSEHHDEIAPMLRASLDAT-VGLTPKEYDEAR  319 (414)
T ss_dssp             HHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHH---HHHHHTHHHHHHSGGGSCHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEecCcchHHHHHHHHHHHHHH---HHHHHHHHHHHhChhhcCHHHHHHHHhc-cCCCHHHHHHHH
Confidence            456788899999988776653321 11111111111   1111111111111123445555556654 578999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCC
Q psy8288          95 AKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTS  174 (177)
Q Consensus        95 ~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D  174 (177)
                      +.++++++++.++|+++|+||+||++.+||+++...  .....||.+||++|+|++|||+|++. |||+||||+|++++|
T Consensus       320 ~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d  396 (414)
T 1o9p_A          320 RIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGND  396 (414)
T ss_dssp             HHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCCh
Confidence            999999999999999999999999999999986521  12347899999999999999999877 999999999999999


Q ss_pred             CC
Q psy8288         175 KA  176 (177)
Q Consensus       175 ~~  176 (177)
                      +.
T Consensus       397 ~~  398 (414)
T 1o9p_A          397 AH  398 (414)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=99.83  E-value=1.4e-21  Score=170.91  Aligned_cols=155  Identities=15%  Similarity=0.057  Sum_probs=107.3

Q ss_pred             cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA   95 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~   95 (177)
                      +.+++.++++|+.+++++++ .............   .+....+..........+.+..+..++.+ ..++..+|.++++
T Consensus       258 ~~a~~~L~~~G~~v~~~~~p-~~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~a~~  332 (434)
T 2dc0_A          258 TRLLEDLPALRAEVREVSLP-LEGVYEVYTRLVR---YEAARIHEKALKEHPEGFSPQVREALLAG-LALTEKDYRDAVA  332 (434)
T ss_dssp             HHHHHHTTTTTCEEEECCCC-CTTHHHHHHHHHH---HHHHHHSHHHHHHCGGGSCHHHHHHHHHH-HHSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEeCCC-cHHHHHHHHHHHH---HHHHHHHHHHHHhchhhcCHHHHHHHHhc-CCCCHHHHHHHHH
Confidence            45667778889888776655 2111111111111   11111111111111123444455555553 5789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc-----c---ccc-cccchhhhhcCCCeeeeecCCCCCCCceeeE
Q psy8288          96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY-----K---FLN-YGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQ  166 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~-----~---~~~-~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQ  166 (177)
                      .++++++++.++|+++|+||+||+|.+||+++....     .   ... ..||.+||++|+|++|||+|+ .+|||+|||
T Consensus       333 ~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvq  411 (434)
T 2dc0_A          333 EREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQ  411 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEE
Confidence            999999999999999999999999999999875421     0   011 568999999999999999999 899999999


Q ss_pred             EEcCCCCCCC
Q psy8288         167 VSLALVTSKA  176 (177)
Q Consensus       167 lvg~~~~D~~  176 (177)
                      |+|++++|+.
T Consensus       412 lvg~~~~d~~  421 (434)
T 2dc0_A          412 VVGAYGEDGK  421 (434)
T ss_dssp             EECCTTCHHH
T ss_pred             EECCCCchHH
Confidence            9999999974

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=99.81  E-value=1.3e-20  Score=168.15  Aligned_cols=92  Identities=16%  Similarity=0.145  Sum_probs=80.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc--------ccccccchhhhhcCCCeeeeecC
Q psy8288          84 CFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK--------FLNYGYVGLFNLLEMPVTNVTVG  155 (177)
Q Consensus        84 ~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~--------~~~~~~t~~~Nl~G~PaisvP~g  155 (177)
                      .++..+|.++++.+.+++++++++|+++|+||+||+|.+||+++.....        .....||.+||++|+|++|||+|
T Consensus       390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  469 (521)
T 3a1k_A          390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG  469 (521)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence            4667799999999999999999999999999999999999998753110        01246799999999999999999


Q ss_pred             CCCCCCceeeEEEcCCCCCCC
Q psy8288         156 LGSNKLPVGFQVSLALVTSKA  176 (177)
Q Consensus       156 ~~~~GLPvGvQlvg~~~~D~~  176 (177)
                      + .+|||+||||+|++|+|+.
T Consensus       470 ~-~~GlPvGlQlvg~~~~d~~  489 (521)
T 3a1k_A          470 L-VNGLPVGMMITGRHFDDAT  489 (521)
T ss_dssp             E-ETTEEEEEEEECSTTCHHH
T ss_pred             c-CCCCCeeEEEEcCCCCHHH
Confidence            9 7899999999999999975

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=99.80  E-value=1.7e-20  Score=165.56  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---cccccccchhhhhcCCCeeeeecCCCCCCCc
Q psy8288          86 SQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLP  162 (177)
Q Consensus        86 ~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLP  162 (177)
                      +..+|.++++.+.++++++.++|+++|+||+||+|.+||+++....   ......||.+||++|+|++|||+|+ .+|||
T Consensus       354 ~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlP  432 (471)
T 3kfu_E          354 YEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLP  432 (471)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCC
Confidence            3457999999999999999999999999999999999999875321   0112348999999999999999999 89999


Q ss_pred             eeeEEEcCCCCCCC
Q psy8288         163 VGFQVSLALVTSKA  176 (177)
Q Consensus       163 vGvQlvg~~~~D~~  176 (177)
                      +||||+|++++|+.
T Consensus       433 vGlQlvg~~~~D~~  446 (471)
T 3kfu_E          433 VGLQLLAPWGEDER  446 (471)
T ss_dssp             EEEEEECSTTCHHH
T ss_pred             eEEEEECCCCCHHH
Confidence            99999999999975

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=99.80  E-value=2e-20  Score=165.08  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccc---cccccccccchhhhhcCCCeeeeecCCCCCCCcee
Q psy8288          88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQI---HYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVG  164 (177)
Q Consensus        88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~---~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvG  164 (177)
                      .+|.++++.|.+++++++++|+++|+||+||+|.+||+++..   ........||.++|++|+|++|||+|++ +|||+|
T Consensus       359 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvG  437 (476)
T 2gi3_A          359 AYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVG  437 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeE
Confidence            478899999999999999999999999999999999998751   1111224689999999999999999985 899999


Q ss_pred             eEEEcCCCCCCC
Q psy8288         165 FQVSLALVTSKA  176 (177)
Q Consensus       165 vQlvg~~~~D~~  176 (177)
                      |||+|++++|+.
T Consensus       438 vqlvg~~~~d~~  449 (476)
T 2gi3_A          438 VQVIGRRFADGK  449 (476)
T ss_dssp             EEEECCTTCHHH
T ss_pred             EEEEcCCCCHHH
Confidence            999999999975

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=99.79  E-value=4e-20  Score=163.38  Aligned_cols=88  Identities=15%  Similarity=0.052  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccc----cccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288          88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKF----LNYGYVGLFNLLEMPVTNVTVGLGSNKLPV  163 (177)
Q Consensus        88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~----~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv  163 (177)
                      .+|.++++.|.++++++.++|+++|+||+||+|.+||+++......    ....||.+||++|+|++|||+|+ .+|||+
T Consensus       366 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPv  444 (478)
T 3h0l_A          366 AYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPV  444 (478)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCe
Confidence            4688999999999999999999999999999999999987642111    11258999999999999999999 889999


Q ss_pred             eeEEEcCCCCCCC
Q psy8288         164 GFQVSLALVTSKA  176 (177)
Q Consensus       164 GvQlvg~~~~D~~  176 (177)
                      ||||+|++++|+.
T Consensus       445 GlQlvg~~~~D~~  457 (478)
T 3h0l_A          445 GGQLIGKHWDETT  457 (478)
T ss_dssp             EEEEEECTTCHHH
T ss_pred             EEEEECCCCCHHH
Confidence            9999999999975

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=99.78  E-value=7.2e-20  Score=161.94  Aligned_cols=88  Identities=18%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----ccccccchhhhhcCCCeeeeecCCCCCCCce
Q psy8288          88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----FLNYGYVGLFNLLEMPVTNVTVGLGSNKLPV  163 (177)
Q Consensus        88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPv  163 (177)
                      .+|.++++.|.++++++.++|+++|+||+||+|.+||+++.....    .....||.+||++|+|++|||+|++ +|||+
T Consensus       373 ~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPv  451 (485)
T 3ip4_A          373 AYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPI  451 (485)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCE
Confidence            458899999999999999999999999999999999998763211    1123589999999999999999996 89999


Q ss_pred             eeEEEcCCCCCCC
Q psy8288         164 GFQVSLALVTSKA  176 (177)
Q Consensus       164 GvQlvg~~~~D~~  176 (177)
                      ||||+|++++|+.
T Consensus       452 Glqlvg~~~~d~~  464 (485)
T 3ip4_A          452 GLQFIGKPFDEKT  464 (485)
T ss_dssp             EEEEECSTTCHHH
T ss_pred             eEEEEcCCCCHHH
Confidence            9999999999975

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=99.76  E-value=7.3e-19  Score=158.29  Aligned_cols=94  Identities=20%  Similarity=0.096  Sum_probs=79.7

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCC---
Q psy8288          83 DCFSQRKIDTLLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLG---  157 (177)
Q Consensus        83 ~~~~~~~y~~a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~---  157 (177)
                      ...+..+|+++..++.++++++.+.|+  ++|+||||+ +.+|++|+..........||.+||++|+|+++||+|+.   
T Consensus       431 ~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~  509 (573)
T 3ppm_A          431 RPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAE  509 (573)
T ss_dssp             SBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccccchhhhhHhhCCCeEEEeccccccc
Confidence            467889999999999999999999996  599999999 55888887532222346899999999999999999864   


Q ss_pred             --------------------------CCCCceeeEEEcCCCCCCCC
Q psy8288         158 --------------------------SNKLPVGFQVSLALVTSKAV  177 (177)
Q Consensus       158 --------------------------~~GLPvGvQlvg~~~~D~~l  177 (177)
                                                .+|+||||||||++++|++|
T Consensus       510 ~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEkl  555 (573)
T 3ppm_A          510 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELC  555 (573)
T ss_dssp             HHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHH
T ss_pred             ccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHH
Confidence                                      37999999999999999753

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=99.74  E-value=1.1e-18  Score=155.06  Aligned_cols=90  Identities=13%  Similarity=0.040  Sum_probs=74.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHH--HHHHhcC--CCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCC
Q psy8288          84 CFSQRKIDTLLAKKKDLMKK--FRDMLGD--NGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSN  159 (177)
Q Consensus        84 ~~~~~~y~~a~~~~~~~~~~--~~~~~~~--~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~  159 (177)
                      .++..+|.++++.+++++++  +.++|++  +|+||+||+ .++|+++... ......||.+||++|+|++|||+|++ +
T Consensus       379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~-~~~~~~~t~~~nl~G~PaisvP~g~~-~  455 (503)
T 1m22_A          379 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEG-DDFPGESYSAAAVAGYPSLTVPMGQI-D  455 (503)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC----CCTTCCHHHHHHHTCCEEEEEEEEE-T
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCccccccc-CcccccccccchhhCCCeEEeccccC-C
Confidence            57888999999999988876  9999985  899999999 4666665221 11125689999999999999999985 8


Q ss_pred             CCceeeEEEcCCCCCCC
Q psy8288         160 KLPVGFQVSLALVTSKA  176 (177)
Q Consensus       160 GLPvGvQlvg~~~~D~~  176 (177)
                      |||+||||+|++|+|+.
T Consensus       456 GlPvGvqlvg~~~~d~~  472 (503)
T 1m22_A          456 GLPVGLLFMGTAWSEPK  472 (503)
T ss_dssp             TEEEEEEEECSTTCHHH
T ss_pred             CCCeEEEEECCCCChHH
Confidence            99999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	3e-04
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	0.003

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 101 MKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYG---YVGLFNLLEMPVTNVTVGLG 157
             +  ++L      L PT   +A    +I      Y    +    NL  +P  +V  G  
Sbjct: 371 SDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF- 429

Query: 158 SNKLPVGFQV 167
           SN LPVG QV
Sbjct: 430 SNNLPVGVQV 439

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 101 MKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNK 160
            ++  ++     V L  +   +A           +  Y  L+ L+  P  NV V      
Sbjct: 326 RRELGEVFEGVDVLLTYSAPGTAPAKALAST--GDPRYNRLWTLMGNPCVNVPVL-KVGG 382

Query: 161 LPVGFQV 167
           LP+G QV
Sbjct: 383 LPIGVQV 389

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	99.85
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	99.79
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	99.76
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	99.75
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	99.68

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.85  E-value=5e-22  Score=168.38  Aligned_cols=155  Identities=14%  Similarity=0.106  Sum_probs=111.3

Q ss_pred             cccHHHHHHhhCcccchhhhHHHHHhhhhhhhhccchhHHHHHHHHHhcCCCCChhhHHHHHHHHhcccCCHHHHHHHHH
Q psy8288          16 NFSLDWFRALLAGVFDMELKRLFIYRMLTLCFQVWSHSVTKEVLKWLMFSSKFTTTTVLYGVIKKAADCFSQRKIDTLLA   95 (177)
Q Consensus        16 ~~a~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~a~~   95 (177)
                      ..+++.++++|+.+++.+.+.....-....  ......+....++.........+.+..+...+.+ ..++..+|.+++.
T Consensus       244 ~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~  320 (412)
T d1ocka_         244 QAAIKAAERAGASVQAIDLPEAVHEAWRIH--PIIQDFEAHRALAWEFSEHHDEIAPMLRASLDAT-VGLTPKEYDEARR  320 (412)
T ss_dssp             HHHHHHHHHTTCEEEECCCCHHHHHHHHHH--HHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHT-TTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccchhhhhhhhh--hhhhhHHHHHHHHHhhccccccchhhhhhhhhhh-hccccccchhhhh
Confidence            457788899999997666554332211111  0001112222222222222223455566666664 6889999999999


Q ss_pred             HHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCCCceeeEEEcCCCCCC
Q psy8288          96 KKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVGFQVSLALVTSK  175 (177)
Q Consensus        96 ~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvGvQlvg~~~~D~  175 (177)
                      .+.++++++.++|+++|+||+||+|.+||.++..  ...+..||.+||++|+|++|||+|. .+|||+||||+|++++|+
T Consensus       321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~--~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQiig~~~~D~  397 (412)
T d1ocka_         321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALA--STGDPRYNRLWTLMGNPCVNVPVLK-VGGLPIGVQVIARFGNDA  397 (412)
T ss_dssp             HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGC--CCCCCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEEECTTCHH
T ss_pred             hHHHHHHHHHHHHcCCCEEEeCCCCCCCcccccc--ccCChHHhHHHHHHCCCeEEEeccC-CCCceEeEEEECCCCCHH
Confidence            9999999999999999999999999999877542  2234568999999999999999985 899999999999999997


Q ss_pred             C
Q psy8288         176 A  176 (177)
Q Consensus       176 ~  176 (177)
                      .
T Consensus       398 ~  398 (412)
T d1ocka_         398 H  398 (412)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.9e-19  Score=157.29  Aligned_cols=93  Identities=20%  Similarity=0.092  Sum_probs=79.3

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCC----
Q psy8288          83 DCFSQRKIDTLLAKKKDLMKKFRDMLG--DNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGL----  156 (177)
Q Consensus        83 ~~~~~~~y~~a~~~~~~~~~~~~~~~~--~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~----  156 (177)
                      ...+..+|.++..++..+++.+.+.|+  ++|+||+||++ ++++++..........||.+||++|+|++|||+|+    
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~~~~~~~T~~~NllG~PaisvP~g~v~~~  479 (537)
T d1mt5a_         401 RPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAE  479 (537)
T ss_dssp             SCCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC-SCCCSSCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCC-CccCcCChhhhhcccchHHHHHHhCCCeEEEEcCccccc
Confidence            467889999999999999999999997  58999999998 55566544333445689999999999999999997    


Q ss_pred             -------------------------CCCCCceeeEEEcCCCCCCC
Q psy8288         157 -------------------------GSNKLPVGFQVSLALVTSKA  176 (177)
Q Consensus       157 -------------------------~~~GLPvGvQlvg~~~~D~~  176 (177)
                                               +.+||||||||+|++|+|+.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~  524 (537)
T d1mt5a_         480 DDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEEL  524 (537)
T ss_dssp             TTTGGGSCCCSSCSHHHHHHHHHHSSCTTCEEEEEEECCTTCHHH
T ss_pred             ccccccccccccccccccccccccCCCCCCCEeEEEECCCCCHHH
Confidence                                     56799999999999999975

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.1e-20  Score=157.57  Aligned_cols=88  Identities=23%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCccccccccc---cccccccchhhhhcCCCeeeeecCCCCCCCcee
Q psy8288          88 RKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHY---KFLNYGYVGLFNLLEMPVTNVTVGLGSNKLPVG  164 (177)
Q Consensus        88 ~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~---~~~~~~~t~~~Nl~G~PaisvP~g~~~~GLPvG  164 (177)
                      ..+.++.+.+.++...+.++|+++|+||+||++.+||++++...   ......||.++|++|+|++|||+|+ .+|||+|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~-s~GlPvG  436 (475)
T d2gi3a1         358 AYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVG  436 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEE-ETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccccchHHHhhhhHHHHHHHHHCCCeEEEeCCC-CCCCCEe
Confidence            34456667788888899999999999999999999999876321   1123458999999999999999998 5899999


Q ss_pred             eEEEcCCCCCCC
Q psy8288         165 FQVSLALVTSKA  176 (177)
Q Consensus       165 vQlvg~~~~D~~  176 (177)
                      |||+|++++|+.
T Consensus       437 vQlig~~~~D~~  448 (475)
T d2gi3a1         437 VQVIGRRFADGK  448 (475)
T ss_dssp             EEEECCTTCHHH
T ss_pred             EEEECCCCCHHH
Confidence            999999999975

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.75  E-value=1.3e-19  Score=156.39  Aligned_cols=92  Identities=18%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcCcccccccccc----ccccccchhhhhcCCCeeeeecCCCCC
Q psy8288          84 CFSQRKIDTLLAKKKDLMKKFRDMLGDNGVFLFPTFINSAHYHYQIHYK----FLNYGYVGLFNLLEMPVTNVTVGLGSN  159 (177)
Q Consensus        84 ~~~~~~y~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~Ap~~~~~~~~----~~~~~~t~~~Nl~G~PaisvP~g~~~~  159 (177)
                      ......|.++.+.+..+++.++++|+++|+||+||++.+||++++....    .....||.++|++|+|++|||+|+ ++
T Consensus       369 ~~~~a~~~~~~~~~~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~-~d  447 (485)
T d2f2aa1         369 GYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SN  447 (485)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ET
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCC-CC
Confidence            4455667888888899999999999999999999999999998764321    123458999999999999999997 68


Q ss_pred             CCceeeEEEcCCCCCCC
Q psy8288         160 KLPVGFQVSLALVTSKA  176 (177)
Q Consensus       160 GLPvGvQlvg~~~~D~~  176 (177)
                      |+|+||||+|++|+|+.
T Consensus       448 GlPvGlQiig~~~~D~~  464 (485)
T d2f2aa1         448 GRPIGLQFIGKPFDEKT  464 (485)
T ss_dssp             TEEEEEEEECSTTCHHH
T ss_pred             CCCEeEEEECCCCCHHH
Confidence            99999999999999975

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=99.68  E-value=2e-17  Score=141.77  Aligned_cols=89  Identities=11%  Similarity=0.014  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHHHH--HHHH--HhcCCCEEEcCCCCcCccccccccccccccccchhhhhcCCCeeeeecCCCCCC
Q psy8288          85 FSQRKIDTLLAKKKDLMK--KFRD--MLGDNGVFLFPTFINSAHYHYQIHYKFLNYGYVGLFNLLEMPVTNVTVGLGSNK  160 (177)
Q Consensus        85 ~~~~~y~~a~~~~~~~~~--~~~~--~~~~~Dvll~Pt~~~~Ap~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~G  160 (177)
                      .....+..++..++++..  .++.  .++++|+||+||++.++|......  .....+|.++|++|+|++|||+|+ .+|
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~--~~~~~~t~~~Nl~G~PaisvP~G~-~~G  452 (490)
T d1m22a_         376 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGD--DFPGESYSAAAVAGYPSLTVPMGQ-IDG  452 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC-----CCTTCCHHHHHHHTCCEEEEEEEE-ETT
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCcccc--cchHHHHHHHHHhCCCEEEEECCC-CCC
Confidence            334445555444433322  2332  467899999999999887654421  123467889999999999999997 689


Q ss_pred             CceeeEEEcCCCCCCC
Q psy8288         161 LPVGFQVSLALVTSKA  176 (177)
Q Consensus       161 LPvGvQlvg~~~~D~~  176 (177)
                      ||+||||+|++++|+.
T Consensus       453 LPvGlQlig~~~~D~~  468 (490)
T d1m22a_         453 LPVGLLFMGTAWSEPK  468 (490)
T ss_dssp             EEEEEEEECSTTCHHH
T ss_pred             CceeEEEECCCCCHHH
Confidence            9999999999999975