Psyllid ID: psy8289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDWESNPRPSTYR
Secondary Structure (PSIPRED)
ccccHHHHHHcccccEEEEHHcccccccHHHHHcccHHHHHHHHcccccccEEEEcccccccccccccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccHHHHHHHHHHHHHccHcHHHEccHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKsvdgilqpkfnqvterlesrkvcpggdnfekhwfrikvhpdwesnprpstyr
Flexible Loop (DISEMBL)
MFYAQFVlakkgplaRIWLAAHWDKKLTKAHVFETNieksvdgilqpkfnqvterlesrkvcpggdnfekhwfrikvhpdwesnprpstyr
Low Complexity Region (SEG)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDWESNPRPSTYR
Disordered region (IsUnstruct)
*FYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHP************
Disordered Region (DISOPRED)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDW**********
Disordered Region (DISEMBL)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDWE*********
Disordered Region (DISPRO)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDWE*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDWESNPRPSTYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
O60216	631	Double-strand-break repai	yes	N/A	0.527	0.076	0.770	6e-17
Q3SWX9	630	Double-strand-break repai	yes	N/A	0.527	0.076	0.770	6e-17
Q61550	635	Double-strand-break repai	yes	N/A	0.527	0.075	0.770	6e-17
O93310	629	Double-strand-break repai	N/A	N/A	0.527	0.076	0.770	2e-16
Q9H4I0	556	Double-strand-break repai	no	N/A	0.527	0.086	0.645	2e-14
A2AU37	552	Double-strand-break repai	no	N/A	0.527	0.086	0.625	6e-14
D2HSB3	554	Double-strand-break repai	no	N/A	0.527	0.086	0.625	2e-13
P30776	628	Cohesin subunit rad21 OS=	yes	N/A	0.648	0.093	0.474	3e-11
Q9FQ20	810	Sister chromatid cohesion	no	N/A	0.615	0.069	0.464	1e-07
Q9FQ19	693	Sister chromatid cohesion	no	N/A	0.527	0.069	0.437	1e-05

>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1  MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Also plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway.
Homo sapiens (taxid: 9606)

>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1  MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Bos taurus (taxid: 9913)

>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1  MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Mus musculus (taxid: 10090)

>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct: 1  MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPK 48

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/espl1 and dissociates from chromatin, allowing sister chromatids to segregate.

Xenopus laevis (taxid: 8355)

>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 41/48 (85%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFY   +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PK
Sbjct: 1  MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPK 48

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Homo sapiens (taxid: 9606)

>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFY   +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E ++  I+ PK
Sbjct: 1  MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPK 48

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Mus musculus (taxid: 10090)

>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFY   +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL  K
Sbjct: 1  MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSK 48

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Ailuropoda melanoleuca (taxid: 9646)

>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERLESR 59
          MFY++ +L+KKGPLA++WLAAHW+KKL+K     T+IE+SV  I+  +   +  RL  +
Sbjct: 1  MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQ 59

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by cut1 and dissociates from chromatin, allowing sister chromatids to segregate. Also involved in the DNA double-strand-break (DSB) repair system.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQVTERL 56
          MFY+  ++++KGPL  IW+AA++ KKL K+ V  T+I  SVD ILQ + + +T R+
Sbjct: 1  MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRV 56

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFY+  +LA+KGPL  +W AAH  ++L K+     NI  +VD I+ P+
Sbjct: 1  MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPE 48

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
357622550	1431	hypothetical protein KGM_21364 [Danaus p	0.527	0.033	0.937	4e-20
332020968	736	Double-strand-break repair protein rad21	0.527	0.065	0.979	5e-20
322795405	778	hypothetical protein SINV_03308 [Solenop	0.527	0.061	0.979	5e-20
189234473	798	PREDICTED: similar to Rad21 CG17436-PA [	0.527	0.060	0.979	6e-20
307207507	781	Double-strand-break repair protein rad21	0.527	0.061	0.979	7e-20
345481278	779	PREDICTED: double-strand-break repair pr	0.527	0.061	0.979	1e-19
307177108	781	Double-strand-break repair protein rad21	0.527	0.061	0.958	1e-19
350404947	772	PREDICTED: double-strand-break repair pr	0.527	0.062	0.979	1e-19
328781551	773	PREDICTED: double-strand-break repair pr	0.527	0.062	0.979	1e-19
340713323	772	PREDICTED: double-strand-break repair pr	0.527	0.062	0.979	2e-19

>gi|357622550|gb|EHJ73978.1| hypothetical protein KGM_21364 [Danaus plexippus]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/48 (93%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLA+IWLAAHWDKKLTKAHVFETNIEKSVDGIL+PK
Sbjct: 1  MFYAHFVLAKKGPLAKIWLAAHWDKKLTKAHVFETNIEKSVDGILKPK 48

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020968|gb|EGI61361.1| Double-strand-break repair protein rad21-like protein [Acromyrmex echinatior]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795405|gb|EFZ18170.1| hypothetical protein SINV_03308 [Solenopsis invicta]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234473|ref|XP_001808764.1| PREDICTED: similar to Rad21 CG17436-PA [Tribolium castaneum] gi|270002814|gb|EEZ99261.1| rad21 [Tribolium castaneum]

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207507|gb|EFN85210.1| Double-strand-break repair protein rad21-like protein [Harpegnathos saltator]

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481278|ref|XP_001602260.2| PREDICTED: double-strand-break repair protein rad21 homolog [Nasonia vitripennis]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177108|gb|EFN66363.1| Double-strand-break repair protein rad21-like protein [Camponotus floridanus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/48 (95%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKK+TKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVDGILQPK 48

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404947|ref|XP_003487269.1| PREDICTED: double-strand-break repair protein rad21 homolog [Bombus impatiens]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781551|ref|XP_003249994.1| PREDICTED: double-strand-break repair protein rad21 homolog [Apis mellifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713323|ref|XP_003395194.1| PREDICTED: double-strand-break repair protein rad21 homolog [Bombus terrestris]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 47/48 (97%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
          MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK
Sbjct: 1  MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
FB|FBgn0260987	715	vtd "verthandi" [Drosophila me	0.527	0.067	0.875	2.9e-18
UNIPROTKB|E5RFV8	225	RAD21 "Double-strand-break rep	0.527	0.213	0.770	4.1e-17
UNIPROTKB|E5RIN7	228	RAD21 "Double-strand-break rep	0.527	0.210	0.770	4.1e-17
UNIPROTKB|E5RJK5	124	RAD21 "Double-strand-break rep	0.527	0.387	0.770	4.1e-17
UNIPROTKB|E5RJW1	120	RAD21 "Double-strand-break rep	0.527	0.4	0.770	4.1e-17
UNIPROTKB|Q3SWX9	630	RAD21 "Double-strand-break rep	0.527	0.076	0.770	4.3e-16
UNIPROTKB|E2QRU9	631	RAD21 "Uncharacterized protein	0.527	0.076	0.770	4.3e-16
UNIPROTKB|O60216	631	RAD21 "Double-strand-break rep	0.527	0.076	0.770	4.3e-16
UNIPROTKB|F1S1K0	631	LOC100738633 "Uncharacterized	0.527	0.076	0.770	4.3e-16
UNIPROTKB|F1NYD0	633	RAD21 "Uncharacterized protein	0.527	0.075	0.770	4.3e-16

FB|FBgn0260987 vtd "verthandi" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFY   +LAKKGPLARIWLAAHWDKK+TKAHVFETNIEKSV+GILQPK
Sbjct:     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPK 48

GO:0006289 "nucleotide-excision repair" evidence=NAS

GO:0008278 "cohesin complex" evidence=ISS;IDA;NAS;IPI

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISS;IMP;NAS

GO:0000775 "chromosome, centromeric region" evidence=NAS

GO:0007067 "mitosis" evidence=IMP

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005705 "polytene chromosome interband" evidence=IDA

GO:0016322 "neuron remodeling" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IGI

UNIPROTKB|E5RFV8 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

UNIPROTKB|E5RIN7 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

UNIPROTKB|E5RJK5 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

UNIPROTKB|E5RJW1 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0071168 "protein localization to chromatin" evidence=ISS

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0071168 "protein localization to chromatin" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0006915 "apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071168 "protein localization to chromatin" evidence=IMP

GO:0006302 "double-strand break repair" evidence=TAS

GO:0006310 "DNA recombination" evidence=TAS

GO:0007131 "reciprocal meiotic recombination" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007091 "metaphase/anaphase transition of mitotic cell cycle" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008278 "cohesin complex" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0000228 "nuclear chromosome" evidence=IEA

UNIPROTKB|F1NYD0 RAD21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPK 48
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PK
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPK 48

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0071168 "protein localization to chromatin" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SWX9	RAD21_BOVIN	No assigned EC number	0.7708	0.5274	0.0761	yes	N/A
O60216	RAD21_HUMAN	No assigned EC number	0.7708	0.5274	0.0760	yes	N/A
Q61550	RAD21_MOUSE	No assigned EC number	0.7708	0.5274	0.0755	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
pfam04825	110	pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec	2e-22

>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein

 Score = 82.7 bits (205), Expect = 2e-22
 Identities = 24/47 (51%), Positives = 33/47 (70%)

Query: 1  MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQP 47
          MFY+  +L KKGPLA +WLAA  +KKL++  + E +I KS + IL P
Sbjct: 1  MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNP 47

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG1213|consensus	614		100.0
PF04825	111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	99.97
PF06278	565	DUF1032: Protein of unknown function (DUF1032); In	80.79

>KOG1213|consensus

Probab=100.00  E-value=8.2e-36  Score=248.21  Aligned_cols=88  Identities=52%  Similarity=0.755  Sum_probs=84.5

Q ss_pred             CccchhhhhccCchhHHHHHhhhccccchhhhhcccHHHHHHhhcCCCCcc----------ceeEeeecccCccccchHH
Q psy8289           1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQ----------VTERLESRKVCPGGDNFEK   70 (91)
Q Consensus         1 MFys~~lLskkgpLa~iWlAA~~~kkL~K~~i~~~dI~~s~~~I~~p~~pl----------gvvRIYsrK~~yL~~D~~~   70 (91)
                      |||||.+|+||||||+|||||||+|||+|+||++|||+++|++|++|.+||          ||||||||||+||++|||+
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999884          6899999999999999999


Q ss_pred             HHHHhhhcCCCCCCCCCC
Q psy8289          71 HWFRIKVHPDWESNPRPS   88 (91)
Q Consensus        71 ~~~rik~~~~~~~~~~~~   88 (91)
                      ++.|||.+|+......|+
T Consensus        81 al~kIk~afr~~~vd~p~   98 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPE   98 (614)
T ss_pred             HHHHHHHHhccccccCCC
Confidence            999999999999877775

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families

Probab=99.97  E-value=2e-32  Score=185.81  Aligned_cols=87  Identities=32%  Similarity=0.443  Sum_probs=80.5

Q ss_pred             CccchhhhhccCchhHHHHHhhhccccchhhhhcccHHHHHHhhcCCCCcc----------ceeEeeecccCccccchHH
Q psy8289           1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKFNQ----------VTERLESRKVCPGGDNFEK   70 (91)
Q Consensus         1 MFys~~lLskkgpLa~iWlAA~~~kkL~K~~i~~~dI~~s~~~I~~p~~pl----------gvvRIYsrK~~yL~~D~~~   70 (91)
                      ||||++||+++|||+.+|+|||+++||+|++|+++||+++|++|++|+.|+          |+||||++|++||++||++
T Consensus         1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~   80 (111)
T PF04825_consen    1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE   80 (111)
T ss_pred             CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998774          7899999999999999999


Q ss_pred             HHHHhhhcCCCCCCCCC
Q psy8289          71 HWFRIKVHPDWESNPRP   87 (91)
Q Consensus        71 ~~~rik~~~~~~~~~~~   87 (91)
                      ++.+|+..+......-|
T Consensus        81 ~~~~l~~~~~~~~~dl~   97 (111)
T PF04825_consen   81 LLSKLKRAFRPKKIDLP   97 (111)
T ss_pred             HHHHHHHHhcccccCCC
Confidence            99999999885433333

Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding

>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2

Probab=80.79  E-value=0.77  Score=39.02  Aligned_cols=40  Identities=15%  Similarity=-0.159  Sum_probs=30.2

Q ss_pred             cHHHHHHhhcCCCCccceeEeeecccCccccchHHHHHHhhhcCCC
Q psy8289          36 NIEKSVDGILQPKFNQVTERLESRKVCPGGDNFEKHWFRIKVHPDW   81 (91)
Q Consensus        36 dI~~s~~~I~~p~~plgvvRIYsrK~~yL~~D~~~~~~rik~~~~~   81 (91)
                      |..+|+--|      -|-+-||||||+||+.-+-.++.-|...-+-
T Consensus         2 nFaEAalli------Qgsa~vYskKVeyly~lv~~~l~~l~~~~~~   41 (565)
T PF06278_consen    2 NFAEAALLI------QGSACVYSKKVEYLYSLVYQALDFLSGKKRA   41 (565)
T ss_pred             CHHHHHHHH------hcchhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            555555555      3667799999999999999999888655543

Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00