Psyllid ID: psy8300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
HFPLKIDNVSSVSLLQHHSSTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
hfplkidnvssvsllqhhsstesprgdlGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLregykmspnegQEELEEVQSDLRKRDDEFEKEaltgdvesgksyQAQTISLLSRVVIQAFTLTFLaewgdrsqLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT
Flexible Loop (DISEMBL)
hfplkidnVSSVSLLQHHSSTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEaltgdvesgksyQAQTISLLSRVVIQAFTLTflaewgdrSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIggrfiaqrisvrt
Low Complexity Region (SEG)
HFPLKIDNvssvsllqhhssTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT
Disordered region (IsUnstruct)
**************************DLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREG*****************************************QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRI****
Disordered Region (DISOPRED)
**P**************************FIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREG********************************************TISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISV**
Disordered Region (DISEMBL)
HFPLKIDNVSSVSLLQHHSSTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPN*************RKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT
Disordered Region (DISPRO)
******D*******************DLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSP*****EL***QSDLR*R******************YQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HFPLKIDNVSSVSLLQHHSSTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGxxxxxxxxxxxxxxxxxxxxxALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.589	0.578	0.649	6.8e-69
UNIPROTKB|Q9HC07	324	TMEM165 "Transmembrane protein	0.589	0.466	0.649	6.8e-69
RGD|1306983	323	Tmem165 "transmembrane protein	0.589	0.467	0.647	1.1e-68
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.589	0.467	0.647	1.4e-68
UNIPROTKB|E1B731	324	TMEM165 "Uncharacterized prote	0.589	0.466	0.643	2.3e-68
UNIPROTKB|F1PU63	325	TMEM165 "Uncharacterized prote	0.589	0.464	0.643	2.3e-68
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.589	0.594	0.630	6e-68
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.589	0.495	0.632	1.1e-66
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.585	0.505	0.569	1.1e-58
FB|FBgn0260659	503	CG42542 [Drosophila melanogast	0.394	0.200	0.582	1.4e-42

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
 Identities = 102/157 (64%), Positives = 126/157 (80%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+STVLF IFG++MLREG KMSP+EGQEELEEVQ++L+K+D+
Sbjct:    80 LSVLFGYATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDE 139

Query:   166 EFEKEALT---GDVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAA 219
             EF++  L    GDVE+G S    Q + +  +S + +QA TLTFLAEWGDRSQLTTI+LAA
Sbjct:   140 EFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAA 199

Query:   220 REDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             RED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   200 REDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 236

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HC07 TMEM165 "Transmembrane protein 165" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
 Identities = 102/157 (64%), Positives = 126/157 (80%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+STVLF IFG++MLREG KMSP+EGQEELEEVQ++L+K+D+
Sbjct:   143 LSVLFGYATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDE 202

Query:   166 EFEKEALT---GDVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAA 219
             EF++  L    GDVE+G S    Q + +  +S + +QA TLTFLAEWGDRSQLTTI+LAA
Sbjct:   203 EFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAA 262

Query:   220 REDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             RED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   263 REDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 299

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

RGD|1306983 Tmem165 "transmembrane protein 165" [Rattus norvegicus (taxid:10116)]

 Score = 509 (184.2 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 101/156 (64%), Positives = 126/156 (80%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+ST LF IFG++MLREG KMSP+EGQEELEEVQ++L+K+D+
Sbjct:   143 LSVLFGYATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDE 202

Query:   166 EFEK-EALTG-DVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAR 220
             EF++ + L G DVE+G S    Q + +  +S + +QA TLTFLAEWGDRSQLTTI+LAAR
Sbjct:   203 EFQRTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAR 262

Query:   221 EDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             ED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   263 EDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 298

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 509 (184.2 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
 Identities = 101/156 (64%), Positives = 126/156 (80%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+ST LF IFG++MLREG KMSP+EGQEELEEVQ++L+K+D+
Sbjct:   143 LSVLFGYATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDE 202

Query:   166 EFEK-EALTG-DVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAR 220
             EF++ + L G DVE+G S    Q + +  +S + +QA TLTFLAEWGDRSQLTTI+LAAR
Sbjct:   203 EFQRTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAR 262

Query:   221 EDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             ED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   263 EDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 298

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B731 TMEM165 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 101/157 (64%), Positives = 125/157 (79%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+ST LF IFG++MLREG KMSP+EGQEELEEVQ++L+K+D+
Sbjct:   143 LSVLFGYATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDE 202

Query:   166 EFEKEALT---GDVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAA 219
             EF++  L    GDVE+G S    Q + +  +S + +QA TLTFLAEWGDRSQLTTI+LAA
Sbjct:   203 EFQRTKLLNGPGDVETGTSTTIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAA 262

Query:   220 REDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             RED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   263 REDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 299

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1PU63 TMEM165 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 511 (184.9 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 101/157 (64%), Positives = 125/157 (79%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+ST LF IFG++MLREG KMSP+EGQEELEEVQ++L+K+D+
Sbjct:   144 LSVLFGYATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDE 203

Query:   166 EFEKEALT---GDVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAA 219
             EF++  L    GDVE+G S    Q + +  +S + +QA TLTFLAEWGDRSQLTTI+LAA
Sbjct:   204 EFQRTKLLNGPGDVETGASTAIPQKRWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAA 263

Query:   220 REDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             RED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   264 REDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 300

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 507 (183.5 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
 Identities = 99/157 (63%), Positives = 125/157 (79%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  +IPR++TYY+ST LF IFG++MLREG KMSP+EGQEELEEVQ++++K+D+
Sbjct:    73 LSVLFGYATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAEIKKKDE 132

Query:   166 EFEKEALT---GDVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAA 219
             E ++  L    GDVE+G +    Q + +  +S + +QAFTLTFLAEWGDRSQLTTI+LAA
Sbjct:   133 ELQRTKLLNGPGDVETGSTATIPQKKWLHFISPIFVQAFTLTFLAEWGDRSQLTTIVLAA 192

Query:   220 REDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             RED YGV +GG +GH LCTGLAVIGGR IAQ+ISVRT
Sbjct:   193 REDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRT 229

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 489 (177.2 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 100/158 (63%), Positives = 123/158 (77%)

Query:   106 LSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDD 165
             LS  F  A  IIPRI+TYYIST LF IFG++MLREG +MSP+EGQEELEEVQ++++K+D+
Sbjct:   123 LSVLFGYATTIIPRIYTYYISTALFAIFGVRMLREGLRMSPDEGQEELEEVQAEIKKKDE 182

Query:   166 EFEKEALTG---DVESGKSY----QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILA 218
             E ++  L     DVE+G +     Q +  SL+S + IQA TLTFLAEWGDRSQL TI+LA
Sbjct:   183 ELQRYKLANGAPDVEAGTAANMLPQRKWPSLISPIFIQALTLTFLAEWGDRSQLATIVLA 242

Query:   219 AREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             ARED +GV +GG LGH LCTGLAVIGGR +AQ+ISVRT
Sbjct:   243 AREDPFGVAVGGTLGHCLCTGLAVIGGRMVAQKISVRT 280

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 434 (157.8 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 90/158 (56%), Positives = 114/158 (72%)

Query:   105 VLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRD 164
             VLS        +IPR  TYY+ST LF +FGLKML EG+ MSPNEGQE  EE Q+++ KR+
Sbjct:   114 VLSACLGWITQVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVAKRE 173

Query:   165 DEFEK---EALTGDVESGKSYQAQTISLL---SRVVIQAFTLTFLAEWGDRSQLTTIILA 218
              E +    E L G    G + Q++T  +    SR+ I+AF+LTF+AEWGDRSQLTTIIL 
Sbjct:   174 GELDAGKFEMLEGG--GGVASQSETRKIFLFTSRIFIEAFSLTFVAEWGDRSQLTTIILG 231

Query:   219 AREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             ARE++ GV  GG+LGH+LCTG+AVIGG+ +AQRISVRT
Sbjct:   232 ARENIAGVIGGGILGHALCTGIAVIGGKIVAQRISVRT 269

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0260659 CG42542 [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 60/103 (58%), Positives = 74/103 (71%)

Query:   156 VQSDLRKRDDEFEKEALTGDVESGKSY-QAQTISLLS-RVVIQAFTLTFLAEWGDRSQLT 213
             V   L+ R D     AL  D ESG+   Q +  +  + R++ QAFT+TFLAEWGDRSQLT
Sbjct:   377 VNGALKARLDRDVNAALVNDAESGRRRPQKRGATYFTMRILAQAFTMTFLAEWGDRSQLT 436

Query:   214 TIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
             TIILAA +DVYGV  GG++GH +CTGLAVIGGR +A +ISVRT
Sbjct:   437 TIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRT 479

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	256
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	3e-38
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	1e-16
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	1e-13

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score =  131 bits (332), Expect = 3e-38
 Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 65/226 (28%)

Query: 33  AFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYV 92
           A + +L ++ ++E+GDKT  IA ++AMR+ R  VF G   AL  M               
Sbjct: 3   ALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMH-------------- 48

Query: 93  QCTFYTYSPQVLVLSGAFDMAA-NIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQE 151
                        L+     AA +++P     + S VLF+ F + ML E           
Sbjct: 49  ------------ALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED---------- 86

Query: 152 ELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQ 211
                     K DDE                +AQ  S    V +  F   FLAE GD++Q
Sbjct: 87  ----------KEDDE----------------EAQAASPRG-VFVTTFITFFLAELGDKTQ 119

Query: 212 LTTIILAARE-DVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT 256
           + TI LAA     + V  G  LG  L + LAV+ G+ IA ++  R 
Sbjct: 120 IATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERL 165

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 72.1 bits (178), Expect = 1e-16
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 195 IQAFTLTFLAEWGDRSQLTTIILAARE--DVYGVTLGGVLGHSLCTGLAVIGGRFIAQRI 252
           + +F L FLAE GD++QL TI LAAR     + V LG  L  +L T LAV+ GR++A  +
Sbjct: 2   LTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATLL 61

Query: 253 SVRT 256
             R 
Sbjct: 62  PPRV 65

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 64.0 bits (157), Expect = 1e-13
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 29/104 (27%)

Query: 34  FVAALSVIVVSELGDKTFFIAAIMAMRHPR--VTVFIGAIAALALMTKFFHHEMLLDKVY 91
           F+ +  +I ++ELGDKT      +A R+ R    VF+GA  ALAL T             
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALAT------------- 47

Query: 92  VQCTFYTYSPQVLVLSGAF-DMAANIIPRIWTYYISTVLFIIFG 134
                        +L+       A ++P    ++++ VLF+ FG
Sbjct: 48  -------------LLAVLLGRWLATLLPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
KOG2881|consensus	294		100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.86
COG2119	190	Predicted membrane protein [Function unknown]	99.81
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.81
KOG2881|consensus	294		99.56
COG4280	236	Predicted membrane protein [Function unknown]	97.29
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	97.02
PRK11469	188	hypothetical protein; Provisional	96.35
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	95.78
COG4300	205	CadD Predicted permease, cadmium resistance protei	94.83
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	94.69
PF03741	183	TerC: Integral membrane protein TerC family; Inter	94.48
COG1971	190	Predicted membrane protein [Function unknown]	93.39
TIGR00145	283	FTR1 family protein. A characterized member from y	93.05
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	92.84
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	89.73
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	89.64
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	89.15
PF01914	203	MarC: MarC family integral membrane protein; Inter	84.9
COG0861	254	TerC Membrane protein TerC, possibly involved in t	80.45

>KOG2881|consensus

Probab=100.00  E-value=9.5e-58  Score=415.74  Aligned_cols=207  Identities=59%  Similarity=0.980  Sum_probs=185.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCch
Q psy8300          24 PRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQV  103 (256)
Q Consensus        24 ~~~~~~~~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  103 (256)
                      +..+.+++++|..++++||++|+||||||+|++|||||+|..||.|+..||++||                         
T Consensus        59 ~~~~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMT-------------------------  113 (294)
T KOG2881|consen   59 SSTASSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMT-------------------------  113 (294)
T ss_pred             ccchHHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHH-------------------------
Confidence            3345678999999999999999999999999999999999999999999999999                         


Q ss_pred             hhhhhhHhhhh-ccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhh--hccccccCc
Q psy8300         104 LVLSGAFDMAA-NIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEA--LTGDVESGK  180 (256)
Q Consensus       104 ~~lsv~~G~~~-~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~--~~~~~e~g~  180 (256)
                       +||+++||++ +.+|++++++++++||++||+|||+|+++|+|++++||.||+|+|++++|++.+.-+  .+++.+++.
T Consensus       114 -iLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~  192 (294)
T KOG2881|consen  114 -ILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGS  192 (294)
T ss_pred             -HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccch
Confidence             9999999987 999999999999999999999999999999999999999999999999988876322  233333332


Q ss_pred             c--chh-hHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhhccCCCC
Q psy8300         181 S--YQA-QTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT  256 (256)
Q Consensus       181 ~--~~~-~~~~~~~~~f~taF~liFLAE~GDKTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r~  256 (256)
                      .  +.| .....+.|+|+++|.++|++||||||||+||+|||+.||++|++|+++||.+||++||++|+++++||++|+
T Consensus       193 ~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rt  271 (294)
T KOG2881|consen  193 QKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRT  271 (294)
T ss_pred             hhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEE
Confidence            1  122 233456899999999999999999999999999999999999999999999999999999999999999984

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.6e-45  Score=319.94  Aligned_cols=163  Identities=36%  Similarity=0.493  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhH
Q psy8300          31 IHAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAF  110 (256)
Q Consensus        31 ~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~  110 (256)
                      +++|..+.++|++||+|||||+++++||+||+|++||.|+..|++.||                          .+++++
T Consensus         1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~--------------------------~la~~v   54 (190)
T COG2119           1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMH--------------------------ALAVLV   54 (190)
T ss_pred             ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH--------------------------HHHHHH
Confidence            367899999999999999999999999999999999999999999999                          999999


Q ss_pred             h-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHH
Q psy8300         111 D-MAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISL  189 (256)
Q Consensus       111 G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~  189 (256)
                      | ++...+|+++.+++.+++|++||+|+++|+.+      ++|+.                        ...++      
T Consensus        55 G~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~------~~~e~------------------------~~~~~------   98 (190)
T COG2119          55 GHAAASLLPERPLAWASGVLFLAFAVWMLIEDKE------DDEEA------------------------QAASP------   98 (190)
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHHHHhccccc------ccccc------------------------ccccc------
Confidence            9 67899999999999999999999999997421      11100                        00011      


Q ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHhhccC-ceEEeehHHHHHHHHHHHHHHHhHHhhhccCCCC
Q psy8300         190 LSRVVIQAFTLTFLAEWGDRSQLTTIILAARED-VYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT  256 (256)
Q Consensus       190 ~~~~f~taF~liFLAE~GDKTQLATiaLAa~~~-p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r~  256 (256)
                       +.+|.++|+++|++|||||||++|++||++++ |+.|++|+++||++|++++|++|+++++|+|+|+
T Consensus        99 -~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~  165 (190)
T COG2119          99 -RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERL  165 (190)
T ss_pred             -ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence             36899999999999999999999999999975 7999999999999999999999999999999974

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.86  E-value=4.6e-22  Score=151.99  Aligned_cols=75  Identities=36%  Similarity=0.543  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHccC--CCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh
Q psy8300          34 FVAALSVIVVSELGDKTFFIAAIMAMRH--PRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD  111 (256)
Q Consensus        34 f~~af~~iflaElGDKTq~~a~~LA~r~--~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G  111 (256)
                      |+++|.++|++|+|||||++++.||+||  +++.|++|+.+|++++|                          ++++++|
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~--------------------------~lav~~G   54 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALAT--------------------------GLAVLLG   54 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------------------HHHHHHH
Confidence            6789999999999999999999999999  56789999999999999                          9999999


Q ss_pred             -hhhccCCHHHHHHHHHHHHHHHH
Q psy8300         112 -MAANIIPRIWTYYISTVLFIIFG  134 (256)
Q Consensus       112 -~~~~~lp~~~~~~~a~~lFi~fG  134 (256)
                       ++.+++|+++++++++++|+.||
T Consensus        55 ~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen   55 SWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHC
Confidence             78999999999999999999987

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.81  E-value=5.4e-20  Score=161.30  Aligned_cols=103  Identities=24%  Similarity=0.358  Sum_probs=90.6

Q ss_pred             ccccCCCCCCCCCCCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHccCCC-cchHHHHHHHHHHhchhccchhhhhhhh
Q psy8300          13 SLLQHHSSTESPRGDLGFIHAFVAALSVIVVSELGDKTFFIAAIMAMRHPR-VTVFIGAIAALALMTKFFHHEMLLDKVY   91 (256)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~f~~af~~iflaElGDKTq~~a~~LA~r~~~-~~Vf~G~~~al~~~t~~~~~~~~~~~~~   91 (256)
                      ..+.|+|..+++....+....|+++|+++|++|||||||++|+.||++|+. +.||+|+.+|+.+++             
T Consensus        81 ~~l~edk~~~~e~~~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s-------------  147 (190)
T COG2119          81 WMLIEDKEDDEEAQAASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILAS-------------  147 (190)
T ss_pred             HHhcccccccccccccccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHH-------------
Confidence            345666665544333344569999999999999999999999999999987 789999999999999             


Q ss_pred             hhccccccCCchhhhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300          92 VQCTFYTYSPQVLVLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREG  141 (256)
Q Consensus        92 ~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~  141 (256)
                                   +++|++| ++++++|.+.++.+++++|++||+..+|+.
T Consensus       148 -------------~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~  185 (190)
T COG2119         148 -------------VLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV  185 (190)
T ss_pred             -------------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         9999999 899999999999999999999999999975

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.81  E-value=7.1e-21  Score=145.47  Aligned_cols=63  Identities=48%  Similarity=0.686  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHhhcc--CceEEeehHHHHHHHHHHHHHHHhHHhhhccCCCC
Q psy8300         194 VIQAFTLTFLAEWGDRSQLTTIILAARE--DVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVRT  256 (256)
Q Consensus       194 f~taF~liFLAE~GDKTQLATiaLAa~~--~p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r~  256 (256)
                      |+++|.++|++|||||||++|++||+||  +|+.|++|+++|++++++++|++|+++.+++|+|+
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~   65 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERY   65 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            5789999999999999999999999999  89999999999999999999999999999999873

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>KOG2881|consensus

Probab=99.56  E-value=1.3e-15  Score=140.16  Aligned_cols=84  Identities=32%  Similarity=0.390  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHccCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh
Q psy8300          32 HAFVAALSVIVVSELGDKTFFIAAIMAMRHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD  111 (256)
Q Consensus        32 ~~f~~af~~iflaElGDKTq~~a~~LA~r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G  111 (256)
                      ..|+.+|.++|++|||||+|++++.||++-+++.|++|+++|+++||                          .++|+.|
T Consensus       207 pifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT--------------------------~lAVigG  260 (294)
T KOG2881|consen  207 PIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCT--------------------------GLAVIGG  260 (294)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHH--------------------------HHHHhhh
Confidence            48999999999999999999999999999999999999999999999                          9999999


Q ss_pred             -hhhccCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300         112 -MAANIIPRIWTYYISTVLFIIFGLKMLREG  141 (256)
Q Consensus       112 -~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~  141 (256)
                       +++++|+.+.+.++.+++|++||+..++.+
T Consensus       261 k~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~  291 (294)
T KOG2881|consen  261 KYLASKISVRTVTLIGGILFIIFGLVYIFQG  291 (294)
T ss_pred             HHHhhhheeEEEEEecchhHHHHHHHHHhcC
Confidence             899999999999999999999999999864

>COG4280 Predicted membrane protein [Function unknown]

Probab=97.29  E-value=0.001  Score=60.48  Aligned_cols=145  Identities=23%  Similarity=0.315  Sum_probs=88.8

Q ss_pred             CCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300          61 HPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLRE  140 (256)
Q Consensus        61 ~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~  140 (256)
                      ++...-++|+.+++++.-                          .++.++|..-..+|-.+.++++|++.++||-.-+|.
T Consensus        31 ~~wr~al~ga~lglalvl--------------------------~l~lvlGk~L~lvPln~lqiv~gvLLllFG~rw~Rs   84 (236)
T COG4280          31 YKWRLALIGAVLGLALVL--------------------------ILTLVLGKLLYLVPLNYLQIVSGVLLLLFGYRWIRS   84 (236)
T ss_pred             ccccHHHHHHHHHHHHHH--------------------------HHHHHHccceeeeechHHHHHHHHHHHHHHHHHHHH
Confidence            344668999999999987                          899999988899999999999999999999998887


Q ss_pred             hccCCCC--CChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHh
Q psy8300         141 GYKMSPN--EGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILA  218 (256)
Q Consensus       141 ~~~~~~d--~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~liFLAE~GDKTQLATiaLA  218 (256)
                      +.+....  .+-+|++ .|+.+..|++           |+|.++         -.+.++|-...+ | |=.--+..+++.
T Consensus        85 avrr~ag~rkg~~ee~-leE~~~ldq~-----------e~g~~~---------la~l~~fk~v~L-e-glEv~~iVialg  141 (236)
T COG4280          85 AVRRFAGIRKGGGEEK-LEEGIVLDQE-----------EEGFSK---------LALLVVFKVVAL-E-GLEVSLIVIALG  141 (236)
T ss_pred             HHHHHhchhccCchhh-Hhhhhhcccc-----------cccchh---------hhHHHHhHHHHH-h-hheeeeeeeeec
Confidence            6533221  1111211 2333333322           222211         223333322111 1 222234556666


Q ss_pred             hcc-CceEEeehHHHHHHHHHHHHHHHhHHhhhccCCC
Q psy8300         219 ARE-DVYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVR  255 (256)
Q Consensus       219 a~~-~p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r  255 (256)
                      +.+ ++.....|+..+..+.-.++.++-+.++ |+|++
T Consensus       142 aa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~  178 (236)
T COG4280         142 AASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEP  178 (236)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCch
Confidence            654 4666667777777777777776666654 36653

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=97.02  E-value=0.016  Score=51.46  Aligned_cols=40  Identities=15%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8300         105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGYKM  144 (256)
Q Consensus       105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~  144 (256)
                      .++..+| ++.+++|+++-+++++++++++|+||++|+++.
T Consensus        45 ~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~   85 (206)
T TIGR02840        45 FISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRP   85 (206)
T ss_pred             HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8899999 788999999999999999999999999999853

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK11469 hypothetical protein; Provisional

Probab=96.35  E-value=0.039  Score=48.54  Aligned_cols=38  Identities=26%  Similarity=0.662  Sum_probs=32.6

Q ss_pred             hhhhhHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8300         105 VLSGAFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGYK  143 (256)
Q Consensus       105 ~lsv~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~  143 (256)
                      .++-.+| ++.+++|+ +-+|++..++++.|+||++|+++
T Consensus        52 ~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~   90 (188)
T PRK11469         52 LIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFR   90 (188)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            7788888 56777666 77999999999999999999985

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=95.78  E-value=0.031  Score=49.69  Aligned_cols=52  Identities=21%  Similarity=0.321  Sum_probs=45.1

Q ss_pred             CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8300          63 RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLRE  140 (256)
Q Consensus        63 ~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~~  140 (256)
                      ++.+.+|=.+|..+.-                          ..|...++....+|++|+--.-|.+=+++|++.++.
T Consensus        25 ~~~I~~GqylG~~~Lv--------------------------~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~   76 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILV--------------------------LASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFS   76 (191)
T ss_pred             hhhhhhhHHHHHHHHH--------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            5779999999988776                          677777788889999999888899999999999885

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=94.83  E-value=0.17  Score=45.67  Aligned_cols=74  Identities=19%  Similarity=0.359  Sum_probs=52.5

Q ss_pred             HHHhcCcHHHHHHHHHHccC---CCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCC
Q psy8300          42 VVSELGDKTFFIAAIMAMRH---PRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIP  118 (256)
Q Consensus        42 flaElGDKTq~~a~~LA~r~---~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp  118 (256)
                      +.|--=|--=+....+|.+-   +++...+|=.++....-                          ..|..+-++.+.+|
T Consensus        12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~li--------------------------laSL~~a~v~~fvp   65 (205)
T COG4300          12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILI--------------------------LASLLFAFVLNFVP   65 (205)
T ss_pred             HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHH--------------------------HHHHHHHHHHhhCc
Confidence            33333344444455555543   34779999888877654                          44444448899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q psy8300         119 RIWTYYISTVLFIIFGLKMLREG  141 (256)
Q Consensus       119 ~~~~~~~a~~lFi~fG~~~L~~~  141 (256)
                      ++|+--.-|..=++.|+|.++.+
T Consensus        66 ~e~I~glLGLIPi~LGik~l~~~   88 (205)
T COG4300          66 EEWILGLLGLIPIYLGIKVLILG   88 (205)
T ss_pred             HHHHHHHHhHHHHHHhhHHhhcc
Confidence            99999899999999999999964

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=94.69  E-value=0.37  Score=45.81  Aligned_cols=65  Identities=28%  Similarity=0.422  Sum_probs=46.2

Q ss_pred             CcHHHHHHHHHHcc-CC----CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh-hhhccCCHH
Q psy8300          47 GDKTFFIAAIMAMR-HP----RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD-MAANIIPRI  120 (256)
Q Consensus        47 GDKTq~~a~~LA~r-~~----~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~  120 (256)
                      +|+-+..+++++.+ -|    +...+.|...|+.+=.                           +-..+| ++-+.+  .
T Consensus        77 vDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~---------------------------i~i~~g~~Li~~f--~  127 (302)
T TIGR03718        77 VDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRA---------------------------IFIALGAALIEQF--H  127 (302)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHh--H
Confidence            78889888888763 34    3679999999987753                           445555 554432  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy8300         121 WTYYISTVLFIIFGLKMLRE  140 (256)
Q Consensus       121 ~~~~~a~~lFi~fG~~~L~~  140 (256)
                      |+.++.|+..++-|.+++++
T Consensus       128 wi~~ifG~fLi~~a~k~~~~  147 (302)
T TIGR03718       128 WVLYIFGAFLLYTGIKMLFE  147 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            67777777777777777775

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=94.48  E-value=0.94  Score=39.72  Aligned_cols=143  Identities=21%  Similarity=0.302  Sum_probs=84.4

Q ss_pred             CcHHHHHHHHHHc---cCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHH
Q psy8300          47 GDKTFFIAAIMAM---RHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTY  123 (256)
Q Consensus        47 GDKTq~~a~~LA~---r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~  123 (256)
                      +|+-.+++++...   +++++..+.|...|+.+-.                          ++-....++.++.  .|+.
T Consensus        12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~--------------------------~~i~~~~~ll~~~--~~i~   63 (183)
T PF03741_consen   12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRI--------------------------IFIFLASWLLSIF--PWIL   63 (183)
T ss_pred             hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHH--------------------------HHHHHHHHHHHHH--HHHH
Confidence            6777777665543   1234679999999997754                          3333333665543  7889


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHH
Q psy8300         124 YISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFL  203 (256)
Q Consensus       124 ~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~liFL  203 (256)
                      ++.|+..++.|.+++++..  ++|+   |.++.+ +    +++        . .    +.+      .+.++.+.   ..
T Consensus        64 ~igG~~Ll~~a~k~~~~~~--~~d~---~~~~~~-~----~~~--------~-~----~~~------~~~~~~~v---~~  111 (183)
T PF03741_consen   64 LIGGLFLLYIAIKLLHEER--DEDP---ENAEVE-E----EKK--------F-F----PVS------KSSLWLAV---IQ  111 (183)
T ss_pred             HHHHHHHHHHHHHHHHhcc--cccc---chhhhh-h----hhc--------c-c----cch------hHHHHHHH---HH
Confidence            9999999999999988743  1111   100000 0    000        0 0    000      11223332   22


Q ss_pred             Hhhcc-----hHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhhc
Q psy8300         204 AEWGD-----RSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQR  251 (256)
Q Consensus       204 AE~GD-----KTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~~  251 (256)
                      -|+=|     -|=+|+++++  .+++.++.|.+++....-..+-++.+.+.++
T Consensus       112 I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~  162 (183)
T PF03741_consen  112 IELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF  162 (183)
T ss_pred             HHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444     3456666666  7889999999999988888888887776553

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=93.39  E-value=0.048  Score=48.82  Aligned_cols=40  Identities=33%  Similarity=0.611  Sum_probs=31.1

Q ss_pred             hhhhhHhh-hhccCC---HHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8300         105 VLSGAFDM-AANIIP---RIWTYYISTVLFIIFGLKMLREGYKM  144 (256)
Q Consensus       105 ~lsv~~G~-~~~~lp---~~~~~~~a~~lFi~fG~~~L~~~~~~  144 (256)
                      .++-++|| +...+|   ..|-+|++++++++.|+||++|+++.
T Consensus        48 ~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~   91 (190)
T COG1971          48 AIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN   91 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            45556664 344445   77789999999999999999999854

>TIGR00145 FTR1 family protein

Probab=93.05  E-value=1.4  Score=41.27  Aligned_cols=53  Identities=25%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCC----HH----HHHHHHHHHHHHHH
Q psy8300          63 RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIP----RI----WTYYISTVLFIIFG  134 (256)
Q Consensus        63 ~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp----~~----~~~~~a~~lFi~fG  134 (256)
                      +++|+.|+.+|+++.-                          ++++++..+.+-++    ++    .+..++.++..+++
T Consensus        38 ~~~V~~G~~~gl~~s~--------------------------~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~   91 (283)
T TIGR00145        38 RGWVWVGVLAGFAACL--------------------------AIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMG   91 (283)
T ss_pred             hhHHHHHHHHHHHHHH--------------------------HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999997764                          55555543333332    33    35788888999999


Q ss_pred             HHHHHhh
Q psy8300         135 LKMLREG  141 (256)
Q Consensus       135 ~~~L~~~  141 (256)
                      +||.+.+
T Consensus        92 ~Wm~~~~   98 (283)
T TIGR00145        92 LWMLRMQ   98 (283)
T ss_pred             HHHHHHH
Confidence            9999653

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=92.84  E-value=1.2  Score=41.53  Aligned_cols=149  Identities=26%  Similarity=0.256  Sum_probs=82.6

Q ss_pred             CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCH-----------HHHHHHHHHHHH
Q psy8300          63 RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPR-----------IWTYYISTVLFI  131 (256)
Q Consensus        63 ~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~-----------~~~~~~a~~lFi  131 (256)
                      +++|+.|+.+|++...                          .++..+-.+...++.           ..+..++.++-.
T Consensus        35 ~~~V~~G~~~g~~~s~--------------------------~~~~~~~~~~~~~~~~~~~~~~e~~eg~~~liA~~li~   88 (306)
T PF03239_consen   35 RRWVWLGVAAGLVASL--------------------------VIGAVFAVIFYTLSGDYWGISEELFEGAISLIAVALIT   88 (306)
T ss_pred             hheeeecHhHHHHHHH--------------------------HHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHH
Confidence            4889999999998766                          555555544444442           234777888888


Q ss_pred             HHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHhhcchHH
Q psy8300         132 IFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQ  211 (256)
Q Consensus       132 ~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~liFLAE~GDKTQ  211 (256)
                      .+++||.+.+-+++.+ -+++.++.   ++.. +++++.. ..+ +.    .    +..+..|..+|+. .+=| |=-|=
T Consensus        89 ~m~~wm~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~-~~~-~~----~----~~~~~l~~~afl~-vlRE-G~E~v  151 (306)
T PF03239_consen   89 WMVFWMRRHGRKMKGE-WEDKLAKA---LSSG-SEDARAS-QKD-EG----G----GSKWALFLLAFLI-VLRE-GLEAV  151 (306)
T ss_pred             HHHHHHHHHHHhhchh-HHHHHHHH---Hhhc-cchhhhh-hhc-cc----c----chhhHHHHHHHHH-HHHh-hHHHH
Confidence            9999999864333221 11111111   1111 1111110 000 00    0    1125667777732 3333 44555


Q ss_pred             HHHHHHhhccC--ceEEeehHHHHHHHHHHHHHHHhHHhhhccCCC
Q psy8300         212 LTTIILAARED--VYGVTLGGVLGHSLCTGLAVIGGRFIAQRISVR  255 (256)
Q Consensus       212 LATiaLAa~~~--p~~V~iGa~lGl~l~t~laVl~G~~l~~~Ip~r  255 (256)
                      +--.++.+..+  ...+..|+.+|.+++.+++.++-+. ..++|.+
T Consensus       152 Lfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~-~~~i~~~  196 (306)
T PF03239_consen  152 LFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRG-LIRISLR  196 (306)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcChH
Confidence            55556655543  5677888888988888888887654 4456643

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=89.73  E-value=11  Score=31.63  Aligned_cols=64  Identities=17%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             HHHHHHHccCCC---cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh--hhhccCC--HHHHHH
Q psy8300          52 FIAAIMAMRHPR---VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD--MAANIIP--RIWTYY  124 (256)
Q Consensus        52 ~~a~~LA~r~~~---~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G--~~~~~lp--~~~~~~  124 (256)
                      +..+-.++++++   ..+.+|...+-++..                           +.+.+|  .+.+..|  ..++++
T Consensus        12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~---------------------------~~~~~g~~~l~~~~~~~~~~l~~   64 (191)
T PF01810_consen   12 LLVISNGLRKGFKAGLPVALGAALGDLIYI---------------------------LLAVFGLSALLKSSPWLFMILKL   64 (191)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHhChHHHHHHHH
Confidence            344555666664   446677777766654                           333444  4434333  456799


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy8300         125 ISTVLFIIFGLKMLREGY  142 (256)
Q Consensus       125 ~a~~lFi~fG~~~L~~~~  142 (256)
                      ++++.++++|.+++++..
T Consensus        65 ~G~~~L~~lg~~~~~~~~   82 (191)
T PF01810_consen   65 LGALYLLYLGYKLLRSKF   82 (191)
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999999753

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=89.64  E-value=0.6  Score=41.90  Aligned_cols=55  Identities=20%  Similarity=0.419  Sum_probs=43.7

Q ss_pred             cCCCcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q psy8300          60 RHPRVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFDMAANIIPRIWTYYISTVLFIIFGLKMLR  139 (256)
Q Consensus        60 r~~~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G~~~~~lp~~~~~~~a~~lFi~fG~~~L~  139 (256)
                      |++++.+.+|=.++....-                          ..|...+.....+|++|+--.-|.+=+++|+|-++
T Consensus        21 ~~~~~~IviGqylGf~~Lv--------------------------~~Sl~~a~gl~~iP~~wIlGlLGliPI~lGi~~l~   74 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILI--------------------------LVSLLLAFGVNLIPEKWVLGLLGLIPIYLGIKVAI   74 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHH--------------------------HHHHHHHHHHHhCCHHHHHhHHhHHHHHHHHHHHh
Confidence            4566789999999987754                          45655456567999999977888888999999998


Q ss_pred             h
Q psy8300         140 E  140 (256)
Q Consensus       140 ~  140 (256)
                      +
T Consensus        75 ~   75 (193)
T TIGR00779        75 K   75 (193)
T ss_pred             c
Confidence            5

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=89.15  E-value=5.2  Score=36.30  Aligned_cols=133  Identities=20%  Similarity=0.330  Sum_probs=75.2

Q ss_pred             CcHHHHHHHHHHccCC----CcchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhhhHh-hhhccCCHHH
Q psy8300          47 GDKTFFIAAIMAMRHP----RVTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSGAFD-MAANIIPRIW  121 (256)
Q Consensus        47 GDKTq~~a~~LA~r~~----~~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv~~G-~~~~~lp~~~  121 (256)
                      +|+-.+++++.. +-|    +...+.|..+|+.+=-                           +-..+| ++.+   ..|
T Consensus         9 ~DN~~via~~~~-~LP~~~r~~al~~Gi~gAivlR~---------------------------i~i~~~~~Ll~---~~~   57 (215)
T TIGR03716         9 ADNALVLAVMVK-HLPEKQRKKALFYGLIGAYVFRF---------------------------IALFLASFLIK---FWW   57 (215)
T ss_pred             hhHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHH---HHH
Confidence            577777766644 333    3679999999987743                           223333 5544   247


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHHHHHHHHHHHHHHHH
Q psy8300         122 TYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTISLLSRVVIQAFTLT  201 (256)
Q Consensus       122 ~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~f~taF~li  201 (256)
                      +.++.|+..++-|.+++++.     +++ +|.+         +++          ..   +..       +-|+.+   +
T Consensus        58 l~~iGG~~Ll~~~~k~l~~~-----~~~-~~~~---------~~~----------~~---~~~-------~~f~~a---v   99 (215)
T TIGR03716        58 IKAIGALYLLYLAIKHFRKK-----KKG-KEDE---------EAE----------KK---KAH-------SGFWRT---V   99 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----ccc-cccc---------ccc----------cc---ccc-------chHHHH---H
Confidence            78888888888888888752     111 1100         000          00   000       112222   2


Q ss_pred             HHHhhcch-----HHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhh
Q psy8300         202 FLAEWGDR-----SQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQ  250 (256)
Q Consensus       202 FLAE~GDK-----TQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~  250 (256)
                      ..-|.=|=     +=+|.++++  .+|+.++.|..++....-..+-++.+++.+
T Consensus       100 ~~I~~~DlvFSlDSV~A~~git--~~~~ii~~g~~~sIl~lr~~s~~l~~li~r  151 (215)
T TIGR03716       100 LKVELMDIAFSVDSILAAVALS--GQFWVVFLGGIIGILIMRFAATIFVKLLER  151 (215)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333342     345555554  688888999888887777777666665443

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=84.90  E-value=15  Score=32.53  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             hhhhhHh-hhhcc--CCHHHHHHHHHHHHHHHHHHHHHhh
Q psy8300         105 VLSGAFD-MAANI--IPRIWTYYISTVLFIIFGLKMLREG  141 (256)
Q Consensus       105 ~lsv~~G-~~~~~--lp~~~~~~~a~~lFi~fG~~~L~~~  141 (256)
                      .+..++| ++.+.  ++-.-.++++|++++.+|+.|+...
T Consensus        52 l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~   91 (203)
T PF01914_consen   52 LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS   91 (203)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3666777 65544  5788899999999999999999864

These proteins may be transporters. ; GO: 0016021 integral to membrane

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=80.45  E-value=23  Score=32.93  Aligned_cols=163  Identities=19%  Similarity=0.183  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhc---CcHHHHHHHHHHccCCC----cchHHHHHHHHHHhchhccchhhhhhhhhhccccccCCchhhhhh
Q psy8300          36 AALSVIVVSEL---GDKTFFIAAIMAMRHPR----VTVFIGAIAALALMTKFFHHEMLLDKVYVQCTFYTYSPQVLVLSG  108 (256)
Q Consensus        36 ~af~~iflaEl---GDKTq~~a~~LA~r~~~----~~Vf~G~~~al~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lsv  108 (256)
                      .++..+++-|.   +|+-.+++++ +.+.|+    ...+.|..+|+.+=.                           +-.
T Consensus        18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~---------------------------~ll   69 (254)
T COG0861          18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRI---------------------------ILL   69 (254)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH---------------------------HHH
Confidence            56667777775   8998888764 444443    668999988887643                           333


Q ss_pred             hHh-hhhccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHHHHhhhhcchhhhhhhhccccccCccchhhHH
Q psy8300         109 AFD-MAANIIPRIWTYYISTVLFIIFGLKMLREGYKMSPNEGQEELEEVQSDLRKRDDEFEKEALTGDVESGKSYQAQTI  187 (256)
Q Consensus       109 ~~G-~~~~~lp~~~~~~~a~~lFi~fG~~~L~~~~~~~~d~~~~E~~e~~~~l~~~~~~~~~~~~~~~~e~g~~~~~~~~  187 (256)
                      ..| |+.+.-  .+.-++.+..++..++.+++++.    ++...+..|.-++++.++.    . .     .++...    
T Consensus        70 ~~~s~Ll~l~--~~l~~~fg~~L~~~~~~ll~~~~----~~~~k~~~~~~~~~~~~~~----~-~-----~~~~~~----  129 (254)
T COG0861          70 ASISWLLTLT--QPLLYIFGLYLLWRDIKLLLGGL----FLLFKATKELHERLEGEEF----F-V-----NGKLKK----  129 (254)
T ss_pred             HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhcch----hHHHHHHHHHhhhhccccc----c-c-----cccccc----
Confidence            444 554432  22333367777777888887642    1000111111111111110    0 0     000000    


Q ss_pred             HHHHHHHHHHHHHHHHHh--hcchHHHHHHHHhhccCceEEeehHHHHHHHHHHHHHHHhHHhhhc
Q psy8300         188 SLLSRVVIQAFTLTFLAE--WGDRSQLTTIILAAREDVYGVTLGGVLGHSLCTGLAVIGGRFIAQR  251 (256)
Q Consensus       188 ~~~~~~f~taF~liFLAE--~GDKTQLATiaLAa~~~p~~V~iGa~lGl~l~t~laVl~G~~l~~~  251 (256)
                         ...|+.+...+-++-  +.=-|=+|.++++  .+|+.++.|.++|....=..+=.+.+.+.++
T Consensus       130 ---~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~  190 (254)
T COG0861         130 ---ATPFWGAIIQIELADLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH  190 (254)
T ss_pred             ---cCcHHHHHHHHHHHHHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               122333333332221  1224667777776  7788889999988887777777776665543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00