Psyllid ID: psy8308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEcccHHHHcccccccEEEEccHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccHccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccccEccccccccHHHHHHHHHHcccEEEEEcHHHHHHcccccccEEEEcccHHHHHHcccHHHHHccccccccccccccccEEEEEEEccccccccccEccHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDPNYLSILKGRDTALEKIYKEKQLHRIFEknaalspdntalifeeqdkdtLVITNETYSELNSASNQLARGLLHFLhtkavpnenqdgdhiVAVSLAPSSGLIQVLLAVWKAGaaylpldvtapeQRVKHILNEARPLLVIAENEQACENLAykgrtvlslpQLRLLSASlshnnipgesmlhsdnnneqsNDIAIVLYTsgstgipkgvrlphEVILNRLAwqwatfpyspservgaFKTALTFVDAVSEIWGpllsarcggvliiprdvtrnpdqliGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN
Flexible Loop (DISEMBL)
mdpnylsilkgrDTALEKIYKEKQLHRIFeknaalspdnTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGvliiprdvtrnPDQLigtlekykverLVLVPSLLRSMLMFLKMTGTN
Low Complexity Region (SEG)
MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN
Disordered region (IsUnstruct)
*****LSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLS************************DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK*****
Disordered Region (DISOPRED)
MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI***********NEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL******
Disordered Region (DISEMBL)
MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN
Disordered Region (DISPRO)
MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDK**L*ITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
FB|FBgn0000527	879	e "ebony" [Drosophila melanoga	0.929	0.328	0.477	6.3e-69
UNIPROTKB|Q81QP7	2385	dhbF "Nonribosomal peptide syn	0.726	0.094	0.323	5.3e-27
TIGR_CMR|BA_2372	2385	BA_2372 "nonribosomal peptide	0.726	0.094	0.323	5.3e-27
UNIPROTKB|Q4KES9	4901	ofaC "Non-ribosomal peptide sy	0.639	0.040	0.342	1.8e-23
UNIPROTKB|Q4KCD8	6675	rzxB "Polyketide synthase/nonr	0.700	0.032	0.338	1.1e-22
UNIPROTKB|Q4KET0	4367	ofaB "Non-ribosomal peptide sy	0.697	0.049	0.314	1.3e-21
UNIPROTKB|Q48KC2	2151	PSPPH_1925 "Pyoverdine sidecha	0.665	0.096	0.313	1.5e-21
ASPGD|ASPL0000037093	3770	acvA [Emericella nidulans (tax	0.839	0.069	0.292	6.3e-21
UNIPROTKB|Q0VZ70	3912	cmdD "Chondramide synthase cmd	0.823	0.065	0.333	2.8e-20
TAIR|locus:2142908	1040	AT5G35930 [Arabidopsis thalian	0.684	0.204	0.328	5e-20

FB|FBgn0000527 e "ebony" [Drosophila melanogaster (taxid:7227)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 146/306 (47%), Positives = 204/306 (66%)

Query:     6 LSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDT-LVITNETYSELNS 64
             LSI+KG    L++ +  + LHRIFE+      D  ALI++       +  +  +Y ++N 
Sbjct:     7 LSIVKG----LQQDFVPRALHRIFEEQQLRHADKVALIYQPSTTGQGMAPSQSSYRQMNE 62

Query:    65 ASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTA 124
              +N+ AR L+   H + +   N DGD IVAV + PS GL+  LLA+WKAG AYLP+D + 
Sbjct:    63 RANRAARLLVAETHGRFL-QPNSDGDFIVAVCMQPSEGLVTTLLAIWKAGGAYLPIDPSF 121

Query:   125 PEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLH 184
             P  R+ HIL EA+P LVI +++   +   ++G   LS  +L   S  L+ +N+  E ML 
Sbjct:   122 PANRIHHILLEAKPTLVIRDDD--IDAGRFQGTPTLSTTELYAKSLQLAGSNLLSEEMLR 179

Query:   185 SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL 244
               N++      AIVLYTSGSTG+PKGVRLPHE ILNRL WQWATFPY+ +E V  FKTAL
Sbjct:   180 GGNDHT-----AIVLYTSGSTGVPKGVRLPHESILNRLQWQWATFPYTANEAVSVFKTAL 234

Query:   245 TFVDAVSEIWGPLLSARCG-GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
             TFVD+++E+WGPL+   CG  +L++P+ VT++P +L+  LE+YK+ RLVLVP+LLRS+LM
Sbjct:   235 TFVDSIAELWGPLM---CGLAILVVPKAVTKDPQRLVALLERYKIRRLVLVPTLLRSLLM 291

Query:   304 FLKMTG 309
             +LKM G
Sbjct:   292 YLKMEG 297

GO:0007593 "chitin-based cuticle sclerotization" evidence=IMP

GO:0003833 "beta-alanyl-dopamine synthase activity" evidence=IDA;IMP;TAS

GO:0045475 "locomotor rhythm" evidence=NAS

GO:0007623 "circadian rhythm" evidence=NAS

GO:0048067 "cuticle pigmentation" evidence=IGI;IMP

GO:0048022 "negative regulation of melanin biosynthetic process" evidence=IMP

GO:0042440 "pigment metabolic process" evidence=TAS

GO:0001692 "histamine metabolic process" evidence=IMP

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0042417 "dopamine metabolic process" evidence=IDA

GO:0043042 "amino acid adenylylation by nonribosomal peptide synthase" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI;IMP

UNIPROTKB|Q81QP7 dhbF "Nonribosomal peptide synthetase DhbF" [Bacillus anthracis (taxid:1392)]

 Score = 267 (99.0 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
 Identities = 80/247 (32%), Positives = 126/247 (51%)

Query:    58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
             TY +LN  SN+LAR L+     K +       D +VA+++  S  ++  LLAV KAGA Y
Sbjct:  1546 TYEKLNKKSNKLARLLI----AKGI-----GPDQLVALAMPRSLNMVVSLLAVLKAGAGY 1596

Query:   118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS--LSHN 175
             LPLD   P  R+  +L++A+P  V+  ++   E    +   +L +  + ++  S   S +
Sbjct:  1597 LPLDPDYPSDRISFMLHDAKPSCVLTNSDVEIE--CDEELKIL-IDDIEVIEESEKYSED 1653

Query:   176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSE 235
             NI     +     +     IA V+YTSGSTG PKGV +PH+ ++  L      F +   +
Sbjct:  1654 NIDEMERMKPLTPSH----IAYVIYTSGSTGRPKGVMIPHQNVVRLLGATDHWFQFDADD 1709

Query:   236 RVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
              V     +  F  +V EIWGPLL    G ++++P  V+R+P + +  L K KV  L   P
Sbjct:  1710 -VWTMFHSYAFDFSVWEIWGPLLYG--GRLVVVPHTVSRSPKEFLQLLVKEKVTVLNQTP 1766

Query:   296 SLLRSML 302
             S    ++
Sbjct:  1767 SAFYQLM 1773

GO:0003824 "catalytic activity" evidence=ISS

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

TIGR_CMR|BA_2372 BA_2372 "nonribosomal peptide synthetase DhbF" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 267 (99.0 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
 Identities = 80/247 (32%), Positives = 126/247 (51%)

Query:    58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
             TY +LN  SN+LAR L+     K +       D +VA+++  S  ++  LLAV KAGA Y
Sbjct:  1546 TYEKLNKKSNKLARLLI----AKGI-----GPDQLVALAMPRSLNMVVSLLAVLKAGAGY 1596

Query:   118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS--LSHN 175
             LPLD   P  R+  +L++A+P  V+  ++   E    +   +L +  + ++  S   S +
Sbjct:  1597 LPLDPDYPSDRISFMLHDAKPSCVLTNSDVEIE--CDEELKIL-IDDIEVIEESEKYSED 1653

Query:   176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSE 235
             NI     +     +     IA V+YTSGSTG PKGV +PH+ ++  L      F +   +
Sbjct:  1654 NIDEMERMKPLTPSH----IAYVIYTSGSTGRPKGVMIPHQNVVRLLGATDHWFQFDADD 1709

Query:   236 RVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
              V     +  F  +V EIWGPLL    G ++++P  V+R+P + +  L K KV  L   P
Sbjct:  1710 -VWTMFHSYAFDFSVWEIWGPLLYG--GRLVVVPHTVSRSPKEFLQLLVKEKVTVLNQTP 1766

Query:   296 SLLRSML 302
             S    ++
Sbjct:  1767 SAFYQLM 1773

GO:0003824 "catalytic activity" evidence=ISS

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

UNIPROTKB|Q4KES9 ofaC "Non-ribosomal peptide synthetase OfaC" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 254 (94.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
 Identities = 75/219 (34%), Positives = 112/219 (51%)

Query:    87 QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENE 146
             Q GDH VA+ L  S  L+   LAV K GAAY+PLDV AP +R+  +L ++   ++++ +E
Sbjct:  3786 QPGDH-VALLLPRSLDLLVSQLAVSKCGAAYVPLDVNAPAERLGFMLADSGAPVLLSHSE 3844

Query:   147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTG 206
             +  E    +    + L +LR        + + G    H+ N    S  +A V+YTSGSTG
Sbjct:  3845 RVLEAAVQR----VDLDRLRF-------DRLAG----HNPNLALSSEAVAYVMYTSGSTG 3889

Query:   207 IPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL 266
              PKGVR+PH  I  RL        ++P +RV AF +   F  +  E+WGPLL+   G V+
Sbjct:  3890 APKGVRVPHRAI-TRLVINNGYADFNPEDRV-AFASNPAFDASTLEVWGPLLNG--GRVV 3945

Query:   267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL 305
             ++      +P      LE+  V  L L  SL    +  +
Sbjct:  3946 VVDHATLLDPHAFGSLLERTGVSLLFLTTSLFNQYVQLV 3984

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IDA

UNIPROTKB|Q4KCD8 rzxB "Polyketide synthase/nonribosomal peptide synthetase hybrid RzxB" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 267 (99.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 80/236 (33%), Positives = 121/236 (51%)

Query:    67 NQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPE 126
             N+ A  L H+L    +       D +V V +  S  L+  LLA+ KAG AYLPLD   PE
Sbjct:    76 NRRANRLAHYLRELGI-----GPDSLVGVQMERSLELMVALLAILKAGGAYLPLDPGYPE 130

Query:   127 QRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSD 186
             +R+  I+++A   +V+ +  Q  E+   K + V    ++  L    S    P E    S 
Sbjct:   131 ERLALIIDDAAVSVVLTQ--QRFEH-RLKAQAV----EVICLDDPASEELHPSEDNPASI 183

Query:   187 NNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF 246
             N+     D+A V+YTSGSTG PKG  LPH+ I NRL W    +   P+ER+   KT  TF
Sbjct:   184 NS---PGDLAYVIYTSGSTGRPKGCMLPHKAICNRLLWMQRHYQVGPAERI-LQKTPFTF 239

Query:   247 VDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
               +V E++ PLLS  C  +++   +  ++   L+  ++  ++     VPS+LR  L
Sbjct:   240 DVSVWELFLPLLSGAC--LVMAKPEGHKDAHYLVQIIQAQQITICHFVPSMLRFFL 293

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IMP;IDA

GO:0030639 "polyketide biosynthetic process" evidence=IDA

UNIPROTKB|Q4KET0 ofaB "Non-ribosomal peptide synthetase OfaB" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 237 (88.5 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 76/242 (31%), Positives = 118/242 (48%)

Query:    58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
             +Y ELN  +NQLA G  H L     P      D  VA+ +     ++  LLA+ KAG AY
Sbjct:  3805 SYGELNRRANQLA-G--HLLQLGVGP------DSRVAICVERGLEMVVGLLAILKAGGAY 3855

Query:   118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
             +P+D   P +R+ ++L+++ PL V+A+       L    R ++ L QL     +  +  +
Sbjct:  3856 VPIDPGYPAERIAYMLDDSAPLAVLAQGATRAL-LGELARPLVDLDQLAWSGPAPGNPQV 3914

Query:   178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
              G +  H          +A V+YTSGSTG PKG    H  ++NRL W  A +     + V
Sbjct:  3915 EGLTPGH----------LAYVIYTSGSTGQPKGAMNEHRAVVNRLLWMQAQYRLGTEDAV 3964

Query:   238 GAFKTALTFVDAVSEIWGPLLSARCGGVLIIPR-DVTRNPDQLIGTLEKYKVERLVLVPS 296
                KT  +F  +V E + PL +   G  L++ R D  ++P  L   + +  +  L  VPS
Sbjct:  3965 -LQKTPFSFDVSVWEFFWPLFT---GARLVMARPDGHKDPAYLRQVIREQGISTLHFVPS 4020

Query:   297 LL 298
             +L
Sbjct:  4021 ML 4022

GO:0019184 "nonribosomal peptide biosynthetic process" evidence=IDA

UNIPROTKB|Q48KC2 PSPPH_1925 "Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 236 (88.1 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 70/223 (31%), Positives = 119/223 (53%)

Query:    90 DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC 149
             D +V + +  S  ++  LLA+ KAG AY+PLD   PE R+ +++ ++   L++ ++    
Sbjct:  1600 DVLVGICVERSVDMVIGLLAIIKAGGAYVPLDPDYPEDRLAYMMQDSGIGLLLTQSA--- 1656

Query:   150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPK 209
                  +G  V    Q++ L      + + G S  +  N +   N +A V+YTSGSTG PK
Sbjct:  1657 ---LLQGLPV----QVQSLCLDQEGDWLDGYSTANPINLSHPQN-LAYVIYTSGSTGKPK 1708

Query:   210 GVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS-ARCGGVLII 268
             G    H  ++NRL W    +    S+ V   KT  +F  +V E + PLL+ AR    + +
Sbjct:  1709 GAGNSHRALVNRLHWMQKAYALDGSDTV-LQKTPFSFDVSVWEFFWPLLTGARLA--VAL 1765

Query:   269 PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN 311
             P D  R+P++L+ T+ +++V  L  VPS+L++ L   ++ G N
Sbjct:  1766 PGD-HRDPERLVQTIREHQVTTLHFVPSMLQAFLTHPQVEGCN 1807

GO:0003824 "catalytic activity" evidence=ISS

GO:0019290 "siderophore biosynthetic process" evidence=ISS

ASPGD|ASPL0000037093 acvA [Emericella nidulans (taxid:162425)]

 Score = 265 (98.3 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 86/294 (29%), Positives = 146/294 (49%)

Query:    15 ALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLL 74
             A +  + +  LH +FEK AA  PD  A+++E++          TY +LN  +N++A    
Sbjct:  1403 ATDAEFPDTTLHAMFEKEAAQKPDKVAVVYEQRSL--------TYRQLNERANRMA---- 1450

Query:    75 HFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILN 134
             H L +   P  N     I+A+ +  S  +I  +LAVWK G AY+P+D   P+ R+++IL 
Sbjct:  1451 HQLKSDISPKPNS----IIALVVDKSEHMIATILAVWKTGGAYVPIDPEYPDDRIRYILE 1506

Query:   135 EARPLLVIAENEQACENLAYKGRTV-LSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSN 193
             +   + VI++   AC    Y  R   L+   +RL  + +S     G   + +   +  S 
Sbjct:  1507 DTSAIAVISD---AC----YLSRIQELAGESVRLYRSDIS-TQTDGNWSVSNPAPSSTST 1558

Query:   194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPY--SPSERVGAFKTALTFVDAVS 251
             D+A ++YTSG+TG PKGV + H  ++N       TF    +  E + +F   + F   V 
Sbjct:  1559 DLAYIIYTSGTTGKPKGVMVEHHGVVNLQISLSKTFGLRDTDDEVILSFSNYV-FDHFVE 1617

Query:   252 EIWGPLLSARCGGVLIIPRDVTRNP-DQLIGTLEKYKVERLVLVPSLLRSMLMF 304
             ++   +L+   G  L++  D  R+  ++L   +E  +V  L   PS++ SM  F
Sbjct:  1618 QMTDAILN---GQTLVMLNDAMRSDKERLYQYIETNRVTYLSGTPSVI-SMYEF 1667

GO:0042318 "penicillin biosynthetic process" evidence=IDA;RCA;IMP

GO:0050564 "N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase activity" evidence=RCA;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0019748 "secondary metabolic process" evidence=NAS

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IEA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

UNIPROTKB|Q0VZ70 cmdD "Chondramide synthase cmdD" [Chondromyces crocatus (taxid:52)]

 Score = 259 (96.2 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 96/288 (33%), Positives = 143/288 (49%)

Query:    13 DTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARG 72
             DTAL    + + +H  FE+NAA  PD  A++F   D D   I+  TY  LN  +NQLA  
Sbjct:   471 DTALA-CPEAEGVHHAFEQNAARQPDAIAVVF---DGDP--ISRITYGALNERANQLAH- 523

Query:    73 LLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI 132
               H +     P      D +V + +  S  +I  LLAV KAG AYLPLD T P+QR+  I
Sbjct:   524 --HLIQQGVGP------DVVVGIHVERSITMIVALLAVLKAGGAYLPLDPTYPQQRLAFI 575

Query:   133 LNEARPLLVIAENEQACENLAYKGRTVLSLPQLR-LLSASLSHNNIPGESMLHSDNNNEQ 191
             L +A   +++ + E+  ++L      VL L  +   L A+ + +N P    L +      
Sbjct:   576 LADAGAQVILTQ-EKWFDDLPPHTARVLDLDAIAPQLDANAT-SNPP----LRAT----- 624

Query:   192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS 251
             ++ +A ++YTSGSTG PKGV +P     +       T+  +P  RV  F  +L F  +V 
Sbjct:   625 ADHLAYIIYTSGSTGNPKGVLIPRRDTWSVARALAETYALTPESRVLQF-ASLNFDGSVV 683

Query:   252 EIWGPLLSARCGGVL-IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLL 298
             EI   L S   G  L + P++       L   L+++ +  + L PSLL
Sbjct:   684 EITMTLFS---GAALHVAPQEKLLPGAPLNAFLQRHAITHVQLAPSLL 728

GO:0009403 "toxin biosynthetic process" evidence=IDA

GO:0043042 "amino acid adenylylation by nonribosomal peptide synthase" evidence=IDA

TAIR|locus:2142908 AT5G35930 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 5.0e-20, P = 5.0e-20
 Identities = 73/222 (32%), Positives = 114/222 (51%)

Query:    92 IVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN 151
             +VA+ + PS   +  + +V + G A+LPLD + P +RV  +++ +   LVIA    + E+
Sbjct:     4 VVALYMPPSVEYVISVFSVLRCGEAFLPLDPSWPRERVLSLISSSNISLVIACGLSSVES 63

Query:   152 LAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
                  R V   P L L S     +   G S        E+      ++YTSGSTG PKGV
Sbjct:    64 HWLVERNVC--PVL-LFSMDEKLSVETGCSSFVWPCKKERQRKFCYLMYTSGSTGKPKGV 120

Query:   212 RLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD 271
                 + +LNR  W    +P    +R  AFKT++ F+D + E  G +LS+     L+IP  
Sbjct:   121 CGTEQGLLNRFLWMQELYPVVGEQRF-AFKTSVGFIDHIQEFLGAILSSTA---LVIPPF 176

Query:   272 --VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN 311
               +  N   +I  LE+Y + RL+ VPS++R++L  L+  G N
Sbjct:   177 TLLKENMISIIDFLEEYSISRLLAVPSMIRAILPTLQHRGHN 218

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	311
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	8e-60
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-47
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-46
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	9e-37
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-36
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-36
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-36
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-35
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	9e-35
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-33
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	5e-33
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-32
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-31
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-29
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-29
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	6e-28
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	8e-27
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-26
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-24
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-23
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	6e-22
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-20
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-19
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	5e-18
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-17
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-17
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-16
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	4e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	7e-14
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-14
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	7e-13
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-12
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	6e-12
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	7e-12
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-11
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-11
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-11
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	6e-11
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	8e-11
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	4e-10
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	5e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	6e-10
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	7e-10
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	1e-09
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-09
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	8e-09
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-08
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	4e-08
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-08
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	7e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	9e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-07
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-07
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-07
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-07
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-07
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	7e-07
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	8e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	8e-07
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-06
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-06
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-06
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-06
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-06
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-06
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-06
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	5e-06
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-05
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-05
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-05
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-05
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	4e-05
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-05
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	5e-05
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	7e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	8e-05
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-04
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-04
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	3e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-04
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	6e-04
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	7e-04
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-04
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	8e-04
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	0.001
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	0.001
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	0.001
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.001
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	0.001
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	0.001
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	0.001
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.001
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	0.001
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	0.002
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	0.002
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	0.002
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.002
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	0.002
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	0.002
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	0.002
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.002
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	0.002
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	0.003
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	0.003
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	0.004
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	0.004

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  196 bits (502), Expect = 8e-60
 Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 69/271 (25%)

Query: 37  PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
           PD  A++F +Q   +L     TY ELN  +N+LA    H+L  + V         +VA+ 
Sbjct: 1   PDAVAVVFGDQ---SL-----TYRELNERANRLA----HYLRARGVGPG-----DLVAIC 43

Query: 97  LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
           L  S  ++  +LAV KAGAAY+PLD   P +R+ ++L ++   L++ + +    +LAY  
Sbjct: 44  LERSPEMVVAILAVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD----DLAY-- 97

Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
                                                    V+YTSGSTG PKGV + H 
Sbjct: 98  -----------------------------------------VIYTSGSTGRPKGVMVEHR 116

Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII-PRDVTRN 275
            ++N LAW    +  +  +RV     + +F  +V EI+ PLLS   G  L++ P +V R+
Sbjct: 117 GLVNLLAWLQERYGLTAGDRV-LQFASFSFDASVWEIFPPLLS---GATLVLAPPEVLRD 172

Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSMLMFLK 306
           P+ L   L ++++  L LVPSLLR++L  L+
Sbjct: 173 PEALAELLREHRITVLHLVPSLLRALLDALE 203

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  164 bits (417), Expect = 1e-47
 Identities = 83/249 (33%), Positives = 128/249 (51%), Gaps = 17/249 (6%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY EL+  +N+LA  L        V      GD  VA+ L  S   +  +LAV KAGAAY
Sbjct: 1   TYRELDERANRLAAALRA----LGV----GPGDR-VAILLPNSPEWVVAILAVLKAGAAY 51

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +PLD + P +R+ +IL ++   ++I ++E   + L    + ++ L  + +       + +
Sbjct: 52  VPLDPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111

Query: 178 PGESMLHSDNNNE----QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP 233
             E +  +           +D+A ++YTSG+TG PKGV L H  +L   A     F  +P
Sbjct: 112 DDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP 171

Query: 234 SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVL 293
            +RV      L F  +V EI+GPLL    GG L++    T +P +L+  +EKYKV  L  
Sbjct: 172 GDRVLLL-LPLHFDGSVWEIFGPLL---AGGTLVLVPKFTLDPARLLDLIEKYKVTVLYG 227

Query: 294 VPSLLRSML 302
           VP+LLR +L
Sbjct: 228 VPTLLRLLL 236

Length = 412

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  160 bits (408), Expect = 2e-46
 Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 20/247 (8%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY EL+  +N+LAR L                   VAV L  S+ L+  +LAV KAGAAY
Sbjct: 1   TYRELDERANRLARHLRAAGGVGP--------GDRVAVLLERSAELVVAILAVLKAGAAY 52

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +PLD   P +R+  IL +A   L++ +       LA     V+ L  L L +   +    
Sbjct: 53  VPLDPAYPAERLAFILEDAGARLLLTD-SALASRLAGLVLPVILLDPLELAALDDAPAPP 111

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
           P ++    D       D+A V+YTSGSTG PKGV + H  ++N LAW    +   P +RV
Sbjct: 112 PPDAPSGPD-------DLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRV 164

Query: 238 GAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTL-EKYKVERLVLVPS 296
             F  +L+F  +V EI+G LL+     +++ P D  R+   L+  L  ++ V  L L PS
Sbjct: 165 LQF-ASLSFDASVEEIFGALLAG--ATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPS 221

Query: 297 LLRSMLM 303
           LL  +  
Sbjct: 222 LLALLAA 228

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score =  136 bits (344), Expect = 9e-37
 Identities = 80/270 (29%), Positives = 115/270 (42%), Gaps = 68/270 (25%)

Query: 32  NAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDH 91
            A   PD  A+ F +           TY+EL+  +N+LA    H +     P        
Sbjct: 1   RAQTHPDAVAVDFWDGSL--------TYAELDRRANKLAH---HLISLGVRP------GD 43

Query: 92  IVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN 151
           IVA+ L  S  L   +LAV KAGAAY+P+D +AP +R++ I+ ++               
Sbjct: 44  IVALCLERSPWLYVAILAVLKAGAAYVPIDPSAPVERLQFIIEDSGA------------- 90

Query: 152 LAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
                  VL+                               +D A V+YTSGSTG PKGV
Sbjct: 91  -----TVVLTS----------------------------SPDDPAYVIYTSGSTGKPKGV 117

Query: 212 RLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD 271
            + H  I N L  + A     P +RV  F  ++ F  ++ EI+  LL+   GG L+IP +
Sbjct: 118 VITHRNICNFLRAEGAILGIRPGDRVLQF-ASIAFDVSILEIFTTLLA---GGTLVIPPE 173

Query: 272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
             R  D L   L + +V    L PSLL  +
Sbjct: 174 ELRLED-LAEFLNRLRVTVAHLTPSLLALL 202

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score =  136 bits (345), Expect = 1e-36
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 38/267 (14%)

Query: 37  PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
           PD  AL++ ++   +L     TY+ELN  +N+LAR L      + V      GD +VA+ 
Sbjct: 1   PDAIALVYGDR---SL-----TYAELNERANRLARRLRA----RGV----GPGD-VVALL 43

Query: 97  LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
           L  S  L+  +LA+ KAGAAY+PLD   P +R+  +L ++   +++ +   A    A + 
Sbjct: 44  LERSPELVVAILAILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQL 103

Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
             V+   +L    A      +  +             D+A V+YTSGSTG PKGV +PH 
Sbjct: 104 PLVILEEELDAEDAGPPAPAVDAD-------------DLAYVMYTSGSTGRPKGVAVPHR 150

Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS-EIWGPLLS-ARCGGVLIIPRDVTR 274
            ++ RL          P +R     + L+F DA + EIWG LL+  R    ++I ++   
Sbjct: 151 GVV-RLVRNTNYIALDPDDRF-LQLSPLSF-DASTFEIWGALLNGGRL---VLIDKETLL 204

Query: 275 NPDQLIGTLEKYKVERLVLVPSLLRSM 301
           +PD+L   + +  V  L L  +L   +
Sbjct: 205 DPDRLARLIAEQGVTVLWLTAALFNQL 231

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  138 bits (348), Expect = 1e-36
 Identities = 93/279 (33%), Positives = 137/279 (49%), Gaps = 36/279 (12%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           +H +FE+ AA +PD  AL+   Q          TY+EL++ +N+LAR L     +  V  
Sbjct: 229 IHLLFEEQAATTPDAVALVRGGQQL--------TYAELDARANRLARLL----ISLGVGP 276

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                   VA+    S  L+  LLAV KAGAAY+PLD   P +R+ +IL ++RP L++ +
Sbjct: 277 GET-----VAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQ 331

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
                +         + LP L L  A     +                + +A ++YTSGS
Sbjct: 332 AHLRVD--------DVGLPGLALDDALSEIPDTDPIPQAL------LGDALAYIIYTSGS 377

Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGG 264
           TG PKGVR+ H  + N L    A F     +RV A   +L+F  +V EI+G LL    G 
Sbjct: 378 TGQPKGVRIEHRALANLLNDAGARFGLDADDRVLAL-ASLSFDASVFEIFGALL---EGA 433

Query: 265 VLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            L++ P  +  +P  L+  LE   +  L+LVP LLR +L
Sbjct: 434 RLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLL 472

Length = 642

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  137 bits (346), Expect = 6e-36
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 31/284 (10%)

Query: 22  EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
           ++ +HR+FE+    +P+  AL F E+   TL      Y+ELN  +N+LA  L+       
Sbjct: 510 QRGVHRLFEEQVERTPEAPALAFGEE---TL-----DYAELNRRANRLAHALIE------ 555

Query: 82  VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
                   D +V V++  S  ++  LLA+ KAG AY+PLD   P +R+ ++L ++   L+
Sbjct: 556 ---RGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLL 612

Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
           ++++    +     G  VL L +        S  N PG   L+ +N       +A V+YT
Sbjct: 613 LSQSHLGRKLPLAAGVQVLDLDRPAAWLEGYSEEN-PGTE-LNPEN-------LAYVIYT 663

Query: 202 SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261
           SGSTG PKG    H  + NRL W    +     + V   KT  +F  +V E + PL+S  
Sbjct: 664 SGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTV-LQKTPFSFDVSVWEFFWPLMS-- 720

Query: 262 CGGVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304
            G  L++      R+P +L+  + +  V+ L  VPS+L++ L  
Sbjct: 721 -GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQD 763

Length = 5163

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score =  132 bits (335), Expect = 1e-35
 Identities = 77/267 (28%), Positives = 120/267 (44%), Gaps = 70/267 (26%)

Query: 37  PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
           PD  AL  +++   TL     +Y+EL+  SNQLA      L    V      GD  V V 
Sbjct: 1   PDAIALRDDDR---TL-----SYAELDERSNQLA----ARLRALGVG----PGD-RVGVL 43

Query: 97  LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
           L  S+ L+  LLA+ KAGAAY+PLD + P +R++++L +A P L++ +            
Sbjct: 44  LERSADLVAALLAILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLTD------------ 91

Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
                                               +D+A V+YTSGSTG PKGV + H 
Sbjct: 92  -----------------------------------PDDLAYVIYTSGSTGKPKGVEVSHR 116

Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII-PRDVTRN 275
            ++N L           S+R+ A  T ++F  +V E+  PLL    G  ++I   +  R+
Sbjct: 117 ALVNFLLSMARRPGLGASDRLLAV-TTISFDISVLELLLPLL---SGATVVIASAETVRD 172

Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSML 302
           P++L   +   ++  +   P+  R ML
Sbjct: 173 PERLARLIADERITIMQATPATWR-ML 198

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  133 bits (337), Expect = 9e-35
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 31/292 (10%)

Query: 12  RDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLAR 71
           R  A    Y    +H++ E  A   P+  AL+F EQ    L     +Y+ELN  +N+LA 
Sbjct: 501 RWNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQ---VL-----SYAELNRQANRLAH 552

Query: 72  GLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKH 131
                +     P      D +V +++  S  ++  LLAV KAG AY+PLD   P+ R+ +
Sbjct: 553 ---VLIAAGVGP------DVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAY 603

Query: 132 ILNEARPLLVIAENEQACENLAYKGRTVLSLPQL-RLLSASLSHNNIPGESMLHSDNNNE 190
           +L+++   L++ ++    +     G   L L +   LL     HN               
Sbjct: 604 MLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEPADLLCGYSGHNPEV----------AL 653

Query: 191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV 250
             +++A V+YTSGSTG PKGV + H  + N +         +  + +    +   F   V
Sbjct: 654 DPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSM-LMVSTFAFDLGV 712

Query: 251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           +E++G L  A    + ++P D  R+ +     +    V  L +VPS L+++L
Sbjct: 713 TELFGAL--ASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALL 762

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  129 bits (326), Expect = 3e-33
 Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 29/278 (10%)

Query: 25   LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
            +H++ E  AA +P+  AL+F EQ+         TY ELN  +N+LA    H L    V  
Sbjct: 1576 VHQLIEDQAAATPEAVALVFGEQEL--------TYGELNRRANRLA----HRLIALGV-- 1621

Query: 85   ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                 + +V +++  S  ++  LLA+ KAG AY+PLD   P +R+ +++ ++   L++ +
Sbjct: 1622 ---GPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQ 1678

Query: 145  NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
            +      L            LR L      + + G S  +   N    N +A V+YTSGS
Sbjct: 1679 SH-LQARLP-------LPDGLRSLVLDQEDDWLEGYSDSNPAVNLAPQN-LAYVIYTSGS 1729

Query: 205  TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGG 264
            TG PKG    H  ++NRL      +  S ++ V    T+  F  +V E++ PL++     
Sbjct: 1730 TGRPKGAGNRHGALVNRLCATQEAYQLSAADVV-LQFTSFAFDVSVWELFWPLING--AR 1786

Query: 265  VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            ++I P    R+P+QLI  +E+ +V  L  VPS+L+ +L
Sbjct: 1787 LVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Length = 3956

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score =  128 bits (324), Expect = 5e-33
 Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 35/270 (12%)

Query: 30  EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
            + AA +PD  AL      +        +Y E+      LA    + L  + V    + G
Sbjct: 465 AQQAAKTPDAPALAD---ARYQF-----SYREMREQVVALA----NLLRERGV----KPG 508

Query: 90  DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC 149
           D  VAV+L  S  L   L A+ +AGAA+LPLD   P+ R+K +L +ARP L+I   +Q  
Sbjct: 509 D-SVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLP 567

Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPK 209
               +     L+        A        G + L       Q +  A +++TSGSTG PK
Sbjct: 568 R---FADVPDLTSLCYNAPLAP------QGAAPLQLS----QPHHTAYIIFTSGSTGRPK 614

Query: 210 GVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII- 268
           GV +    I+NRL W    +P +  + V   KT  +F  +V E + P +    G  L++ 
Sbjct: 615 GVMVGQTAIVNRLLWMQNHYPLTADDVV-LQKTPCSFDVSVWEFFWPFI---AGAKLVMA 670

Query: 269 PRDVTRNPDQLIGTLEKYKVERLVLVPSLL 298
             +  R+P  +     +Y V     VPS+L
Sbjct: 671 EPEAHRDPLAMQQFFAEYGVTTTHFVPSML 700

Length = 1296

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  125 bits (315), Expect = 6e-32
 Identities = 78/281 (27%), Positives = 141/281 (50%), Gaps = 31/281 (11%)

Query: 22   EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
             + +H++  + A ++PD  A++F+E+    L     TY+ELN  +N+LA    H L  + 
Sbjct: 4550 TRCVHQLVAERARMTPDAVAVVFDEE---KL-----TYAELNRRANRLA----HALIARG 4597

Query: 82   VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
            V  E      +V +++  S+ ++  LLAV KAG AY+PLD   P +R+ +++ ++   L+
Sbjct: 4598 VGPEV-----LVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALL 4652

Query: 142  IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
            + ++          G   L+L +        +H+       LH DN       +A V+YT
Sbjct: 4653 LTQSHLLQRLPIPDGLASLALDRDEDWEGFPAHDP---AVRLHPDN-------LAYVIYT 4702

Query: 202  SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261
            SGSTG PKGV + H  ++N L      +  +P +RV  F  + +F  +   ++ PL+   
Sbjct: 4703 SGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQF-MSFSFDGSHEGLYHPLI--- 4758

Query: 262  CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
             G  ++I  D   +P++L   + +++V  LV  P  L+ + 
Sbjct: 4759 NGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLA 4799

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score =  122 bits (309), Expect = 5e-31
 Identities = 72/302 (23%), Positives = 130/302 (43%), Gaps = 32/302 (10%)

Query: 3    PNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSEL 62
                 +L   +        E+ +H++ E   A +P+  AL+F +Q          +Y+EL
Sbjct: 3075 HERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQL--------SYAEL 3126

Query: 63   NSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV 122
            N  +N+LA  L+               D +V V++  S  +I  LLAV KAG AY+PLD 
Sbjct: 3127 NRRANRLAHRLI---------AIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177

Query: 123  TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM 182
              P +R+ +++ ++   L++ +              +  LP     +A            
Sbjct: 3178 EYPRERLAYMIEDSGVKLLLTQ-----------AHLLEQLPAPAGDTALTLDRLDLNGYS 3226

Query: 183  LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKT 242
             ++ +      ++A V+YTSGSTG PKGV + H  + N L W    +    ++RV  F  
Sbjct: 3227 ENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLF-M 3285

Query: 243  ALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            + +F  A       L+   CGG L++  +   +P++L   +  +++      P+ L+   
Sbjct: 3286 SFSFDGAQERFLWTLI---CGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFA 3342

Query: 303  MF 304
              
Sbjct: 3343 ED 3344

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score =  117 bits (295), Expect = 3e-29
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 31/291 (10%)

Query: 8    ILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASN 67
            IL   D   E   +   +H+   + AA +P+  A++F +Q          +Y+EL+S +N
Sbjct: 1988 ILADWDRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFGDQHL--------SYAELDSRAN 2039

Query: 68   QLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQ 127
            +LA  L      + V  E +     VA++   S  L+  LLAV KAG AY+PLD   P +
Sbjct: 2040 RLAHRLR----ARGVGPEVR-----VAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAE 2090

Query: 128  RVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDN 187
            R+ ++L ++   L++ +           G   L L +    +             L  +N
Sbjct: 2091 RLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRDAEWADYPDTAP---AVQLAGEN 2147

Query: 188  NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV 247
                   +A V+YTSGSTG+PKGV + H  ++         +  SP++    F  + +F 
Sbjct: 2148 -------LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQF-MSFSFD 2199

Query: 248  DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLL 298
             A  + + PLL+   G  ++I  D   +P+QL   +E++ V  L   P  L
Sbjct: 2200 GAHEQWFHPLLN---GARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYL 2247

Length = 5163

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score =  115 bits (289), Expect = 4e-29
 Identities = 81/279 (29%), Positives = 115/279 (41%), Gaps = 74/279 (26%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           LH + E  A  +PD  A++  ++   +L     TY+ELN  +N+LA  L           
Sbjct: 1   LHELVEAQAERTPDAIAVVCGDE---SL-----TYAELNRRANRLAARLRAAGVGP---- 48

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                +  V V L  S  L+  LLAV KAGAAY+PLD   P +R+ +IL +A   LV+  
Sbjct: 49  -----ESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT- 102

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
                                                           +D+A V+YTSGS
Sbjct: 103 ----------------------------------------------DPDDLAYVIYTSGS 116

Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAF-KTALTFVDAVSEIWGPLLSARCG 263
           TG PKGV + H      L  QWA   +S  E  G    T++ F  +V EI+ PL     G
Sbjct: 117 TGRPKGVAIEHRNAAALL--QWAAAVFSAEELAGVLAATSICFDLSVFEIFVPLS---TG 171

Query: 264 GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           G +++  +       L     K +V  +  VPS  R +L
Sbjct: 172 GRVVLADNAL----ALPDLPAKAEVTLINTVPSAARELL 206

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score =  112 bits (282), Expect = 6e-28
 Identities = 78/268 (29%), Positives = 117/268 (43%), Gaps = 37/268 (13%)

Query: 37  PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
           PD TA+I       TL     TY EL   +N +A      L    V      GD  VAV 
Sbjct: 1   PDATAVI---DGAGTL-----TYGELARRANAIA----AALRAAGVAP----GDL-VAVV 43

Query: 97  LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
           +      I  +L +  AGAAY+P+D   P +R   IL  A    V+ +            
Sbjct: 44  MPKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAAILARAGARAVLTD------------ 91

Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
              L+ P+       ++ +    ES        +   D+A V++TSGSTG PKGV + H 
Sbjct: 92  -PGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPD-DLAYVIFTSGSTGEPKGVMITHR 149

Query: 217 VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRN- 275
             +N +      F   P++RV A  +AL F  +V +I+G L     G  L++P +  R  
Sbjct: 150 AAVNTILDVNRRFGVGPADRVLAL-SALHFDLSVYDIFGAL---SAGAALVLPDEARRRD 205

Query: 276 PDQLIGTLEKYKVERLVLVPSLLRSMLM 303
           PD     ++++ V     VP+L+  ML+
Sbjct: 206 PDHWAELVQRHGVTVWNSVPALM-DMLL 232

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  109 bits (274), Expect = 8e-27
 Identities = 75/285 (26%), Positives = 119/285 (41%), Gaps = 25/285 (8%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L  + E+ A  +PD  ALIF  +          TY EL+  +N+LA  L           
Sbjct: 13  LASLLERAARRNPDRPALIFLGRGGRL------TYRELDRRANRLAAALQALGVKP---- 62

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI-- 142
               GD  VA+ L  S   +   LA  +AGA  +PL+     + + +ILN+A   ++I  
Sbjct: 63  ----GDR-VAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITS 117

Query: 143 ---AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
              A   +A          VL +                      +D      +D+A +L
Sbjct: 118 AEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLL 177

Query: 200 YTSGSTGIPKGVRLPHE-VILNRLA-WQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL 257
           YTSG+TG+PKGV L H  ++ N            +P + V ++   L  +  +       
Sbjct: 178 YTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSW-LPLFHIFGLIVGLLAP 236

Query: 258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           L    GG L++      +P++++  +EKYKV  L  VP+ LR +L
Sbjct: 237 LLG--GGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELL 279

Length = 534

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  108 bits (272), Expect = 1e-26
 Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 69/273 (25%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           AA  PD  AL+      DTL     TY+EL   +++LA  LL        P         
Sbjct: 1   AAKHPDRPALVV---GGDTL-----TYAELKERADRLAARLLALGGRAGDP--------- 43

Query: 93  VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENL 152
           VAV    S      +LA  KAGAAY+PLD + P +R+  IL  A P  ++A+ +      
Sbjct: 44  VAVYGHKSPDAYAAILACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVADPD------ 97

Query: 153 AYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVR 212
                                                    D+A +L+TSGSTG PKGV+
Sbjct: 98  -----------------------------------------DLAYILFTSGSTGKPKGVQ 116

Query: 213 LPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL-IIPRD 271
           + H  + + L W    F  +  +         +F  +V +++  L S   G  L +IP++
Sbjct: 117 ISHANLASFLDWMVEDFDLTEGDVFSNQ-APFSFDLSVFDLFPALAS---GATLYVIPKE 172

Query: 272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304
              +P  L   L+++ +   V VPS    +L+ 
Sbjct: 173 QIADPLALFEFLKEHGLTVWVSVPSFASLLLLS 205

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score =  103 bits (258), Expect = 2e-24
 Identities = 87/271 (32%), Positives = 137/271 (50%), Gaps = 33/271 (12%)

Query: 30   EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAV-PNENQD 88
             + A  +P+  AL+++    D        Y+EL++ +N+LA    H+L  K V P     
Sbjct: 1138 NEQARQTPERIALVWDGGSLD--------YAELHAQANRLA----HYLRDKGVGP----- 1180

Query: 89   GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA 148
             D  VA++   S  L+  LLA+ KAG AY+PLD   P +R+ ++L ++   L++ ++   
Sbjct: 1181 -DVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLL 1239

Query: 149  CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIP 208
                  +G + ++L  L L S        PG   LH DN       +A V+YTSGSTG P
Sbjct: 1240 ERLPQAEGVSAIALDSLHLDSWPSQ---APGLH-LHGDN-------LAYVIYTSGSTGQP 1288

Query: 209  KGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII 268
            KGV   H  +  RL W  AT+    S+ V   K  ++F  +V E + PL++  C  VL  
Sbjct: 1289 KGVGNTHAALAERLQWMQATYALDDSD-VLMQKAPISFDVSVWECFWPLITG-CRLVLAG 1346

Query: 269  PRDVTRNPDQLIGTLEKYKVERLVLVPSLLR 299
            P +  R+P ++   +++Y V  L  VP LL+
Sbjct: 1347 PGE-HRDPQRIAELVQQYGVTTLHFVPPLLQ 1376

Length = 4334

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 99.5 bits (248), Expect = 5e-23
 Identities = 94/309 (30%), Positives = 136/309 (44%), Gaps = 65/309 (21%)

Query: 12   RDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLAR 71
            RD  LE+ Y       +FE   A  P   A    +Q           Y+ELN A+N+L  
Sbjct: 3714 RDYPLEQSYVR-----LFEAQVAAHPQRIAASCLDQQWS--------YAELNRAANRLGH 3760

Query: 72   GLLHFLHTKAVPNENQDG-DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVK 130
             L               G D  VA+       L+ +++  +KAGA YLPLD   P QR++
Sbjct: 3761 ALR----------AAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQ 3810

Query: 131  HILNEAR-PLLVIAENEQACENLAYKGRTVLSL------PQLRLL-----SASLSHNNIP 178
             I+  +R P+LV      AC     + R +L        P+L +          SHN  P
Sbjct: 3811 RIIELSRTPVLVC---SAAC---REQARALLDELGCANRPRLLVWEEVQAGEVASHN--P 3862

Query: 179  GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPY-SPSERV 237
            G   ++S  +N     +A V+YTSGSTG+PKGV +    +LN    Q +  PY + SE  
Sbjct: 3863 G---IYSGPDN-----LAYVIYTSGSTGLPKGVMVEQRGMLNN---QLSKVPYLALSEAD 3911

Query: 238  GAFKTALTFVDAVSEIW----GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVL 293
               +TA    D    +W     PL  AR   V I+P  +  +P  L+  ++   +  L  
Sbjct: 3912 VIAQTASQSFDI--SVWQFLAAPLFGAR---VEIVPNAIAHDPQGLLAHVQAQGITVLES 3966

Query: 294  VPSLLRSML 302
            VPSL++ ML
Sbjct: 3967 VPSLIQGML 3975

Length = 4334

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 95.4 bits (238), Expect = 6e-22
 Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 33/278 (11%)

Query: 37  PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
           PD+TA+IF+ +D     +T   Y +L     +LA  L      K        GD  VA+ 
Sbjct: 24  PDDTAIIFDGEDGLFRELT---YGDLRREVARLANALKDLGGVK--------GDR-VAIY 71

Query: 97  LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
           +  S   +  LLA  + GA    +      + V   + +  P ++IA++          G
Sbjct: 72  MPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF-----RNG 126

Query: 157 RTVLSLPQLRLLSAS---LSHNNIPGESMLHSDNNNEQ-----SNDIAIVLYTSGSTGIP 208
           + +  L     + +S   +    +  +  +   +   +     ++D   +LYTSG+TG P
Sbjct: 127 KEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKP 186

Query: 209 KGVRLPHEVILNRLAWQWAT-FPYSPSERVGAFKTALTF--VDAVSEIWGPLLSARCGGV 265
           KG+   H   L              P +R   + ++           ++ PL S      
Sbjct: 187 KGIVHSHGGYLVEHRLTAKFHGDLLPGDRF--WNSSDPGWIYGLWYSVFSPLASGAT--T 242

Query: 266 LIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
           ++       +P++L   LEKYKV      P+ LR  LM
Sbjct: 243 VLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLR-RLM 279

Length = 528

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 34/300 (11%)

Query: 3    PNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSEL 62
                 +L+  +    +   E+ +HR+FE+    +PD  AL F EQ           Y+EL
Sbjct: 3037 EERGQLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQRLS--------YAEL 3088

Query: 63   NSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV 122
            N  +N+LA    H L  + V       D +V V++  S  ++  LLA+ KAG AY+PLD 
Sbjct: 3089 NRRANRLA----HRLIERGV-----GPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDP 3139

Query: 123  TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM 182
              PE+R+ ++L ++   L+++++              L LP  + +            + 
Sbjct: 3140 EYPEERLAYMLEDSGAQLLLSQSH-------------LRLPLAQGVQVLDLDRGDENYAE 3186

Query: 183  LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKT 242
             +        N +A V+YTSGSTG PKGV + H  + N L W    +     +RV  F T
Sbjct: 3187 ANPAIRTMPEN-LAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQF-T 3244

Query: 243  ALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
              +F   V E++ PL+S     V++   +  R+P  L+  +    V+ L   PS+L++ L
Sbjct: 3245 TFSFDVFVEELFWPLMSG--ARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFL 3302

Length = 5163

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 35/282 (12%)

Query: 23  KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAV 82
           K +  I    A   P   A  ++ Q+         TY +L   S++LA  +   +  K  
Sbjct: 1   KLIEAIQA-FAETYPQTIAYRYQGQEL--------TYQQLKEQSDRLAAFIQKRILPKKS 51

Query: 83  PNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI 142
           P         + V       ++   L   K+G AY+P+D + P +R++ I+  A P LVI
Sbjct: 52  P---------IIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVI 102

Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTS 202
              E + + +  +   +++L  L       S   +  +  +  D+N         ++YTS
Sbjct: 103 HTAELSIDAVGTQ---IITLSALEQAET--SGGPVSFDHAVKGDDNY-------YIIYTS 150

Query: 203 GSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC 262
           GSTG PKGV++ H+ +++   W  A FP     +    +   +F  +V +++  L S   
Sbjct: 151 GSTGNPKGVQISHDNLVSFTNWMLADFP-LSEGKQFLNQAPFSFDLSVMDLYPCLAS--- 206

Query: 263 GGVLI-IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
           GG L  + +D+T N   L   L K  +   V  PS +   L+
Sbjct: 207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLL 248

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 83.7 bits (208), Expect = 5e-18
 Identities = 67/283 (23%), Positives = 110/283 (38%), Gaps = 57/283 (20%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L  + E+ A   PD  AL F  +    L     TY+EL+  S++ A     +L    V  
Sbjct: 1   LADLLERAARRFPDRPALTFFGR---KL-----TYAELDELSDRFAA----YLQQLGV-- 46

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
             + GD  VA+ L            + KAGA  +P++     + ++H LN++   ++I  
Sbjct: 47  --KKGDR-VALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV- 102

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
                   A      L+      L   LS                   +D+A++ YT G+
Sbjct: 103 --------AISFEDALASGAPLPLPVELSP------------------DDLAVLQYTGGT 136

Query: 205 TGIPKGVRLPHE-VILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA 260
           TG+PKG  L H  ++ N    Q   W        +R   F TAL            LL  
Sbjct: 137 TGVPKGAMLTHRNLVAN--VQQIAAWVKDLREGEDR---FLTALPLFHIFGLTVNMLLGL 191

Query: 261 RCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           R G   +++P      P  ++  +++Y+      VP+L  ++L
Sbjct: 192 RLGATNVLVPN---FRPINVLKEIKRYRFTIFPGVPTLYNALL 231

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 63/266 (23%), Positives = 105/266 (39%), Gaps = 39/266 (14%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           T+++L   + +LA+GL             + GD +VA+    S     V L    AG   
Sbjct: 12  TFADLLKKALRLAKGL--------RKLGLKQGD-VVALISPNSIEFPPVFLGCLAAGGIV 62

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENE------QACENLAYKGRTVLSLPQLRLLSAS 171
              + +     + H L  ++P L+  + +      +A + L    R ++       L ++
Sbjct: 63  SAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIV-------LDSA 115

Query: 172 LSHNNIPGESMLHSDNNNEQS----------NDIAIVLYTSGSTGIPKGVRLPHEVILNR 221
                +  E +L      E            +D A +LY+SG+TG+PKGV L H+ I+  
Sbjct: 116 -PDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIAN 174

Query: 222 LAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIG 281
           L+    T   +P        T L F      +   L S  CG  +II      + +  + 
Sbjct: 175 LSQVQDTLKGNPDSSNDVVLTFLPF-YHAYGLTTTLASLLCGATVIIMPKF--DSETFLK 231

Query: 282 TLEKYKVERLVLVPSLLRSMLMFLKM 307
            +EKYKV  L LVP +    +   K 
Sbjct: 232 LIEKYKVTSLFLVPPI---AVALAKS 254

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 59/285 (20%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           +  I E+ A   PD  A  +  +          TY +L   S+ LA  +         P 
Sbjct: 5   IETI-EEFAQTQPDFPAYDYLGE-------KL-TYGQLKEDSDALAAFIDSLKLPDKSP- 54

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                   + V    S  ++   L   KAG AY+P+DV++P +R++ I+  A+P L+IA 
Sbjct: 55  --------IIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIAT 106

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
            E     L   G  V++L +   L    +  N          ++N        +++TSG+
Sbjct: 107 EE---LPLEILGIPVITLDE---LKDIFATGNPYDFDHAVKGDDN------YYIIFTSGT 154

Query: 205 TGIPKGVRLPHEVILNRLAW-----------QW-ATFPYSPSERVGAFKTALTFVDAVSE 252
           TG PKGV++ H+ +++   W           Q+    PYS       F   L+ +D    
Sbjct: 155 TGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYS-------FD--LSVMD---- 201

Query: 253 IWGPLLSARCGGVLI-IPRDVTRNPDQLIGTLEKYKVERLVLVPS 296
              P L++  GG L+ +P+D+T N  QL  TL +  +   V  PS
Sbjct: 202 -LYPTLAS--GGTLVALPKDMTANFKQLFETLPQLPINVWVSTPS 243

Length = 503

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 73/195 (37%)

Query: 38  DNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97
           D  AL+   +        + TY EL++ S +LA+ LL              GD  VAV  
Sbjct: 1   DRIALVDGGR--------SLTYGELDARSGRLAKALLALGLLP--------GDR-VAVLA 43

Query: 98  APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR 157
             S+  + + LA+W+AG   +PL+ + P   + +IL++++P L++               
Sbjct: 44  PKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV--------------- 88

Query: 158 TVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEV 217
                                               D A+++YTSG+TG PKGV L H  
Sbjct: 89  ------------------------------------DPALIIYTSGTTGRPKGVVLTHGN 112

Query: 218 ILNRL-----AWQWA 227
           +         AW+W 
Sbjct: 113 LAANARALVEAWRWT 127

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 32/210 (15%)

Query: 27  RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN 86
            +FE+ AA  PD  AL+FE+Q          +Y+ELN+ +N+ A    H+   + V    
Sbjct: 41  DVFEEAAARHPDRPALLFEDQSI--------SYAELNARANRYA----HWAAARGV---- 84

Query: 87  QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENE 146
             GD +VA+ +      +   L + K GA    L+       + H LN      +I   E
Sbjct: 85  GKGD-VVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143

Query: 147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPG-------ESMLHSDNNNE-----QSND 194
                 A++          RL  A     + P         +      N        + D
Sbjct: 144 LVE---AFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKD 200

Query: 195 IAIVLYTSGSTGIPKGVRLPHEVILNRLAW 224
            A  +YTSG+TG+PK   + H   L  +  
Sbjct: 201 TAFYIYTSGTTGLPKAAVMSHMRWLKAMGG 230

Length = 600

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 59/297 (19%)

Query: 28  IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
           +FE  A   PD  AL+  ++      +T   Y+EL   +N+LA    H+L  + +     
Sbjct: 8   LFEAVADAVPDRVALVCGDR-----RLT---YAELEERANRLA----HYLIAQGL----G 51

Query: 88  DGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV----TAPEQRVKHILNEARPLLVIA 143
            GDH V +        ++ +L  +KA A   P++V       E  ++++L+++  + ++ 
Sbjct: 52  PGDH-VGIYARNRIEYVEAMLGAFKARAV--PVNVNYRYVEDE--LRYLLDDSDAVALVY 106

Query: 144 ENEQACENLAYKGRTVL-SLPQLRLL-------SASLSHNNIPGESMLHS----DNNNEQ 191
           E E      A +   VL  LP+LR L          L    +  E  L +     +  E+
Sbjct: 107 ERE-----FAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGER 161

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHE----VILNRLAWQWATFPYSP---SERVGAFKTAL 244
           S D   +LYT G+TG+PKGV    E    V+L    +            ++R  A     
Sbjct: 162 SPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMR 221

Query: 245 TFV-------DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLV 294
            F              +  L S   G  +++  DV  + D++  T+E+ KV  + +V
Sbjct: 222 RFPAPPLMHGAGQWAAFAALFS---GQTVVLLPDVRFDADEVWRTIEREKVNVITIV 275

Length = 533

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253
           D A +LYTSG+TG PKGV L H  +L            +  + + +    L  V  V   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSV-LPLFHV--VGGG 57

Query: 254 WGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN 311
            G L +   GG V++        P   +  +E+Y+V  L  VP+L  ++    +  G +
Sbjct: 58  SGLLGALLAGGTVVLYEGF--PFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYD 114

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 68.3 bits (168), Expect = 7e-13
 Identities = 80/301 (26%), Positives = 122/301 (40%), Gaps = 61/301 (20%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           + RI    A   PD  A+ F+ +          TY+EL+   N+LA    + L    V  
Sbjct: 8   IGRILRHGARKHPDKEAVYFDGR--------RTTYAELDERVNRLA----NALRALGV-- 53

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV-TAPEQRVKHILNEARPLLVIA 143
             + GD  VAV    S   ++   AV K GA   P+++   PE+ + +ILN+A   +V+ 
Sbjct: 54  --KKGDR-VAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEE-IAYILNDAEDRVVLV 109

Query: 144 ENE------QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML--HSDNNNEQ---S 192
           ++E           L      ++         A         E +L   SD  +      
Sbjct: 110 DSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEY---EELLAAASDTFDFPDIDE 166

Query: 193 NDIAIVLYTSGSTGIPKGVRLPH-EVILNRLAWQWATFPYSPSER---------VGAFKT 242
           ND A +LYTSG+TG PKGV L H  + L+ LA   A    S  +          V A   
Sbjct: 167 NDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVC-AWLKLSRDDVYLVIVPMFHVHA--- 222

Query: 243 ALTFVDAVSEIWG-PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
                      WG P L+   G   +IPR    +P+ L+  +E  +V     VP++ + +
Sbjct: 223 -----------WGLPYLALMAGAKQVIPRRF--DPENLLDLIETERVTFFFAVPTIWQML 269

Query: 302 L 302
           L
Sbjct: 270 L 270

Length = 521

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 45/280 (16%)

Query: 25   LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
            LH +F   AA +P   AL F  Q   TL     +Y+EL++ +N+LAR L           
Sbjct: 2190 LHGLFAAQAARTPQAPALTFAGQ---TL-----SYAELDARANRLARAL----------R 2231

Query: 85   ENQDGDHI-VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA 143
            E   G  + V ++L  S  ++  LLA+ KAG AY+PLD   P +R+ +++ ++   L+++
Sbjct: 2232 ERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLS 2291

Query: 144  ENEQACENLAYKGRTVLSLPQ------LRLLSASLSHNNIPGESMLHSDNNNEQSNDIAI 197
            +              +  LP       L   +A+L+        +             A 
Sbjct: 2292 DRALF--------EALGELPAGVARWCLEDDAAALAA--YSDAPL----PFLSLPQHQAY 2337

Query: 198  VLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE-IWGP 256
            ++YTSGSTG PKGV + H  I          F     +    F + + F DA SE +  P
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYS-INF-DAASERLLVP 2395

Query: 257  LLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPS 296
            LL   CG  +++        +++   + + +V  L   PS
Sbjct: 2396 LL---CGARVVLRAQGQWGAEEICQLIREQQVSILGFTPS 2432

Length = 4334

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.7 bits (161), Expect = 6e-12
 Identities = 69/289 (23%), Positives = 107/289 (37%), Gaps = 52/289 (17%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           A    D  A +F +Q          TY+ELN+   + A  L      K        GD  
Sbjct: 15  ARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGK--------GDR- 57

Query: 93  VAVSLAPSSGLIQVLLAVWKAGAAYLPLD--VTAPEQRVKHILNEARPLLVIAENEQACE 150
           VA+    S   +   L   KAGA  +PL+   TA E    +IL       +         
Sbjct: 58  VAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADE--AAYILARGDAKALFVL--GLFL 113

Query: 151 NLAYKGRTVLSLPQLRLL-------SASLSHNNIPGESMLHSDNNNEQSN-----DIAIV 198
            + Y       LP L  +           +         L + +  E++      D+A +
Sbjct: 114 GVDYSA--TTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADI 171

Query: 199 LYTSGSTGIPKGVRLPHEVILNRLAWQWAT-FPYSPSERVGAFKTAL----TFVDAVSEI 253
           L+TSG+TG PKG  L H  +L   A  WA     +  +R  A   A      F      +
Sbjct: 172 LFTSGTTGRPKGAMLTHRQLL-SNAADWAEYLGLTEGDRYLA---ANPFFHVFGYKAG-V 226

Query: 254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
             PL+  R   +L +P     +PD++   +E  ++  L   P++  S+L
Sbjct: 227 NAPLM--RGATILPLP---VFDPDEVFRLIETERITVLPGPPTMYNSLL 270

Length = 513

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 59/288 (20%), Positives = 104/288 (36%), Gaps = 60/288 (20%)

Query: 17  EKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHF 76
              + ++ L  +   NAA  PD TA++    D    +    TY EL++A ++LA GLL  
Sbjct: 9   AGYWGDQTLGDLLAANAARHPDRTAVV----DGPRRL----TYRELDAAVDRLAAGLLAL 60

Query: 77  LHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEA 136
                       GD ++ V L   +  + +  A++K GA  +          + H   ++
Sbjct: 61  GIGP--------GDRVL-VQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQS 111

Query: 137 RPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIA 196
                I  +  +  + A   R +L                             E+  D+A
Sbjct: 112 EAKAYIIADRFSGFDYAALARELL-----------------------------EELPDVA 142

Query: 197 IVLYTSGSTGIPKGVRLPHE--VILNRLAWQWATFPYSPSERV-GAFKTALTFVDAVSEI 253
           +   + G+TG+PK +   H   +   R + +       P          A  F      +
Sbjct: 143 LFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGL--DPGTVYLAVLPAAHNFT-----L 195

Query: 254 WGPLL--SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLR 299
             P L  +   GG +++    +  PD     +E+ KV    LVP+LL 
Sbjct: 196 SSPGLLGALLAGGTVVLHHPPS--PDVAFPLIEREKVTHTALVPALLN 241

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 27/180 (15%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY EL      LA GLL      ++     D   I A +           LA+   GA  
Sbjct: 47  TYRELYERVRALASGLL------SLGIPAGDRVAIFAAN---RPEWAIADLAILALGAVS 97

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +P+  T+  +++ +ILNE+   ++  EN++  + +         +  L ++   +     
Sbjct: 98  VPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE 157

Query: 178 PGESMLH------------------SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
               +L                         + +D+A ++YTSG+TG PKGV L H  +L
Sbjct: 158 AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLL 217

Length = 613

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 32/284 (11%)

Query: 30  EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
           EK A L PD  A+I EE++         TY +L+   +++A  L++ L+ K        G
Sbjct: 9   EKRAYLHPDRIAIITEEEEM--------TYKQLHEYVSKVAAYLIYELNVKK-------G 53

Query: 90  DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC 149
           + I  +S   S   I +L A+ K     +PL++   E  +   L ++   ++  E     
Sbjct: 54  ERIAILS-QNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQN 112

Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIA--IVLYTSGSTGI 207
             L+ +  + +    + + S          E      +N  + N+ A  I+ YTSG+TG 
Sbjct: 113 MALSMQKVSYVQ-RVISITS--------LKEIEDRKIDNFVEKNESASFIICYTSGTTGK 163

Query: 208 PKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI 267
           PKG  L  E +             +           L  +  +     P L A  GGV+I
Sbjct: 164 PKGAVLTQENMFWNALNNTFAIDLT-MHDRSIVLLPLFHIGGIGLFAFPTLFA--GGVII 220

Query: 268 IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN 311
           +PR     P + +  +EK+KV  ++ VP++ ++++   K   TN
Sbjct: 221 VPRKF--EPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN 262

Length = 496

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 33  AALSPDN--TALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
           AA  PD   T L  ++ +++TL     TY+EL+  +  +A  L               GD
Sbjct: 3   AAAQPDARYTFLFDDDDEEETL-----TYAELDRRARAIAARLQALGAP---------GD 48

Query: 91  HIVAVSLAPSSGLIQVLLAVWKAGA----AYLPLDVTAPEQRVKHILNEARPLLVIAENE 146
             V +   P    +        AGA    A  P  +     R+  IL +A    V+  + 
Sbjct: 49  R-VLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSA 107

Query: 147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTG 206
                         +   L L++A         +      +     +DIA + YTSGSTG
Sbjct: 108 VL--AALRAALAAPAALLLLLIAADDLAALAAADWRPPPPD----PDDIAFLQYTSGSTG 161

Query: 207 IPKGVRLPHEVILNRLA 223
            PKGV + H  +L  L 
Sbjct: 162 APKGVMVTHGNLLANLR 178

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 70/294 (23%), Positives = 103/294 (35%), Gaps = 54/294 (18%)

Query: 19  IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
           I K+  L       A+   D  ALI      D       TY+EL     +LA GL     
Sbjct: 1   IPKDLSLDSASLLFASEFGDRPALI------DAATGRALTYAELERLVRRLAAGLAARG- 53

Query: 79  TKAVPNENQDGDHIVAVSLAPSSGLIQVL-LAVWKAGAAYLPLDVTAPEQRVKHILNEAR 137
                   + GD  V + L+P+S    V+ LAV  AGA     +       +   + ++ 
Sbjct: 54  -------GRKGD--VVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSG 104

Query: 138 PLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSN---- 193
             L I  +E               L  L L    L  ++    S    D           
Sbjct: 105 AKLAITTSE-----------LAEKLASLALEPVVL-LDSADDGSAAIDDLLFADEPEPPV 152

Query: 194 ------DIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGAFKTALTF 246
                 D+A + Y+SG+TG  KGV L H  +I N         P    E V      L  
Sbjct: 153 VVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLC--VLPM 210

Query: 247 VDAVSEIWGPLLSARC-----GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
                 I+G  +           V+++PR    + ++ +  +EKYKV  L +VP
Sbjct: 211 ----FHIYGLTVILLALLRLGATVVVMPR---FDLEKFLAAIEKYKVTHLPVVP 257

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 88/260 (33%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           T+ +L  ASN+LA  L        V    + GD  V V L  S       LAV+K GA  
Sbjct: 8   TFGQLKDASNRLANALREL----GV----ERGDR-VGVYLPQSPETAIAHLAVYKLGAVS 58

Query: 118 LPLDV----TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS 173
           +PL V     A E R++   + AR L+                                 
Sbjct: 59  VPLSVLFGPDAVEHRLRD--SGARVLVT-------------------------------- 84

Query: 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN-----RLAWQWAT 228
                           + S+D AI++YTSG+TG PKG    H V+L       L ++ A 
Sbjct: 85  ----------------DGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAP 128

Query: 229 FP----YSPSE--RVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR-NPDQLIG 281
            P    ++P++   +G              +   LL A   GV ++   + R +P++   
Sbjct: 129 RPGDVFWTPADWAWIGG-------------LLDVLLPALYFGVPVVAYRMQRFDPERAFA 175

Query: 282 TLEKYKVERLVLVPSLLRSM 301
            + +Y V    L P+ L+ M
Sbjct: 176 LMRRYGVTNAFLPPTALKMM 195

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 41/208 (19%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           LH + E  AA  PD TAL+  ++   TL     TY+ L+     LA GL   L       
Sbjct: 2   LHHLLEDAAARLPDATALVHHDR---TL-----TYAALSERVLALASGL-RGLGLA--RG 50

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
           E       VA+ L      +  +     AG  ++P++     ++V HIL +    L++  
Sbjct: 51  ER------VAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVT- 103

Query: 145 NEQACENLAYKGRTVLSLPQLRLL-------SASLSHNNIPGESMLHSDN---------- 187
              + E L      +     LR L        AS  H   PGE                 
Sbjct: 104 ---SSERLDLLHPALPGCHDLRTLIIVGDPAHASEGH---PGEEPASWPKLLALGDADPP 157

Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
           +    +D+A +LYTSGSTG PKGV L H
Sbjct: 158 HPVIDSDMAAILYTSGSTGRPKGVVLSH 185

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 59.9 bits (146), Expect = 5e-10
 Identities = 67/297 (22%), Positives = 110/297 (37%), Gaps = 68/297 (22%)

Query: 33  AALSPDNTALIFEE-QDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
           A   PD  A+     +  D  +  +E +++EL++ S+ +A GL      +        G 
Sbjct: 16  AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGR--------GM 67

Query: 91  HIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE 150
             V + + PS     +  A++KAGA  + +D     + +K  L EA+P   I        
Sbjct: 68  RAV-LMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP----- 121

Query: 151 NLAYKGRTVLSLPQLRLLSA-SLSHNNIPG----ESMLHSDNNNE------QSNDIAIVL 199
             A+  R +    +  +    ++    + G     ++L               +D+A +L
Sbjct: 122 -KAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAIL 180

Query: 200 YTSGSTGIPKGVRLPH-------EVILNRLAWQ-----WATFPYSPSERVGAFKTALTFV 247
           +TSGSTG PKGV   H       E +      +       TFP               F 
Sbjct: 181 FTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFP--------------LFA 226

Query: 248 DAVSEIWGPLLSARCGGVLIIPR-DVTR----NPDQLIGTLEKYKVERLVLVPSLLR 299
                    L     G   +IP  D TR    +P +L   +E+Y V  L   P+LL 
Sbjct: 227 ---------LFGPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLE 274

Length = 552

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 67/252 (26%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           +Y+EL   S ++A  LL  L  K        GD  VA  L  +  L+  +LA W+ GA Y
Sbjct: 2   SYAELREQSARVA-NLLADLGVKP-------GDR-VAGLLPRTPELVVAILATWRVGAIY 52

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +PL      + +++ L  +   +V+                                   
Sbjct: 53  VPLFTAFGPKAIEYRLGHSGAKVVVT---------------------------------- 78

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
                 ++ N  +  +D+   +YTSG+TG+PKGV +P   +    A+          +  
Sbjct: 79  ------NAANRGKLDDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVF 132

Query: 238 GAFKTA-------LTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVER 290
             +  A       L +      I GPL      G+  +  +     +     LE+  V  
Sbjct: 133 --WNIADPGWAYGLYYA-----ITGPLAM----GITTVFLEGGFTAENTYDVLERLGVTN 181

Query: 291 LVLVPSLLRSML 302
               P+  R ++
Sbjct: 182 FAGSPTAYRMLM 193

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 66/201 (32%)

Query: 108 LAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL 167
           LA+  AGA  +P+  T+  + V +ILN++   +V  E+                      
Sbjct: 48  LAILAAGAVPVPIYPTSSPEEVAYILNDSGARVVFVED---------------------- 85

Query: 168 LSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL-NRLAWQW 226
                                  + +D+A ++YTSG+TG PKGV L H  +L    A   
Sbjct: 86  -----------------------KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALL- 121

Query: 227 ATFPYSPSERVGAFKTALTFV------DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLI 280
              P SP +RV      L+F+      +     + PL     G  +         P+ L+
Sbjct: 122 EVIPLSPGDRV------LSFLPLAHVFEQRLGEYLPL---SSGARVNFAES----PETLL 168

Query: 281 GTLEKYKVERLVLVPSLLRSM 301
             L + +      VP +   +
Sbjct: 169 EDLREVRPTVFFAVPRVWEKI 189

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 38/295 (12%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVP 83
           +H IF  NA   PD T ++      D    T   TY ++N ASN LA    H+L    + 
Sbjct: 238 IHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILA----HYL----LK 289

Query: 84  NENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP--LLV 141
              + GD +V +       L+  ++ V KAGA +  +D   P  R    L+ A+P  L+V
Sbjct: 290 TGIKRGD-VVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIV 348

Query: 142 IA---ENEQACENLAYKGRTVLSL-PQLRLLS-ASLSHNNIPGES--MLHSDNNNEQSND 194
           I      +Q   +   K   + +  P L L    SL   ++ G    +L      + +  
Sbjct: 349 IEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLAPYQALKDTPT 408

Query: 195 IAIV--------LYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF 246
             +V         +TSGS GIPKGV   H  +     W    F  S +++     T L+ 
Sbjct: 409 GVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKF----TMLSG 464

Query: 247 V--DAVS-EIWGPLLSARCGGVLIIP-RDVTRNPDQLIGTLEKYKVERLVLVPSL 297
           +  D +  +++ PL     G  L++P  D    P +L   + KY      L P++
Sbjct: 465 IAHDPIQRDMFTPLF---LGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAM 516

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 56.7 bits (138), Expect = 3e-09
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 26/119 (21%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253
           D A++LYTSG+TG PKGV L H  +L       A    SP +        L         
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDV------YLLA------- 48

Query: 254 WGPLLSA----------RCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
             PL  A            GG +++       P+ ++  +E+++V    LVP++ + +L
Sbjct: 49  -APLYHAAGGLFLLPALAAGGTVVLMPKFD--PEAVLDLIERHRVTHTFLVPTMFQRLL 104

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 31/164 (18%)

Query: 57  ETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAA 116
            +Y E+   +  +  GL                   + +        I    A +     
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKP---------GDKIGIFAENRPEWIITEQACFSQSLV 56

Query: 117 YLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN 176
            +PL  T  E+ +++ILNE    +V       C+ +      V S  +L  L        
Sbjct: 57  IVPLYDTLGEEAIEYILNETEISIVF------CDAV-----KVYSFEELEELGKKNKVPP 105

Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN 220
            P +             D+A ++YTSG+TG PKGV L H  I+ 
Sbjct: 106 TPPKP-----------EDLATIMYTSGTTGNPKGVMLTHGNIVA 138

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 34/204 (16%)

Query: 28  IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
           I  ++A   PD TAL+F +         + TY+EL++A N++A  LL            +
Sbjct: 16  ILRRSARRYPDKTALVFGD--------RSWTYAELDAAVNRVAAALLD--------LGLK 59

Query: 88  DGDHIVAVSLAPSSGLIQVL-LAVWKAGAAYLPLDVTAPEQRVKHILN--EARPLLV--- 141
            GD + A  L  +S    +L LA  +AGA ++P++     + + +IL+   AR  LV   
Sbjct: 60  KGDRVAA--LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA 117

Query: 142 IAENEQACENLAYKGRTVLSL-PQLRLLSASLSHNNIPGESMLHSDNNNE-----QSNDI 195
           +A   +A   L      +LSL    R          +       + +  E       +D+
Sbjct: 118 LAPTAEAALALLPVDTLILSLVLGGREAPGGW----LDFADWAEAGSVAEPDVELADDDL 173

Query: 196 AIVLYTSGSTGIPKGVRLPHEVIL 219
           A +LYTSG+  +PKG  L H  ++
Sbjct: 174 AQILYTSGTESLPKGAMLTHRALI 197

Length = 523

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 22/184 (11%)

Query: 36  SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAV 95
             D  AL +   D  +L     TY EL    N+    L        +  EN+     V +
Sbjct: 18  RGDKIALYY---DDGSL-----TYGELQEEVNRWGNAL----RELGIERENR-----VLL 60

Query: 96  SLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK 155
            L  +           K GA  +P++        ++ LN++R  +++   E+  E L   
Sbjct: 61  ILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVIS-EELWEVLKPA 119

Query: 156 GRTVLSLPQLRLL----SASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
            +    L  + ++      +LS+  +   +    +     ++D+A  LY+SGSTG PKGV
Sbjct: 120 LQKDPHLRHVIVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGV 179

Query: 212 RLPH 215
              H
Sbjct: 180 VHLH 183

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 31/181 (17%)

Query: 31  KNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
           + A L+PD TA+ FEE+          T+ EL+ A   +A  L      K          
Sbjct: 10  QRAFLTPDRTAIEFEEKK--------VTFMELHEAVVSVAGKLAALGVKK---------G 52

Query: 91  HIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE 150
             VA+ +     +I V+ A+ + GA  + L+     + +   L++A    +I +++   +
Sbjct: 53  DRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAK 112

Query: 151 NLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKG 210
            +         L       A +       +     D       ++A ++YTSG+TG PKG
Sbjct: 113 LIPGISVKFAELMNGPKEEAEI-------QEEFDLD-------EVATIMYTSGTTGKPKG 158

Query: 211 V 211
           V
Sbjct: 159 V 159

Length = 483

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 54/253 (21%), Positives = 91/253 (35%), Gaps = 78/253 (30%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           T+ EL+  S+++ARGL      K            V + + P + L  +  A++K GA  
Sbjct: 4   TFRELDERSDRIARGLRASGIRKG---------DRVVLMVPPGADLTALTFALFKVGAVP 54

Query: 118 LPLDVTAPEQRVKHILN---EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSH 174
           + +D   P    KH+     EA P   I                                
Sbjct: 55  VLID---PGMGRKHLGRCLEEAEPDAFIGIP----------------------------- 82

Query: 175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPS 234
                           +++D A +L+TSGSTG PKGV   H     ++    + +     
Sbjct: 83  ----------------KADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREG 126

Query: 235 ER-VGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPR-DVTR----NPDQLIGTLEKYKV 288
           +R + AF            ++GP L    G   +IP  D T     +P +L   + +   
Sbjct: 127 DRDLAAF--------PPFALFGPAL----GVTTVIPAMDPTAPAALDPAKLAQAIREIGA 174

Query: 289 ERLVLVPSLLRSM 301
             +   P+LL+++
Sbjct: 175 SCVFGSPALLKNV 187

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 34/212 (16%)

Query: 22  EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
           +  L   +++ A   PD  A++            + TYS L+ A+++LA  LL     K 
Sbjct: 22  DASLADYWQQTARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLL----AKG 70

Query: 82  VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
           +    + GD  VA  L        + LA  K GA  +PL  +  E  +  +LN+ +  + 
Sbjct: 71  I----EPGD-RVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMF 125

Query: 142 IA---ENEQACENLAYKGRTVLSLPQLRLL-----------SASLSHNNIPGESMLHSDN 187
            A     +    +L    +    LPQL+ +           S SLS      E +  +  
Sbjct: 126 FAPTLFKQTRPVDLILPLQN--QLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAIT 183

Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
            +   +++A VL+TSG+ G+PKGV L H  IL
Sbjct: 184 TH--GDELAAVLFTSGTEGLPKGVMLTHNNIL 213

Length = 547

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 41/179 (22%), Positives = 61/179 (34%), Gaps = 59/179 (32%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY+EL    N+LA GL        V    + GD  VA+ L      ++   A+ K GA  
Sbjct: 5   TYAELAERVNRLAAGL----LALGV----RPGDR-VALMLDNCPEFLRAWFALNKLGAVA 55

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +P++     + + HIL+ +   L++                                   
Sbjct: 56  VPINTALRGEELAHILDHSGARLIVV---------------------------------- 81

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER 236
                           D A +LYTSG+TG PKGV L H  +L             P + 
Sbjct: 82  ----------------DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV 124

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 45/162 (27%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY EL+ A+++LA  L        V      GD +VA  L      + V LA  + GA  
Sbjct: 3   TYGELDDAADRLAAALAE----LGVRP----GD-VVAFQLPNWWEFVVVYLACARIGAVI 53

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
            P+     E+ +  IL +AR  ++   +E       ++G    ++P              
Sbjct: 54  NPIVPIYRERELGFILRQARARVLFVPDE-------FRGFDYAAMP-------------- 92

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
                          +D+A++LYTSG+TG PKGV   H  +L
Sbjct: 93  ---------------DDVALLLYTSGTTGEPKGVMHTHNTLL 119

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 54/158 (34%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY+EL    ++LA      L  K V    + GD  VA+ +  S   +    A+ +AGA  
Sbjct: 3   TYAELLELVDRLAG----LLQEKGV----RKGDR-VALYMQNSPQFVIAYYAILRAGAVV 53

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +P++    E  ++HILN++   ++I                                   
Sbjct: 54  VPVNPMNREAELEHILNDSGARVLIV---------------------------------- 79

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
                        + +D+A++ YTSG+TG+PKG    H
Sbjct: 80  -----------GSELDDVAVIPYTSGTTGLPKGCMHTH 106

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 42/188 (22%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY +L++AS +LA    + L    V      GD  VAV +  S   + + LA  +AGA +
Sbjct: 30  TYGDLDAASARLA----NLLVALGVK----PGDR-VAVQVEKSPEALALYLATLRAGAVF 80

Query: 118 LPLDV--TAPEQRVKHILNEARPLLVIA--ENEQACENLAYK--GRTVL--------SLP 163
           LPL+   T  E  + + + +A P LV+    N      +A       V         SL 
Sbjct: 81  LPLNTAYTLAE--LDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLL 138

Query: 164 QLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL-NRL 222
           +    +A      +P             ++D+A +LYTSG+TG  KG  L H  +L N L
Sbjct: 139 E-AAAAAPDDFETVP-----------RGADDLAAILYTSGTTGRSKGAMLSHGNLLSNAL 186

Query: 223 A----WQW 226
                W++
Sbjct: 187 TLVDYWRF 194

Length = 504

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 69/250 (27%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY EL+  +N+ A  L               GD  V + L  S  L+   LA  KAGA  
Sbjct: 12  TYRELHDLANRFANVLRALG--------VSPGDR-VLLLLPDSPELVAAFLACLKAGAVA 62

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           + L+     Q ++HIL+++   L++ E +                               
Sbjct: 63  VALNPLLTPQDLEHILDDSGAALLVTEAD------------------------------- 91

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH---EVILNRLAWQWATFPYSPS 234
                           DIA  LYTSG+TG PKGV   H   + +    A+        P 
Sbjct: 92  ----------------DIAYWLYTSGTTGKPKGV--MHRHRDPLTFAEAFARELLGLQPG 133

Query: 235 ERV-GAFKTALTFVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLV 292
           +R+  + K    +    S +  PL     G   +++P   T  P+ ++  L +++   L 
Sbjct: 134 DRIFSSSKLFFAYGLGNS-LLFPL---FSGASAVLLPGWPT--PEAVLDLLARHRPTVLF 187

Query: 293 LVPSLLRSML 302
            VP+L R++L
Sbjct: 188 GVPALYRALL 197

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 73/298 (24%), Positives = 112/298 (37%), Gaps = 62/298 (20%)

Query: 27  RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN 86
            +    A  +PD  ALI E     TL     TY+EL+  SN LARGLL       V    
Sbjct: 53  GLVAHAARRAPDRAALIDER---GTL-----TYAELDEQSNALARGLL----ALGV---- 96

Query: 87  QDGDHIVAVSLAPSS-GLIQVLLAVWKAGAAYLPLDV-TAPEQRVKHILNEARPLLVIAE 144
           + GD  VAV LA +  G +  L A  K GA  + L+   +  Q  +    E    LV  +
Sbjct: 97  RAGD-GVAV-LARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDD 154

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDI--------- 195
                E           L +LR    +   +   G +    D+    S+           
Sbjct: 155 -----EFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPKPG 209

Query: 196 AIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF-VDAVSEIW 254
            IV+ TSG+TG PKG   P               P   +  +    + + F     + + 
Sbjct: 210 GIVILTSGTTGTPKGAPRPE--------------PSPLAP-LAGLLSRVPFRAGETTLLP 254

Query: 255 GPL----------LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            P+          L+   G  +++ R    +P+  +  + K+K   LV+VP +L  +L
Sbjct: 255 APMFHATGWAHLTLAMALGSTVVLRRRF--DPEATLEDIAKHKATALVVVPVMLSRIL 310

Length = 549

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 55/222 (24%), Positives = 85/222 (38%), Gaps = 47/222 (21%)

Query: 29  FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
           F+   A  PD  AL+   Q          T+ +L  A ++LARGLL              
Sbjct: 24  FDATVARFPDREALVVRHQAL------RYTWRQLADAVDRLARGLLALGVQP-------- 69

Query: 89  GDHI-VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVI-AENE 146
           GD + +         L Q   A  + GA  + ++       +++ L ++    VI A+  
Sbjct: 70  GDRVGIWAPNCAEWLLTQ--FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAF 127

Query: 147 QACE----------NLAYKGRTVLS---LPQLRLLSASLSHNNIPG-----------ESM 182
           +  +           LA      L+   LP+LR +  SL+    PG           E++
Sbjct: 128 KTSDYHAMLQELLPGLAEGQPGALACERLPELRGV-VSLAPAPPPGFLAWHELQARGETV 186

Query: 183 LHSDNNNEQS----NDIAIVLYTSGSTGIPKGVRLPHEVILN 220
                   Q+    +D   + YTSG+TG PKG  L H  ILN
Sbjct: 187 SREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILN 228

Length = 558

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 19/118 (16%)

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHE-------VILNRLAWQWATFPYSPSERVGAFKTAL 244
            +D+A ++YTSGSTG PKGV L H         I   L         +  +R+ A     
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-------LTEDDRILAV-LPF 52

Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           +F   +S++   L + R GG L++       P  ++  L K ++     VP+    +L
Sbjct: 53  SFDYGLSQL---LTAFRVGGTLVLESRFAF-PRDVLKHLAKERITGFAGVPTTWAQLL 106

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 157 RTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
           RT   L  LR+L+     +  P ++ LH      + +D A++L TSGSTG+PK V L H 
Sbjct: 136 RTRAGLEALRVLAIEELRSAPP-DAPLH----PARPDDPALLLLTSGSTGVPKCVVLTHR 190

Query: 217 VILNRLA 223
            IL R A
Sbjct: 191 NILARSA 197

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 50/266 (18%)

Query: 58  TYSELNSASNQLARGL----LHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKA 113
           TY EL + SN+LA GL    L            ++GD  VA+ L  +    +V  A  ++
Sbjct: 13  TYGELEARSNRLAHGLRALGL------------REGDV-VAILLENNPEFFEVYWAARRS 59

Query: 114 GAAYLPLD--VTAPEQRVKHILN--EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLS 169
           G  Y P++  +TA E  + +I++   A+ L+V A        LA        +P L +++
Sbjct: 60  GLYYTPINWHLTAAE--IAYIVDDSGAKVLIVSAALADTAAELA--AELPAGVPLLLVVA 115

Query: 170 ASLSHNNIPGESMLHSDNNNEQSNDIAIV------LYTSGSTGIPKGVR--LPH---EVI 218
                  +PG          +    IA        LY+SG+TG PKG++  LP    +  
Sbjct: 116 GP-----VPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEA 170

Query: 219 LNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLII-PR-DVTRNP 276
              +        Y   + V     A  +  A    +G + +   GG +++  + D     
Sbjct: 171 PGMMLALLGFGMYGGPDSV-YLSPAPLYHTAPLR-FG-MSALALGGTVVVMEKFD----A 223

Query: 277 DQLIGTLEKYKVERLVLVPSLLRSML 302
           ++ +  +E+Y+V    LVP++   ML
Sbjct: 224 EEALALIERYRVTHSQLVPTMFVRML 249

Length = 502

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 25/201 (12%)

Query: 22  EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
           E+ L  +  + A   PD   L+F          T  TY+E   A+   A    H L    
Sbjct: 20  ERTLPAMLARQAERYPDRPLLVFGG--------TRWTYAEAARAAAAAA----HALAAAG 67

Query: 82  VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
           V    + GD  VA+        + V L     GA  +P++      +++HIL  +   L+
Sbjct: 68  V----KRGDR-VALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLL 122

Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLH-------SDNNNEQSND 194
           + E       L       L LP + LL A  S +   G S          +     Q  D
Sbjct: 123 VVEAALL-AALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGD 181

Query: 195 IAIVLYTSGSTGIPKGVRLPH 215
            A +LYTSG+TG  KGV  PH
Sbjct: 182 TAAILYTSGTTGPSKGVCCPH 202

Length = 542

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 32/274 (11%)

Query: 30  EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
            ++A + PD  AL F             T+ EL+     LA  L      + V      G
Sbjct: 24  ARHALMQPDAPALRFLGNTT--------TWRELDDRVAALAGAL----SRRGV----GFG 67

Query: 90  DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLD--VTAPEQRVKHILNEARPLLVIAENEQ 147
           D ++ + L  +   ++ +LA    GA  +P++  +T PE  +  ++++    +V+ E   
Sbjct: 68  DRVLILMLNRTE-FVESVLAANMLGAIAVPVNFRLTPPE--IAFLVSDCGAHVVVTEA-- 122

Query: 148 ACENLAYKGRTVLSLPQLRLLSASLSHNNIPG-ESMLHSDNNNEQSNDI-----AIVLYT 201
           A   +A   R ++ L    +++   S +++ G E +L          DI     A+++YT
Sbjct: 123 ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYT 182

Query: 202 SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR 261
           SG+TG PKG  L H  +  +      T     +  VG     L  +  +  +   LL   
Sbjct: 183 SGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLL--- 239

Query: 262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
            G   +I      +P QL+  LE  KV  + LVP
Sbjct: 240 LGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVP 273

Length = 542

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 46/262 (17%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           +Y +L    + LA   L  L  K +           A++L  S   +   LA  +AG   
Sbjct: 4   SYQQLWQEVDLLAE-QLRALGVKRI-----------ALALDNSIDWVIADLACLQAGIVC 51

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +P+      Q+ +H+LN+A   L+I+++  A                    SA  +    
Sbjct: 52  IPIPHFFSAQQTQHLLNDAGADLLISDDPDA-------------------ASALHTPFAT 92

Query: 178 PGE----SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP 233
            GE    ++  S N  E     A + YTSGSTG PKGV L    +               
Sbjct: 93  LGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILE 152

Query: 234 SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR--------NPDQLIGTLEK 285
            ER        T ++ ++ ++ PLL    G  +I+              +P Q +  L +
Sbjct: 153 PERHLCLLPLATLLENIAGVYAPLLM---GATVILVPLAELGLSGSSGLDPAQFVAALSR 209

Query: 286 YKVERLVLVPSLLRSMLMFLKM 307
           ++   L+LVP LL +++  ++ 
Sbjct: 210 WQPHSLILVPQLLMALVAAVEQ 231

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 33/245 (13%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           T+ +L+  +  LA+ L      KA    +      VA+    S  ++ +L A    GA  
Sbjct: 1   TWQDLDCEAAHLAKAL------KAQGIRSGS---RVALVGQNSIEMVLLLHACLLLGAEI 51

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
             L+    E    + L +    L++ +       L  K     SL ++            
Sbjct: 52  AMLNTRLTENERTNQLEDLDVQLLLTD-----SLLEEKDFQADSLDRIEAAGRY------ 100

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
             E+ L +  N +Q   IA +++TSG+TG PK V                   ++  +  
Sbjct: 101 --ETSLSASFNMDQ---IATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDN- 154

Query: 238 GAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSL 297
                 L  +  +S ++  L+    G  L I         QL+  +   +V  + LVP+ 
Sbjct: 155 WLLSLPLYHISGLSILFRWLIE---GATLRIVDKFN----QLLEMIANERVTHISLVPTQ 207

Query: 298 LRSML 302
           L  +L
Sbjct: 208 LNRLL 212

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 17/115 (14%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV--- 250
           D A++ YTSG+TG PKG  L H  +LN   +  A        R          +  V   
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNN-GYSIA--------RRLGLTEGDRTLVPVPLF 53

Query: 251 --SEIWGPLLSAR-CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
               +   +L++   G  L++      +P   +  +E+ ++  L  VP++  ++L
Sbjct: 54  HVFGLVLGVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALL 106

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 25/189 (13%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           AA +PD  AL F   D    V+   +Y +L+      AR +   L  +A       GD  
Sbjct: 19  AAQTPDRLALRFLADDPGEGVVL--SYRDLD----LRARTIAAALQARASF-----GDR- 66

Query: 93  VAVSLAPS-----SGLIQVLLAVWKAGAAYLPLDVTAPEQ-RVKHILNEARPLLVIAENE 146
            AV L PS     +     L A   A  AY P       Q R+  I+ +A P L++   +
Sbjct: 67  -AVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVAD 125

Query: 147 QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTG 206
                L  +     + P+L      L  + +             Q +DIA + YTSGST 
Sbjct: 126 LRDSLLQMEELAAANAPEL------LCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTA 179

Query: 207 IPKGVRLPH 215
           +PKGV++ H
Sbjct: 180 LPKGVQVSH 188

Length = 4334

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 39/174 (22%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           + S+L  A+  +A  +               G   VAV   P+   +  ++    AG   
Sbjct: 27  SRSDLAGAATAVAERV--------------AGARRVAVLATPTLATVLAVVGALIAGVPV 72

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +P+   +     +HIL ++     +         L         +P +RL + S      
Sbjct: 73  VPVPPDSGVAERRHILADSGAQAWLGPAPDDPAGLP-------HVP-VRLHARSWHRYPE 124

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVI---LNRL--AWQW 226
           P                 A+++YTSG+TG PKGV L    I   L+ L  AWQW
Sbjct: 125 PDPD------------APALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQW 166

Length = 471

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 63/237 (26%)

Query: 22  EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
           E+ + ++ ++ AA  PD  AL++ +Q          TY E N   + LA+G    L    
Sbjct: 15  EQTIGQLLDRTAARYPDREALVYRDQGL------RWTYREFNEEVDALAKG----LLALG 64

Query: 82  VPNENQDGDHI----------VAVSLAPSS-GLIQVLL-----------AVWKAGAAYLP 119
           +    + GD +          V    A +  G I V +           A+ ++G   L 
Sbjct: 65  I----EKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKAL- 119

Query: 120 LDVTAPEQRVKH---ILNEARPLLVIAENEQ-ACENLAY----------KGRTVLSLPQL 165
             + A   +      +L E  P L   E  Q     L            K   +L+  +L
Sbjct: 120 --IAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDEL 177

Query: 166 RLLSASLSHNNIPG-ESMLHSDNN-NEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN 220
             L  ++    +   ++ L  D+  N Q        YTSG+TG PKG  L H  ILN
Sbjct: 178 LALGRAVDDAELAARQATLDPDDPINIQ--------YTSGTTGFPKGATLTHRNILN 226

Length = 559

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLA 223
             D +    NDIA+++YTSGSTG+PKGV + H  I+  +A
Sbjct: 241 PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280

Length = 696

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 59/158 (37%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           +Y+E N+ +N+ A    H L    V      GD  VA+ +      +   LA+ K GA  
Sbjct: 5   SYAEFNAWANRYA----HALRALGVK----KGDV-VALLMENRPEYLLAWLALAKLGAVA 55

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
             ++ T   + + H +N +    VI                                   
Sbjct: 56  ALINTTQRGEVLAHCINVSDARAVIV---------------------------------- 81

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
                           D A  +YTSG+TG+PK   + H
Sbjct: 82  ----------------DPAFYIYTSGTTGLPKAAIMSH 103

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 30/210 (14%)

Query: 19  IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
           I   + L ++++  A +    TALIFE            +Y ELN   N+ A  L + L 
Sbjct: 3   IVGGQHLRQMWDDLADVYGHKTALIFESSGGVV---RRYSYLELNEEINRTA-NLFYSLG 58

Query: 79  TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP 138
            +        GD  VA+ L      I     + K GA  +P++     +    IL  ++ 
Sbjct: 59  IRK-------GDK-VALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQA 110

Query: 139 LLVIAENE--QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQ----- 191
            L++   +       +  +  T   L  + L   +L      G     +    +Q     
Sbjct: 111 SLLVTSAQFYPMYRQIQQEDAT--PLRHICLTRVALP--ADDG-VSSFTQLKAQQPATLC 165

Query: 192 ------SNDIAIVLYTSGSTGIPKGVRLPH 215
                 ++D A +L+TSG+T  PKGV + H
Sbjct: 166 YAPPLSTDDTAEILFTSGTTSRPKGVVITH 195

Length = 517

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 56/224 (25%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L    E +A   PD TA++F        +    +Y EL   + +LA G L       V  
Sbjct: 12  LFHNLEVSARRYPDKTAIVF----YGRAI----SYRELLEEAERLA-GYLQ--QECGV-- 58

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
             + GD  V + +  S   +    A+ +A A  +P++    E+ + H + ++   + I  
Sbjct: 59  --RKGDR-VLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVG 115

Query: 145 NEQACENLAYKGRTVL----------------------------SLPQLR-----LLSAS 171
           +E A +     G   L                             L  L          +
Sbjct: 116 SELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEA 175

Query: 172 LSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
           L+    P       D       D+A++ YTSG+TG+PKG    H
Sbjct: 176 LAAGLAPPPHTAGPD-------DLAVLPYTSGTTGVPKGCMHTH 212

Length = 546

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 46/279 (16%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           A  +PD  AL++ +Q+         +Y+E +    Q A G+LH             GD +
Sbjct: 12  ARRTPDRAALVYRDQEI--------SYAEFHQRILQAA-GMLHARGIGQ-------GD-V 54

Query: 93  VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENL 152
           VA+ +  S+  +++  A    GA +LP++       V +IL +A   L++ + E     +
Sbjct: 55  VALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDA-IV 113

Query: 153 AYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVR 212
           A +   ++     +  S  L+   +                D+  ++YTSG+T  PKGV 
Sbjct: 114 ALETPKIVIDAAAQADSRRLAQGGLEIPPQAAV-----APTDLVRLMYTSGTTDRPKGVM 168

Query: 213 LPHEVILNRLAWQWATFPYSPSER---------VGAFKTALTFVDAVSEIWGPLLSARCG 263
             +  +  +          + SER         VGAF      +  ++ +W        G
Sbjct: 169 HSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFD-----LPGIAVLW-------VG 216

Query: 264 GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           G L I R+   +P+ ++  +E++++    + P +L  +L
Sbjct: 217 GTLRIHREF--DPEAVLAAIERHRLTCAWMAPVMLSRVL 253

Length = 497

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 188 NNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
            N   +D A++L+TSGS G PKGV L H  +L   A   A   +SP ++V
Sbjct: 788 CNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKV 837

Length = 1140

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 40/277 (14%)

Query: 29  FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
           ++K+A+L P+  A+   ++     V+T + + E              +L+ K   N+   
Sbjct: 7   YKKHASLQPNKIAIKENDR-----VLTYKDWFESVCKVAN-------WLNEKESKNKT-- 52

Query: 89  GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA 148
               +A+ L      +Q+      AG   +PLD+   +  +K  L  +   +++ E  + 
Sbjct: 53  ----IAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKL 108

Query: 149 CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIP 208
            +    +GR +      R++   L               N +  N    + +TSGSTG P
Sbjct: 109 NDLPDEEGRVIEIDEWKRMIEKYL--------PTYAPIENVQ--NAPFYMGFTSGSTGKP 158

Query: 209 KGVRLPHEVILNRLAWQWATFPYSPSERV---GAFKTALTFVDAVSEIWGPLLSARCGGV 265
           K      +  L+        F     + V   G    +L    A+S ++        G  
Sbjct: 159 KAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLY-------VGQT 211

Query: 266 LIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           + + R     P+Q++  LE   +  +  VP++L S+ 
Sbjct: 212 VHLMR--KFIPNQVLDKLETENISVMYTVPTMLESLY 246

Length = 487

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 46/194 (23%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAG--A 115
           TY+E++  SNQ+AR LL     K        GD  VA+ L      + + L + K G   
Sbjct: 5   TYAEVDKRSNQVARALLAHAGLKP-------GD-TVALLLGNEPAFLWIWLGLAKLGCPT 56

Query: 116 AYLPLDVTAPEQRVKHILN-----EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSA 170
           A+L  ++     R   +L+      AR L+   E  +A E +         LP LR +  
Sbjct: 57  AFLNTNI-----RSGSLLHCFRCCGARVLVADPELLEAVEEI---------LPALRAMGV 102

Query: 171 S---LSHNNIP--------------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRL 213
               LSH + P               E +  S  +       A+ +YTSG+TG+PK  R+
Sbjct: 103 RVFYLSHTSPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARI 162

Query: 214 PHEVILNRLAWQWA 227
            H  +L        
Sbjct: 163 SHLRVLQCSGMLSL 176

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 28/181 (15%)

Query: 76  FLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNE 135
              ++ +    ++G++I  + L  S       LA+  AG   + L+ TA E+ ++    +
Sbjct: 18  LALSRLIKKLTKEGENI-GIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQ 76

Query: 136 A--------RPLLVIAENEQACENLAYKGRTVLSLPQLR-----------LLSASLSHNN 176
           A        R  L   + E     +  +G  ++ L  LR            L+A L    
Sbjct: 77  AGIKTVITSRAFLEKLKLEGL--VVLLEGVRIVYLEDLRAKISKADKLKAFLAAKLP--- 131

Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER 236
               ++L       + +D A++L+TSGS G+PKGV L H  +L  +    A    +  + 
Sbjct: 132 ---PALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDV 188

Query: 237 V 237
           +
Sbjct: 189 L 189

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 71/306 (23%), Positives = 102/306 (33%), Gaps = 94/306 (30%)

Query: 38  DNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL 97
           D  AL + +  +        TY EL   SN+ A    + L    V    + GD +     
Sbjct: 59  DKVALRYLDASRKEKY----TYKELKELSNKFA----NVLKELGV----EKGDRVF--IF 104

Query: 98  APSSGLIQV-LLAVWKAGAAYLPL----------D----------VTAPEQRVKHILNEA 136
            P    +   LL   K GA   PL          D          +T P    +   ++ 
Sbjct: 105 MPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDL 164

Query: 137 ---RPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSN 193
              + +L++ E+ +            L    L +  AS          +  +D       
Sbjct: 165 PSLKHVLLVGEDVEEGPG-------TLDFNAL-MEQAS------DEFDIEWTD-----RE 205

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF------- 246
           D AI+ YTSGSTG PKGV   H  +L      + T            K  L         
Sbjct: 206 DGAILHYTSGSTGKPKGVLHVHNAMLQ----HYQT-----------GKYVLDLHEDDVYW 250

Query: 247 -------VDAVSE-IWGPLLSARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPSL 297
                  V   S  I+ P L    G   +I  D  R +P++    LE YKV      P+ 
Sbjct: 251 CTADPGWVTGTSYGIFAPWL---NGATNVI--DGGRFSPERWYRILEDYKVTVWYTAPTA 305

Query: 298 LRSMLM 303
           +R MLM
Sbjct: 306 IR-MLM 310

Length = 570

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 33/200 (16%)

Query: 29  FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
            E+ A + PD TA++      D       TY E      +LA  L        +      
Sbjct: 10  LERAAKVYPDRTAVV----YGDRRY----TYRETYDRCRRLASALS----KLGI----GK 53

Query: 89  GDHIVAVSLAP-SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQ 147
           GD  VAV LAP +  +++    V  AGA  +PL+       +  ILN +   ++  +  Q
Sbjct: 54  GDV-VAV-LAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVD--Q 109

Query: 148 ACENLAYKGRTVLSLPQLRLLSASLSHNN------IPGESMLHSDNNNE-----QSNDIA 196
              +LA +   +LS  ++      +             E +L   + +            
Sbjct: 110 EFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDP 169

Query: 197 IVL-YTSGSTGIPKGVRLPH 215
           I L YTSG+TG PKGV   H
Sbjct: 170 ISLNYTSGTTGNPKGVVYTH 189

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 54/202 (26%), Positives = 78/202 (38%), Gaps = 38/202 (18%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVPNENQDGDH 91
           A+L PD+ A  F + ++D   +    T+S+L   +  +A  L               GD 
Sbjct: 11  ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH---------GSTGDR 61

Query: 92  IVAVSLAPSSGL--IQVLLAVWKAGAAYLPLDVTAP---EQRVKHILNEARPLLVIAENE 146
             AV LAP  GL  I   L   +AG   +PL V      ++RV  +L +  P +V+  + 
Sbjct: 62  --AVILAPQ-GLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSA 118

Query: 147 QACENLAYKGR-------TVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
              +   Y           V+ +  L L S               SD         A + 
Sbjct: 119 VVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPR------------GSDARPRDLPSTAYLQ 166

Query: 200 YTSGSTGIPKGVRLPHE-VILN 220
           YTSGST  P GV + H  VI N
Sbjct: 167 YTSGSTRTPAGVMVSHRNVIAN 188

Length = 578

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 72/311 (23%), Positives = 117/311 (37%), Gaps = 96/311 (30%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           A  +PD  A+I     +   V+T   Y EL+  SN+LA    H   +  +    + GDH 
Sbjct: 7   AQTTPDKPAVIMASTGE---VVT---YRELDERSNRLA----HLFRSLGL----KRGDH- 51

Query: 93  VAVSLAPSSGLIQVLLAVWKAGAAYLPLD--VTAPEQRVKHILN--EARPLL-------V 141
           VA+ +  +   ++V  A  ++G  Y  ++  +T  E    +I++   AR L+       V
Sbjct: 52  VAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAE--AAYIVDDSGARALITSAAKLDV 109

Query: 142 IAENEQACENLAYKGRTVLSLP-------QLRLLSASLSHNNIPGESMLHSDNNNEQSND 194
                + C  +  + R VL                A L    I  ES L +D        
Sbjct: 110 ARALLKQCPGV--RHRLVLDGDGELEGFVGYAEAVAGLPATPIADES-LGTD-------- 158

Query: 195 IAIVLYTSGSTGIPKGVR--LPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE 252
              +LY+SG+TG PKG++  LP +                         T L     +  
Sbjct: 159 ---MLYSSGTTGRPKGIKRPLPEQPP----------------------DTPLPLTAFLQR 193

Query: 253 IWG-----------PLLSA----------RCGGVLIIPRDVTRNPDQLIGTLEKYKVERL 291
           +WG           PL  +          R GG +I+      + +Q +  +E+Y V   
Sbjct: 194 LWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME--HFDAEQYLALIEEYGVTHT 251

Query: 292 VLVPSLLRSML 302
            LVP++   ML
Sbjct: 252 QLVPTMFSRML 262

Length = 511

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 198 VLYTSGSTGIPKGVRLPHEVILNRLAWQ--WATFPYSPSERVGAFKTALTFVDAVSEIWG 255
           +LYT G+TG+PKGV    E I   L     +AT   +  E                    
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGA--GTRFLPAC 65

Query: 256 PL---------LSARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLV 294
           PL         LSA   G  ++     + +PD++  T+EK++V  LV+V
Sbjct: 66  PLMHGAGQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIV 114

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 51/268 (19%), Positives = 80/268 (29%), Gaps = 105/268 (39%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           T++EL   S++ A     FL    V      GD  VAV L     L  V+L   K GA +
Sbjct: 2   TFAELKEESDRAAN----FLKDLGV----GRGDR-VAVLLPRVPELWAVILGCIKLGAVF 52

Query: 118 LP----LDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS 173
           +P    L       R++     AR ++  A+                             
Sbjct: 53  IPGTTQLGPKDIRYRLER--AGARAIVTSAD----------------------------- 81

Query: 174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH------------------ 215
                               D A++ +TSG+TG+PK V   H                  
Sbjct: 82  --------------------DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRP 121

Query: 216 -EVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR 274
            ++        WA   +S                    ++ P L      V    R    
Sbjct: 122 DDLHWTIADPGWAKGAWSS-------------------LFAPWLLGAAVFVYHGRR---F 159

Query: 275 NPDQLIGTLEKYKVERLVLVPSLLRSML 302
           + ++ +  LE+Y V      P+  R +L
Sbjct: 160 DAERTLELLERYGVTTFCAPPTAYRMLL 187

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 60/248 (24%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           TY +L   +N++A  L+  L           G+ ++  S A +  L+   LAV KAGA  
Sbjct: 62  TYQDLLDRANRIAHVLVEDLGVVP-------GNRVLLRS-ANTPMLVACWLAVLKAGAIV 113

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           +    T P  R K             E     +    K R   +L   RL +        
Sbjct: 114 V---TTMPLLRAK-------------ELTTIVD----KARITHALCDKRLTA-------- 145

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER- 236
                         ++D+A++ +TSG+TG+PKG    H  IL  +   +      P+   
Sbjct: 146 --------------ADDVALIGFTSGTTGLPKGTMHFHRDILA-ICDAFPRHVLQPTPDD 190

Query: 237 --VGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLV 294
             +G+   A TF      ++ P L      VL+        P  L+  +++++   L   
Sbjct: 191 VFIGSPPLAFTFGLGGLVLF-P-LRFGASAVLL----EQATPPLLLKAIQEHRATILFTA 244

Query: 295 PSLLRSML 302
           P+  R+ML
Sbjct: 245 PTAYRAML 252

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 48/209 (22%), Positives = 73/209 (34%), Gaps = 54/209 (25%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           A   P   A+IF             TY+EL+  S++ A  LL      A       GD  
Sbjct: 43  ARERPQRPAIIFYGHVI--------TYAELDELSDRFA-ALLRQRGVGA-------GDR- 85

Query: 93  VAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN------E 146
           VAV L        V   + K GA ++P+     E  + + LN+A   +++A +      E
Sbjct: 86  VAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVE 145

Query: 147 QACENLAYKGRTVLS--------------LPQLRLLSASLSH----------NNIPGESM 182
           Q     +   R V+               LP   L +  L+                   
Sbjct: 146 QVRAETSL--RHVIVTSLADVLPAEPTLPLPDS-LRAPRLAAAGAIDLLPALRACTAPVP 202

Query: 183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
           L         + +A + YT G+TG+PKG 
Sbjct: 203 LPP----PALDALAALNYTGGTTGMPKGC 227

Length = 567

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 35/191 (18%)

Query: 37  PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS 96
             +TALI      D+    + +YSEL      +A GL H +  +        GD +V + 
Sbjct: 53  NGDTALI------DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQ-------GD-VVLLL 98

Query: 97  LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG 156
           L  S     + LAV   G     ++ ++    +K  + +    L     E   + L+  G
Sbjct: 99  LPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEK-LSPLG 157

Query: 157 RTVLSLPQLRLLSASLSHNNIPGE-----SMLHSDNN-------NEQSNDIAIVLYTSGS 204
             V+ +P+      +   ++   E      ++  D +        +   D+A ++Y+SG+
Sbjct: 158 VPVIGVPE------NYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQD--DVAAIMYSSGT 209

Query: 205 TGIPKGVRLPH 215
           TG  KGV L H
Sbjct: 210 TGASKGVVLTH 220

Length = 560

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 36/156 (23%), Positives = 52/156 (33%), Gaps = 61/156 (39%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           T+ EL+   +QLA  L        V      GD  VA+    S   + + LA+ + GA  
Sbjct: 3   TFQELDQRVSQLAEQL----AALGVRR----GD-RVALLAKNSIEFLLLFLALLRLGAVV 53

Query: 118 LPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI 177
           LPL+   P++                E +Q   +L          P L            
Sbjct: 54  LPLNPRLPQE----------------ELQQQLADLQ---------PDLD----------- 77

Query: 178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRL 213
                             A +++TSGSTG PK V  
Sbjct: 78  ----------------RPATIIFTSGSTGKPKAVVH 97

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 189 NEQSNDIAIVLYTSGSTGIPKGVRLPHEVIL 219
               +DIA + ++SGSTG PKGV L H+ +L
Sbjct: 102 LSLPDDIAFIQFSSGSTGEPKGVILTHKNLL 132

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVIL-NRL---AWQWATFPYSPSERVGAFKTALTFVD 248
           +D+A + YT G+TG+ KG  L H  I+ N L   AW    F   P      F  AL    
Sbjct: 204 DDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYH 263

Query: 249 AVSEIWGPLLSARCGGVLII---PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
             +     LL  R GG  I+   PRD+       I  L+KY+V     V +L  ++L
Sbjct: 264 IFALTVCGLLGMRTGGRNILIPNPRDIP----GFIKELKKYQVHIFPAVNTLYNALL 316

Length = 557

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 25/118 (21%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI 253
           DIA + YT G+TG PKGV   H  I      Q A + +    R        T        
Sbjct: 169 DIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRF----LMCT-------- 216

Query: 254 WGPLLSARCGGVLIIPR-------DVTR--NPDQLIGTLEKYKVERLVLVPSLLRSML 302
             PL  A  GG   +P         V    +P +++  +E+ ++    LVP+++ ++L
Sbjct: 217 --PLSHA--GGAFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALL 270

Length = 524

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 61/291 (20%), Positives = 107/291 (36%), Gaps = 57/291 (19%)

Query: 29  FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQD 88
           F   A   PD   LI    +  TL     T+ EL+  S+ LA  L      +A+P     
Sbjct: 49  FAIAAQRCPDRPGLI---DELGTL-----TWRELDERSDALAAAL------QALPIGEPR 94

Query: 89  GDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENE-- 146
              +V +      G ++ LLA  + GA  L L+ +     +  ++       VI + E  
Sbjct: 95  ---VVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS 151

Query: 147 ----QACENLAYKGRTV-LSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
               +A  +     R V  +     L    L   +  G+    +           ++L T
Sbjct: 152 ATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA-GQRPEPTGRKGR------VILLT 204

Query: 202 SGSTGIPKGVR-------LPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW 254
           SG+TG PKG R          + IL+R  W+        +E       A  F       W
Sbjct: 205 SGTTGTPKGARRSGPGGIGTLKAILDRTPWR--------AEEP-TVIVAPMF-----HAW 250

Query: 255 G---PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           G    +L+A     ++  R    +P+  +  +++++   L +VP +   ++
Sbjct: 251 GFSQLVLAASLACTIVTRRRF--DPEATLDLIDRHRATGLAVVPVMFDRIM 299

Length = 537

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER 236
           D+A + YTSG+TG PKGV L H  ++  +A    +  + PS+ 
Sbjct: 222 DVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDV 264

Length = 651

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVIL 219
           D A ++++SGS G PKGV L H  IL
Sbjct: 783 DTATIIFSSGSEGEPKGVMLSHHNIL 808

Length = 1146

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 36/184 (19%)

Query: 33  AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHI 92
           A L P   A +      D  +    TY+EL++   +LA      L  +       DG+ +
Sbjct: 5   ARLQPQRLAAV------DLALGRRWTYAELDALVGRLAA----VLRRRGC----VDGERL 50

Query: 93  VAVSLAPSSGLIQVL-LAVWKAGAAYLPLD--VTAPEQRVKHILNEARPLLVIAENEQAC 149
               LA +S  +  L  A  + GA Y+PL+  ++A E     +L +A P L++ +     
Sbjct: 51  A--VLARNSVWLVALHFACARVGAIYVPLNWRLSASELDA--LLQDAEPRLLLGD----- 101

Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPK 209
           + +A     V  L     ++++ +       S+            ++++L+TSG++G PK
Sbjct: 102 DAVAAGRTDVEDLA--AFIASADALEPADTPSI--------PPERVSLILFTSGTSGQPK 151

Query: 210 GVRL 213
           GV L
Sbjct: 152 GVML 155

Length = 488

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERV 237
            +D A++L+TSG+TG PKGV L H+ +L   A   A +   +PS+R 
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLL-ASARNIAKSHKLTPSDRC 46

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 185 SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
           S+ N  +  DI  ++YTSG++G PKGV L HE
Sbjct: 212 SETNPPKPLDICTIMYTSGTSGDPKGVVLTHE 243

Length = 660

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 53  VITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWK 112
                T++++   + ++A  L               GD I  +S    +  I   LA+W 
Sbjct: 3   QWHEYTWAQVADQARRIAAALQSLGLEP--------GDRIAILS-KNCAEWIIADLAIWM 53

Query: 113 AGAAYLPLDVTAPEQRVKHILN--EARPLLVIA-ENEQACENLAYKGRTVLSLPQLRLLS 169
           AG   +PL  T   + ++++L   +A+ L V   ++  A +    +G   + L     L 
Sbjct: 54  AGHVSVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLK 113

Query: 170 ASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHE 216
                +++   +         +  D+A ++YTSG+TG PKGV L   
Sbjct: 114 DHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFG 160

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 25/134 (18%)

Query: 93  VAVSLAPSSGLIQVLL-AVWKAGAAYLPLDVTAP--------EQRVKHI-LNEARPLLVI 142
           VAV LA +   I      +W  GA+   L    P        E  ++ I +  A+ ++V 
Sbjct: 57  VAV-LAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVG 115

Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTS 202
                A   L  KG  VL++  L    A+      P + +   ++      D+A++  TS
Sbjct: 116 EPFLAAAPVLEEKGIRVLTVADLL---AAD-----PIDPVETGED------DLALMQLTS 161

Query: 203 GSTGIPKGVRLPHE 216
           GSTG PK V++ H 
Sbjct: 162 GSTGSPKAVQITHG 175

Length = 545

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 14/22 (63%), Positives = 19/22 (86%)

Query: 194 DIAIVLYTSGSTGIPKGVRLPH 215
           D+A++LYTSG+TG PKG +L H
Sbjct: 220 DVALILYTSGTTGKPKGAQLTH 241

Length = 573

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 39/125 (31%)

Query: 198 VLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV----DAVSEI 253
           ++YTSG+TG PKGVR                   +P +   A +             + +
Sbjct: 157 MIYTSGTTGHPKGVR---------------RAAPTPEQAAAAEQMRALIYGLKPGIRALL 201

Query: 254 WGPL----------LSARCGGVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            GPL           + R GGVL++ PR    +P++L+  +E++++  + +VP+      
Sbjct: 202 TGPLYHSAPNAYGLRAGRLGGVLVLQPR---FDPEELLQLIERHRITHMHMVPT------ 252

Query: 303 MFLKM 307
           MF+++
Sbjct: 253 MFIRL 257

Length = 509

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 22/197 (11%)

Query: 28  IFEKNAALSPDNTALIFEEQDKDTLVITNETYSEL-NSASNQLARGLLHFLHTKAVPNEN 86
           + E  A   P+  AL+      D + I+    + L +  + QL R  L       +P + 
Sbjct: 21  LVEVAATRLPEAPALVVTA---DRIAISYRDLARLVDDLAGQLTRSGL-------LPGD- 69

Query: 87  QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAP--EQRVKHILNEARPLLVIAE 144
                 VA+ +  ++  +  LLA  +A    +PLD   P  EQRV+     AR +L+ A+
Sbjct: 70  -----RVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDAD 124

Query: 145 --NEQACENLAYKGRTVLSLPQLRLLSASLS-HNNIPGESMLHSDNNNEQSNDIAIVLYT 201
             +++A     +   TV           +LS H +   E    +        D A++++T
Sbjct: 125 GPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFT 184

Query: 202 SGSTGIPKGVRLPHEVI 218
            G+TG+PK V   H  I
Sbjct: 185 GGTTGLPKMVPWTHANI 201

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVI 218
            +IP +  L +   +++ N    ++YTSG+TG+PKGV L H+ I
Sbjct: 133 RSIP-DEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 64/253 (25%), Positives = 91/253 (35%), Gaps = 67/253 (26%)

Query: 58  TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAY 117
           +Y EL   S + A  L      K        G+  V   L  S  L    L   K GA Y
Sbjct: 2   SYQELKELSARFANVLASLGVGK--------GER-VFTLLPRSPELYVAALGTLKLGAVY 52

Query: 118 LPL-DVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN 176
            PL     PE           P+    E  +A        + +++ P+L        +  
Sbjct: 53  GPLFSAFGPE-----------PIRDRLELGEA--------KVLITTPEL--------YER 85

Query: 177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYS---- 232
              E             D A++ +TSG+TG PKGV   H  +       +AT  Y     
Sbjct: 86  TDPE-------------DPALLHFTSGTTGKPKGVLHVHRAV----VAHYATARYVLDLR 128

Query: 233 PSERVGAFKTA-LTFVDAVS-EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVER 290
           P +    + TA   +V   S  I  PLL    G  L++      + ++  G LE+ KV  
Sbjct: 129 PDDVY--WCTADPGWVTGTSYGIIAPLL---NGVTLVVDEG-EFDAERWYGILEEEKVTV 182

Query: 291 LVLVPSLLRSMLM 303
               P+ LR MLM
Sbjct: 183 WYTAPTALR-MLM 194

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 128 RVKHILNEARPLLVIAENEQACEN----LAYKGRTVLSL----PQLRLLSASLSHNNIPG 179
           +++HI +   P  V AE+  A       L   G  V+++        +  A+L       
Sbjct: 93  KLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFAALLATPPTA 152

Query: 180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGV 211
                        + +A  L+TSGSTG+PK V
Sbjct: 153 AVDAAFAAVGP--DTVAKYLFTSGSTGLPKAV 182

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 33/128 (25%)

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEV---ILNRLAWQWATFPYSPSER------VGAFKT 242
           S D   +LYTSGSTG PKGV   H     +L         F     +       VG + T
Sbjct: 235 SEDPLFILYTSGSTGKPKGVL--HTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG-WIT 291

Query: 243 ALTFVDAVSEIWGPLLSARCG-------GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
             +++     ++GPL     G       G    P     +P +    +EK+KV      P
Sbjct: 292 GHSYI-----VYGPLA---NGATTVMFEGTPTYP-----DPGRFWEIIEKHKVTIFYTAP 338

Query: 296 SLLRSMLM 303
           + +R  LM
Sbjct: 339 TAIR-ALM 345

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 35/258 (13%)

Query: 69  LARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQR 128
           LA GLL            ++GD +VA++   S   ++ LLAV  AG    PL+     + 
Sbjct: 45  LAAGLLRL--------GLRNGD-VVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEE 95

Query: 129 VKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL------LSASLSH--NNIPGE 180
            K  +   RP++++   ++ C +  Y+      LP L         S+S+    N+    
Sbjct: 96  AKSAMLLVRPVMLVT--DETCSSW-YEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTT 152

Query: 181 SMLHSDNNNEQS-------NDIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYS 232
            ML                +D  ++ +TSG+TG PKGV + H  +I+  LA + A   Y 
Sbjct: 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA-KIAIVGYG 211

Query: 233 PSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLV 292
             + V      L  +  +S     L+   C   +++P+   +   Q I   +++ V  ++
Sbjct: 212 -EDDVYLHTAPLCHIGGLSSALAMLMVGACH--VLLPKFDAKAALQAI---KQHNVTSMI 265

Query: 293 LVPSLLRSMLMFLKMTGT 310
            VP+++  ++   + + T
Sbjct: 266 TVPAMMADLISLTRKSMT 283

Length = 563

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 23/123 (18%)

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRL--AWQWATF-PYSPSERVGA----FKTAL 244
            +D+A   +T G+TG PK  R  H    N +  AW  A      P + +      F    
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSH---RNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG 57

Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDV-TRNPDQLIGTL----EKYKVERLVLVPSLLR 299
             V  ++    PL     G  +++P     RNP  ++       E+Y+V  L  VP++L 
Sbjct: 58  AIVTGLA----PLAR---GATVVLPTPSGFRNP-AVVANFWKIVERYRVTLLSAVPTVLA 109

Query: 300 SML 302
           ++L
Sbjct: 110 ALL 112

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 35/209 (16%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L RI E  + +  D T   +   +++       T++ + + +  LA    H LH +    
Sbjct: 12  LTRILEYGSTVHGDTTVTTWGGAEQEQT-----TFAAIGARAAALA----HALHDEL--- 59

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
               GD  V   +   +  ++VL AV   GA + PL+      ++ HI+N A   +++A+
Sbjct: 60  -GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVAD 118

Query: 145 NEQACENLAYKGRTVLSLPQLRLL------SASLSHNNIPG-------ESML-----HSD 186
              A E L   G  +   P +R +       A  +  ++P        E++L       D
Sbjct: 119 PRLA-EQL---GEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYD 174

Query: 187 NNNEQSNDIAIVLYTSGSTGIPKGVRLPH 215
                    A + Y++G+TG PKGV   H
Sbjct: 175 WPELDETTAAAICYSTGTTGAPKGVVYSH 203

Length = 576

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 47/209 (22%), Positives = 76/209 (36%), Gaps = 33/209 (15%)

Query: 15  ALEKIYKE------KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQ 68
            L + Y+E      K L  I    AA  PD  A+I   +          +Y EL+  ++ 
Sbjct: 9   ELAERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNR--------QWSYRELDQRADN 60

Query: 69  LARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQR 128
           LA GL     TK      + GD  V V L   +    V  A+ K G A  P+      ++
Sbjct: 61  LAAGL-----TKL---GIKQGDTAV-VQLPNIAEFYIVFFALLKLGVA--PVLALFSHRK 109

Query: 129 --VKHILNEARPLLVIAENEQAC-ENLAYKGRTVLSLPQLR---LLSASLSHNNIPGESM 182
             +    ++  P L I +   +  +   +  +    LP LR   +   +           
Sbjct: 110 SELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAELFLWLES 169

Query: 183 LHSDNN--NEQSNDIAIVLYTSGSTGIPK 209
                     +S+++A    + GSTG PK
Sbjct: 170 PAEPVKFPPTKSDEVAFFQLSGGSTGTPK 198

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 35/128 (27%)

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPH-EVILNRLAWQWATFPYSPSERVGAFK--TALTFVD 248
             D+A + YT G+TG+ KG  L H  ++ N    + A   Y P    G     TAL    
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAA---YGPLLHPGKELVVTAL---- 257

Query: 249 AVSEIWGPL-----LSARC------GG--VLII-PRDVTRNPDQLIGTLEKYKVERLVLV 294
                  PL     L+  C      GG  +LI  PRD+       +  L+KY    +  V
Sbjct: 258 -------PLYHIFALTVNCLLFIELGGQNLLITNPRDI----PGFVKELKKYPFTAITGV 306

Query: 295 PSLLRSML 302
            +L  ++L
Sbjct: 307 NTLFNALL 314

Length = 560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
KOG1177|consensus	596		100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
KOG1256|consensus	691		100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
KOG1176|consensus	537		100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK09274	552	peptide synthase; Provisional	100.0
KOG1179|consensus	649		100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.98
PLN02574	560	4-coumarate--CoA ligase-like	99.98
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.98
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK07867	529	acyl-CoA synthetase; Validated	99.98
PRK12316	5163	peptide synthase; Provisional	99.98
PRK12583	558	acyl-CoA synthetase; Provisional	99.98
PRK06164	540	acyl-CoA synthetase; Validated	99.98
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.98
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.97
PLN02330	546	4-coumarate--CoA ligase-like 1	99.97
PRK06145	497	acyl-CoA synthetase; Validated	99.97
PLN02479	567	acetate-CoA ligase	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
PRK08315	559	AMP-binding domain protein; Validated	99.97
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08316	523	acyl-CoA synthetase; Validated	99.97
PRK06178	567	acyl-CoA synthetase; Validated	99.97
PRK06188	524	acyl-CoA synthetase; Validated	99.97
PRK05691	4334	peptide synthase; Validated	99.97
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.97
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.97
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.97
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.97
PRK07470	528	acyl-CoA synthetase; Validated	99.97
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.97
PRK07514	504	malonyl-CoA synthase; Validated	99.97
PRK08162	545	acyl-CoA synthetase; Validated	99.97
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.97
PRK05850	578	acyl-CoA synthetase; Validated	99.97
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.97
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.97
PRK13383	516	acyl-CoA synthetase; Provisional	99.97
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK09088	488	acyl-CoA synthetase; Validated	99.97
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07868	994	acyl-CoA synthetase; Validated	99.97
PRK07798	533	acyl-CoA synthetase; Validated	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.97
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.96
PRK08308	414	acyl-CoA synthetase; Validated	99.96
PRK13390	501	acyl-CoA synthetase; Provisional	99.96
PRK09192	579	acyl-CoA synthetase; Validated	99.96
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.96
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.96
PRK07787	471	acyl-CoA synthetase; Validated	99.96
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.96
PRK13391	511	acyl-CoA synthetase; Provisional	99.95
KOG1175|consensus	626		99.95
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.94
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.94
KOG1180|consensus	678		99.94
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.94
PLN03051	499	acyl-activating enzyme; Provisional	99.93
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.92
KOG3628|consensus	1363		99.65
KOG1178|consensus	1032		99.5
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.48
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.34
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.28
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.08
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.17
KOG3628|consensus	1363		97.9
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	96.84
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	94.97
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.66

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.5e-37  Score=292.12  Aligned_cols=269  Identities=25%  Similarity=0.336  Sum_probs=196.0

Q ss_pred             hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308          18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL   97 (311)
Q Consensus        18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~   97 (311)
                      ......++..++.+.++.+|+.+|+.+...    +.|..+||+|+.+++.++|++|++.        |+..||+ |+|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~l--------g~~~gdr-vai~a   77 (613)
T COG1022          11 DVAEIHTLPKRLAERVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSL--------GIPAGDR-VAIFA   77 (613)
T ss_pred             hhhhcccHHHHHHHHhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhc--------CCCCCCE-EEEEe
Confidence            344456889999999999999888886653    3356889999999999999999864        5544786 99999


Q ss_pred             CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccc---cccchh----hhhhh-
Q psy8308          98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRT---VLSLPQ----LRLLS-  169 (311)
Q Consensus        98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~---~~~~~~----~~~~~-  169 (311)
                      .|+++|+++.+|++.+|++.||+++++++++++|++++++++++|+++.............   +..+..    ..... 
T Consensus        78 ~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (613)
T COG1022          78 ANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE  157 (613)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccc
Confidence            9999999999999999999999999999999999999999999999876544333221110   100000    00000 


Q ss_pred             -cccCCCCCCCCccc---------CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC-CCCCCccc
Q psy8308         170 -ASLSHNNIPGESML---------HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP-YSPSERVG  238 (311)
Q Consensus       170 -~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~  238 (311)
                       ..............         ........++|+|+|+|||||||.|||||+||+|+..++........ .+++++..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~L  237 (613)
T COG1022         158 AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVL  237 (613)
T ss_pred             hhhccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEE
Confidence             00000000000000         00112346899999999999999999999999999999988888776 77888754


Q ss_pred             eeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         239 AFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +   -+|+.|.+..++...+.+..|.+....    .++..+++.++++|+|+++.||.+|.++-+...
T Consensus       238 s---fLPlaHi~Er~~~~~~~~~~g~~~~~~----~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~  298 (613)
T COG1022         238 S---FLPLAHIFERAFEGGLALYGGVTVLFK----EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIM  298 (613)
T ss_pred             E---eCcHHHHHHHHHHHHHHhhcceEEEec----CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHH
Confidence            4   477777777766433333333344332    379999999999999999999999998876543

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.9e-37  Score=286.37  Aligned_cols=262  Identities=22%  Similarity=0.270  Sum_probs=182.2

Q ss_pred             HHHHHHh-hCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHH
Q psy8308          28 IFEKNAA-LSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQV  106 (311)
Q Consensus        28 ~~~~~a~-~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~  106 (311)
                      .++++.. ..+|++|+++.++...+   +.+||+||.++|+|+|++|++.       .|+ +||| |+|++||.+|.+++
T Consensus        14 ~~dr~~~~~~~~~~aii~~~e~~~~---~~~Ty~~L~~~v~r~A~~L~~~-------~gv-kGDr-V~iymp~~pe~~~a   81 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDGEDGLF---RELTYGDLRREVARLANALKDL-------GGV-KGDR-VAIYMPNSPEAVIA   81 (528)
T ss_pred             hhhhhhhccCCCceEEEEEcCCCCc---eEEEHHHHHHHHHHHHHHHHHh-------CCC-CCCE-EEEEcCCCHHHHHH
Confidence            5666665 34689999998654322   4789999999999999999753       245 8996 89999999999999


Q ss_pred             HHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhh---hh-hhc-ccCCCCCCCCc
Q psy8308         107 LLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQL---RL-LSA-SLSHNNIPGES  181 (311)
Q Consensus       107 ~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~  181 (311)
                      ||||+|+|||.+|+++.+++++++++++++++|++|+.+..........-+  ...+..   .. ... ...+.+.....
T Consensus        82 ~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~--~~~~~~~~~~iv~~r~~~~~~~~~~~~  159 (528)
T COG0365          82 LLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALL--EDADAVLSSVVVVPRLGLWYDEAVEKA  159 (528)
T ss_pred             HHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccch--hHHHHhhcceEEeccccccHHHHhhcc
Confidence            999999999999999999999999999999999999876543211100000  000000   00 000 00000000000


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh-hcCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA  260 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
                      ....+....+.+|+++|+|||||||.||||+|+|+.++........ .+.+.++|++.....+.++.+....+++++.. 
T Consensus       160 ~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~-  238 (528)
T COG0365         160 SEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLAS-  238 (528)
T ss_pred             CCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhc-
Confidence            0111222357899999999999999999999999988876544443 44566667654433333433333334555554 


Q ss_pred             cCCcEEEeCCCCCC-ChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         261 RCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       261 ~~g~~~v~~~~~~~-~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                        |.+.++.+...+ +|.++++.|++|+||++++.||.+++|++..+
T Consensus       239 --Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~  283 (528)
T COG0365         239 --GATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL  283 (528)
T ss_pred             --CCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC
Confidence              667766554433 59999999999999999999999999998865

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4e-37  Score=299.90  Aligned_cols=267  Identities=19%  Similarity=0.190  Sum_probs=184.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEeccc-CccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQ-DKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~-~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      .++.++|+++++++||++|+.+.+. ......++.+||+||+++++++|++|++.        |+++||+ |+|+++|++
T Consensus        45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~--------Gv~~Gd~-Vai~~~n~~  115 (666)
T PLN02614         45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSV--------GVKDEAK-CGIYGANSP  115 (666)
T ss_pred             CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCH
Confidence            4899999999999999999985321 00011234579999999999999999853        7788896 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc----------
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS----------  171 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  171 (311)
                      ||+++++||+++|+++||+|+.++++++.+++++++++++|++.+...............+..+......          
T Consensus       116 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~  195 (666)
T PLN02614        116 EWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAET  195 (666)
T ss_pred             HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhh
Confidence            9999999999999999999999999999999999999999997643221111000000000000000000          


Q ss_pred             -----cCCCCCCC-CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc-----CCCCCCcccee
Q psy8308         172 -----LSHNNIPG-ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF-----PYSPSERVGAF  240 (311)
Q Consensus       172 -----~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~~~~  240 (311)
                           ........ ............++|+++|+|||||||.||||++||+|+...+......+     .+.+.++.   
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~---  272 (666)
T PLN02614        196 FGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVY---  272 (666)
T ss_pred             cCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEE---
Confidence                 00000000 00000011123578999999999999999999999999987665443322     34556654   


Q ss_pred             ecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         241 KTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +..+|+.|.+...+. ......|+++++.+   +++..+++.|+++|+|++++||+++.+|+++.
T Consensus       273 l~~lPl~H~~~~~~~-~~~l~~G~~v~~~~---~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  333 (666)
T PLN02614        273 LSYLPLAHIFDRVIE-ECFIQHGAAIGFWR---GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGL  333 (666)
T ss_pred             EEeccHHHHHHHHHH-HHHHHhCCEEEEeC---CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHH
Confidence            344555555443221 22234577777754   37999999999999999999999999998654

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.1e-36  Score=289.81  Aligned_cols=271  Identities=30%  Similarity=0.388  Sum_probs=200.8

Q ss_pred             hhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          20 YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      ....++.+.+.++++.+|+++|+.+.+...      ++||+||+++++++|++|++.        ++++||+ |+|+++|
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~--------~v~~gdr-Vail~~N   72 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQAL--------GVKPGDR-VAILLPN   72 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCC
Confidence            445689999999999999999999876431      379999999999999999864        5777897 9999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhc-cc----CC
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSA-SL----SH  174 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~  174 (311)
                      +++++++++||+++|++++|+||.++++|+.++++++++++++++.............. ........... ..    ..
T Consensus        73 ~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  151 (534)
T COG0318          73 SPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADDRLPITL  151 (534)
T ss_pred             CHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEecccccccccccH
Confidence            99999999999999999999999999999999999999999999765211111111000 00000000000 00    00


Q ss_pred             CCCCCCc-ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC--CCCCCccceeecchhhhhhHH
Q psy8308         175 NNIPGES-MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP--YSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  251 (311)
                      ....... .........+++|+++|+|||||||.||||++||+|++.+.......+.  +.+.++   ++..+|++|..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~---~l~~lPl~H~~G  228 (534)
T COG0318         152 EALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDV---VLSWLPLFHIFG  228 (534)
T ss_pred             HHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCce---EEEecChHHHHH
Confidence            0000000 0000011146899999999999999999999999999988776666666  666665   456677777777


Q ss_pred             HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       252 ~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      .....+.....|++++++....++++.++..+.++++|++..||+++.+|+.+.+...
T Consensus       229 l~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~  286 (534)
T COG0318         229 LIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD  286 (534)
T ss_pred             HHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc
Confidence            6655444455688888877545789999999999999999999999999999877554

>KOG1177|consensus

Probab=100.00  E-value=6.2e-37  Score=270.26  Aligned_cols=274  Identities=20%  Similarity=0.260  Sum_probs=208.6

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      ....+++++.++-.+++-||+.|+++...+.      ++||+|+.+.+.++|++|.+.        |.++||| |+|..|
T Consensus        46 pl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~------R~Tf~~~~~ev~slAaGll~l--------GL~kGDr-Vgvwgp  110 (596)
T KOG1177|consen   46 PLDSETIGQLLETTTERVPDKEAAVFDHEGI------RLTFSEFVSEVESLAAGLLSL--------GLKKGDR-VGVWGP  110 (596)
T ss_pred             CcccccHHHHHHHHhhccCcceEEEEeeccc------hhhHHHHHHHHHHHHhhHHhh--------cCCCCCE-EEEecC
Confidence            3446799999999999999999988876543      469999999999999999865        7788897 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh----h-------hhcc------ccccc
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN----L-------AYKG------RTVLS  161 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~----~-------~~~~------~~~~~  161 (311)
                      |+.+|+.+++||.++|.+.|++||.+..+|++|.|+..+.+++|+.......-    .       ...+      ..++.
T Consensus       111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~  190 (596)
T KOG1177|consen  111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE  190 (596)
T ss_pred             ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence            99999999999999999999999999999999999999999999976432210    0       0000      01111


Q ss_pred             chhhhhhhcccC-CCCCCCCc------cc-----CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc
Q psy8308         162 LPQLRLLSASLS-HNNIPGES------ML-----HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF  229 (311)
Q Consensus       162 ~~~~~~~~~~~~-~~~~~~~~------~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~  229 (311)
                      +...+..++... .......+      ..     ........|+|.+.|.|||||||.|||+.+||.|+.++........
T Consensus       191 lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~  270 (596)
T KOG1177|consen  191 LTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA  270 (596)
T ss_pred             ceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh
Confidence            111111110000 00000000      00     0001124579999999999999999999999999999887777777


Q ss_pred             CCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         230 PYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ++....+   +..+.|++|-+++..+.+.+++.|.++|+|.. .++|...+++|.++|+|.++.+|+|+.-|++.+...+
T Consensus       271 g~~e~~~---i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~-~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~  346 (596)
T KOG1177|consen  271 GYNEKHR---ICIPNPLYHCFGCVLGVMAALMHGATIVFPAP-SFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ  346 (596)
T ss_pred             CcCcceE---EEecCchHHHHHHHHHHHHHHHhCcEEEeeCC-CCChHHHHHHHHhhceEEEecChHHHHHHhcchhhcc
Confidence            7776544   45567888888877888888888999999753 4789999999999999999999999999999887765


Q ss_pred             CC
Q psy8308         310 TN  311 (311)
Q Consensus       310 ~~  311 (311)
                      .|
T Consensus       347 ~~  348 (596)
T KOG1177|consen  347 VD  348 (596)
T ss_pred             Cc
Confidence            43

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.8e-36  Score=293.98  Aligned_cols=266  Identities=18%  Similarity=0.206  Sum_probs=184.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEeccc-CccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQ-DKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~-~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      .++.++|.+.++++|+++|+..... ......|+.+||+||.++++++|++|.+.        |+++||+ |+|+++|++
T Consensus        43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~--------Gv~~gd~-Vai~~~n~~  113 (660)
T PLN02861         43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSR--------GVNPGDR-CGIYGSNCP  113 (660)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCH
Confidence            5889999999999999999975310 00112245689999999999999999753        7788896 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc----------
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS----------  171 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  171 (311)
                      ||+++++||+++|+++||++++++.+++.+++++++++++|+++................+..+......          
T Consensus       114 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~  193 (660)
T PLN02861        114 EWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEE  193 (660)
T ss_pred             HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhc
Confidence            9999999999999999999999999999999999999999997543221111000000000000000000          


Q ss_pred             -----cCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC-----CCCCCccceee
Q psy8308         172 -----LSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP-----YSPSERVGAFK  241 (311)
Q Consensus       172 -----~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-----~~~~~~~~~~~  241 (311)
                           ....................++|+++|+|||||||.||||++||+|+..........+.     +.++++   ++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~---~l  270 (660)
T PLN02861        194 LGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDS---YF  270 (660)
T ss_pred             CCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCE---EE
Confidence                 00000000000000112245789999999999999999999999999876554433322     244454   34


Q ss_pred             cchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         242 TALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      +.+|+.|.+...+ .+.....|+++++..   +++..+++.|+++++|+++.||++|.+|++.
T Consensus       271 ~~lPl~H~~~~~~-~~~~l~~G~~v~~~~---~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~  329 (660)
T PLN02861        271 SYLPLAHVYDQVI-ETYCISKGASIGFWQ---GDIRYLMEDVQALKPTIFCGVPRVYDRIYTG  329 (660)
T ss_pred             EECcHHHHHHHHH-HHHHHHhCCEEEEeC---CCHHHHHHHHHHhCCcEEeechHHHHHHHHH
Confidence            4566666655433 233455677877753   4789999999999999999999999998763

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-36  Score=292.57  Aligned_cols=269  Identities=17%  Similarity=0.194  Sum_probs=185.8

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC---------
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG---------   89 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~g---------   89 (311)
                      .+...++.+++.++++++|+++|+.+...+.   .|+.+||+|+.++++++|++|.+..     ..|+++|         
T Consensus        57 ~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~---~~~~~Ty~el~~~v~~~A~~L~~~~-----~~Gv~~g~~~~~~~~g  128 (746)
T PTZ00342         57 LYVYKHIMKLLLEKYKLNNNKIAIVEHSCGE---PQNYITYGNFFKKVLSFSHSLNTYE-----GKGIPEKKYNEEQNNG  128 (746)
T ss_pred             ccccchHHHHHHHHHhhcCCceeEeccCCCC---CceeeeHHHHHHHHHHHHHHHHHHh-----hcCCCcCccccccccc
Confidence            4456899999999999999999998642211   1346899999999999999998530     0255666         


Q ss_pred             --CcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhh
Q psy8308          90 --DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL  167 (311)
Q Consensus        90 --d~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  167 (311)
                        | +|+|+++|++||+++++||+++|++.||++++++++|+.|++++++++++|++.+.......... ..+.+..+..
T Consensus       129 ~~d-~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~-~~~~l~~ii~  206 (746)
T PTZ00342        129 KFK-LLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKN-ELPHLKKLII  206 (746)
T ss_pred             ccc-EEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhc-cCCCceEEEE
Confidence              5 49999999999999999999999999999999999999999999999999996543322111110 0110111110


Q ss_pred             hhcccCC-------------------C------------------------------------CC----C--CC------
Q psy8308         168 LSASLSH-------------------N------------------------------------NI----P--GE------  180 (311)
Q Consensus       168 ~~~~~~~-------------------~------------------------------------~~----~--~~------  180 (311)
                      +......                   .                                    ..    .  ..      
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  286 (746)
T PTZ00342        207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFD  286 (746)
T ss_pred             ECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHH
Confidence            0000000                   0                                    00    0  00      


Q ss_pred             -----cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc--CCCCCCccceeecchhhhhhHHHH
Q psy8308         181 -----SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF--PYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       181 -----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                           ..........+++|+++|+|||||||.|||||+||+|++.++.......  .....++   +++.+|+.|.+...
T Consensus       287 ~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~---~ls~LPL~Hi~~~~  363 (746)
T PTZ00342        287 DMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKT---HLSYLPISHIYERV  363 (746)
T ss_pred             HHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCe---EEEeCcHHHHHHHH
Confidence                 0000011234578999999999999999999999999987765433221  1122344   34446666655543


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      + .+.....|+++++..   .++..+++.|+++|+|+++.||++|.+|.+.
T Consensus       364 ~-~~~~l~~G~~i~~~~---~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~  410 (746)
T PTZ00342        364 I-AYLSFMLGGTINIWS---KDINYFSKDIYNSKGNILAGVPKVFNRIYTN  410 (746)
T ss_pred             H-HHHHHHcCCEEEEeC---CCHHHHHHHHHHhCCcEEEchHHHHHHHHHH
Confidence            3 233445688887754   2689999999999999999999999999874

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.8e-35  Score=288.21  Aligned_cols=267  Identities=19%  Similarity=0.185  Sum_probs=188.8

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecc-cCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEE-QDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~-~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      ..++.++++++++++|+++|+.+.. .+.....++.+||+||.++++++|++|++.        |+++||+ |+|+++|+
T Consensus        43 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~--------Gv~~gd~-Vai~~~n~  113 (651)
T PLN02736         43 IGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQH--------GIPKGAC-VGLYFINR  113 (651)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCCC
Confidence            3589999999999999999985421 111111245689999999999999999864        7788886 89999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc---------
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS---------  171 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  171 (311)
                      +||+++++||+++|+++||+|+.++++++.+++++++++++|++.+......... .....+..+......         
T Consensus       114 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~  192 (651)
T PLN02736        114 PEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCL-SEIPSVRLIVVVGGADEPLPSLPS  192 (651)
T ss_pred             HHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHh-hcCCCceEEEEECCCchhhhhhhc
Confidence            9999999999999999999999999999999999999999999754322111100 000000000000000         


Q ss_pred             ------cCCCCCC-CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecch
Q psy8308         172 ------LSHNNIP-GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL  244 (311)
Q Consensus       172 ------~~~~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (311)
                            ....+.. .............++|+++|+|||||||.||||++||+|+..++......+.+.+.++.   +..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~---l~~l  269 (651)
T PLN02736        193 GTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVH---ISYL  269 (651)
T ss_pred             cCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEE---EEeC
Confidence                  0000000 00000001112357899999999999999999999999998877666666667777764   3445


Q ss_pred             hhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |+.|.++.. ..+.....|+++++..   .++..+++.|+++++|+++.+|+++.+|+++.
T Consensus       270 Pl~h~~~~~-~~~~~l~~G~~i~~~~---~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~  326 (651)
T PLN02736        270 PLAHIYERV-NQIVMLHYGVAVGFYQ---GDNLKLMDDLAALRPTIFCSVPRLYNRIYDGI  326 (651)
T ss_pred             CHHHHHHHH-HHHHHHHcCCEEEEeC---CCHHHHHHHHHHhCCcEEecchHHHHHHHHHH
Confidence            555555432 2334445677887754   36889999999999999999999999988764

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.9e-34  Score=273.98  Aligned_cols=267  Identities=18%  Similarity=0.195  Sum_probs=188.6

Q ss_pred             hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308          18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL   97 (311)
Q Consensus        18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~   97 (311)
                      ..+...++.+.|.+.++++|+++|+.+...       +++||+||.++++++|++|.+           .+||+ |++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~-----------~~gd~-Val~~   74 (539)
T PRK06334         14 KLRSGKTVLESFLKLCSEMTTATVCWDEQL-------GKLSYNQVRKAVIALATKVSK-----------YPDQH-IGIMM   74 (539)
T ss_pred             ccCcCCcHHHHHHHHHHhCCCceEEEeCCC-------CcccHHHHHHHHHHHHHHHhh-----------ccCCe-EEEEc
Confidence            355567899999999999999999876432       257999999999999999963           25775 99999


Q ss_pred             CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc------cccccchhhhh---h
Q psy8308          98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG------RTVLSLPQLRL---L  168 (311)
Q Consensus        98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~---~  168 (311)
                      +|+++|+++++||+++|+++||+|+.++.+|+.++++++++++++++.+..........      ..+...+....   .
T Consensus        75 ~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  154 (539)
T PRK06334         75 PASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSF  154 (539)
T ss_pred             CCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccH
Confidence            99999999999999999999999999999999999999999999997543221111000      00000000000   0


Q ss_pred             hccc---CCCCCCCCcc-cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecch
Q psy8308         169 SASL---SHNNIPGESM-LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL  244 (311)
Q Consensus       169 ~~~~---~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (311)
                      ....   .....+.... .........++++++|+|||||||.||||++||+++..+.......+...+.++.   +..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~---l~~~  231 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVM---MSFL  231 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceE---EEec
Confidence            0000   0000000000 0001123457899999999999999999999999998776665556666766654   3334


Q ss_pred             hhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      +++|..+..+..+.....|+++++... .+++..+++.|+++++|++..+|+++..|+++.+.
T Consensus       232 p~~h~~g~~~~~~~~l~~G~~vv~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  293 (539)
T PRK06334        232 PPFHAYGFNSCTLFPLLSGVPVVFAYN-PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK  293 (539)
T ss_pred             chHhhhhhHHHHHHHHHcCCeEEEecC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhh
Confidence            555544433333444445777777543 35799999999999999999999999999987654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2.6e-34  Score=280.42  Aligned_cols=266  Identities=20%  Similarity=0.186  Sum_probs=178.5

Q ss_pred             HHHHHHHHh-hCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH
Q psy8308          26 HRIFEKNAA-LSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI  104 (311)
Q Consensus        26 ~~~~~~~a~-~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~  104 (311)
                      .+++++++. .+|+++|+++......  ..+.+||+||.++++++|++|++.        |+++||+ |+++++|++|++
T Consensus        91 ~~~l~~~~~~~~~~~~Al~~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~Gdr-V~i~~pn~~e~v  159 (666)
T PLN02654         91 YNCLDRNVEAGNGDKIAIYWEGNEPG--FDASLTYSELLDRVCQLANYLKDV--------GVKKGDA-VVIYLPMLMELP  159 (666)
T ss_pred             HHHHHHhhccCCCCCEEEEEEcCCCC--ceEEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHHH
Confidence            678888876 4899999987432211  123789999999999999999854        7788896 899999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh--------hhh--ccc---cc-----ccchhhh
Q psy8308         105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN--------LAY--KGR---TV-----LSLPQLR  166 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~--------~~~--~~~---~~-----~~~~~~~  166 (311)
                      +++|||+++|++++|+++.++++++.+++++++|+++|+++......        ...  ...   ..     ...+...
T Consensus       160 ~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
T PLN02654        160 IAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQL  239 (666)
T ss_pred             HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccc
Confidence            99999999999999999999999999999999999999976432100        000  000   00     0000000


Q ss_pred             hhhc-ccCCCC--------CCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHH-HHHHhhcCCCCCCc
Q psy8308         167 LLSA-SLSHNN--------IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRL-AWQWATFPYSPSER  236 (311)
Q Consensus       167 ~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~~~  236 (311)
                      .... ......        ................+|+++|+|||||||.||||+++|++++... ......+.+.+.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~  319 (666)
T PLN02654        240 AMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDV  319 (666)
T ss_pred             cccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcE
Confidence            0000 000000        0000000001112357899999999999999999999999986433 33334456777776


Q ss_pred             cceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         237 VGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +...   .++.+..+..+..+..+..|+++++...  ..+++..+++.|++++||+++++|+++++|+++.
T Consensus       320 ~~~~---~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  387 (666)
T PLN02654        320 YWCT---ADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDG  387 (666)
T ss_pred             EEEc---CCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhC
Confidence            4332   2222222222222223344777777643  2357999999999999999999999999998864

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-34  Score=281.15  Aligned_cols=266  Identities=18%  Similarity=0.228  Sum_probs=179.0

Q ss_pred             HHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH
Q psy8308          26 HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ  105 (311)
Q Consensus        26 ~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~  105 (311)
                      .+.+.+++..+|+++|+++.+.+.+...++++||+||.++++++|++|++.        |+++||+ |+++++|++|+++
T Consensus       178 ~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~Gdr-Vai~~pn~~e~vi  248 (728)
T PLN03052        178 ECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDAL--------GFEKGDA-IAIDMPMNVHAVI  248 (728)
T ss_pred             HHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHHHHH
Confidence            446666666789999999865432111234789999999999999999853        7888886 9999999999999


Q ss_pred             HHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--h-------hhhcccccccchhhh---hhh---c
Q psy8308         106 VLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--N-------LAYKGRTVLSLPQLR---LLS---A  170 (311)
Q Consensus       106 ~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--~-------~~~~~~~~~~~~~~~---~~~---~  170 (311)
                      ++|||+++|++++|++|.++++++.+++++++|+++|+++.....  .       .......+..++...   ...   .
T Consensus       249 a~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~  328 (728)
T PLN03052        249 IYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREG  328 (728)
T ss_pred             HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccC
Confidence            999999999999999999999999999999999999997542110  0       000000000000000   000   0


Q ss_pred             ccCCCC-CCCCc----ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchh
Q psy8308         171 SLSHNN-IPGES----MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALT  245 (311)
Q Consensus       171 ~~~~~~-~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (311)
                      .....+ .....    ...........+++++|+|||||||.||||+++|++++.........+.+.+.++...+ .++.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~-~~l~  407 (728)
T PLN03052        329 DMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWP-TNLG  407 (728)
T ss_pred             CccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEEC-CCcH
Confidence            000000 00000    00001111245899999999999999999999999987665444444567777764332 3333


Q ss_pred             hhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         246 FVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |..+...++.   .+..|+++++.... +++..+++.|++++||++.++|+++++|+++.
T Consensus       408 w~~g~~~v~~---~L~~Gat~vl~~g~-p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~  463 (728)
T PLN03052        408 WMMGPWLVYA---SLLNGATLALYNGS-PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN  463 (728)
T ss_pred             HHhHHHHHHH---HHHhCCEEEEeCCC-CCCChHHHHHHHHCCCEEEECHHHHHHHHhcC
Confidence            3333222233   33457788776542 35678999999999999999999999988754

>KOG1256|consensus

Probab=100.00  E-value=2.4e-34  Score=267.76  Aligned_cols=269  Identities=20%  Similarity=0.202  Sum_probs=189.4

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      -.|+++.|++.+...|+.+++..+........|..+||.|+.+++.+++.+|++.        |.+.++ .|+|++.||+
T Consensus        74 ~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~l--------G~~~~~-~VGIy~~N~p  144 (691)
T KOG1256|consen   74 PLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKL--------GVKEDS-KVGIYAFNRP  144 (691)
T ss_pred             cccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHh--------CCCCCc-eEEEeccCCh
Confidence            4689999999999999999998765311223456779999999999999999864        445455 5999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc--ccccchhhhhhhcc--------
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR--TVLSLPQLRLLSAS--------  171 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------  171 (311)
                      ||++.+.||...|.++||++.+++++++.|+++++++.++||+++.....+.....  ..+.+..++.+...        
T Consensus       145 EWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~  224 (691)
T KOG1256|consen  145 EWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKA  224 (691)
T ss_pred             hhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhh
Confidence            99999999999999999999999999999999999999999986554433322111  11112211111100        


Q ss_pred             -------cCCCCC--CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh--c----CCCCCCc
Q psy8308         172 -------LSHNNI--PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT--F----PYSPSER  236 (311)
Q Consensus       172 -------~~~~~~--~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--~----~~~~~~~  236 (311)
                             .+..+.  .+.........+..++|.|+|+|||||||+|||||+||+|+.+........  .    ....+|.
T Consensus       225 ~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv  304 (691)
T KOG1256|consen  225 ENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDV  304 (691)
T ss_pred             hcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCce
Confidence                   000000  000000111134578999999999999999999999999998854432211  1    1122455


Q ss_pred             cceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         237 VGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +.++   +|+.|.+-.+...+. ...|+.+-+.+   -|+..+.+.|++.|+|+++.||.+|+++.+...
T Consensus       305 ~lSy---LPLAHi~er~~~~~~-~~~G~~IgF~~---gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~  367 (691)
T KOG1256|consen  305 YLSY---LPLAHIFERVVELYT-FYIGAKIGFAR---GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQ  367 (691)
T ss_pred             EEEe---CcHHHHHHHHHHHhH-hhcccEEEEec---CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHH
Confidence            4444   555555554443322 24577777654   489999999999999999999999999987654

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.4e-34  Score=279.05  Aligned_cols=267  Identities=21%  Similarity=0.199  Sum_probs=183.7

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEeccc-CccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQ-DKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~-~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      ..++.++|.+.++++|+++|+.+... ......++.+||+|+.++++++|++|.+.        |+++||+ |+|+++|+
T Consensus        41 ~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~--------Gv~~gd~-V~i~~~n~  111 (660)
T PLN02430         41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRAS--------GAEPGSR-VGIYGSNC  111 (660)
T ss_pred             CCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCC
Confidence            46899999999999999999875421 11111234569999999999999999753        7788886 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc---------
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS---------  171 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  171 (311)
                      +||+++++||+++|+++||+++.++++++.+++++++++++|+++................+..+......         
T Consensus       112 ~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~  191 (660)
T PLN02430        112 PQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKAS  191 (660)
T ss_pred             HHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhh
Confidence            99999999999999999999999999999999999999999997643221111100000000000000000         


Q ss_pred             ------cCCCCC--CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh---c--CCCCCCccc
Q psy8308         172 ------LSHNNI--PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT---F--PYSPSERVG  238 (311)
Q Consensus       172 ------~~~~~~--~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~--~~~~~~~~~  238 (311)
                            ....+.  .... .........++|+++|+|||||||.||||++||+|+..++......   +  .+.+.++. 
T Consensus       192 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~-  269 (660)
T PLN02430        192 QIGVKTYSWIDFLHMGKE-NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVY-  269 (660)
T ss_pred             cCCcEEEEHHHHHHhhcc-CCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEE-
Confidence                  000000  0000 0001112357899999999999999999999999998765443221   1  34455553 


Q ss_pred             eeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         239 AFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                        ++.+|+.|.+...+. ......|+.+++..   .++..+++.|+++++|++..||++|.++.++.
T Consensus       270 --ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~---~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i  330 (660)
T PLN02430        270 --LSFLPLAHILDRMIE-EYFFRKGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFERIHEGI  330 (660)
T ss_pred             --EEeCcHHHHHHHHHH-HHHHHcCCEEEEeC---CChhhHHHHHHHhCCcEEEecHHHHHHHHHHH
Confidence              344566665554332 23344577776543   25788999999999999999999999988754

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=4.5e-34  Score=279.75  Aligned_cols=269  Identities=19%  Similarity=0.234  Sum_probs=180.5

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecc---------cCcc------ccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEE---------QDKD------TLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN   86 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~---------~~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~   86 (311)
                      ..++.++|++.++.+||++|+.++.         .+..      ...|+.+||+|+.++++++|++|.+.        |+
T Consensus        57 ~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~l--------G~  128 (696)
T PLN02387         57 ATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVAL--------GH  128 (696)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHh--------CC
Confidence            4689999999999999999995421         0010      12345689999999999999999864        67


Q ss_pred             CCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhh
Q psy8308          87 QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLR  166 (311)
Q Consensus        87 ~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  166 (311)
                      ++||+ |+|+++|++||+++++||+++|+++||+|+.++++++.+++++++++++|++............ ....+..+.
T Consensus       129 ~~gd~-Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~-~~~~l~~ii  206 (696)
T PLN02387        129 NKEER-VAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISS-QLETVKRVI  206 (696)
T ss_pred             CCCCE-EEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhh-ccCCceEEE
Confidence            78886 9999999999999999999999999999999999999999999999999997543322211110 011111111


Q ss_pred             hhhcccC----------------CCCC--CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh
Q psy8308         167 LLSASLS----------------HNNI--PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT  228 (311)
Q Consensus       167 ~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~  228 (311)
                      .+.....                ..+.  .... .........++|+++|+|||||||.||||++||+|+..++......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~  285 (696)
T PLN02387        207 YMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV  285 (696)
T ss_pred             EECCCCchhhhhhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhh
Confidence            0000000                0000  0000 0001112357899999999999999999999999998776554433


Q ss_pred             c-CCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeC------CCCCCChhHHHHHHhhcCceEEEeChHHHHHH
Q psy8308         229 F-PYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIP------RDVTRNPDQLIGTLEKYKVERLVLVPSLLRSM  301 (311)
Q Consensus       229 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~------~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~l  301 (311)
                      + .+.++++.   +..+|+.|.+...+..+ ....|+.+...      +.+..-+..+++.|+++++|++..||+++.+|
T Consensus       286 ~~~~~~~d~~---l~~lPl~Hi~~~~~~~~-~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l  361 (696)
T PLN02387        286 VPKLGKNDVY---LAYLPLAHILELAAESV-MAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV  361 (696)
T ss_pred             cCCCCCCCEE---EEECcHHHHHHHHHHHH-HHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHH
Confidence            3 35566654   34456666554332211 12223333332      21111134567899999999999999999999


Q ss_pred             HHHH
Q psy8308         302 LMFL  305 (311)
Q Consensus       302 l~~~  305 (311)
                      .++.
T Consensus       362 ~~~~  365 (696)
T PLN02387        362 RDGV  365 (696)
T ss_pred             HHHH
Confidence            8764

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.7e-33  Score=270.20  Aligned_cols=261  Identities=18%  Similarity=0.246  Sum_probs=182.6

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++|+++|+.+.+.        ++||+||.++++++|++|.+.        |+++||+ |+++++|+++
T Consensus         7 ~~~~~~~~~~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~--------Gv~~gd~-V~v~~~n~~~   69 (563)
T PLN02860          7 AHICQCLTRLATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRL--------GLRNGDV-VAIAALNSDL   69 (563)
T ss_pred             hHHHHHHHHHHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCCCHH
Confidence            4788999999999999999986432        579999999999999999853        7788886 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhh-----------cc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLS-----------AS  171 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  171 (311)
                      |+++++|++++|++++|+|+.++++|+.++++++++++++++..............+..+.......           ..
T Consensus        70 ~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  149 (563)
T PLN02860         70 YLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSF  149 (563)
T ss_pred             HHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhc
Confidence            9999999999999999999999999999999999999999975421100000000000000000000           00


Q ss_pred             cCCCCCCCCc-ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308         172 LSHNNIPGES-MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      .......... ..........++++++|+|||||||.||||++||+++..+.......+.+.+.++..   ...++.|..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l---~~~pl~h~~  226 (563)
T PLN02860        150 LTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYL---HTAPLCHIG  226 (563)
T ss_pred             cccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEE---EecCchhhc
Confidence            0000000000 000001123568999999999999999999999999987655554556667666543   333333333


Q ss_pred             HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       251 ~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +.. ..+.....|+++++.+.  +++..+++.|+++++|++..+|+++..|++..+
T Consensus       227 g~~-~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  279 (563)
T PLN02860        227 GLS-SALAMLMVGACHVLLPK--FDAKAALQAIKQHNVTSMITVPAMMADLISLTR  279 (563)
T ss_pred             cHH-HHHHHHHcCceEEecCC--CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhh
Confidence            221 12233334677776654  579999999999999999999999999988654

>KOG1176|consensus

Probab=100.00  E-value=1.7e-33  Score=262.58  Aligned_cols=249  Identities=24%  Similarity=0.339  Sum_probs=176.1

Q ss_pred             eEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEe
Q psy8308          40 TALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLP  119 (311)
Q Consensus        40 ~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp  119 (311)
                      +.+++...++     +++||+|+.+++.|+|.+|.+.+      .++++|| +|++++||++++.++++||+.+|+++.|
T Consensus        34 ~~~i~~~~~g-----~~~T~~e~~~~~~r~A~~L~~~~------~~i~~gD-vV~i~~pNs~~~~~~~la~~~~Ga~~~~  101 (537)
T KOG1176|consen   34 TSLVYQDSDG-----RELTYSELHDRCRRLASALSELG------LGIKKGD-VVGILAPNTPEFVELALAVPMAGAVLNP  101 (537)
T ss_pred             ceEEEecCCC-----cEEcHHHHHHHHHHHHHHHHhcC------CCCCCCC-EEEEEcCCCHHHHHHHHHHHHcCccccc
Confidence            6777655321     37899999999999999998642      2467788 4999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc---cccccchhh---hhhhc---ccC-CCCCCCCcccCCCCCC
Q psy8308         120 LDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG---RTVLSLPQL---RLLSA---SLS-HNNIPGESMLHSDNNN  189 (311)
Q Consensus       120 ~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~---~~~-~~~~~~~~~~~~~~~~  189 (311)
                      +||.+++.|+.+.+++++|+++|++............   ..+..+...   .....   ... ............ ...
T Consensus       102 ~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  180 (537)
T KOG1176|consen  102 LNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG-IRP  180 (537)
T ss_pred             cCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcc-ccc
Confidence            9999999999999999999999998765443322111   111111100   00000   000 000000000011 233


Q ss_pred             CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeC
Q psy8308         190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIP  269 (311)
Q Consensus       190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  269 (311)
                      ..++|++.|+|||||||.||||++||+++..+.............++   ++..+|++|..+...........|++++..
T Consensus       181 ~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v---~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~  257 (537)
T KOG1176|consen  181 VSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDV---YLCTLPLFHIYGLITLLLSLLAGGTTIICL  257 (537)
T ss_pred             CCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCce---EEEechHHHHhHHHHHHHHHHhCCceEEEC
Confidence            56699999999999999999999999999877655544445555554   344566665555433223244457778777


Q ss_pred             CCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         270 RDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       270 ~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +.  ++++.+++.|++||||+++++|+++.+|++++.
T Consensus       258 ~~--f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~  292 (537)
T KOG1176|consen  258 RK--FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI  292 (537)
T ss_pred             CC--CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc
Confidence            74  489999999999999999999999999999763

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.8e-33  Score=272.49  Aligned_cols=267  Identities=22%  Similarity=0.234  Sum_probs=184.9

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++++++++++|+++|+.+.+...   .++++||+||.++++++|++|.+.        |+++||+ |+++++|++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~---~~~~~Ty~el~~~v~~~A~~L~~~--------Gv~~gd~-Vai~~~n~~  105 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAERGADG---GWRRLTYAEALERVRAIAQALLDR--------GLSAERP-LMILSGNSI  105 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeeccCCC---ceeEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEecCCCH
Confidence            3578999999999999999998753211   134789999999999999999853        7788886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCc-----HHHHHHHHHHcCCcEEEecCchh-hhhhhhc-c--cccccchhh------h
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAP-----EQRVKHILNEARPLLVIAENEQA-CENLAYK-G--RTVLSLPQL------R  166 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~-----~~el~~~l~~s~~~~vi~~~~~~-~~~~~~~-~--~~~~~~~~~------~  166 (311)
                      +|+++++|++++|+++||+||.++     .+|+.+++++++++++|+++... ....... .  ..+......      .
T Consensus       106 e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (614)
T PRK08180        106 EHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAAT  185 (614)
T ss_pred             HHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccc
Confidence            999999999999999999999998     79999999999999999975321 1111110 0  000000000      0


Q ss_pred             hhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCC--CCCccceeecch
Q psy8308         167 LLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYS--PSERVGAFKTAL  244 (311)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  244 (311)
                      ....... .  ..............++|+++|+|||||||.||||++||+++..+.......+...  ..++   ++..+
T Consensus       186 ~~~~~~~-~--~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~---~l~~l  259 (614)
T PRK08180        186 PFAALLA-T--PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPV---LVDWL  259 (614)
T ss_pred             cHHHHhc-c--ccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcE---EEEec
Confidence            0000000 0  0000000001123578999999999999999999999999987765554444443  2233   34456


Q ss_pred             hhhhhHHHHHHhhHhhcCCcEEEeCCC-CC-CChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         245 TFVDAVSEIWGPLLSARCGGVLIIPRD-VT-RNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~-~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      |++|.++..+..+..+..|+++++.+. +. .++.++++.|+++++|+++++|+++.+|++..+
T Consensus       260 Pl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~  323 (614)
T PRK08180        260 PWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALE  323 (614)
T ss_pred             chHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHH
Confidence            666665544434444555777777542 21 124578899999999999999999999988654

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=3.7e-33  Score=270.96  Aligned_cols=266  Identities=19%  Similarity=0.238  Sum_probs=178.6

Q ss_pred             HHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH
Q psy8308          25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI  104 (311)
Q Consensus        25 l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~  104 (311)
                      ..+++.+++..+|+++|+++.+....  ..+++||+||.++++++|++|++.        |+++||+ |+++++|++|++
T Consensus        54 ~~~~l~~~~~~~p~~~Al~~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~Gd~-V~i~~~n~~e~v  122 (628)
T TIGR02316        54 CHNALDRHLDERGEQLALVTVSSETG--QERTLTYRQLHREVNVFASALRAL--------GVGRGDR-VLIYMPMIAEAV  122 (628)
T ss_pred             HHHHHHHHhCcCCCCeEEEEEcCCCC--ceEEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHHH
Confidence            36788888888999999987432111  123689999999999999999853        7888996 899999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhh---hc----ccccccchhhh-hh
Q psy8308         105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLA---YK----GRTVLSLPQLR-LL  168 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~---~~----~~~~~~~~~~~-~~  168 (311)
                      ++++||+++|++++|+++.++.+++.+++++++|+++|+++.....        ...   ..    ...+..++... ..
T Consensus       123 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  202 (628)
T TIGR02316       123 FAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM  202 (628)
T ss_pred             HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Confidence            9999999999999999999999999999999999999996532100        000   00    00000000000 00


Q ss_pred             ---h-cccCCCCCCCC-cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHH-HHHHhhcCCCCCCccceeec
Q psy8308         169 ---S-ASLSHNNIPGE-SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRL-AWQWATFPYSPSERVGAFKT  242 (311)
Q Consensus       169 ---~-~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~~~~~~~~~  242 (311)
                         . ........... .....+.....++++++|+|||||||.||||+++|+++.... ......+.+.+.++.... .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~-~  281 (628)
T TIGR02316       203 RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSA-S  281 (628)
T ss_pred             CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEc-C
Confidence               0 00000000000 000001111356899999999999999999999999986443 233334566776654332 2


Q ss_pred             chhhhhhH-HHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         243 ALTFVDAV-SEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       243 ~~~~~~~~-~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ++.+..+. ..++.++.   .|+++++...  ..+++..+++.|++++||+++++|+++++|+++.
T Consensus       282 ~~~~~~g~~~~~~~~L~---~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  344 (628)
T TIGR02316       282 DVGWVVGHSYIVYAPLL---AGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQD  344 (628)
T ss_pred             CCCeeehhhHHHHHHHh---ccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcC
Confidence            33332221 22344444   4667777553  2457999999999999999999999999888754

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.4e-33  Score=270.30  Aligned_cols=267  Identities=21%  Similarity=0.229  Sum_probs=173.0

Q ss_pred             hHHHHHHHHHhh--CCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          24 QLHRIFEKNAAL--SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        24 ~l~~~~~~~a~~--~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ...+++++++..  +|+++|+++...+..  ..+++||+||.++|+++|++|++.        |+++||+ |+++++|++
T Consensus        60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~GDr-V~i~~~n~~  128 (647)
T PTZ00237         60 TCYNVLDIHVKNPLKRDQDALIYECPYLK--KTIKLTYYQLYEKVCEFSRVLLNL--------NISKNDN-VLIYMANTL  128 (647)
T ss_pred             HHHHHHHHhhcccCCCCceEEEEEcCCCC--ceEEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCH
Confidence            347788888764  799999987533211  123689999999999999999853        7888996 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhc-c------cccccchhhh
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYK-G------RTVLSLPQLR  166 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~-~------~~~~~~~~~~  166 (311)
                      |+++++|||+++|++++|+++.++++++.+++++++|+++|+++.....        ..... .      ..+.......
T Consensus       129 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~  208 (647)
T PTZ00237        129 EPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRND  208 (647)
T ss_pred             HHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCC
Confidence            9999999999999999999999999999999999999999996521100        00000 0      0000000000


Q ss_pred             hh-hccc----CCCCCCC--------------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH-H
Q psy8308         167 LL-SASL----SHNNIPG--------------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ-W  226 (311)
Q Consensus       167 ~~-~~~~----~~~~~~~--------------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~-~  226 (311)
                      .. ....    .....+.              ...........+++|+++|+|||||||.||||+++|++++...... .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~  288 (647)
T PTZ00237        209 ITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWR  288 (647)
T ss_pred             cccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHH
Confidence            00 0000    0000000              0000001122457899999999999999999999999854333222 2


Q ss_pred             hhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCC----hhHHHHHHhhcCceEEEeChHHHHHHH
Q psy8308         227 ATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRN----PDQLIGTLEKYKVERLVLVPSLLRSML  302 (311)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----p~~~~~~i~~~~vt~~~~vP~~~~~ll  302 (311)
                      ........++.... .++.+......++.++.   .|+++++.+...++    +..+++.|++++||+++++|+++++|+
T Consensus       289 ~~~~~~~~d~~~~~-~~~~w~~~~~~~~~~l~---~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~  364 (647)
T PTZ00237        289 SIIEKDIPTVVFSH-SSIGWVSFHGFLYGSLS---LGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLI  364 (647)
T ss_pred             HhcCCCCCcEEEEc-CCCceEeeHHHHHHHHh---CCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHH
Confidence            22334444543222 22222211122333333   47777775431112    688999999999999999999999998


Q ss_pred             HHH
Q psy8308         303 MFL  305 (311)
Q Consensus       303 ~~~  305 (311)
                      ++.
T Consensus       365 ~~~  367 (647)
T PTZ00237        365 KTD  367 (647)
T ss_pred             hhC
Confidence            753

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.4e-33  Score=271.14  Aligned_cols=268  Identities=20%  Similarity=0.246  Sum_probs=179.5

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ...+.+.++++.+|+++|+++.+.+..  ..+++||+||.++++++|++|++.        |+++||+ |+++++|++++
T Consensus        58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~e~  126 (625)
T TIGR02188        58 VSYNCVDRHLEARPDKVAIIWEGDEPG--EVRKITYRELHREVCRFANVLKSL--------GVKKGDR-VAIYMPMIPEA  126 (625)
T ss_pred             HHHHHHHHhhccCCCCeEEEEEcCCCC--ceEEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHH
Confidence            346778888889999999987543111  124789999999999999999853        7788886 89999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhcccccc-cchhhhhhhccc-C
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYKGRTVL-SLPQLRLLSASL-S  173 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~-~  173 (311)
                      +++++||+++|++++|+++.++++++.+++++++++++|+++.....        .....-.... .++......... .
T Consensus       127 ~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (625)
T TIGR02188       127 AIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNP  206 (625)
T ss_pred             HHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCC
Confidence            99999999999999999999999999999999999999997642110        0000000000 000000000000 0


Q ss_pred             --C--------CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceeec
Q psy8308         174 --H--------NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFKT  242 (311)
Q Consensus       174 --~--------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (311)
                        .        .................++++++|+|||||||.||||+++|+++...... ....+.+.+.++.... .
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~-~  285 (625)
T TIGR02188       207 VPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCT-A  285 (625)
T ss_pred             cCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEEC-C
Confidence              0        00000000001112245689999999999999999999999998654332 2233456666654322 2


Q ss_pred             chhhhhhH-HHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         243 ALTFVDAV-SEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       243 ~~~~~~~~-~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ++.+..+. ..++.++   ..|+++++...  ..+++..+++.|+++++|++.++|++++.|+++.+
T Consensus       286 ~~~~~~g~~~~~~~~l---~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  349 (625)
T TIGR02188       286 DVGWITGHSYIVYGPL---ANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD  349 (625)
T ss_pred             CchhhhccHHHHHHHH---HcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC
Confidence            22222111 1223333   34777776542  23479999999999999999999999999987643

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.6e-33  Score=271.50  Aligned_cols=264  Identities=18%  Similarity=0.228  Sum_probs=178.9

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEeccc-----------Cccc--------cccCcccHHHHHHHHHHHHHHHHhhhccCCC
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQ-----------DKDT--------LVITNETYSELNSASNQLARGLLHFLHTKAV   82 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~-----------~~~~--------~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~   82 (311)
                      ..++.++|.++++++||++|+.+...           ....        ..++.+||+||.++++++|++|.+.      
T Consensus        68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~------  141 (700)
T PTZ00216         68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAEL------  141 (700)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHh------
Confidence            46899999999999999999987421           0000        1245789999999999999999864      


Q ss_pred             CCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc------
Q psy8308          83 PNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG------  156 (311)
Q Consensus        83 ~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~------  156 (311)
                        |+++||+ |+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++............      
T Consensus       142 --Gv~~gd~-V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~  218 (700)
T PTZ00216        142 --GLTKGSN-VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPN  218 (700)
T ss_pred             --CCCCCCE-EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCc
Confidence              7788886 9999999999999999999999999999999999999999999999999997643321111100      


Q ss_pred             cccccchhhhh-----------hhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH
Q psy8308         157 RTVLSLPQLRL-----------LSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ  225 (311)
Q Consensus       157 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~  225 (311)
                      ..+..++....           .........  .............++|+++|+|||||||.||||++||+|+..++...
T Consensus       219 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~  296 (700)
T PTZ00216        219 TTIIYLDSLPASVDTEGCRLVAWTDVVAKGH--SAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILAL  296 (700)
T ss_pred             eEEEEECCCccccccCCceEEEHHHHHHhCC--ccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHH
Confidence            00110100000           000000000  00000011122357899999999999999999999999998776554


Q ss_pred             Hhhc----C-CCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHH-------HHhhcCceEEEe
Q psy8308         226 WATF----P-YSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIG-------TLEKYKVERLVL  293 (311)
Q Consensus       226 ~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~-------~i~~~~vt~~~~  293 (311)
                      ...+    . ..+.++.   ++.+|+.|.+...+.. .....|+.+.+.     ++..+++       .|+++++|++..
T Consensus       297 ~~~~~~~~~~~~~~d~~---ls~lPl~H~~~~~~~~-~~l~~G~~v~~~-----~~~~l~~~~~~~~~~l~~~~pT~~~~  367 (700)
T PTZ00216        297 EDRLNDLIGPPEEDETY---CSYLPLAHIMEFGVTN-IFLARGALIGFG-----SPRTLTDTFARPHGDLTEFRPVFLIG  367 (700)
T ss_pred             HhhcccccCCCCCCCEE---EEEChHHHHHHHHHHH-HHHHcCCEEEEC-----CHHHhhhhhccccchHHHcCCcEEEe
Confidence            4322    1 2444543   3345555544432221 123346666542     3555555       689999999999


Q ss_pred             ChHHHHHHHHHH
Q psy8308         294 VPSLLRSMLMFL  305 (311)
Q Consensus       294 vP~~~~~ll~~~  305 (311)
                      ||+++.+|.++.
T Consensus       368 vP~~~~~l~~~~  379 (700)
T PTZ00216        368 VPRIFDTIKKAV  379 (700)
T ss_pred             chHHHHHHHHHH
Confidence            999999988754

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.3e-32  Score=263.08  Aligned_cols=274  Identities=17%  Similarity=0.201  Sum_probs=194.0

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      -|+..++.+.+.+.++.+|+++|+++.+.+.  ..++.+||+||.++++++|++|.+.        |+++||+ |+++++
T Consensus        20 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~--~~~~~~Ty~el~~~~~~~a~~L~~~--------g~~~g~~-Val~~~   88 (547)
T PRK13295         20 HWHDRTINDDLDACVASCPDKTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARL--------GVGRGDV-VSCQLP   88 (547)
T ss_pred             CCcCCCHHHHHHHHHHHCCCceEEEecCCCc--cccceeeHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECC
Confidence            5666789999999999999999998754221  1234789999999999999999864        6677785 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh----hhhhhcccccccchhhhhhh-----
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC----ENLAYKGRTVLSLPQLRLLS-----  169 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----  169 (311)
                      |+++|++++||++++|++++|++|.++.+++.++++.++++++++++....    ............+..+....     
T Consensus        89 n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (547)
T PRK13295         89 NWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGAD  168 (547)
T ss_pred             CChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCcc
Confidence            999999999999999999999999999999999999999999999764210    00000000000000000000     


Q ss_pred             ---cccCCCCCCCCcc--cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecch
Q psy8308         170 ---ASLSHNNIPGESM--LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL  244 (311)
Q Consensus       170 ---~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (311)
                         .............  .........++++++++|||||||.||||++||+++..+.......+.+.+.++..   ...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l---~~~  245 (547)
T PRK13295        169 SFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVIL---MAS  245 (547)
T ss_pred             CHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEE---Eec
Confidence               0000000000000  00011123568999999999999999999999999988776666666777766643   334


Q ss_pred             hhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      ++.|..+.++..+.....|.++++...  +++..+++.|+++++|++..+|+++..|+.+.+..
T Consensus       246 p~~h~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~  307 (547)
T PRK13295        246 PMAHQTGFMYGLMMPVMLGATAVLQDI--WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES  307 (547)
T ss_pred             CchhhhhHHHHHHHHHHcCCeEEeCCC--CCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc
Confidence            444444444444444556888887663  47999999999999999999999999998866543

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-32  Score=262.15  Aligned_cols=261  Identities=24%  Similarity=0.257  Sum_probs=185.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++++++++++||++|+++.+.        ++||+||.++++++|+.|.+.        |+++||+ |+++++|+++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~--------gi~~gd~-V~i~~~n~~~  111 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLAL--------GVRAGDG-VAVLARNHRG  111 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHH
Confidence            4899999999999999999987542        679999999999999999854        6677886 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccC--CCCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS--HNNIPGE  180 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  180 (311)
                      |+++++||+++|+++||+++.++.+++.++++.++++++|++.+........ ......+..+........  .......
T Consensus       112 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (549)
T PRK07788        112 FVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDEPSGSTDETL  190 (549)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccccCCcCcccH
Confidence            9999999999999999999999999999999999999999976543221110 000000000000000000  0000000


Q ss_pred             -c---ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHh
Q psy8308         181 -S---MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGP  256 (311)
Q Consensus       181 -~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
                       .   ...........++.++++|||||||.||||++||+++..........+.+.+.++..   ...+++|..+.. ..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~---~~~p~~~~~g~~-~~  266 (549)
T PRK07788        191 DDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTL---LPAPMFHATGWA-HL  266 (549)
T ss_pred             HHHhcCCCCCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEE---EccchHHHHHHH-HH
Confidence             0   000011112356789999999999999999999999987766655566666666542   234444443322 12


Q ss_pred             hHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         257 LLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       257 ~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      +.....|+++++...  ++|..+++.|+++++|++.++|+++..|++..+.
T Consensus       267 ~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  315 (549)
T PRK07788        267 TLAMALGSTVVLRRR--FDPEATLEDIAKHKATALVVVPVMLSRILDLGPE  315 (549)
T ss_pred             HHHHHhCCEEEECCC--CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccc
Confidence            223445778877753  5899999999999999999999999999986543

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.5e-33  Score=269.30  Aligned_cols=266  Identities=19%  Similarity=0.195  Sum_probs=178.2

Q ss_pred             HHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH
Q psy8308          26 HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ  105 (311)
Q Consensus        26 ~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~  105 (311)
                      .+.+.++++++|+++|+++.+....  ..+++||+||.++++++|++|++.        |+++||+ |+++++|++++++
T Consensus        70 ~~~l~~~~~~~p~~~Al~~~~~~~~--~~~~lTy~eL~~~v~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~e~~~  138 (637)
T PRK00174         70 YNCLDRHLKTRGDKVAIIWEGDDPG--DSRKITYRELHREVCRFANALKSL--------GVKKGDR-VAIYMPMIPEAAV  138 (637)
T ss_pred             HHHHHHhhccCCCCeEEEEECCCCC--ceEEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHHHH
Confidence            5678888899999999997543210  124689999999999999999853        7788886 8999999999999


Q ss_pred             HHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhcccccccchhhhhhhcc---cCC
Q psy8308         106 VLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYKGRTVLSLPQLRLLSAS---LSH  174 (311)
Q Consensus       106 ~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~  174 (311)
                      +++||+++|++++|++|.++.+++.+++++++++++|+++.....        ............+.+......   ...
T Consensus       139 ~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (637)
T PRK00174        139 AMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDW  218 (637)
T ss_pred             HHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCc
Confidence            999999999999999999999999999999999999986543210        000000000000000000000   000


Q ss_pred             --------CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceeecchh
Q psy8308         175 --------NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFKTALT  245 (311)
Q Consensus       175 --------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  245 (311)
                              .+...............++|+++|+|||||||.||||+++|++++.+... ....+.+.+.++...   ..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~  295 (637)
T PRK00174        219 VEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWC---TAD  295 (637)
T ss_pred             CCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEE---cCC
Confidence                    00000000001111235689999999999999999999999998754433 223345666665432   223


Q ss_pred             hhhhHHHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         246 FVDAVSEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +.+..+..+..+..+..|+++++...  ..+++..+++.|++++||++.++|++++.|++..
T Consensus       296 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  357 (637)
T PRK00174        296 VGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEG  357 (637)
T ss_pred             chHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcC
Confidence            33222222222233345777776542  2357999999999999999999999999998764

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.9e-34  Score=245.34  Aligned_cols=271  Identities=19%  Similarity=0.233  Sum_probs=204.5

Q ss_pred             hhhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEE
Q psy8308          17 EKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS   96 (311)
Q Consensus        17 ~~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~   96 (311)
                      +..|.++++.+++.++|+++||++|+++.++        ++||+||+++++++|.+|++        .|+++||+ |.+.
T Consensus        22 ~GyW~d~~l~d~L~~~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~--------lGi~~Gd~-vlvQ   84 (542)
T COG1021          22 KGYWQDRTLTDILTDHAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRR--------LGIKPGDT-VLVQ   84 (542)
T ss_pred             cCcccCCcHHHHHHHHHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHh--------cCCCCCCE-EEEE
Confidence            6689999999999999999999999998764        57999999999999999985        48899997 8899


Q ss_pred             eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh---hhhhh--cccccccchhhhhhhcc
Q psy8308          97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC---ENLAY--KGRTVLSLPQLRLLSAS  171 (311)
Q Consensus        97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~  171 (311)
                      +||..||++++||++|+|+++|..-|.....||.+.++.++|+.+|++.....   .....  ..+ -..+..+... .+
T Consensus        85 LpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~-~~tlr~v~v~-ge  162 (542)
T COG1021          85 LPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAK-HPTLRHVIVA-GE  162 (542)
T ss_pred             CCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhh-CCcceEEEEc-cC
Confidence            99999999999999999999999999999999999999999999998653211   00000  000 0011111110 11


Q ss_pred             cCCC----CCCCCc-ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhh
Q psy8308         172 LSHN----NIPGES-MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF  246 (311)
Q Consensus       172 ~~~~----~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (311)
                      ....    ...... .......+.+++++++++.+.||||+||-+..||+.+.++.......+.+.+++++   +..++.
T Consensus       163 ~~~~~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvy---L~~LP~  239 (542)
T COG1021         163 AEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVY---LCALPA  239 (542)
T ss_pred             CCCcchhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceE---EEeccc
Confidence            0000    000000 01112234567889999999999999999999999998887777777788888874   555666


Q ss_pred             hhhHHHHHH-hhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhCCC
Q psy8308         247 VDAVSEIWG-PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGTN  311 (311)
Q Consensus       247 ~~~~~~~~~-~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~~~  311 (311)
                      .|++..... .+-....|+++|+.++  .+|+..+.+|++|+||+..+||+....++++.+++..|
T Consensus       240 AHNfplssPG~LGv~~agG~VVla~~--psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~  303 (542)
T COG1021         240 AHNFPLSSPGALGVFLAGGTVVLAPD--PSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERAD  303 (542)
T ss_pred             ccCCCCCCcchhheeeeccEEEECCC--CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCC
Confidence            666543322 2333455888888764  57999999999999999999999999999999876543

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-32  Score=266.53  Aligned_cols=270  Identities=21%  Similarity=0.211  Sum_probs=182.3

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|+++++.+||++|+.+.+.+.  ..++.+||+||.++++++|++|++        .|+++||+ |+++++|++
T Consensus        48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~--~~~~~~Ty~el~~~v~~lA~~L~~--------~Gv~~gd~-V~i~~~n~~  116 (624)
T PRK12582         48 PRSIPHLLAKWAAEAPDRPWLAQREPGH--GQWRKVTYGEAKRAVDALAQALLD--------LGLDPGRP-VMILSGNSI  116 (624)
T ss_pred             ccCHHHHHHHHHHHCCCchheecccCCC--CceEEeEHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEecCCCH
Confidence            4578999999999999999998753211  123478999999999999999975        37788886 899999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcH-----HHHHHHHHHcCCcEEEecCchhhhh-hhhc---ccccccchhh------h
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPE-----QRVKHILNEARPLLVIAENEQACEN-LAYK---GRTVLSLPQL------R  166 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~-----~el~~~l~~s~~~~vi~~~~~~~~~-~~~~---~~~~~~~~~~------~  166 (311)
                      +|+++++||+++|++++|++|.++.     +++.+++++++++++|+++...... ....   ...+......      .
T Consensus       117 e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  196 (624)
T PRK12582        117 EHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASI  196 (624)
T ss_pred             HHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccc
Confidence            9999999999999999999999985     9999999999999999975421111 1000   0000000000      0


Q ss_pred             hhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhh
Q psy8308         167 LLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTF  246 (311)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (311)
                      ....... .. .. ...........++++++|+|||||||.||||++||+++..+.............+.....+..+++
T Consensus       197 ~~~~~~~-~~-~~-~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl  273 (624)
T PRK12582        197 AFADLAA-TP-PT-AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPW  273 (624)
T ss_pred             cHHHHhh-cC-Cc-chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechH
Confidence            0000000 00 00 000000112356899999999999999999999999998766544333333332101123445666


Q ss_pred             hhhHHHHHHhhHhhcCCcEEEeCCCCCCCh---hHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         247 VDAVSEIWGPLLSARCGGVLIIPRDVTRNP---DQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p---~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +|.++..+..+..+..|+++++.+.. +++   ..+++.++++++|+++.+|+++.+|++..+
T Consensus       274 ~h~~g~~~~~~~~l~~G~tvvl~~~~-~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  335 (624)
T PRK12582        274 NHTMGGNANFNGLLWGGGTLYIDDGK-PLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAME  335 (624)
T ss_pred             HHHHhHHHHHHHHHhCceEEEEcCCC-cccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHh
Confidence            66655433333334457788776432 223   456788999999999999999999987643

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.2e-32  Score=265.61  Aligned_cols=270  Identities=17%  Similarity=0.163  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++|+++|+.+...+......+++||+||.++++++|++|++.        |+++||+ |+++++|+++
T Consensus        25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~--------Gi~~gd~-V~i~~~n~~e   95 (632)
T PRK07529         25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSL--------GVGPGDV-VAFLLPNLPE   95 (632)
T ss_pred             CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHH
Confidence            378999999999999999998743211111134789999999999999999864        6777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh----hhhhhcccccccchhhhhhhcc-------
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC----ENLAYKGRTVLSLPQLRLLSAS-------  171 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------  171 (311)
                      +++++|||+++| +++|+|+.++++++.+++++++++++|++.....    ............+..+......       
T Consensus        96 ~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  174 (632)
T PRK07529         96 THFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPK  174 (632)
T ss_pred             HHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccc
Confidence            999999999999 6799999999999999999999999999653211    0000000000000000000000       


Q ss_pred             ---------------cCCCC-CCCCc-ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCC
Q psy8308         172 ---------------LSHNN-IPGES-MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPS  234 (311)
Q Consensus       172 ---------------~~~~~-~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~  234 (311)
                                     ..... ..... ..........++++++++|||||||.||||++||+++..+.......+.+.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~  254 (632)
T PRK07529        175 RLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPG  254 (632)
T ss_pred             cccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCC
Confidence                           00000 00000 00001112356899999999999999999999999998776555555566666


Q ss_pred             CccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCC-C---hhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         235 ERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR-N---PDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-~---p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ++.   +...+++|..+.+...+.....|++++++....+ +   ...+++.|+++++|++.++|+++..|++..
T Consensus       255 d~~---l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  326 (632)
T PRK07529        255 DTV---FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP  326 (632)
T ss_pred             CEE---EEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence            653   3344555444433333444445778877642211 2   357899999999999999999999998754

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-32  Score=257.81  Aligned_cols=266  Identities=18%  Similarity=0.251  Sum_probs=187.3

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.+++.++++++|+++|+++.+..      +.+||+||.++++++|++|.+.        |+++||+ |+|+++|++
T Consensus        15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~--------gv~~gd~-V~i~~~n~~   79 (534)
T PRK05852         15 GPRIADLVEVAATRLPEAPALVVTADR------IAISYRDLARLVDDLAGQLTRS--------GLLPGDR-VALRMGSNA   79 (534)
T ss_pred             cccHHHHHHHHHHhCCCCcEEEecCCC------CcccHHHHHHHHHHHHHHHHhc--------CCCCCCE-EEEECCCcH
Confidence            468999999999999999999875431      2579999999999999999753        6777885 899999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc--cc-ccchhhhhhh-cccC--CC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR--TV-LSLPQLRLLS-ASLS--HN  175 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~--~~  175 (311)
                      +|+++++|++++|++++|++|.++.+++.+++++++++++|++.............  .. .......... ....  ..
T Consensus        80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (534)
T PRK05852         80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLD  159 (534)
T ss_pred             HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccc
Confidence            99999999999999999999999999999999999999999865322111000000  00 0000000000 0000  00


Q ss_pred             CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHH
Q psy8308         176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWG  255 (311)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                      .... ............++.++++|||||||.||||+++|+++...+......+.+.+.++..   ...++.|..+....
T Consensus       160 ~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~p~~~~~g~~~~  235 (534)
T PRK05852        160 AATE-PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATV---AVMPLYHGHGLIAA  235 (534)
T ss_pred             cccC-CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEE---EecCcchhHHHHHH
Confidence            0000 0000001112246789999999999999999999999988776666666677666543   33444444443333


Q ss_pred             hhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         256 PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .+.....|++++++....+++..+++.|+++++|+++.+|+++..|+++..
T Consensus       236 ~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  286 (534)
T PRK05852        236 LLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAA  286 (534)
T ss_pred             HHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcc
Confidence            333344577888765445689999999999999999999999999988654

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-32  Score=263.33  Aligned_cols=259  Identities=22%  Similarity=0.272  Sum_probs=188.8

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      ...++.+.+.+.++++|+++|+++.+.        .+||+||.++++++|++|.+.        |+.+||+ |+++++|+
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~--------g~~~gd~-V~i~~~n~   97 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAAR--------GVGKGDV-VALLMENR   97 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhc--------CCCCCCE-EEEECCCC
Confidence            346899999999999999999997543        579999999999999999753        6677785 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc-----ccccch--------hhhh
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR-----TVLSLP--------QLRL  167 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~-----~~~~~~--------~~~~  167 (311)
                      ++|+++++||+++|++++|+++.++.+++.++++.++++++|++.............     .+....        ....
T Consensus        98 ~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (600)
T PRK08279         98 PEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYED  177 (600)
T ss_pred             HHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHH
Confidence            999999999999999999999999999999999999999999976533211111000     000000        0000


Q ss_pred             hhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhh
Q psy8308         168 LSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV  247 (311)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (311)
                      .....  ...+..  ..........+++++|+|||||||.||||++||+++..++......+.+.+.++.   +...+++
T Consensus       178 ~~~~~--~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~---l~~~pl~  250 (600)
T PRK08279        178 LAAAA--AGAPTT--NPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVL---YCCLPLY  250 (600)
T ss_pred             Hhhhc--ccCCcc--CCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEE---EEecCch
Confidence            00000  000000  0011122356889999999999999999999999999887766666777777764   3334444


Q ss_pred             hhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       248 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |..+.....+.....|+.+++...  +++..+++.|+++++|++.++|++++.|++..
T Consensus       251 h~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~  306 (600)
T PRK08279        251 HNTGGTVAWSSVLAAGATLALRRK--FSASRFWDDVRRYRATAFQYIGELCRYLLNQP  306 (600)
T ss_pred             hhhhHHHHHHHHHhcCcEEEEcCC--CCHHHHHHHHHHhcceEEeehHHHHHHHHhCC
Confidence            444433332333345778877664  47899999999999999999999999888754

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-32  Score=259.17  Aligned_cols=257  Identities=18%  Similarity=0.206  Sum_probs=182.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++||++|+.+.+.        .+||+||+++++++|++|.+.        |+++||+ |+++++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~--------g~~~g~~-V~i~~~n~~~  105 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQAL--------PIGEPRV-VGIMCRNHRG  105 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEecCcHH
Confidence            5789999999999999999986432        579999999999999999753        6677885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhccc---CCCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASL---SHNNIPG  179 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  179 (311)
                      |+++++|++++|+++||+++.++.+++.+++++++++++|++............ ...............   .......
T Consensus       106 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  184 (537)
T PRK13382        106 FVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDEDHDLTVEVLIA  184 (537)
T ss_pred             HHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCcccccHHHHhh
Confidence            999999999999999999999999999999999999999997553221111000 000000000000000   0000000


Q ss_pred             CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                      ..  ........+++.++++|||||||.||||+++|+++..+.......+.....++..   ...+++|..+. ...+..
T Consensus       185 ~~--~~~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l---~~~p~~~~~g~-~~~~~~  258 (537)
T PRK13382        185 AH--AGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTV---IVAPMFHAWGF-SQLVLA  258 (537)
T ss_pred             cc--CcCCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEE---EecChHhhhHH-HHHHHH
Confidence            00  0001112357889999999999999999999988877665555555566666542   33344443332 223333


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ...|+++++...  ++++.+++.|+++++|++..+|+++..|++..
T Consensus       259 l~~g~~~~~~~~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  302 (537)
T PRK13382        259 ASLACTIVTRRR--FDPEATLDLIDRHRATGLAVVPVMFDRIMDLP  302 (537)
T ss_pred             HhcCcEEEECCC--cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCC
Confidence            445778877654  57999999999999999999999999988754

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.1e-32  Score=269.39  Aligned_cols=262  Identities=15%  Similarity=0.146  Sum_probs=182.9

Q ss_pred             hhhhHHHHHHHHHhhCCC-ceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          21 KEKQLHRIFEKNAALSPD-NTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd-~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      +..++.+++.++++++|+ ++|+.+.+       ++++||+||.++++++|++|.+.         +++||+ |+++++|
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~-------~~~~Ty~el~~~~~~lA~~L~~~---------~~~gd~-Val~~~n  264 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDVN-------FTPDSYRKLLKKTLFVGRILEKY---------SVEGER-IGLMLPN  264 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcCC-------CCcccHHHHHHHHHHHHHHHHHh---------cCCCce-EEEEcCC
Confidence            345889999999999998 57876421       12679999999999999999742         467886 9999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh-hhhcccccccchhhhhhhcccCCCCCC
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN-LAYKGRTVLSLPQLRLLSASLSHNNIP  178 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (311)
                      ++||++++||++++|+++||+|+.++++|+++++++++++++|++.+..... .............+. ...........
T Consensus       265 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~  343 (718)
T PRK08043        265 ATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVY-LEDLKDDVTTA  343 (718)
T ss_pred             cHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEE-hhhhhhhcchh
Confidence            9999999999999999999999999999999999999999999975432110 000000000000000 00000000000


Q ss_pred             C-------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308         179 G-------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       179 ~-------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
                      .       ............++|+++++|||||||.||||++||+++..........+.+.++++.   +..++++|.++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~---l~~~Pl~h~~g  420 (718)
T PRK08043        344 DKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRF---MSALPLFHSFG  420 (718)
T ss_pred             HHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeE---EEcCcchhhhh
Confidence            0       0000001112357899999999999999999999999998877665555667777764   34455555555


Q ss_pred             HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       252 ~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      ..+..+.....|+++++.+.. +++..+++.|+++++|+++.+|+++..+.+.
T Consensus       421 ~~~~~~~~l~~G~~vv~~~~~-~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~  472 (718)
T PRK08043        421 LTVGLFTPLLTGAEVFLYPSP-LHYRIVPELVYDRNCTVLFGTSTFLGNYARF  472 (718)
T ss_pred             hHHHHHHHHHcCCEEEEeCCc-ccHHHHHHHHHhcCCeEEEchHHHHHHhhhh
Confidence            434344445567788776532 3577889999999999999999999877654

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-31  Score=256.36  Aligned_cols=264  Identities=23%  Similarity=0.325  Sum_probs=182.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCcc--ccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKD--TLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~--~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      .++.+++.+.++++|+++|+++.+....  ...++.+||+||.++++++|++|.+.        |+++||+ |+++++|+
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~--------g~~~gd~-V~~~~~n~   76 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAA--------GIGRGMR-AVLMVTPS   76 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCc
Confidence            4678889999999999999987543110  01134679999999999999999853        6778886 89999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchh-hhhhhhcccccccchhhhhhhcc-----cCC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA-CENLAYKGRTVLSLPQLRLLSAS-----LSH  174 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~  174 (311)
                      ++|+++++||+++|++++|++|.++.+++.+++++++++++|++.... .........  ............     ...
T Consensus        77 ~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~  154 (552)
T PRK09274         77 LEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGK--PSVRRLVTVGGRLLWGGTTL  154 (552)
T ss_pred             HHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCc--cchhheeccccccccCCccH
Confidence            999999999999999999999999999999999999999999854211 110000000  000000000000     000


Q ss_pred             CCCC-CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         175 NNIP-GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      .... .............++++++|+|||||||.||||++||+++...+......+.+.+.++.   +...++++.    
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~---~~~~pl~~~----  227 (552)
T PRK09274        155 ATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEID---LPTFPLFAL----  227 (552)
T ss_pred             HHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCcee---eeccCHHHh----
Confidence            0000 00000011122356899999999999999999999999998877666666677766653   223333322    


Q ss_pred             HHhhHhhcCCcEEEeCCC-----CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         254 WGPLLSARCGGVLIIPRD-----VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~-----~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      +.    ...|.+++++..     ..+++..+++.|+++++|+++.+|+++.+|++..+..
T Consensus       228 ~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  283 (552)
T PRK09274        228 FG----PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN  283 (552)
T ss_pred             hh----hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc
Confidence            11    123556665431     1357999999999999999999999999999876543

>KOG1179|consensus

Probab=100.00  E-value=5.8e-32  Score=243.37  Aligned_cols=265  Identities=20%  Similarity=0.248  Sum_probs=202.4

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      +..++.++|..+++++|+|+|+++.++.      +.+||+|++++++|+|+.|+..        +.+.|| +||++|+|+
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~--------~l~~GD-~VAL~men~  139 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAE--------GLKAGD-VVALLMENR  139 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHh--------hcccCC-EEEEecCCC
Confidence            3468899999999999999999987752      2679999999999999999865        456677 699999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc----ccc--cch------hhhhh
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR----TVL--SLP------QLRLL  168 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~----~~~--~~~------~~~~~  168 (311)
                      +||+.++||++|+|++..-||+.+..+.+.|.+..++++.+|++.+...........    .+.  .+.      ....+
T Consensus       140 pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L  219 (649)
T KOG1179|consen  140 PEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESL  219 (649)
T ss_pred             hhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHH
Confidence            999999999999999999999999999999999999999999976543222111000    000  000      00000


Q ss_pred             hcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhh
Q psy8308         169 SASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVD  248 (311)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
                      ....+  ..+..+.........+-.++++.+|||||||.||.+++||.-+..........++++++|+   ++.++|++|
T Consensus       220 ~~~l~--~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~Dv---vY~~lPLYH  294 (649)
T KOG1179|consen  220 LAKLS--AAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDV---VYTTLPLYH  294 (649)
T ss_pred             HHhhc--ccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccce---EEEcchhHH
Confidence            00000  0000000001112234568999999999999999999999998877766667788898887   457788888


Q ss_pred             hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      +...+++.......|+++++-++|  +...+|+.-.+|+||+.--+--+-+.|++++..
T Consensus       295 saa~ilGi~~~l~~GaT~VlrkKF--SAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~  351 (649)
T KOG1179|consen  295 SAAGILGIGGCLLHGATVVLRKKF--SASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS  351 (649)
T ss_pred             HHHHHHHHHHHHhcCceEEEeccc--chhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC
Confidence            888888777777779999998765  689999999999999999899999999887653

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-31  Score=260.41  Aligned_cols=265  Identities=22%  Similarity=0.248  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH
Q psy8308          25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI  104 (311)
Q Consensus        25 l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~  104 (311)
                      ..++++++++.+|+++|+++.+....  ..+.+||+||.++++++|++|++.        |+++||+ |+++++|+++++
T Consensus        55 ~~~~l~~~~~~~p~~~A~~~~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~e~~  123 (629)
T PRK10524         55 CHNAVDRHLAKRPEQLALIAVSTETD--EERTYTFRQLHDEVNRMAAMLRSL--------GVQRGDR-VLIYMPMIAEAA  123 (629)
T ss_pred             HHHHHHHhhccCCCCeEEEEEcCCCC--ceEEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHHH
Confidence            36788888888999999987432111  123689999999999999999853        7788886 899999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh--------hhhhh----c---ccccccchhhhhhh
Q psy8308         105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC--------ENLAY----K---GRTVLSLPQLRLLS  169 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~--------~~~~~----~---~~~~~~~~~~~~~~  169 (311)
                      ++++||+++|++++|+++.++++++.+++++++++++|+.+....        .....    .   ...+..++......
T Consensus       124 ~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  203 (629)
T PRK10524        124 FAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM  203 (629)
T ss_pred             HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Confidence            999999999999999999999999999999999999998653210        00000    0   00000000000000


Q ss_pred             cccCCCCCCC-----C-cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceeec
Q psy8308         170 ASLSHNNIPG-----E-SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFKT  242 (311)
Q Consensus       170 ~~~~~~~~~~-----~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (311)
                      ..........     . ...........++++++|+|||||||.||||+++|++++..... ....+.+.+.++.... .
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~  282 (629)
T PRK10524        204 ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCA-S  282 (629)
T ss_pred             CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEc-C
Confidence            0000000000     0 00000011135688999999999999999999999997654333 2233456666654332 2


Q ss_pred             chhhhhh-HHHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         243 ALTFVDA-VSEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       243 ~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      ++.+..+ ...++.++.   .|.++++...  ..+++..+++.|+++++|+++++|++++.|+++
T Consensus       283 ~~~~~~~~~~~~~~~l~---~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  344 (629)
T PRK10524        283 DIGWVVGHSYIVYAPLL---AGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQ  344 (629)
T ss_pred             CCCeeccchHHHHHHHh---CCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhc
Confidence            2222211 122333444   3666666442  245799999999999999999999999988765

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-32  Score=257.05  Aligned_cols=259  Identities=20%  Similarity=0.181  Sum_probs=177.2

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+.+.+.|+++|+++|+++.+..      ..+||+||+++++++|++|.+.        |+++||+ |+++++|+++
T Consensus        14 ~~~~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~--------g~~~g~~-V~i~~~~~~e   78 (540)
T PRK05857         14 STVLDRVFEQARQQPEAIALRRCDGT------SALRYRELVAEVGGLAADLRAQ--------SVSRGSR-VLVISDNGPE   78 (540)
T ss_pred             cchHHHHHHHHhhCCCcEEEeecCCC------ceeeHHHHHHHHHHHHHHHHHh--------CcCCCCE-EEEEcCCCHH
Confidence            36889999999999999999864321      2579999999999999999853        6677885 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccC---CCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLS---HNNIPG  179 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  179 (311)
                      |+++++||+++|++++|+++.++.+++.++++.++++++|+++....... .........+.+ .......   ......
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  156 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASS-AVPEALHSIPVI-AVDIAAVTRESEHSLD  156 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccc-ccccccccccee-Eeeccccccccccccc
Confidence            99999999999999999999999999999999999999999764321100 000000000000 0000000   000000


Q ss_pred             CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh----hcCCCCCCccceeecchhhhhhHHHHHH
Q psy8308         180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA----TFPYSPSERVGAFKTALTFVDAVSEIWG  255 (311)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                       ...........++++++++|||||||.||||++||+++..+......    .+.....++   .+..++++|..+.. .
T Consensus       157 -~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~h~~~l~-~  231 (540)
T PRK05857        157 -AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGET---TYSPLPATHIGGLW-W  231 (540)
T ss_pred             -ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCce---eeecCCccccchHH-H
Confidence             00001112245689999999999999999999999998765432111    122233333   23334444433322 2


Q ss_pred             hhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         256 PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .+.....|+.+++..   .++..+++.|+++++|+++.+|+++..|+.+.+
T Consensus       232 ~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~  279 (540)
T PRK05857        232 ILTCLMHGGLCVTGG---ENTTSLLEILTTNAVATTCLVPTLLSKLVSELK  279 (540)
T ss_pred             HHHHhhcceeEEecC---CChhHHHHHHHhcCcceEEeChHHHHHHHhccc
Confidence            233344566766643   368899999999999999999999999987654

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-31  Score=250.94  Aligned_cols=247  Identities=19%  Similarity=0.244  Sum_probs=181.4

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.+.|.++++++||++|+.+.+.        .+||.||.++++++|++|.+.        + .+||+ |+|+++|+++|
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~--------~-~~~~~-v~i~~~~~~~~   63 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEK--------E-SKNKT-IAILLENRIEF   63 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHh--------C-CCCCE-EEEEcCCCHHH
Confidence            577889999999999999987542        579999999999999999754        2 35675 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML  183 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (311)
                      +++++||+++|++++|+++.++++++.++++.+++++++++........ .....+...+.....   ..     ... .
T Consensus        64 ~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~---~~-----~~~-~  133 (487)
T PRK07638         64 LQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLP-DEEGRVIEIDEWKRM---IE-----KYL-P  133 (487)
T ss_pred             HHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchh-hccceEEEehhhhhh---hh-----hcc-c
Confidence            9999999999999999999999999999999999999999764321111 001111111111000   00     000 0


Q ss_pred             CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308         184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG  263 (311)
Q Consensus       184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (311)
                      .........+++++|+|||||||.||||+++|+++..........+.+.+.++.... .++.+.+.   ++..+.....|
T Consensus       134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~-~~l~~~~~---l~~~~~~l~~g  209 (487)
T PRK07638        134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIA-GTLVHSLF---LYGAISTLYVG  209 (487)
T ss_pred             cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEe-ecchHHHH---HHHHHHHHccC
Confidence            000111234678999999999999999999999998777665556667776754322 23333322   23344455568


Q ss_pred             cEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         264 GVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       264 ~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      +++++.+.  ++|..+++.|+++++|++..+|+++..|..+
T Consensus       210 ~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  248 (487)
T PRK07638        210 QTVHLMRK--FIPNQVLDKLETENISVMYTVPTMLESLYKE  248 (487)
T ss_pred             cEEEEcCC--CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC
Confidence            88888764  4799999999999999999999999998875

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.2e-31  Score=255.84  Aligned_cols=264  Identities=19%  Similarity=0.227  Sum_probs=185.4

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      +..++.+++.++++++|+++|+++.+.+      +.+||+||.++++++|+.|.+.        |+++||+ |+++++|+
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~--------g~~~gd~-V~i~~~~~   85 (537)
T PLN02246         21 NHLPLHDYCFERLSEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKL--------GIRQGDV-VMLLLPNC   85 (537)
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCC
Confidence            3457999999999999999999865321      2579999999999999999853        6778886 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhhhhhhcccCCCCC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQLRLLSASLSHNNI  177 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  177 (311)
                      ++|+++++|++++|++++|++|.++.+++.++++.++++++|++...........   ...+...+...  .........
T Consensus        86 ~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~  163 (537)
T PLN02246         86 PEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPP--EGCLHFSEL  163 (537)
T ss_pred             hHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCC--CCceeHHHH
Confidence            9999999999999999999999999999999999999999999765432211110   00010010000  000000000


Q ss_pred             CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh----hcCCCCCCccceeecchhhhhhHHHH
Q psy8308         178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA----TFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      ..............++++++++|||||||.||||++||+++.........    .+.+.++++..   ...+++|..+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l---~~~pl~~~~~~~  240 (537)
T PLN02246        164 TQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL---CVLPMFHIYSLN  240 (537)
T ss_pred             hcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEE---EeechHHHHHHH
Confidence            00000001111235789999999999999999999999999876544322    34556666543   334444444332


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ...+.....|+++++...  +++..+++.|+++++|++..+|+++..|++..+
T Consensus       241 ~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  291 (537)
T PLN02246        241 SVLLCGLRVGAAILIMPK--FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV  291 (537)
T ss_pred             HHHHHHHhcCCEEEEeCC--CCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc
Confidence            223333445888888764  479999999999999999999999999987554

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.1e-31  Score=256.42  Aligned_cols=261  Identities=17%  Similarity=0.201  Sum_probs=175.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .+..+++.+.++.+|+++|+.+.+.        ++||+||.++++++|++|.+.        |+++||+ |+|+++|+++
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~--------Gl~~gd~-Vai~~~n~~e   76 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISL--------NITKNDV-VSVLAPNTPA   76 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcHH
Confidence            4678889999999999999987542        679999999999999999864        6777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc----------cccccchhhhhhhcc-
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG----------RTVLSLPQLRLLSAS-  171 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-  171 (311)
                      |++++||++++|++++|+||.++.+++.++++.++++++|++.+..........          ..+..++........ 
T Consensus        77 ~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (579)
T PLN03102         77 MYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPS  156 (579)
T ss_pred             HHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCc
Confidence            999999999999999999999999999999999999999997543221111000          000000000000000 


Q ss_pred             ---cCCC----CCCCCccc-CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecc
Q psy8308         172 ---LSHN----NIPGESML-HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTA  243 (311)
Q Consensus       172 ---~~~~----~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (311)
                         ....    ........ ........++++++|+|||||||.||||++||+++..........+.....+.   ++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~---~l~~  233 (579)
T PLN03102        157 SEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPV---YLWT  233 (579)
T ss_pred             ccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCe---EEec
Confidence               0000    00000000 00001134679999999999999999999999997544333222233333333   2233


Q ss_pred             hhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         244 LTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .+++|..+..+ .+.....|+.+++...  +++..+++.|+++++|++.++|+++.+|++..+
T Consensus       234 ~pl~h~~g~~~-~~~~~~~g~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  293 (579)
T PLN03102        234 LPMFHCNGWTF-TWGTAARGGTSVCMRH--VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS  293 (579)
T ss_pred             CChhhhcchhH-HHHHHHhcCcEEeecc--CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcc
Confidence            44444333221 2222334566666553  368899999999999999999999999987643

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.1e-31  Score=253.74  Aligned_cols=269  Identities=20%  Similarity=0.220  Sum_probs=191.1

Q ss_pred             hhhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEE
Q psy8308          17 EKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS   96 (311)
Q Consensus        17 ~~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~   96 (311)
                      ..+|...++.++++++++++|+++|+++.+.        ++||+||.++++++|..|.+.        |+++||+ |+++
T Consensus        17 ~~~~~~~~l~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~--------g~~~g~~-V~i~   79 (527)
T TIGR02275        17 KGYWQDKPLTDILRDQAARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKL--------GIGQGDT-AVVQ   79 (527)
T ss_pred             cCcccCCcHHHHHHHHHHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEE
Confidence            4577888999999999999999999987542        679999999999999999853        6677785 9999


Q ss_pred             eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh----hhhhcccccccchhhhhhhcc-
Q psy8308          97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE----NLAYKGRTVLSLPQLRLLSAS-  171 (311)
Q Consensus        97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-  171 (311)
                      ++|+++|+++++|++++|++++|+++..+.+++.++++.+++++++++......    ..................... 
T Consensus        80 ~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (527)
T TIGR02275        80 LPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTR  159 (527)
T ss_pred             CCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCC
Confidence            999999999999999999999999999999999999999999999997542110    000000000000000000000 


Q ss_pred             --cCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhh
Q psy8308         172 --LSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA  249 (311)
Q Consensus       172 --~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                        ....................++++++++|||||||.||||++||+++..++......+.+.+.++.   +..++++|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~---l~~~P~~h~  236 (527)
T TIGR02275       160 VEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRY---LCALPAAHN  236 (527)
T ss_pred             CcchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEE---EECCChHhh
Confidence              000000000000011123457899999999999999999999999998777665555666666654   334555554


Q ss_pred             HHHHH-HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         250 VSEIW-GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       250 ~~~~~-~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      ++... ..+.....|+++++...  +++..+++.|+++++|++..+|+++..|++..+.
T Consensus       237 ~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~  293 (527)
T TIGR02275       237 YPLSSPGALGVFYAGGCVVLAPD--PSPTDCFPLIERHKVTVTALVPPAVALWMQAASK  293 (527)
T ss_pred             hhhhHHHHHHHHhcCCeEEECCC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc
Confidence            44322 12333445777777664  4799999999999999999999999988876543

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=8.2e-32  Score=300.75  Aligned_cols=251  Identities=29%  Similarity=0.475  Sum_probs=192.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++||++|+.+.+.        ++||+||+++++++|+.|++        .|+++||+ |+++++|+++
T Consensus      3095 ~~~~~l~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~--------~gv~~g~~-V~l~~~~s~~ 3157 (3956)
T PRK12467       3095 RLVHQLIEAQVARTPEAPALVFGDQ--------QLSYAELNRRANRLAHRLIA--------IGVGPDVL-VGVAVERSVE 3157 (3956)
T ss_pred             ccHHHHHHHHHHhCCCcceEeeCCc--------ccCHHHHHHHHHHHHHHHHH--------cCCCCCCe-EEEEeCCCHH
Confidence            5899999999999999999998653        57999999999999999975        37777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      +++++||++++|+++||++|.++.+++.++++++++++++++.................++...       ....    .
T Consensus      3158 ~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~ 3226 (3956)
T PRK12467       3158 MIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLD-------LNGY----S 3226 (3956)
T ss_pred             HHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchh-------hccc----C
Confidence            9999999999999999999999999999999999999999975432211100011111111000       0000    0


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                      .........++++++|+|||||||.||||+++|+++.+.+......+.+++.++...+ .++.|..+...++.++.   .
T Consensus      3227 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~-~~~~fd~~~~~~~~~L~---~ 3302 (3956)
T PRK12467       3227 ENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLF-MSFSFDGAQERFLWTLI---C 3302 (3956)
T ss_pred             CCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEe-cCccHhHHHHHHHHHHh---C
Confidence            0111123467899999999999999999999999999988877777888888876443 44555544444444444   4


Q ss_pred             CcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       263 g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |++++++.+..++|..+++.|++++||++.++|++++.|++..
T Consensus      3303 G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467       3303 GGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred             CCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence            6777776654568999999999999999999999999998754

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-31  Score=251.16  Aligned_cols=252  Identities=23%  Similarity=0.310  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      .+.+.+.++|+.+||++|+.+.+.        .+||+||.++++++|++|++.       .|+.+||+ |+++++|+++|
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~-------~g~~~~~~-V~i~~~~~~~~   66 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYE-------LNVKKGER-IAILSQNSLEY   66 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHh-------cCCCCCCE-EEEECCCCHHH
Confidence            478899999999999999997532        679999999999999999742       25667775 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc----ccccchhhhhhhcccCCCCCCC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR----TVLSLPQLRLLSASLSHNNIPG  179 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  179 (311)
                      +++++|++++|++++|+++.++++++.++++.+++++++++.............    ....+......         ..
T Consensus        67 ~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  137 (496)
T PRK06839         67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEI---------ED  137 (496)
T ss_pred             HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhh---------hc
Confidence            999999999999999999999999999999999999999975432211111000    00001100000         00


Q ss_pred             CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                      ..  ........++++++|+|||||||.||||+++|+++..+.......+.+.+.++...   .++++|..+..+..+..
T Consensus       138 ~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~g~~~~~~~~  212 (496)
T PRK06839        138 RK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIV---LLPLFHIGGIGLFAFPT  212 (496)
T ss_pred             cC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEE---eeCCcchhhHHHHHHHH
Confidence            00  00111234688999999999999999999999998766554445556666665433   23333333322333334


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      ...|++++++..  ++++.+++.++++++|++..+|++++.|+...+.
T Consensus       213 l~~g~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  258 (496)
T PRK06839        213 LFAGGVIIVPRK--FEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF  258 (496)
T ss_pred             HhcCcEEEEccC--CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc
Confidence            445778888764  4799999999999999999999999999886543

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.4e-31  Score=272.79  Aligned_cols=258  Identities=17%  Similarity=0.178  Sum_probs=180.8

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+++.+.++++|+++|+......   ..|+.+||+|+.++++++|++|.+.        |+++||+ |+|+++|++|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~---g~~~~lTY~El~~~V~~lAa~L~~l--------GV~~GDr-VaIls~N~~E  494 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSES---GESEWLTYGTVDARARELGSGLLAL--------GVRPGDV-IGVDCEASRN  494 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccC---CCceEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHH
Confidence            58999999999999999998642110   1123689999999999999999864        7888996 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc---c----C--
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS---L----S--  173 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~--  173 (311)
                      |+++++||+++|+++||+++  +.+++.|++++++++++|++.............   .++.++.....   .    .  
T Consensus       495 wvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~---~Lr~IIv~d~~~~~~~~~~~~~  569 (1452)
T PTZ00297        495 IVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSR---KLETVVYTHSFYDEDDHAVARD  569 (1452)
T ss_pred             HHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhccc---CCcEEEEECCCccccccccccc
Confidence            99999999999999999986  467999999999999999976543322211110   11111111000   0    0  


Q ss_pred             -------CCCC--CCCcccCCCCCCCCCCCeEEEEE---ccCCCCCCcceEecchhHHHHHHHHHhhc---CCCCCCccc
Q psy8308         174 -------HNNI--PGESMLHSDNNNEQSNDIAIVLY---TSGSTGIPKGVRLPHEVILNRLAWQWATF---PYSPSERVG  238 (311)
Q Consensus       174 -------~~~~--~~~~~~~~~~~~~~~~~~a~i~~---TSGTTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~~  238 (311)
                             ..+.  .+...........+++|++.|+|   ||||||.||||++||+|++.++.......   ...+.++. 
T Consensus       570 ~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~-  648 (1452)
T PTZ00297        570 LNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLM-  648 (1452)
T ss_pred             CCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEE-
Confidence                   0000  00000000112236789999996   99999999999999999998876654322   23445553 


Q ss_pred             eeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         239 AFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                        ++.+|+.|.+...+ .+.....|+.+..     +++..+++.|+++|+|+++.||++|.++.+...
T Consensus       649 --Ls~LPLaHI~er~~-~~~~l~~G~~I~~-----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~  708 (1452)
T PTZ00297        649 --VHFTPFAMLFNRVF-VLGLFAHGSAVAT-----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLS  708 (1452)
T ss_pred             --EEechHHHHHHHHH-HHHHHHcCCEEEe-----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHH
Confidence              44466666655322 2333445777652     478999999999999999999999999877654

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=3.6e-31  Score=251.39  Aligned_cols=267  Identities=19%  Similarity=0.257  Sum_probs=183.7

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      .++|.++|++.++++|+++|+++.+...   .++.+||+||.++++++|+.|.+.        |+.+||+ |+++++|++
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~---~~~~~ty~~l~~~v~~la~~L~~~--------g~~~~~~-v~i~~~n~~   73 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFESSGG---VVRRYSYLELNEEINRTANLFYSL--------GIRKGDK-VALHLDNCP   73 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcccCCC---ccceeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCH
Confidence            4579999999999999999998754221   134689999999999999999753        6677785 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhc-------ccCC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSA-------SLSH  174 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  174 (311)
                      +|+++++|++++|++++|++|.++.+++.+++++++++++|++..................+.+.....       ....
T Consensus        74 ~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (517)
T PRK08008         74 EFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSF  153 (517)
T ss_pred             HHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCH
Confidence            999999999999999999999999999999999999999999765432111100000000000000000       0000


Q ss_pred             CCCC-CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         175 NNIP-GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      .... .............++++++|+|||||||.||||++||+|+............+.+.++.   +..+++.|.....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~  230 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVY---LTVMPAFHIDCQC  230 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeE---EEecCcHHHHHHH
Confidence            0000 00000001112346899999999999999999999999987543222222234555553   2334444433333


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +..+.....|+++++...  +++..+++.|+++++|++..+|++++.|+...
T Consensus       231 ~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  280 (517)
T PRK08008        231 TAAMAAFSAGATFVLLEK--YSARAFWGQVCKYRATITECIPMMIRTLMVQP  280 (517)
T ss_pred             HHHHHHHhcCcEEEEccc--cCHHHHHHHHHHcCCcEEechHHHHHHHHhCC
Confidence            333444445788888764  47999999999999999999999999887643

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-31  Score=261.60  Aligned_cols=253  Identities=19%  Similarity=0.178  Sum_probs=169.9

Q ss_pred             hCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhC
Q psy8308          35 LSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAG  114 (311)
Q Consensus        35 ~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G  114 (311)
                      .+|+++|+++.+.+..   .+++||+||.++++++|++|++.        |+++||+ |+++++|++++++++|||+++|
T Consensus        96 ~~~~~~Al~~~~~~~~---~~~~Ty~eL~~~v~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~e~v~~~lA~~~~G  163 (655)
T PRK03584         96 RRDDRPAIIFRGEDGP---RRELSWAELRRQVAALAAALRAL--------GVGPGDR-VAAYLPNIPETVVAMLATASLG  163 (655)
T ss_pred             CCCCCeEEEEECCCCc---eEEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHHHHHHHHHHHcC
Confidence            4799999998653221   24789999999999999999853        7788886 9999999999999999999999


Q ss_pred             CeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhcccccccchhhhhhhcc------------cCC
Q psy8308         115 AAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYKGRTVLSLPQLRLLSAS------------LSH  174 (311)
Q Consensus       115 ~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------------~~~  174 (311)
                      ++++|+++.++++++.+++++++|+++|+++.....        ...........+.....+...            ...
T Consensus       164 av~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  243 (655)
T PRK03584        164 AIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLW  243 (655)
T ss_pred             cEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccH
Confidence            999999999999999999999999999997642110        000000000000000000000            000


Q ss_pred             CCC-CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHH-HHHHHhhcCCCCCCccceeecchhhhhhHHH
Q psy8308         175 NNI-PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNR-LAWQWATFPYSPSERVGAFKTALTFVDAVSE  252 (311)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
                      .+. ...............+++++|+|||||||.||||++||++++.+ .......+.+.+.++...+ .++.+..+ ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~-~~  321 (655)
T PRK03584        244 EDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWY-TTCGWMMW-NW  321 (655)
T ss_pred             HHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEc-CCchHHhH-HH
Confidence            000 00000001111235689999999999999999999999987643 3333445567777765332 22222211 11


Q ss_pred             HHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         253 IWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       253 ~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      ++++   +..|+++++...  ..+++..+++.|+++++|++.++|+++++|++.
T Consensus       322 ~~~~---L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  372 (655)
T PRK03584        322 LVSG---LLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA  372 (655)
T ss_pred             HHHH---HHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhc
Confidence            2223   334777777542  245899999999999999999999999988764

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-31  Score=254.50  Aligned_cols=264  Identities=17%  Similarity=0.223  Sum_probs=179.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.+.++.+|+++|+++.+.        .+||+||.++++++|++|.+.       .|+.+||+ |+++++|+++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~-------~gi~~gd~-Vai~~~n~~~   87 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQH-------TDLKPGDR-IAVQLPNVLQ   87 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHh-------cCCCCCCE-EEEECCCCHH
Confidence            4799999999999999999986532        579999999999999999742       36778886 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccch----------hhhh--
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLP----------QLRL--  167 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~----------~~~~--  167 (311)
                      |++++||++++|++++|++|.++.+++.+++++++++++|++...........   ........          ....  
T Consensus        88 ~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
T PRK05677         88 YPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINA  167 (562)
T ss_pred             HHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhccc
Confidence            99999999999999999999999999999999999999998654321111000   00000000          0000  


Q ss_pred             ----hhcccCCCCCCC----------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC--C
Q psy8308         168 ----LSASLSHNNIPG----------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP--Y  231 (311)
Q Consensus       168 ----~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~  231 (311)
                          ..........+.          ............++++++++|||||||.||||+++|+++..+.......+.  .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~  247 (562)
T PRK05677        168 VVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNL  247 (562)
T ss_pred             chhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCC
Confidence                000000000000          000000111235689999999999999999999999998776544333322  2


Q ss_pred             CCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         232 SPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ...+.  .++..++++|..+..+..+.....|+..++... ..++..+++.|+++++|.++.+|+++..|+...
T Consensus       248 ~~~~~--~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  318 (562)
T PRK05677        248 NEGCE--ILIAPLPLYHIYAFTFHCMAMMLIGNHNILISN-PRDLPAMVKELGKWKFSGFVGLNTLFVALCNNE  318 (562)
T ss_pred             CCCcc--EEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecC-cccHHHHHHHHHHcCceEEecHHHHHHHHHhCc
Confidence            22222  234455666655543333333334555544332 247899999999999999999999999888754

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.2e-31  Score=277.63  Aligned_cols=251  Identities=33%  Similarity=0.465  Sum_probs=190.3

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|.++++++|+++|+.+.+.        .+||+||.++++++|+.|.+        .|+++||+ |+++++|++
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~--------~g~~~g~~-V~l~~~~~~  519 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRE--------RGVKPGDS-VAVALPRSV  519 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEEeCCCH
Confidence            35789999999999999999987643        57999999999999999975        36777885 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCc
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      +++++++|++++|+++||++|.++.+++.++++++++++++++..........     ..+... ......   ....  
T Consensus       520 ~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~~~-~~~~~~---~~~~--  588 (1296)
T PRK10252        520 FLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDLTSL-CYNAPL---APQG--  588 (1296)
T ss_pred             HHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCceee-eccccc---cccc--
Confidence            99999999999999999999999999999999999999999976533211100     000000 000000   0000  


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                        ........++++++|+|||||||.||||+++|+++.+.+.+....+.+.+.++... ..++.+..++..++.++.   
T Consensus       589 --~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~-~~~~~fd~~~~~~~~~l~---  662 (1296)
T PRK10252        589 --AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQ-KTPCSFDVSVWEFFWPFI---  662 (1296)
T ss_pred             --CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEE-eCCcchhhhHHHHHHHHh---
Confidence              00111235789999999999999999999999999988887777788888776543 344445444444454554   


Q ss_pred             CCcEEEeCC-CCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         262 CGGVLIIPR-DVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       262 ~g~~~v~~~-~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .|+++++.. ....+|..+++.|++++||++.++|+++..++++.+
T Consensus       663 ~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~  708 (1296)
T PRK10252        663 AGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLT  708 (1296)
T ss_pred             CCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhc
Confidence            466666643 345689999999999999999999999999987643

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.2e-31  Score=278.96  Aligned_cols=269  Identities=24%  Similarity=0.321  Sum_probs=188.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCc-cccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDK-DTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~-~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      .++.++|+++++.+||++|+++..... .....+++||+||.++++++|++|.+.        |+++||+ |+|+++|++
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--------gv~~g~~-V~i~~~~~~  306 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKT--------GIKRGDV-VMIYAYRGV  306 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEecCCH
Confidence            478999999999999999998642110 001124789999999999999999853        6788886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh--hhhhh-ccccc---ccchhhhhhhc-cc--
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC--ENLAY-KGRTV---LSLPQLRLLSA-SL--  172 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~-~~--  172 (311)
                      +|+++++||+++|+++||++|.++++++.+++++++++++++......  ..... .....   ..++.+..... ..  
T Consensus       307 ~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (1389)
T TIGR03443       307 DLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG  386 (1389)
T ss_pred             HHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc
Confidence            999999999999999999999999999999999999999998643210  00000 00000   00000000000 00  


Q ss_pred             ---CCC--CCCC-Ccc--cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecch
Q psy8308         173 ---SHN--NIPG-ESM--LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL  244 (311)
Q Consensus       173 ---~~~--~~~~-~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (311)
                         ...  .... ...  .........++|+++|+|||||||.||||+++|+++...+.+....+.+.+.+++.. ..++
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~-~~~~  465 (1389)
T TIGR03443       387 GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTM-LSGI  465 (1389)
T ss_pred             cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEE-ecCc
Confidence               000  0000 000  000011235789999999999999999999999999988777777777877776543 3445


Q ss_pred             hhhhhHHHHHHhhHhhcCCcEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         245 TFVDAVSEIWGPLLSARCGGVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      .|..+...++.+++   .|++++++.. ...+|..+++.|++++||+++++|+++..|...
T Consensus       466 ~~d~~~~~i~~~L~---~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~  523 (1389)
T TIGR03443       466 AHDPIQRDMFTPLF---LGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQ  523 (1389)
T ss_pred             eecchHHHHHHHHh---CCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence            55544444555544   4677777653 335788999999999999999999999888653

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3.7e-31  Score=252.86  Aligned_cols=260  Identities=22%  Similarity=0.256  Sum_probs=185.5

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++++++++.+||++|+.+.+.        .+||+||.++++++|..|.+.        |+++|++ |+++++|++
T Consensus        20 ~~~l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~--------gi~~g~~-V~v~~~n~~   82 (542)
T PRK06155         20 ERTLPAMLARQAERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAA--------GVKRGDR-VALMCGNRI   82 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCh
Confidence            45799999999999999999987543        579999999999999999853        6677785 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc--------cC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS--------LS  173 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  173 (311)
                      +|+++++|++++|++++|+++.++.+++.++++.+++++++++............ ..............        ..
T Consensus        83 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  161 (542)
T PRK06155         83 EFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADP-GDLPLPAVWLLDAPASVSVPAGWS  161 (542)
T ss_pred             HHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcc-cccCcceEEEecCccccccccccc
Confidence            9999999999999999999999999999999999999999997654322111110 00000000000000        00


Q ss_pred             CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      ........ .........++++++|+|||||||.||||+++|+++..........+.+.+.++..   ...+++|..+..
T Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l---~~~pl~~~~~~~  237 (542)
T PRK06155        162 TAPLPPLD-APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLY---TTLPLFHTNALN  237 (542)
T ss_pred             hhhhcccC-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEE---EecCHHHHHHHH
Confidence            00000000 00111223568999999999999999999999999987665555556677666543   334444433321


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                       ..+.....|+++++...  +++..+++.|+++++|++.++|+++..|++..+
T Consensus       238 -~~~~~l~~G~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~  287 (542)
T PRK06155        238 -AFFQALLAGATYVLEPR--FSASGFWPAVRRHGATVTYLLGAMVSILLSQPA  287 (542)
T ss_pred             -HHHHHHHcCceEEeeCC--CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcC
Confidence             12233334677777664  479999999999999999999999998887654

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-31  Score=257.07  Aligned_cols=261  Identities=23%  Similarity=0.237  Sum_probs=179.9

Q ss_pred             HHHHHHHHHh-hCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          25 LHRIFEKNAA-LSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        25 l~~~~~~~a~-~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      +.+++.+++. ..|+++|+.+.+...    .+++||+||.++++++|.+|.+.        |+++||+ |+++++|+++|
T Consensus        45 ~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~Ty~el~~~v~~~A~~L~~~--------gv~~gd~-V~i~~~n~~~~  111 (570)
T PRK04319         45 AYEAIDRHADGGRKDKVALRYLDASR----KEKYTYKELKELSNKFANVLKEL--------GVEKGDR-VFIFMPRIPEL  111 (570)
T ss_pred             HHHHHHHhhccCCCCceEEEEECCCC----ceeecHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCCHHH
Confidence            4577888876 579999998754321    23689999999999999999864        6777886 89999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhccc-------CCCC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASL-------SHNN  176 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  176 (311)
                      +++++|++++|++++|+++.++++++.++++++++++++++..........   ...............       ....
T Consensus       112 ~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (570)
T PRK04319        112 YFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVEEGPGTLDFNA  188 (570)
T ss_pred             HHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcCCCcCccCHHH
Confidence            999999999999999999999999999999999999999976532211100   000000000000000       0000


Q ss_pred             CCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHh
Q psy8308         177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGP  256 (311)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
                      ...............++++++++|||||||.||||+++|+++..+.......+.+.+.++...   ..+..+..+..+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~g~~~~~  265 (570)
T PRK04319        189 LMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWC---TADPGWVTGTSYGI  265 (570)
T ss_pred             HHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEe---cCChHHhhCchHHH
Confidence            000000001112235688999999999999999999999999877655555566666665322   22222222222222


Q ss_pred             hHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         257 LLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       257 ~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +.....|+++++... .+++..+++.|+++++|+++.+|+++++|++..
T Consensus       266 ~~~l~~G~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  313 (570)
T PRK04319        266 FAPWLNGATNVIDGG-RFSPERWYRILEDYKVTVWYTAPTAIRMLMGAG  313 (570)
T ss_pred             HHHHhcCceEEEECC-CCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcC
Confidence            333344667666542 358999999999999999999999999998753

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=7e-31  Score=250.70  Aligned_cols=273  Identities=17%  Similarity=0.236  Sum_probs=190.5

Q ss_pred             hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308          18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL   97 (311)
Q Consensus        18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~   97 (311)
                      ..|...++.+.+.++++.+|+++|++..+....  .++.+||+||.++++++|.+|++.        |+.+||+ |++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~--~~~~~Ty~eL~~~~~~~a~~L~~~--------g~~~g~~-V~i~~   85 (538)
T TIGR03208        17 GLWRDRTINDHFDAAVANCPDKPALTAYRDGHG--AVRRFSYRELDCRVDRIAVGLARL--------GVGRGDV-VSFQL   85 (538)
T ss_pred             CccccCcHHHHHHHHHHHCCCceEEEeecccCC--CcceecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEC
Confidence            355567899999999999999999886321110  123679999999999999999853        6667785 99999


Q ss_pred             CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh----hhhhhcccccccchhhhhhhc---
Q psy8308          98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC----ENLAYKGRTVLSLPQLRLLSA---  170 (311)
Q Consensus        98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---  170 (311)
                      +|+++|+++++||+++|+++||++|.++.+++.++++.++++++++++....    ...............+.....   
T Consensus        86 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (538)
T TIGR03208        86 PNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD  165 (538)
T ss_pred             CCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999764310    000000000000000000000   


Q ss_pred             -----ccCCCCCCCCcc--cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecc
Q psy8308         171 -----SLSHNNIPGESM--LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTA  243 (311)
Q Consensus       171 -----~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (311)
                           ............  .........++++++++|||||||.||||+++|+++...+......+.+...++..   ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l---~~  242 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVIL---MA  242 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEE---Ee
Confidence                 000000000000  00011124578999999999999999999999999988776666666666666543   33


Q ss_pred             hhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         244 LTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .++.|..+.++..+.....|+.+++...  +++..+++.|+++++|++..+|+++..|+.+.+
T Consensus       243 ~pl~h~~g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~  303 (538)
T TIGR03208       243 SPMAHQTGFMYGLMMPLILNATAVLQDI--WNPARAAELIRETGVTFTMASTPFLTDLCRAVK  303 (538)
T ss_pred             CCchhHHHHHHHHHHHHHcCCEEEecCc--cCHHHHHHHHHHhCCeEEecCHHHHHHHHhchh
Confidence            4444444444444444555777777653  479999999999999999999999998887654

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.7e-31  Score=260.16  Aligned_cols=252  Identities=15%  Similarity=0.138  Sum_probs=166.2

Q ss_pred             hCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhC
Q psy8308          35 LSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAG  114 (311)
Q Consensus        35 ~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G  114 (311)
                      +.++++|+++.+.+..   .+++||+||.++|+++|++|++        .|+++||+ |+++++|++|+++++|||+++|
T Consensus        96 ~~~~~~a~~~~~~~~~---~~~~Ty~eL~~~v~~lA~~L~~--------~Gv~~Gdr-V~i~~~n~~e~~~~~lA~~~~G  163 (652)
T TIGR01217        96 AAGTEPALLYVDETHE---PAPVTWAELRRQVASLAAALRA--------LGVRPGDR-VSGYLPNIPQAVVAMLATASVG  163 (652)
T ss_pred             cCCCCeEEEEECCCCC---eeEEeHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEEcCCCHHHHHHHHHHHHhC
Confidence            3578999887643221   2378999999999999999975        37888996 9999999999999999999999


Q ss_pred             CeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh--------hhhhhcccccccchhhhhhhccc----CC----CCC-
Q psy8308         115 AAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC--------ENLAYKGRTVLSLPQLRLLSASL----SH----NNI-  177 (311)
Q Consensus       115 ~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~-  177 (311)
                      ++++|+++.++++++.+++++++|+++|+++....        ............+.....+....    ..    ... 
T Consensus       164 av~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  243 (652)
T TIGR01217       164 AIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALD  243 (652)
T ss_pred             eEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCccc
Confidence            99999999999999999999999999999764310        00000000000000000000000    00    000 


Q ss_pred             ----CCC-cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHH-HHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308         178 ----PGE-SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNR-LAWQWATFPYSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       178 ----~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
                          ... ............+|+++|+|||||||.||||+++|++++.. .......+.+.+.++...+ .++.+..+ .
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~-~  321 (652)
T TIGR01217       244 LEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYY-TTTGWMMW-N  321 (652)
T ss_pred             HHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEe-CCcchhhh-H
Confidence                000 00000111234589999999999999999999999987643 3333334567777765433 22332211 1


Q ss_pred             HHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHH
Q psy8308         252 EIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM  303 (311)
Q Consensus       252 ~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~  303 (311)
                      .++.   .+..|+++++...  ..+++..+++.|++++||++..+|++++.|.+
T Consensus       322 ~~~~---~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~  372 (652)
T TIGR01217       322 WLVS---GLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRK  372 (652)
T ss_pred             HHHH---HHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHh
Confidence            1222   3345777777542  22478999999999999999888888876654

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-31  Score=260.30  Aligned_cols=249  Identities=18%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             hhHHHHHHHHHhh--CCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          23 KQLHRIFEKNAAL--SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        23 ~~l~~~~~~~a~~--~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      .++.+++.+++..  +||++|+.+..         .+||+||.++++++|++|.+.        |+++||+ |+|+++|+
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~~---------~~Ty~eL~~~~~~lA~~L~~~--------g~~~g~~-V~i~~~~~   65 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAAD---------VVTHGQIHDGAARLGEVLRNR--------GLSSGDR-VLLCLPDS   65 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEecC---------ceeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCC
Confidence            4788999998876  79999997531         469999999999999999853        6778886 89999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGE  180 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (311)
                      ++|+++++||+++|++++|++|.++.+++.+++++++++++|++....... .  ..........  ....   ....  
T Consensus        66 ~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~-~--~~~~~~~~~~--~~~~---~~~~--  135 (705)
T PRK06060         66 PDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRF-Q--PSRVAEAAEL--MSEA---ARVA--  135 (705)
T ss_pred             HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhh-c--ccccchhhhh--hhhc---cccC--
Confidence            999999999999999999999999999999999999999999965432111 0  0001000000  0000   0000  


Q ss_pred             cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHH-hhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         181 SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQW-ATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       181 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                         ........++++++++|||||||.||||+++|+++..+..... ..+.+.+.++... ..++.+..++  .+..+..
T Consensus       136 ---~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~--~~~~~~~  209 (705)
T PRK06060        136 ---PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLC-SARMYFAYGL--GNSVWFP  209 (705)
T ss_pred             ---CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEE-eccchhhcch--hHHHHHH
Confidence               0001123468899999999999999999999999987665443 3455666665422 2222322222  1222333


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ...|+++++... .+++..+++.++++++|+++.+|+++.+|+++.+
T Consensus       210 l~~G~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  255 (705)
T PRK06060        210 LATGGSAVINSA-PVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS  255 (705)
T ss_pred             HhcCCEEEEeCC-CCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc
Confidence            345777777653 3478889999999999999999999999987643

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-31  Score=300.32  Aligned_cols=253  Identities=28%  Similarity=0.425  Sum_probs=193.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++|+++|+.+.+.        ++||+||+++++++|+.|++        .|+++||+ |+++++|+++
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~~~--------~lTy~eL~~~a~~lA~~L~~--------~gv~~g~~-V~l~~~~s~~ 2065 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFGDQ--------HLSYAELDSRANRLAHRLRA--------RGVGPEVR-VAIAAERSFE 2065 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcCCC--------eEcHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEEeCCCHH
Confidence            4789999999999999999987553        57999999999999999985        37788885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      ++++++|++++|+++||++|.++.+++.++++++++++++++.................++...    .  ......   
T Consensus      2066 ~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~--- 2136 (5163)
T PRK12316       2066 LVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRDA----E--WADYPD--- 2136 (5163)
T ss_pred             HHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccchh----h--hhccCc---
Confidence            9999999999999999999999999999999999999999975432211100000000010000    0  000000   


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                       ........++++++|+|||||||.||||+++|+++.+.+......+.+++.++...+ .++.|..++..++.++.   .
T Consensus      2137 -~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~-~~~~fd~~~~~~~~~L~---~ 2211 (5163)
T PRK12316       2137 -TAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQF-MSFSFDGAHEQWFHPLL---N 2211 (5163)
T ss_pred             -cCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEe-cCchHHHHHHHHHHHHh---C
Confidence             011123468899999999999999999999999999888777777888888876543 34555544444444444   4


Q ss_pred             CcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       263 g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      |++++++.+..+++..+++.|++++||++.++|++++.|....+
T Consensus      2212 G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 2255 (5163)
T PRK12316       2212 GARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAE 2255 (5163)
T ss_pred             CCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhh
Confidence            77777776555689999999999999999999999999987654

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.7e-31  Score=251.41  Aligned_cols=255  Identities=16%  Similarity=0.210  Sum_probs=179.6

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCCCcEEEEEeCCCh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNEN-QDGDHIVAVSLAPSS  101 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~-~~gd~~Vai~~~n~~  101 (311)
                      .++.+++..++  .|+++|+++.+.        .+||+||.++++++|.+|.+.        |+ .+||+ |+++++|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~--------g~~~~~~~-V~i~~~n~~   63 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYGDR--------TWTWREVLAEAAARAAALIAL--------ADPDRPLH-VGVLLGNTP   63 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHh--------cCCCCCCE-EEEECCCCc
Confidence            36778887765  689999987542        579999999999999999864        55 56775 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCc
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      +|+++++|++++|+++||++|.++.+++.++++.++++++++++......... .  ......+. .... .........
T Consensus        64 ~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-~--~~~~~~i~-~~~~-~~~~~~~~~  138 (540)
T PRK13388         64 EMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGL-D--LPGVRVLD-VDTP-AYAELVAAA  138 (540)
T ss_pred             HHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhh-c--ccCceEEE-ccch-hhhhhhccc
Confidence            99999999999999999999999999999999999999999976533211110 0  00000000 0000 000000000


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                      ..........++++++++|||||||.||||+++|+++..........+++.++++.... .++.+..++...+.  ..+.
T Consensus       139 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~~~~--~~l~  215 (540)
T PRK13388        139 GALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVS-MPLFHSNAVMAGWA--PAVA  215 (540)
T ss_pred             cCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEe-eCchhhcchHHHHH--HHHH
Confidence            00001112357899999999999999999999999998776666666777777764332 22333222222222  2333


Q ss_pred             CCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       262 ~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .|++++++..  +++..+++.|+++++|++..+|+++..+++..+
T Consensus       216 ~G~~~v~~~~--~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~  258 (540)
T PRK13388        216 SGAAVALPAK--FSASGFLDDVRRYGATYFNYVGKPLAYILATPE  258 (540)
T ss_pred             cCcEEEECCC--CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC
Confidence            5778887764  478999999999999999999999998887544

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-31  Score=257.59  Aligned_cols=264  Identities=18%  Similarity=0.229  Sum_probs=176.9

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCc-cccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDK-DTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~-~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      +..++.+++.++++++|+++|+++.+... ....++.+||+||.++++++|++|.+         .+++||+ |+++++|
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~---------~~~~gd~-V~l~~~n  101 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ---------VAGPGDR-VAILAPQ  101 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH---------hcCCCCE-EEEECCC
Confidence            34578999999999999999998743110 00113468999999999999999974         2566786 9999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeC-CCCCc--HHHHHHHHHHcCCcEEEecCchhhhhhhhccccccc--chhhhhhhcccCC
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPL-DVTAP--EQRVKHILNEARPLLVIAENEQACENLAYKGRTVLS--LPQLRLLSASLSH  174 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~-~~~~~--~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  174 (311)
                      +++|+++++||+++|+++||+ ++.++  ++++.+++++++++++|+++........... ....  ...+..... .. 
T Consensus       102 ~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~-~~-  178 (612)
T PRK12476        102 GIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLR-NLPRLRRPRVIAIDA-IP-  178 (612)
T ss_pred             ChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHh-hcccccCceEEEecc-cc-
Confidence            999999999999999999999 57766  8999999999999999997543321111000 0000  000000000 00 


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC-CCCCCccceeecchhhhhhHHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP-YSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                       ....   .........++++++|+|||||||.||||++||+++..++......+. +.++++.   +..+++.|.++..
T Consensus       179 -~~~~---~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~---l~~~Pl~h~~g~~  251 (612)
T PRK12476        179 -DSAG---ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHG---VSWLPLYHDMGLS  251 (612)
T ss_pred             -cccc---ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceE---EEeCCcccccchH
Confidence             0000   001111235689999999999999999999999999876554444445 4555553   3334445444432


Q ss_pred             HHhhHhhcCCcEEEeCC-CCCCChhHHHHHHh--hcCceEEEeChHHHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPR-DVTRNPDQLIGTLE--KYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~-~~~~~p~~~~~~i~--~~~vt~~~~vP~~~~~ll~~  304 (311)
                      ...+.....|..+++.+ .+..+|..+++.|+  ++++|+++.+|+++..|+.+
T Consensus       252 ~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~  305 (612)
T PRK12476        252 MIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQ  305 (612)
T ss_pred             HHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHH
Confidence            21111122244554443 23347999999995  58999999999999988875

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.1e-30  Score=249.93  Aligned_cols=266  Identities=22%  Similarity=0.261  Sum_probs=186.7

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .|...++.+++++.++.+||++|+.+.++       +++||+||.++++++|+.|++.        |+++||+ |+++++
T Consensus        19 ~~~~~~l~~~~~~~~~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~--------G~~~gd~-V~i~~~   82 (547)
T PRK06087         19 YWGDASLADYWQQTARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAK--------GIEPGDR-VAFQLP   82 (547)
T ss_pred             CCCCCCHHHHHHHHHHHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECC
Confidence            55667899999999999999999986431       1579999999999999999853        7778886 899999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh----hhhhhcccccccchhhhhhhcccCC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC----ENLAYKGRTVLSLPQLRLLSASLSH  174 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  174 (311)
                      |+++|+++++|++++|++++|++|.++.+++.+++++++++++++++....    .........................
T Consensus        83 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (547)
T PRK06087         83 GWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA  162 (547)
T ss_pred             CCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCC
Confidence            999999999999999999999999999999999999999999999653210    0000000000000000000000000


Q ss_pred             -CC-----C-CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhh
Q psy8308         175 -NN-----I-PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV  247 (311)
Q Consensus       175 -~~-----~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (311)
                       ..     . ..... .........+++++|+|||||||.||||++||+++..........+.+.+.++.   +...++.
T Consensus       163 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~---l~~~pl~  238 (547)
T PRK06087        163 TSSLSLSQIIADYEP-LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVF---MMPAPLG  238 (547)
T ss_pred             cCccCHHHHhccCCc-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeE---EEecchH
Confidence             00     0 00000 001112456899999999999999999999999987765555555566666653   3334444


Q ss_pred             hhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       248 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      |..+.....+.....|+.+++...  +++..+++.|+++++|++..+|+.+..++.+.+
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~  295 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDI--FTPDACLALLEQQRCTCMLGATPFIYDLLNLLE  295 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCC--CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccc
Confidence            444433333444455778887764  479999999999999999988888877877654

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3.4e-31  Score=297.86  Aligned_cols=256  Identities=26%  Similarity=0.392  Sum_probs=193.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++||++|+.+.+.        ++||+||+++++++|+.|.+        .|+++|+. |+|+++++++
T Consensus      3720 ~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~--------~gv~~~~~-V~v~~~~s~~ 3782 (4334)
T PRK05691       3720 QSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRA--------AGVGVDQP-VALLAERGLD 3782 (4334)
T ss_pred             cCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEEeCCCHH
Confidence            4789999999999999999997654        57999999999999999975        37788885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccc-cccchhhhhhhcccCCCCCCCCc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRT-VLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      ++++++|++|+|+++||++|.++.+++.++++++++++++++.............. ....+.+.... ........   
T Consensus      3783 ~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 3858 (4334)
T PRK05691       3783 LLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE-EVQAGEVA--- 3858 (4334)
T ss_pred             HHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec-cccccccc---
Confidence            99999999999999999999999999999999999999999764321111000000 00000000000 00000000   


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                       .........+++.++++|||||||.||||+++|+++++.+......+.+++.++... ..+..|..++..++.++..  
T Consensus      3859 -~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~fd~s~~~~~~~l~~-- 3934 (4334)
T PRK05691       3859 -SHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQ-TASQSFDISVWQFLAAPLF-- 3934 (4334)
T ss_pred             -ccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEE-ecCCchhHHHHHHHHHHhC--
Confidence             011112346789999999999999999999999999998887777788888887654 3556666666666655554  


Q ss_pred             CCcEEEe-CCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         262 CGGVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       262 ~g~~~v~-~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                       |+.+++ +.....+|..+++.|++++||++.++|++++.|++.
T Consensus      3935 -G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~ 3977 (4334)
T PRK05691       3935 -GARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE 3977 (4334)
T ss_pred             -CCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh
Confidence             555554 444556899999999999999999999999988864

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=4.2e-31  Score=295.15  Aligned_cols=255  Identities=28%  Similarity=0.414  Sum_probs=192.0

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|.++++++||++|+.+.+.        ++||+||+++++++|+.|++.        |+++|++ |+++++|++
T Consensus       511 ~~~~~~~~~~~a~~~pd~~Al~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~g~~-V~i~~~~s~  573 (3956)
T PRK12467        511 PDCVHQLIEAQARQHPERPALVFGEQ--------VLSYAELNRQANRLAHVLIAA--------GVGPDVL-VGIAVERSI  573 (3956)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCH
Confidence            35799999999999999999997543        679999999999999999853        6777885 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCc
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      +++++++|++++|+++||++|.++.+++.++++++++++++++.................++...        ...... 
T Consensus       574 ~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-  644 (3956)
T PRK12467        574 EMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEPA--------DLLCGY-  644 (3956)
T ss_pred             HHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcccccCccEEEecccc--------cccccc-
Confidence            99999999999999999999999999999999999999999976432111000000000000000        000000 


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                      ..........++++++|+|||||||.||||+++|+++.+.+......+.+.+.++... ..++.|..+...++.++.   
T Consensus       645 ~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~-~~~~~fd~~~~~~~~~L~---  720 (3956)
T PRK12467        645 SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLM-VSTFAFDLGVTELFGALA---  720 (3956)
T ss_pred             CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEE-ecCccHhHHHHHHHHHHh---
Confidence            0011112345789999999999999999999999999988877777788888777544 344555544444454444   


Q ss_pred             CCcEEEeCC-CCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         262 CGGVLIIPR-DVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       262 ~g~~~v~~~-~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .|+++++.. ...++|..+++.|++++||++.++|+++..|++..+
T Consensus       721 ~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~  766 (3956)
T PRK12467        721 SGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR  766 (3956)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc
Confidence            466666654 445689999999999999999999999999987654

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=1.2e-30  Score=249.51  Aligned_cols=265  Identities=21%  Similarity=0.306  Sum_probs=188.5

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      +..++.+++.+.+..+|+++|+.+.+.        .+||+||.++++++|+.|.+.       -|+++||+ |+++++|+
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~-------~g~~~g~~-V~i~~~~~   71 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQE-------CGVRKGDR-VLLYMQNS   71 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHh-------hCCCCCCE-EEEECCCC
Confidence            345789999999999999999997643        579999999999999999753       15667785 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc-c---cccchhhhhhhcc--cCC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR-T---VLSLPQLRLLSAS--LSH  174 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~--~~~  174 (311)
                      ++|+++++||+++|++++|++|.++.+++.++++.++++++|++............. .   +............  ...
T Consensus        72 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (546)
T PRK08314         72 PQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAV  151 (546)
T ss_pred             hHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCc
Confidence            999999999999999999999999999999999999999999976543221111000 0   0000000000000  000


Q ss_pred             ----------CCCC--C--------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCC
Q psy8308         175 ----------NNIP--G--------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPS  234 (311)
Q Consensus       175 ----------~~~~--~--------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~  234 (311)
                                ....  .        ............++++++++|||||||.||||++||++++.++......+.+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  231 (546)
T PRK08314        152 PAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPE  231 (546)
T ss_pred             ccccccccccccccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCC
Confidence                      0000  0        0000001112356899999999999999999999999998877666666666766


Q ss_pred             CccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         235 ERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ++.   +...+++|..+..+..+.....|+.+++.+.  +++..+++.++++++|++..+|+++..++.+..
T Consensus       232 d~~---l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~  298 (546)
T PRK08314        232 SVV---LAVLPLFHVTGMVHSMNAPIYAGATVVLMPR--WDREAAARLIERYRVTHWTNIPTMVVDFLASPG  298 (546)
T ss_pred             ceE---EEEcCchHHHHHHHHHHHHHHcCCeEEecCC--CCHHHHHHHHHHhcCceecccHHHHHHHHhCCC
Confidence            664   3344555544443333344455778877664  478999999999999999999999999887543

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.98  E-value=5.5e-31  Score=252.61  Aligned_cols=259  Identities=21%  Similarity=0.294  Sum_probs=173.9

Q ss_pred             HHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHH
Q psy8308          27 RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQV  106 (311)
Q Consensus        27 ~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~  106 (311)
                      .++.+  +.+|+++|+++....      ..+||+||.++++++|++|++.       .|+++||+ |+++++|+++|+++
T Consensus        45 ~l~~~--~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~-------~G~~~gd~-V~i~~~n~~~~~~~  108 (560)
T PLN02574         45 FIFSH--HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHV-------MGVRQGDV-VLLLLPNSVYFPVI  108 (560)
T ss_pred             HHhcC--cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHH-------hCCCCCCE-EEEECCCcchHHHH
Confidence            44444  578999999875432      1469999999999999999851       26777886 99999999999999


Q ss_pred             HHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc-cCCCC---CCCCcc
Q psy8308         107 LLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS-LSHNN---IPGESM  182 (311)
Q Consensus       107 ~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~  182 (311)
                      ++||+++|++++|++|.++.+|+.++++.++++++|++.+...... .....+..++........ .....   ......
T Consensus       109 ~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (560)
T PLN02574        109 FLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLS-PLGVPVIGVPENYDFDSKRIEFPKFYELIKEDF  187 (560)
T ss_pred             HHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHH-hcCCcEEecCcccccccCccCcccHHHHhhcCC
Confidence            9999999999999999999999999999999999999754322111 111111101000000000 00000   000000


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh----cCCCCCCccceeecchhhhhhHHHHHHhhH
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT----FPYSPSERVGAFKTALTFVDAVSEIWGPLL  258 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
                      .........++++++++|||||||.||||++||+++...+......    ......+..  ++..++++|..+..+..+.
T Consensus       188 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~pl~h~~g~~~~~~~  265 (560)
T PLN02574        188 DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNV--YLAALPMFHIYGLSLFVVG  265 (560)
T ss_pred             cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcE--EEEecchHHHHHHHHHHHH
Confidence            0001122356899999999999999999999999988765433321    112222222  2344555555443333333


Q ss_pred             hhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       259 ~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ....|+++++...  +++..+++.|++|++|++..+|+++..|++..+
T Consensus       266 ~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  311 (560)
T PLN02574        266 LLSLGSTIVVMRR--FDASDMVKVIDRFKVTHFPVVPPILMALTKKAK  311 (560)
T ss_pred             HHhcCCEEEEecC--CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcc
Confidence            3345778777764  579999999999999999999999999988653

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.98  E-value=2e-30  Score=244.22  Aligned_cols=246  Identities=21%  Similarity=0.250  Sum_probs=183.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+.|.+++.++||++|+.+.+.        .+||+||.++++++|+.|.+.        |..+||+ |+++++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~--------g~~~~~~-v~i~~~~~~~   64 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAAL--------GVKKGDR-VALLMKNGME   64 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHH
Confidence            4688999999999999999987642        579999999999999999853        5667785 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      |+++++|++++|++++|+++.++.+++.++++.++++.+++++..........  .. .++.+.   ..   ... .   
T Consensus        65 ~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~--~~-~~~~~~---~~---~~~-~---  131 (483)
T PRK03640         65 MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI--SV-KFAELM---NG---PKE-E---  131 (483)
T ss_pred             HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--cc-cHHHHh---hc---ccc-c---
Confidence            99999999999999999999999999999999999999999764332111100  00 011100   00   000 0   


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                       ........++++++++|||||||.||||++||+++...+......+++.+.++...   .++++|..+... .+.....
T Consensus       132 -~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~g~~~-~~~~l~~  206 (483)
T PRK03640        132 -AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLA---AVPIFHISGLSI-LMRSVIY  206 (483)
T ss_pred             -CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEE---ecCHHHHHHHHH-HHHHHhc
Confidence             01111234678999999999999999999999998876655555566777776433   334444333211 2222345


Q ss_pred             CcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       263 g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |+++++...  +++..+++.|+++++|++.++|+++..|++..
T Consensus       207 G~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~  247 (483)
T PRK03640        207 GMRVVLVEK--FDAEKINKLLQTGGVTIISVVSTMLQRLLERL  247 (483)
T ss_pred             CCEEEecCC--CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc
Confidence            778877764  47999999999999999999999999998654

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=1.9e-30  Score=249.45  Aligned_cols=265  Identities=25%  Similarity=0.319  Sum_probs=183.2

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++++++++++|+++|+.+.+.        .+||+||.++++++|++|.+.        |+++||+ |+++++|++
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~--------gi~~gd~-V~l~~~n~~   93 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRAL--------GVRPGDR-VAIVLPNCP   93 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCCH
Confidence            45799999999999999999987542        579999999999999999854        6677886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc----cccccchh---------hh--
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG----RTVLSLPQ---------LR--  166 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~----~~~~~~~~---------~~--  166 (311)
                      +|+++++|++++|++++|++|.++.+++.+++++++++++|+.+...........    ..+.....         ..  
T Consensus        94 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  173 (573)
T PRK05605         94 QHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALR  173 (573)
T ss_pred             HHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccc
Confidence            9999999999999999999999999999999999999999986543211100000    00000000         00  


Q ss_pred             ----hhh---ccc---CCCCCC-----CC-cc---cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh
Q psy8308         167 ----LLS---ASL---SHNNIP-----GE-SM---LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA  227 (311)
Q Consensus       167 ----~~~---~~~---~~~~~~-----~~-~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~  227 (311)
                          ...   ...   ......     .. ..   ..........+++++++|||||||.||||++||+++..+......
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~  253 (573)
T PRK05605        174 LPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA  253 (573)
T ss_pred             cccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence                000   000   000000     00 00   000111235689999999999999999999999998876543332


Q ss_pred             hcC-CCC-CCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         228 TFP-YSP-SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       228 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      .+. +.. .++   ++...+++|..+..+..+.....|+.+++.+.  +++..+++.|+++++|++.++|+++..|+++.
T Consensus       254 ~~~~~~~~~~~---~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~  328 (573)
T PRK05605        254 WVPGLGDGPER---VLAALPMFHAYGLTLCLTLAVSIGGELVLLPA--PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAA  328 (573)
T ss_pred             hccccCCCCcE---EEEecChHHHHHHHHHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHhCCEEEEchHHHHHHHHhCc
Confidence            221 222 233   23344445544443333444455777777653  47999999999999999999999999999876


Q ss_pred             hhh
Q psy8308         306 KMT  308 (311)
Q Consensus       306 ~~~  308 (311)
                      +..
T Consensus       329 ~~~  331 (573)
T PRK05605        329 EER  331 (573)
T ss_pred             ccc
Confidence            543

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.98  E-value=9.7e-31  Score=249.22  Aligned_cols=255  Identities=18%  Similarity=0.210  Sum_probs=182.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+++.+++.  ++++|+.+.+.        .+||+||.++++++|++|++.+       +.+++++ |+++++|+++
T Consensus         5 ~~~~~~l~~~a~--~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~-------~~~~~~~-V~i~~~n~~~   66 (529)
T PRK07867          5 PTVAELLLPLAE--DDDRGLYFEDS--------FTSWREHIRGSAARAAALRARL-------DPTRPPH-VGVLLDNTPE   66 (529)
T ss_pred             ccHHHHHHHhcc--cCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhh-------CCCCCCE-EEEECCCCHH
Confidence            468888888875  68899887542        5799999999999999998631       3455675 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCCCc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      |+++++||+++|++++|+|+.++.+++.+++++++++++|+++.......... .......+.. ..........  .  
T Consensus        67 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~--~--  141 (529)
T PRK07867         67 FSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSP-AWADELAAHR--D--  141 (529)
T ss_pred             HHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccc-cHHHHhcccC--C--
Confidence            99999999999999999999999999999999999999999765432111100 0000000000 0000000000  0  


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                       .........++++++++|||||||.||||++||+++..+.......+.+.+.++.   +...+++|..+.....+....
T Consensus       142 -~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~---l~~~pl~~~~~~~~~~~~~l~  217 (529)
T PRK07867        142 -AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVC---YVSMPLFHSNAVMAGWAVALA  217 (529)
T ss_pred             -CCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEE---EEecchhHHHHHHHHHHHHHh
Confidence             0011112457899999999999999999999999998776666666677766653   233444444443332333444


Q ss_pred             CCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       262 ~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .|+++++.+.  +++..+++.|+++++|++.++|+.+..++...+
T Consensus       218 ~G~~~~~~~~--~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~  260 (529)
T PRK07867        218 AGASIALRRK--FSASGFLPDVRRYGATYANYVGKPLSYVLATPE  260 (529)
T ss_pred             cCceEEecCC--CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC
Confidence            5778877664  479999999999999999999999998887554

>PRK12316 peptide synthase; Provisional

Probab=99.98  E-value=7e-31  Score=297.51  Aligned_cols=253  Identities=31%  Similarity=0.486  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++|+++|+.+.+.        ++||+||+++++++|+.|++.        |+++||+ |+++++|+++
T Consensus       511 ~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~--------gv~~g~~-V~l~~~~s~~  573 (5163)
T PRK12316        511 RGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIER--------GVGPDVL-VGVAMERSIE  573 (5163)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHH
Confidence            5799999999999999999997543        679999999999999999853        6777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      ++++++|++++|+++||++|.++.+++.++++++++++++++.................++....   .     ..... 
T Consensus       574 ~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~-  644 (5163)
T PRK12316        574 MVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPAA---W-----LEGYS-  644 (5163)
T ss_pred             HHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCcch---h-----hccCC-
Confidence            99999999999999999999999999999999999999999754322111000111111110000   0     00000 


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                      .........++++++|+|||||||.||||+++|+++.+.+.+....+++.+.++... ..++.|..+...++.++.   .
T Consensus       645 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~-~~p~~fd~~~~~~~~~L~---~  720 (5163)
T PRK12316        645 EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQ-KTPFSFDVSVWEFFWPLM---S  720 (5163)
T ss_pred             CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEe-eCCeehHHHHHHHHHHHh---C
Confidence            001112245789999999999999999999999999988888777788888776543 344445444444444444   4


Q ss_pred             CcEEEeC-CCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         263 GGVLIIP-RDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       263 g~~~v~~-~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |+++++. +...++|..+++.|++++||++.++|+++..|++..
T Consensus       721 G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~  764 (5163)
T PRK12316        721 GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE  764 (5163)
T ss_pred             CCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc
Confidence            6666665 334568999999999999999999999999988643

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=2.6e-30  Score=247.72  Aligned_cols=266  Identities=21%  Similarity=0.301  Sum_probs=187.3

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|.+.++++|+++|+++.+.+      +.+||+||.++++++|+.|.+.        |+.+||+ |+++++|++
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~--------gi~~g~~-V~i~~~~~~   81 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLAL--------GVQPGDR-VGIWAPNCA   81 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCCh
Confidence            357999999999999999999875432      2579999999999999999753        6677785 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh----hhhhc--c-----------cccccchh
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE----NLAYK--G-----------RTVLSLPQ  164 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~----~~~~~--~-----------~~~~~~~~  164 (311)
                      +|+++++|++++|++++|+++.++.+++.+++++++++++|+.......    .....  .           ........
T Consensus        82 ~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (558)
T PRK12583         82 EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG  161 (558)
T ss_pred             HHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceE
Confidence            9999999999999999999999999999999999999999986532110    00000  0           00000000


Q ss_pred             hhhhhcccCCC-----CC----CCC--cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCC
Q psy8308         165 LRLLSASLSHN-----NI----PGE--SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP  233 (311)
Q Consensus       165 ~~~~~~~~~~~-----~~----~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~  233 (311)
                      ...........     ..    ...  ...........++++++++|||||||.||||.+||+++..++......+.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  241 (558)
T PRK12583        162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE  241 (558)
T ss_pred             EEEecCCCCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC
Confidence            00000000000     00    000  00000011234678999999999999999999999999877766666666776


Q ss_pred             CCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         234 SERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .++.   +...+++|.++.++..+.....|++++++.. .+++..+++.|+++++|++..+|+++..++.+..
T Consensus       242 ~d~~---~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~  310 (558)
T PRK12583        242 HDRL---CVPVPLYHCFGMVLANLGCMTVGACLVYPNE-AFDPLATLQAVEEERCTALYGVPTMFIAELDHPQ  310 (558)
T ss_pred             CCeE---EEecCchhhhhHHHHHHHHHhcCceEEeecC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc
Confidence            6654   3344555555544444444445777776542 3579999999999999999999999988887654

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.98  E-value=3.4e-30  Score=246.06  Aligned_cols=262  Identities=20%  Similarity=0.204  Sum_probs=185.6

Q ss_pred             hhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          20 YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      ....++.+++.++++.+|+++|+++.+.        .+||+||.++++++|++|.+.        |+++||+ |+++++|
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~--------g~~~g~~-V~i~~~n   69 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQ--------GVRRGDR-VAVWLPN   69 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCC
Confidence            3345799999999999999999985332        679999999999999999853        6677886 8999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh----hhhhcc-cccccchhhhhhhcccC-
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE----NLAYKG-RTVLSLPQLRLLSASLS-  173 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~-  173 (311)
                      +++|+++++||+++|++++|+++..+.+++.++++.++++++|++......    ...... .....+..+........ 
T Consensus        70 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (540)
T PRK06164         70 CIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADA  149 (540)
T ss_pred             cHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCccc
Confidence            999999999999999999999999999999999999999999997553110    000000 00000000000000000 


Q ss_pred             --------CCCCCC----CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceee
Q psy8308         174 --------HNNIPG----ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFK  241 (311)
Q Consensus       174 --------~~~~~~----~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (311)
                              ......    ............++++++++|||||||.||||++||+++..+.......+.+.+.++..   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l---  226 (540)
T PRK06164        150 TPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLL---  226 (540)
T ss_pred             CCCCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEE---
Confidence                    000000    00000001123467899999999999999999999999988776666666777666543   


Q ss_pred             cchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         242 TALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      ..+++.|.++. ...+.....|..+++...  +++..+++.|+++++|+++.+|+++..|+++
T Consensus       227 ~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~  286 (540)
T PRK06164        227 AALPFCGVFGF-STLLGALAGGAPLVCEPV--FDAARTARALRRHRVTHTFGNDEMLRRILDT  286 (540)
T ss_pred             EcCCchhHHHH-HHHHHHHhcCceEEecCC--CCHHHHHHHHHHhCCeeecCCHHHHHHHHHh
Confidence            33444444332 223344445778777664  4799999999999999999999999999886

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.98  E-value=1.8e-31  Score=246.63  Aligned_cols=250  Identities=29%  Similarity=0.445  Sum_probs=171.5

Q ss_pred             HHHHHhhCCCceEEEe-cccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHH
Q psy8308          29 FEKNAALSPDNTALIF-EEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVL  107 (311)
Q Consensus        29 ~~~~a~~~pd~~Ai~~-~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~  107 (311)
                      |+++|+++||++|+++ ..        +.+||+||.++++++|..|.+.        |+++||+ |+++++|+++|++++
T Consensus         1 f~~~a~~~pd~~a~~~~~~--------~~~Ty~~l~~~v~~la~~L~~~--------g~~~~~~-V~i~~~n~~~~~~~~   63 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEG--------RSLTYKQLYERVRKLAAALRKL--------GVKKGDR-VAILLPNSIEFVVAF   63 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTT--------EEEEHHHHHHHHHHHHHHHHHT--------TSSTTSE-EEEEESSSHHHHHHH
T ss_pred             ChhHHhhCCCceEEEECCC--------EEEEHHHHHHHHHHHhhHHHHh--------CCCcccc-ccccCCccceeeeee
Confidence            6789999999999998 22        3789999999999999999853        6677886 899999999999999


Q ss_pred             HHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEe----cCchhhhhhh-hcc-----cccccchhhhhhhcccCCCCC
Q psy8308         108 LAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA----ENEQACENLA-YKG-----RTVLSLPQLRLLSASLSHNNI  177 (311)
Q Consensus       108 la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~----~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~  177 (311)
                      +|++++|++++|++|.++.+++.++++.++++++|+    ++.. ..... ...     ..+..++......    ....
T Consensus        64 ~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  138 (417)
T PF00501_consen   64 LACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDLPK----KEAL  138 (417)
T ss_dssp             HHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSCTT----CHHH
T ss_pred             cccccccccccccccccccccccccccccceeEEEEeccccccc-cccchhhhccccccccccccccccccc----cccc
Confidence            999999999999999999999999999999999997    2221 11110 000     0000111000000    0000


Q ss_pred             CCCcccCCCCCC-CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHH--hhcCCCCCCccceeecchhhhhhHHHHH
Q psy8308         178 PGESMLHSDNNN-EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQW--ATFPYSPSERVGAFKTALTFVDAVSEIW  254 (311)
Q Consensus       178 ~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
                      ............ ..++++++++|||||||.||+|++||++++..+....  ....++  ++.   +...++.|..+.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~---l~~~p~~~~~g~~~  213 (417)
T PF00501_consen  139 KSASLSDEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRI---LSFLPLSHIFGLIS  213 (417)
T ss_dssp             HHHHHCHCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEE---EESS-TTSHHHHHH
T ss_pred             cccccccccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceE---Eeeccccccccccc
Confidence            000000000000 0468999999999999999999999999988765543  112222  332   33345555555434


Q ss_pred             HhhHhhcCCcEEEeCCCCC-CChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         255 GPLLSARCGGVLIIPRDVT-RNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       255 ~~~~~~~~g~~~v~~~~~~-~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ..+.....|+.++++.... .+++.+++.|+++++|+++.+|+++..|+++.
T Consensus       214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~  265 (417)
T PF00501_consen  214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSP  265 (417)
T ss_dssp             HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhcccccccccccccccccccccccc
Confidence            4444555677888866432 23577899999999999999999999999854

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.3e-30  Score=245.38  Aligned_cols=263  Identities=21%  Similarity=0.238  Sum_probs=188.2

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+.|.+.+..+|+++|+.+.+.        ++||+||.++++++|+.|.+        .|+++||+ |+++++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~--------~gv~~g~~-V~l~~~~~~~   67 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAA--------LGIGKGDR-VAIWAPNSPH   67 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEECCCChH
Confidence            4688999999999999999997542        67999999999999999975        36777886 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCC--------
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSH--------  174 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  174 (311)
                      ++++++||+++|++++|+++.++.+++.++++.++++++++++.......... ........+.........        
T Consensus        68 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (513)
T PRK07656         68 WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDPHTEKMKT  146 (513)
T ss_pred             HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccccCcccccc
Confidence            99999999999999999999999999999999999999999765332111100 000000000000000000        


Q ss_pred             -CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         175 -NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       175 -~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                       .................++++++++|||||||.||||.+||+++...+......+.+.+.++..   ...++.|.++..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  223 (513)
T PRK07656        147 FTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYL---AANPFFHVFGYK  223 (513)
T ss_pred             HHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEE---EccchHHHHHHH
Confidence             0000000000111234678899999999999999999999999887776656666677666643   334444444433


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      +..+.....|+.+++...  .+++.+++.|+++++|++.++|+++..|++..+..
T Consensus       224 ~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  276 (513)
T PRK07656        224 AGVNAPLMRGATILPLPV--FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS  276 (513)
T ss_pred             HHHHHHHHcCceEEecCc--CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC
Confidence            333333445777777553  47999999999999999999999999998876544

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.6e-30  Score=252.72  Aligned_cols=264  Identities=20%  Similarity=0.264  Sum_probs=178.2

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCc-cccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDK-DTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~-~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      +..++.++++++++.+|+++|+++.+... ....++.+||+||.++++++|++|++         .+++||+ |+++++|
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~---------~~~~gd~-V~i~~~n   88 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ---------VTKPGDR-VAILAPQ   88 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH---------hcCCCCE-EEEEcCC
Confidence            34589999999999999999998743110 00112468999999999999999974         2466786 9999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeCC-CCCc--HHHHHHHHHHcCCcEEEecCchhhhhhhhcc-cccccchhhhhhhcccCCC
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPLD-VTAP--EQRVKHILNEARPLLVIAENEQACENLAYKG-RTVLSLPQLRLLSASLSHN  175 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~~-~~~~--~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  175 (311)
                      +++|+++++||+++|+++||++ +...  .+++.+++++++++++|++............ ........+..... .. .
T Consensus        89 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  166 (631)
T PRK07769         89 NLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA-VP-D  166 (631)
T ss_pred             ChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc-cc-c
Confidence            9999999999999999999994 4443  6899999999999999997643221110000 00000000000000 00 0


Q ss_pred             CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHH
Q psy8308         176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWG  255 (311)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                      .. ..   ........++++++|+|||||||.||||++||+++..+.......+.+.+.++..   ..++++|..+... 
T Consensus       167 ~~-~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l---~~~Pl~h~~gl~~-  238 (631)
T PRK07769        167 EV-GA---TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGV---SWLPFFHDMGLIT-  238 (631)
T ss_pred             cc-cc---ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEE---EeCCCcCchhhHH-
Confidence            00 00   0011123568999999999999999999999999987766655666666666543   3344554444322 


Q ss_pred             hhHhhcCCcEEEeCC--CCCCChhHHHHHHhhcCc---eEEEeChHHHHHHHHH
Q psy8308         256 PLLSARCGGVLIIPR--DVTRNPDQLIGTLEKYKV---ERLVLVPSLLRSMLMF  304 (311)
Q Consensus       256 ~~~~~~~g~~~v~~~--~~~~~p~~~~~~i~~~~v---t~~~~vP~~~~~ll~~  304 (311)
                      .+.....|+.+++..  .+..+|..+++.++++++   +++..+|+++..+++.
T Consensus       239 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~  292 (631)
T PRK07769        239 VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA  292 (631)
T ss_pred             HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence            222333466666543  233379999999999987   7899999998877653

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.97  E-value=2.3e-30  Score=247.57  Aligned_cols=263  Identities=20%  Similarity=0.215  Sum_probs=181.2

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      +..++.+.+.+.++.+|+++|+.+..++      +.+||+||.++++++|+.|++.        |+.+||+ |+++++|+
T Consensus        26 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~--------g~~~g~~-V~i~~~~~   90 (546)
T PLN02330         26 DKLTLPDFVLQDAELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSL--------GLRKGQV-VVVVLPNV   90 (546)
T ss_pred             CCCcHHHHHhhhhhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCc
Confidence            3467999999999999999999864322      1579999999999999999864        6677885 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchh-----hhhhhcccCCC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQ-----LRLLSASLSHN  175 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  175 (311)
                      ++++++++|++++|++++|+|+.++.+++.++++.+++++++++........ ........+..     ...........
T Consensus        91 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  169 (546)
T PLN02330         91 AEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVK-GLGLPVIVLGEEKIEGAVNWKELLEAA  169 (546)
T ss_pred             hHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHh-hcCCcEEEecCCCCCCcccHHHHHhhc
Confidence            9999999999999999999999999999999999999999999765432211 11111110000     00000000000


Q ss_pred             CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCc-cceeecchhhhhhHHHHH
Q psy8308         176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER-VGAFKTALTFVDAVSEIW  254 (311)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  254 (311)
                      .  . ...........++++++++|||||||.||||++||+++..++....  +...+... ....+..++++|..+...
T Consensus       170 ~--~-~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~g~~~  244 (546)
T PLN02330        170 D--R-AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSL--FSVGPEMIGQVVTLGLIPFFHIYGITG  244 (546)
T ss_pred             c--c-cCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHh--hccCccccCceEEEEecChHHHHHHHH
Confidence            0  0 0000011123467899999999999999999999999876554321  22222110 112334455555443322


Q ss_pred             HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         255 GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       255 ~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..+.....|+.+++...  +++..+++.|+++++|++..+|+++..|+....
T Consensus       245 ~~~~~l~~g~~~~~~~~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  294 (546)
T PLN02330        245 ICCATLRNKGKVVVMSR--FELRTFLNALITQEVSFAPIVPPIILNLVKNPI  294 (546)
T ss_pred             HHHHHhhcCCEEEEecc--cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc
Confidence            22233344777777654  479999999999999999999999999987543

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.97  E-value=4.4e-30  Score=242.71  Aligned_cols=256  Identities=20%  Similarity=0.263  Sum_probs=183.5

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+++.++++++|+++|+.+.+.        .+||.||.++++++|.+|.+.        +..++++ |+++++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~--------g~~~~~~-v~i~~~~~~~   64 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHAR--------GIGQGDV-VALLMKNSAA   64 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHH
Confidence            3578899999999999999987543        579999999999999999853        5666775 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      ++++++|++++|++++|+++.++.+++.++++.+++++++++........ . .......+....  ..  .........
T Consensus        65 ~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~~~--~~--~~~~~~~~~  138 (497)
T PRK06145         65 FLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-ETPKIVIDAAAQ--AD--SRRLAQGGL  138 (497)
T ss_pred             HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-ccceEEecCccc--ch--hHHHhccCC
Confidence            99999999999999999999999999999999999999999755432110 0 000000100000  00  000000000


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                      .........++++++++|||||||.||||++||+++..........+.+...++.   +...+++|.....+..+.....
T Consensus       139 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~l~~  215 (497)
T PRK06145        139 EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERL---LVVGPLYHVGAFDLPGIAVLWV  215 (497)
T ss_pred             CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEE---EEecCchhHhHHHHHHHHHHhc
Confidence            0011112356899999999999999999999999987655444445566666653   3334555544433333333445


Q ss_pred             CcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       263 g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      |+.+++.+.  +++..+++.++++++|++..+|+++..|++..+
T Consensus       216 g~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~  257 (497)
T PRK06145        216 GGTLRIHRE--FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPD  257 (497)
T ss_pred             cCEEEECCc--CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCC
Confidence            777777664  479999999999999999999999999987543

>PLN02479 acetate-CoA ligase

Probab=99.97  E-value=6.7e-30  Score=245.46  Aligned_cols=261  Identities=16%  Similarity=0.178  Sum_probs=175.6

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++..++.+.+..+|+++|+.+...        .+||+||.++++++|.+|.+.        |+++||+ |+++++|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~--------g~~~gd~-V~i~~~n~~~   82 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKR--------SIGPGST-VAVIAPNIPA   82 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCcHH
Confidence            3567788899999999999987432        579999999999999999853        6778886 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc---c---ccccchhhhhhhccc----
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG---R---TVLSLPQLRLLSASL----  172 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~----  172 (311)
                      |+++++||+++|++++|+++.++.+++.++++.++++++|++............   .   .....+.+.......    
T Consensus        83 ~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (567)
T PLN02479         83 MYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPK  162 (567)
T ss_pred             HHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcc
Confidence            999999999999999999999999999999999999999997643221100000   0   000000000000000    


Q ss_pred             ------CCCCC------CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCcccee
Q psy8308         173 ------SHNNI------PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAF  240 (311)
Q Consensus       173 ------~~~~~------~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~  240 (311)
                            .....      ...............++.++++|||||||.||||++||+++..........+.+..+++.   
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~---  239 (567)
T PLN02479        163 SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVY---  239 (567)
T ss_pred             ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEE---
Confidence                  00000      000000000011233467889999999999999999999986554444444555555543   


Q ss_pred             ecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         241 KTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +...+++|..+..+........|..+++ ..  +++..+++.++++++|++..+|+++.+|+.+.+
T Consensus       240 ~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~  302 (567)
T PLN02479        240 LWTLPMFHCNGWCFTWTLAALCGTNICL-RQ--VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPK  302 (567)
T ss_pred             EEecchhhhhhHHHHHHHHhhcCceEec-cC--CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhh
Confidence            3334444443322222222233555544 32  579999999999999999999999999987654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=2.8e-30  Score=266.43  Aligned_cols=263  Identities=23%  Similarity=0.234  Sum_probs=186.1

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+.+.++++++|+++|+.+..+       +++||+||.++++++|++|.+         ++++||+ |+++++|+++
T Consensus       615 ~~l~~~~~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~---------~~~~g~~-V~i~~~n~~~  677 (1146)
T PRK08633        615 PPLAEAWIDTAKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKR---------ELKDEEN-VGILLPPSVA  677 (1146)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHH---------hCCCCCe-EEEECCCchH
Confidence            5788999999999999999986421       157999999999999999964         3466785 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhh-----c--ccccccchhhhh-------h
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAY-----K--GRTVLSLPQLRL-------L  168 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~-----~--~~~~~~~~~~~~-------~  168 (311)
                      ++++++||+++|++++|+||..+++++.+++++++++++++++.........     .  ...+...+....       .
T Consensus       678 ~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (1146)
T PRK08633        678 GALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL  757 (1146)
T ss_pred             HHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHH
Confidence            9999999999999999999999999999999999999999975433221100     0  000000000000       0


Q ss_pred             hcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhh
Q psy8308         169 SASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVD  248 (311)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
                      .........+.............++|+++++|||||||.||||++||+++..+.......+...+.++.   +..+++.|
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~---l~~~p~~h  834 (1146)
T PRK08633        758 TALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVI---LSSLPFFH  834 (1146)
T ss_pred             HHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEE---EEcCcHHH
Confidence            000000000000000000123457899999999999999999999999998877666666667766653   34455555


Q ss_pred             hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..+.....+.....|+.+++..+ .++++.+++.++++++|++..+|++++.|+++.+
T Consensus       835 ~~g~~~~~~~~l~~g~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  891 (1146)
T PRK08633        835 SFGLTVTLWLPLLEGIKVVYHPD-PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK  891 (1146)
T ss_pred             HHhHHHHHHHHHHCCCEEEEeCC-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc
Confidence            55443323334445667766543 3579999999999999999999999999887544

>PRK08315 AMP-binding domain protein; Validated

Probab=99.97  E-value=7.5e-30  Score=244.59  Aligned_cols=267  Identities=22%  Similarity=0.323  Sum_probs=187.3

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      .+.++.++|.+.++++|+++|+.+.+..      +.+||+||.++++++|+.|.+.        |+++||+ |+++++|+
T Consensus        14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~--------gi~~g~~-V~i~~~~~   78 (559)
T PRK08315         14 LEQTIGQLLDRTAARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLAL--------GIEKGDR-VGIWAPNV   78 (559)
T ss_pred             hhccHHHHHHHHHHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCC
Confidence            3458999999999999999999875332      2579999999999999999853        6777886 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh----hhhcccc-------------cccch
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN----LAYKGRT-------------VLSLP  163 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~----~~~~~~~-------------~~~~~  163 (311)
                      ++|++++||++++|++++|++|..+.+++.++++.+++++++++.......    .......             .....
T Consensus        79 ~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (559)
T PRK08315         79 PEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELR  158 (559)
T ss_pred             hHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCce
Confidence            999999999999999999999999999999999999999999875421100    0000000             00000


Q ss_pred             hhhhhhc-----------ccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCC
Q psy8308         164 QLRLLSA-----------SLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYS  232 (311)
Q Consensus       164 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~  232 (311)
                      .......           .....................++++++++|||||||.||||++||+++..+.......+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~  238 (559)
T PRK08315        159 RVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLT  238 (559)
T ss_pred             eEEeecccCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCC
Confidence            0000000           00000000000000011123467899999999999999999999999987766666666777


Q ss_pred             CCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         233 PSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +.++.   +...+++|..+..+..+.....|+.+++... .++|..+++.|+++++|++..+|+++..++.+..
T Consensus       239 ~~d~~---~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~  308 (559)
T PRK08315        239 EEDRL---CIPVPLYHCFGMVLGNLACVTHGATMVYPGE-GFDPLATLAAVEEERCTALYGVPTMFIAELDHPD  308 (559)
T ss_pred             CCceE---EEecCcHHHHHHHHHHHHHHhccceEEEecC-CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcc
Confidence            76653   3344555555544444444445777764332 3579999999999999999999999998887654

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=4.9e-30  Score=245.09  Aligned_cols=262  Identities=21%  Similarity=0.241  Sum_probs=181.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+.+.+++..+|+++|+.+.+.        .+||.||.++++++|.+|.+.        |.++||+ |+++++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~--------g~~~g~~-V~i~~~~~~~   79 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRR--------GVGFGDR-VLILMLNRTE   79 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHH
Confidence            4689999999999999999987643        579999999999999999853        6677785 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc-----cCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS-----LSHNNI  177 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  177 (311)
                      |+++++|++++|++++|+++..+.+++.++++.+++++++++............ ..............     ....+.
T Consensus        80 ~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  158 (542)
T PRK07786         80 FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRD-IVPLLSTVVVAGGSSDDSVLGYEDL  158 (542)
T ss_pred             HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhh-ccCccceEEEecCCCcccccCHHHH
Confidence            999999999999999999999999999999999999999997643221111000 00000000000000     000000


Q ss_pred             CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCC-CCCCccceeecchhhhhhHHHHHHh
Q psy8308         178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPY-SPSERVGAFKTALTFVDAVSEIWGP  256 (311)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
                      ...............+++++++|||||||.||||++||+++...+......+.. ...++.   +...++.|..+. +..
T Consensus       159 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~g~-~~~  234 (542)
T PRK07786        159 LAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVG---FVGVPLFHIAGI-GSM  234 (542)
T ss_pred             hhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceE---EEecchHHHHHH-HHH
Confidence            000000001112345789999999999999999999999998766555544444 333332   223333333222 223


Q ss_pred             hHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         257 LLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       257 ~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +.....|+.+++.....++|..+++.|+++++|.++.+|+++..|+....
T Consensus       235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  284 (542)
T PRK07786        235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ  284 (542)
T ss_pred             HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcc
Confidence            33444577777654223589999999999999999999999999987543

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.97  E-value=5.3e-30  Score=243.47  Aligned_cols=264  Identities=22%  Similarity=0.265  Sum_probs=187.4

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.+++.+.++.+|+++|+.+.+.        .+||+||.++++++|+.|.+.        |+.+||+ |+++++|++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~--------gi~~~~~-V~l~~~~~~   72 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDL--------GLKKGDR-VAALGHNSD   72 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCH
Confidence            35799999999999999999987652        579999999999999999753        6777885 899999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc-ccc--cchhhhhhhcc----cCC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR-TVL--SLPQLRLLSAS----LSH  174 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~----~~~  174 (311)
                      +|+++++||+++|++++|+++.++.+++.++++.++++++|++............. ...  ...........    ...
T Consensus        73 ~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (523)
T PRK08316         73 AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDF  152 (523)
T ss_pred             HHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhH
Confidence            99999999999999999999999999999999999999999976543221111000 000  00000000000    000


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW  254 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
                      ..................+++++++|||||||.||+|++||+++..........+.+.+.++.   +..+++.|..+..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~---~~~~p~~h~~g~~~  229 (523)
T PRK08316        153 ADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIP---LHALPLYHCAQLDV  229 (523)
T ss_pred             HHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceE---EEccCCchhhhHHH
Confidence            000000000001123456889999999999999999999999998776655556667766654   23344444444322


Q ss_pred             HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         255 GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       255 ~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      ..+.....|+++++...  .+++.+++.|+++++|++..+|+++..|+++.+.
T Consensus       230 ~~~~~~~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  280 (523)
T PRK08316        230 FLGPYLYVGATNVILDA--PDPELILRTIEAERITSFFAPPTVWISLLRHPDF  280 (523)
T ss_pred             HHHHHHhcCceEEEecC--CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc
Confidence            22223345778887654  4799999999999999999999999999876543

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2e-29  Score=242.18  Aligned_cols=262  Identities=21%  Similarity=0.249  Sum_probs=181.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+++.+++..+|+++|+.+.+.        .+||+||.++++++|++|.+.        |+++||. |+++++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~--------g~~~g~~-V~i~~~n~~~   95 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQR--------GVGAGDR-VAVFLPNCPQ   95 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCcH
Confidence            5799999999999999999987543        579999999999999999753        6677885 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc----ccccchhhhhhhcc--cCCC-
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR----TVLSLPQLRLLSAS--LSHN-  175 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-  175 (311)
                      |+++++|++++|++++|++|.++.+++.++++.++++++++++............    .+............  .... 
T Consensus        96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  175 (567)
T PRK06178         96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPD  175 (567)
T ss_pred             HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccc
Confidence            9999999999999999999999999999999999999999976543211111000    00000000000000  0000 


Q ss_pred             ----------CCC------CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh-hcCCCCCCccc
Q psy8308         176 ----------NIP------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERVG  238 (311)
Q Consensus       176 ----------~~~------~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-~~~~~~~~~~~  238 (311)
                                ...      ..............+++++|+|||||||.||||++||+++......... .....+.++. 
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~-  254 (567)
T PRK06178        176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVF-  254 (567)
T ss_pred             ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEE-
Confidence                      000      0000000111234689999999999999999999999998765443322 2334445543 


Q ss_pred             eeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         239 AFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                        +..++++|..+.....+.....|+++++...  +++..+++.|+++++|.+..+|..+..|+...+
T Consensus       255 --l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~--~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~  318 (567)
T PRK06178        255 --LSFLPEFWIAGENFGLLFPLFSGATLVLLAR--WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR  318 (567)
T ss_pred             --EEecchHHHHHHHHHHHHHHHcCceEEEeCC--CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC
Confidence              3334444444433333334445778877764  479999999999999999999999988877543

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.2e-29  Score=241.38  Aligned_cols=264  Identities=19%  Similarity=0.218  Sum_probs=188.4

Q ss_pred             hhhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEE
Q psy8308          17 EKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS   96 (311)
Q Consensus        17 ~~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~   96 (311)
                      +...+..++.++|.++++++|+++|+++.+.        .+||+||.++++++|+.|.+.        |+++||+ |+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~--------gv~~~~~-V~i~   68 (524)
T PRK06188          6 DLLHSGATYGHLLVSALKRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEAL--------GLGTGDA-VALL   68 (524)
T ss_pred             hhhcCCccHHHHHHHHHHHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEE
Confidence            3444556899999999999999999987542        579999999999999999753        6677785 9999


Q ss_pred             eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc------ccccchhhhhhhc
Q psy8308          97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR------TVLSLPQLRLLSA  170 (311)
Q Consensus        97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  170 (311)
                      ++|+++|+++++|++++|++++|++|..+.+++.++++.++++++++++............      .+..+........
T Consensus        69 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (524)
T PRK06188         69 SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVD  148 (524)
T ss_pred             CCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhh
Confidence            9999999999999999999999999999999999999999999999976521111110000      0000000000000


Q ss_pred             ccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308         171 SLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      ...  ....... ........++++++++|||||||.||||++||+++..........+.+...++.   +...++.|..
T Consensus       149 ~~~--~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~---l~~~pl~~~~  222 (524)
T PRK06188        149 LLA--AAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRF---LMCTPLSHAG  222 (524)
T ss_pred             HHH--hhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEE---EEecCchhhh
Confidence            000  0000000 000111235669999999999999999999999998877766666667666654   3334444433


Q ss_pred             HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       251 ~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      +..+  +.....|+++++.+.  ++|..+++.|+++++|++..+|++++.|++..+.
T Consensus       223 g~~~--~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~  275 (524)
T PRK06188        223 GAFF--LPTLLRGGTVIVLAK--FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL  275 (524)
T ss_pred             hHHH--HHHHHcCCEEEEcCC--CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc
Confidence            3222  333445778888764  4799999999999999999999999999987654

>PRK05691 peptide synthase; Validated

Probab=99.97  E-value=6.2e-30  Score=287.79  Aligned_cols=251  Identities=28%  Similarity=0.441  Sum_probs=189.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++|+++|+.+.+.        .+||+||+++++++|+.|++.        |+++|++ |+++++|+++
T Consensus      1131 ~~l~~~~~~~a~~~p~~~Al~~~~~--------~lTY~eL~~~~~~lA~~L~~~--------gv~~g~~-V~i~~~~s~~ 1193 (4334)
T PRK05691       1131 AWLPELLNEQARQTPERIALVWDGG--------SLDYAELHAQANRLAHYLRDK--------GVGPDVC-VAIAAERSPQ 1193 (4334)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCc--------eEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHH
Confidence            4689999999999999999987553        579999999999999999853        6777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      ++++++|++++|+++||++|.++.+++.++++++++++++++.................++..       .......   
T Consensus      1194 ~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--- 1263 (4334)
T PRK05691       1194 LLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSL-------HLDSWPS--- 1263 (4334)
T ss_pred             HHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeeccc-------cccccCC---
Confidence            999999999999999999999999999999999999999997643221110000000000000       0000000   


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                       ........++++++++|||||||.||||+++|+++.+.+.+....+.+.+.++...+ .++.|..+...+|.++.   .
T Consensus      1264 -~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~-~~~~fd~s~~~~~~~L~---~ 1338 (4334)
T PRK05691       1264 -QAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQK-APISFDVSVWECFWPLI---T 1338 (4334)
T ss_pred             -CCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEe-CCccHHHHHHHHHHHHh---C
Confidence             011112457899999999999999999999999999888777777788888875443 44445544444555554   4


Q ss_pred             CcEEEeC-CCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         263 GGVLIIP-RDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       263 g~~~v~~-~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      |++++++ +....++..+++.|+++++|++.++|+++..|+...
T Consensus      1339 G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 1382 (4334)
T PRK05691       1339 GCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382 (4334)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCc
Confidence            6666665 334568999999999999999999999999887643

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=9.5e-30  Score=241.39  Aligned_cols=263  Identities=25%  Similarity=0.303  Sum_probs=188.1

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      ...++.++|.++++.+|+++|+.+.+.        .+||+||.++++++|+.|.+        .|+++||+ |+++++|+
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~--------~g~~~~~~-V~l~~~~~   66 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRA--------LGVKKGDR-VAVFDWNS   66 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHH--------cCCCCCCE-EEEECCCC
Confidence            345899999999999999999987653        47999999999999999985        36777885 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc---------
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS---------  171 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  171 (311)
                      ++++++++||+++|++++|+++.++.+++.++++.+++++++++........... ........+......         
T Consensus        67 ~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  145 (521)
T PRK06187         67 HEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAAPLAPEV  145 (521)
T ss_pred             HHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccccccccc
Confidence            9999999999999999999999999999999999999999999765432211110 000000000000000         


Q ss_pred             cCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308         172 LSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
                      ....+................+++++++|||||||.||+|.+||+++..........+.+.+.++....   .+..|..+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~  222 (521)
T PRK06187        146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVI---VPMFHVHA  222 (521)
T ss_pred             ccHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEe---CCchHHhh
Confidence            000000000000011122456789999999999999999999999988776666666677777764332   23333332


Q ss_pred             HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       252 ~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      ..+. +.....|++++++..+  ++..+++.|+++++|.++.+|++++.|++..+.
T Consensus       223 ~~~~-~~~l~~G~~~v~~~~~--~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~  275 (521)
T PRK06187        223 WGLP-YLALMAGAKQVIPRRF--DPENLLDLIETERVTFFFAVPTIWQMLLKAPRA  275 (521)
T ss_pred             HHHH-HHHHHhCCEEEecCCC--CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC
Confidence            2221 2234457788887654  799999999999999999999999999887654

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.97  E-value=7.8e-30  Score=243.73  Aligned_cols=266  Identities=18%  Similarity=0.180  Sum_probs=180.0

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.++|+.+++++||++++.....+.    ++++||+||.++++++|++|.+.        |+++||+ |+++++|++++
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~Ty~el~~~v~~la~~L~~~--------g~~~gd~-v~i~~~~~~~~   77 (542)
T PRK06018         11 LCHRIIDHAARIHGNREVVTRSVEGP----IVRTTYAQIHDRALKVSQALDRD--------GIKLGDR-VATIAWNTWRH   77 (542)
T ss_pred             CHHHHHHHHHHhCCCceEEEeeccCC----ceEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCchHH
Confidence            78899999999999999998532211    23689999999999999999864        6777885 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhccc--CC-------
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASL--SH-------  174 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------  174 (311)
                      +++++|++++|++++|++|.++.+++.++++.+++++++++........... ........+.......  ..       
T Consensus        78 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (542)
T PRK06018         78 LEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIA-DKLPSVERYVVLTDAAHMPQTTLKNAV  156 (542)
T ss_pred             HHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHH-hhCCCccEEEEecccccccccCccccc
Confidence            9999999999999999999999999999999999999999764322111100 0000000000000000  00       


Q ss_pred             --CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHH-HH-HHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308         175 --NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN-RL-AWQWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       175 --~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                        .+...............++++++|+|||||||.||||++||++.+. .. ......+.+...++..   ...+++|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~p~~h~~  233 (542)
T PRK06018        157 AYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTML---PVVPLFHAN  233 (542)
T ss_pred             cHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEE---EecCHHHHh
Confidence              0000000000001123567899999999999999999999997432 21 2222344556666543   223333333


Q ss_pred             HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       251 ~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      .... .+.....|++++++.. .+++..+++.++++++|++..+|+++..|+.+.+..
T Consensus       234 ~~~~-~~~~~~~g~~~v~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~  289 (542)
T PRK06018        234 SWGI-AFSAPSMGTKLVMPGA-KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE  289 (542)
T ss_pred             hhHH-HHhhhhcCceEEccCc-CCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc
Confidence            3221 1223345777777642 357999999999999999999999999998876544

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.9e-29  Score=242.72  Aligned_cols=264  Identities=18%  Similarity=0.213  Sum_probs=182.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++++.++..+|+++|+.+.+..     ++.+||+||.++++++|.+|++.       .|+.+||+ |+++++|+++
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~-----~~~~Ty~el~~~~~~la~~L~~~-------~g~~~gd~-V~~~~~n~~e   76 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAE-----QEQTTFAAIGARAAALAHALHDE-------LGITGDQR-VGSMMYNCAE   76 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCc-----eEEEeHHHHHHHHHHHHHHHHHh-------cCCCCCCE-EEEEeCCCHH
Confidence            47899999999999999999875432     23679999999999999999742       26677785 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc-cC-----CCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS-LS-----HNN  176 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~  176 (311)
                      ++++++|++++|++++|++|.++.+++.++++.++++++|++............ .......+...... ..     ...
T Consensus        77 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~  155 (576)
T PRK05620         77 HLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPE  155 (576)
T ss_pred             HHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccc
Confidence            999999999999999999999999999999999999999997643221111100 00000000000000 00     000


Q ss_pred             ---------CCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH--HhhcCCCCCCccceeecchh
Q psy8308         177 ---------IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ--WATFPYSPSERVGAFKTALT  245 (311)
Q Consensus       177 ---------~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  245 (311)
                               ...............++++++++|||||||.||||++||++++......  ...+.+.+.++.   +..++
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~---l~~~p  232 (576)
T PRK05620        156 GIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESF---LCCVP  232 (576)
T ss_pred             ccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeE---EEeCC
Confidence                     0000000001122456899999999999999999999999986543321  223455555543   34455


Q ss_pred             hhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         246 FVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +.|..+... .+.....|+.++++.. .+++..+++.|+++++|++..+|+++..|+.+.
T Consensus       233 l~h~~g~~~-~~~~l~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  290 (576)
T PRK05620        233 IYHVLSWGV-PLAAFMSGTPLVFPGP-DLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHY  290 (576)
T ss_pred             hHHhhhhHH-HHHHHhcCceEEecCC-CCCHHHHHHHHHHhcCceeeecCHHHHHHHHHh
Confidence            555544322 2333445777776542 347999999999999999999999999988764

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.97  E-value=1.2e-29  Score=242.31  Aligned_cols=259  Identities=20%  Similarity=0.235  Sum_probs=175.9

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|.++++.+|+++|+.+.+.        .+||.||.++++++|++|.+.        |+.+||+ |+++++|++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~--------gi~~g~~-V~i~~~~~~   82 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRA--------GYGKDAS-VALYLGNTP   82 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCh
Confidence            45899999999999999999987542        579999999999999999753        6777886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh-h-hhcccccccchhhhhhhccc------C
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN-L-AYKGRTVLSLPQLRLLSASL------S  173 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~------~  173 (311)
                      +|+++++|++++|+++||++|.++.+++.+++++++++++|+++...... . .......  +..........      .
T Consensus        83 ~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  160 (541)
T TIGR03205        83 DHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGL--LDRLIVCEDDNWGKVGTP  160 (541)
T ss_pred             HHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhccc--ceEEEEeccccccccccc
Confidence            99999999999999999999999999999999999999999865311100 0 0000000  00000000000      0


Q ss_pred             ---CCC---CC------CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC----CCC--CC
Q psy8308         174 ---HNN---IP------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP----YSP--SE  235 (311)
Q Consensus       174 ---~~~---~~------~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~----~~~--~~  235 (311)
                         ...   ..      .............++++++++|||||||.||||+++|+++....... ..+.    ...  .+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~  239 (541)
T TIGR03205       161 QAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVE  239 (541)
T ss_pred             ccccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCc
Confidence               000   00      00000001112356889999999999999999999999987543321 1111    111  12


Q ss_pred             ccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         236 RVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +   .+...++.|..+.....+.....|.++++...  ++++.+++.|+++++|++..+|+++..|+++.
T Consensus       240 ~---~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  304 (541)
T TIGR03205       240 R---VICVLPLFHIYALTVILLRSLRRGDLISLHQR--FDVAAVFRDIEEKRATVFPGVPTMWIALANDP  304 (541)
T ss_pred             e---EEEeccHHHHHHHHHHHHHHHhcCCEEEecCC--CCHHHHHHHHHHcCCeEeechHHHHHHHHhCc
Confidence            2   22333444443332322333345677776653  57999999999999999999999999888643

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.97  E-value=4e-29  Score=237.10  Aligned_cols=256  Identities=25%  Similarity=0.309  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.++++..+..+|+++|+.+.+.        .+||+||.++++++|++|+..        |..+||+ |+++++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~--------g~~~~~~-V~i~~~n~~~~   63 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHDR--------TLTYAALSERVLALASGLRGL--------GLARGER-VAIYLDKRLET   63 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHH
Confidence            367889999999999999987542        579999999999999999753        5667775 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc----------cC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS----------LS  173 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  173 (311)
                      +++++||+++|++++|+++.++.+++..+++.++++++|++............ .......+..+...          ..
T Consensus        64 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (515)
T TIGR03098        64 VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP-GCHDLRTLILVGEPAHASEGGGESPS  142 (515)
T ss_pred             HHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhh-cccccceEEEecCcccccCCcccccc
Confidence            99999999999999999999999999999999999999997543221111000 00000000000000          00


Q ss_pred             CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      ......... .........+++++++|||||||.||||++||+++...+......+.+...++...   ..++.|..+..
T Consensus       143 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~~~~  218 (515)
T TIGR03098       143 WPKLLALGD-ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLA---VLPLSFDYGFN  218 (515)
T ss_pred             HHHhhcccc-ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEE---ECchhhHhHHH
Confidence            000000000 00111224578999999999999999999999999877766666666666665433   33444333221


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                       ..+.....|+.+++...  +++..+++.++++++|++..+|+++..|++.
T Consensus       219 -~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  266 (515)
T TIGR03098       219 -QLTTAFYVGATVVLHDY--LLPRDVLKALEKHGITGLAAVPPLWAQLAQL  266 (515)
T ss_pred             -HHHHHHHcCCEEEEcCC--CCHHHHHHHHHHcCCceEecChHHHHHHHhc
Confidence             22334445778877764  4799999999999999999999999998864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.6e-29  Score=239.27  Aligned_cols=258  Identities=17%  Similarity=0.269  Sum_probs=176.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+++...++++|+++|+.+.+.        ++||+||.++++++|..|.+.        |.++||+ |+++++|+++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~--------g~~~g~~-v~i~~~~~~~   69 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAAR--------GVRKGDR-ILVHSRNCNQ   69 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCCCHH
Confidence            4688999999999999999987542        579999999999999999864        6677885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhh--ccc---ccccchh---hhhhhcccCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAY--KGR---TVLSLPQ---LRLLSASLSH  174 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~--~~~---~~~~~~~---~~~~~~~~~~  174 (311)
                      ++++++||+++|++++|+++.++.+++.++++.+++++++++..........  ...   .......   ......... 
T Consensus        70 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (528)
T PRK07470         70 MFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVA-  148 (528)
T ss_pred             HHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHh-
Confidence            9999999999999999999999999999999999999999976432111100  000   0000000   000000000 


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc--CCCCCCccceeecchhhhhhHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF--PYSPSERVGAFKTALTFVDAVSE  252 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
                      ... .   .........++++++|+|||||||.||||+++|+++...........  .....++.   +..+++.|..+.
T Consensus       149 ~~~-~---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~---l~~~p~~~~~~~  221 (528)
T PRK07470        149 RHL-G---ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDAS---LVVAPLSHGAGI  221 (528)
T ss_pred             cCC-C---CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEE---EEeccchhHHHH
Confidence            000 0   00111224568899999999999999999999999865443222211  23344433   233444444432


Q ss_pred             HHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       253 ~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      ..  +.....|+..++.....++++.+++.|+++++|++.++|++++.|.+..+.
T Consensus       222 ~~--~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  274 (528)
T PRK07470        222 HQ--LCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV  274 (528)
T ss_pred             HH--HHHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc
Confidence            21  222233445444433345799999999999999999999999998876543

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.97  E-value=1.6e-29  Score=241.35  Aligned_cols=265  Identities=23%  Similarity=0.260  Sum_probs=185.1

Q ss_pred             hhhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEE
Q psy8308          17 EKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS   96 (311)
Q Consensus        17 ~~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~   96 (311)
                      ...|.+.++.+++.++++  ||++|+++.+.        ++||+||.++++++|++|.+.        |+++||+ |+++
T Consensus        19 ~~~~~~~~~~~~~~~~a~--p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~--------g~~~g~~-V~v~   79 (536)
T PRK10946         19 KGYWQDLPLTDILTRHAA--SDAIAVICGER--------QFSYRELNQASDNLACSLRRQ--------GIKPGDT-ALVQ   79 (536)
T ss_pred             cceecCccHHHHHHHhhC--CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEE
Confidence            457777899999999887  99999997542        579999999999999999753        6777885 9999


Q ss_pred             eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh----hhhhcccccccchhhhhhhc--
Q psy8308          97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE----NLAYKGRTVLSLPQLRLLSA--  170 (311)
Q Consensus        97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--  170 (311)
                      ++|+++|+++++|++++|++++++++.....++.++++.+++++++++......    ..............+.....  
T Consensus        80 ~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  159 (536)
T PRK10946         80 LGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG  159 (536)
T ss_pred             CCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC
Confidence            999999999999999999998888888889999999999999999986542100    00000000000000000000  


Q ss_pred             ccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308         171 SLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      .....................++++++++|||||||.||||++||+++..++......+.+.++++.   +..+++.|.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~---l~~~p~~h~~  236 (536)
T PRK10946        160 EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRY---LCALPAAHNY  236 (536)
T ss_pred             CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceE---EEecCccccc
Confidence            0000000000000001122356899999999999999999999999998877766666677776654   3344444443


Q ss_pred             HHHH-HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         251 SEIW-GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       251 ~~~~-~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ...+ ..+.....|+++++...  +++..+++.|+++++|++..+|+++..|+.+.
T Consensus       237 ~~~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~  290 (536)
T PRK10946        237 PMSSPGALGVFLAGGTVVLAPD--PSATLCFPLIEKHQVNVTALVPPAVSLWLQAI  290 (536)
T ss_pred             cchhhhHHHHhhcCcEEEECCC--CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhh
Confidence            3221 22233345777777654  47899999999999999999999999998763

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.97  E-value=3.2e-29  Score=237.18  Aligned_cols=255  Identities=22%  Similarity=0.300  Sum_probs=181.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .+|.+++...+ .+|+++|+.+.+.       +.+||+||.++++++|++|++.        |+++||+ |+++++|+++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~--------g~~~gd~-v~i~~~~~~e   65 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVAL--------GVKPGDR-VAVQVEKSPE   65 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHH
Confidence            47889999989 9999999986432       2679999999999999999853        6777886 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc---cc-cccchhhhhhhcccCCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG---RT-VLSLPQLRLLSASLSHNNIP  178 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~  178 (311)
                      ++++++|++++|++++|+++.++.+++.++++.+++++++++............   .. +..++...  ....  .+..
T Consensus        66 ~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~  141 (504)
T PRK07514         66 ALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADG--TGSL--LEAA  141 (504)
T ss_pred             HHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCC--cccH--HHhh
Confidence            999999999999999999999999999999999999999997653321111100   00 10000000  0000  0000


Q ss_pred             CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhH
Q psy8308         179 GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLL  258 (311)
Q Consensus       179 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
                      .............++++++++|||||||.||||++||+++..........+...+.++..   ...+++|..+.++..+.
T Consensus       142 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l---~~~p~~~~~g~~~~~~~  218 (504)
T PRK07514        142 AAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLI---HALPIFHTHGLFVATNV  218 (504)
T ss_pred             hhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEE---EecchHHHHHHHHHHHH
Confidence            000000111224578999999999999999999999999988766655566677666542   33444444443333334


Q ss_pred             hhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       259 ~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ....|+++++...  .++..+++.+  +++|++..+|+++..|++..
T Consensus       219 ~l~~G~~~~~~~~--~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~  261 (504)
T PRK07514        219 ALLAGASMIFLPK--FDPDAVLALM--PRATVMMGVPTFYTRLLQEP  261 (504)
T ss_pred             HHhcCcEEEECCC--CCHHHHHHHH--HhheeeecHHHHHHHHHcCC
Confidence            4445777777664  4799999999  47999999999999888754

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.97  E-value=5.6e-29  Score=237.87  Aligned_cols=261  Identities=19%  Similarity=0.179  Sum_probs=176.7

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+.|++.++.+|+++|+.+.+.        .+||+||.++++++|.+|.+.        |+.+||+ |+++++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~--------g~~~g~~-v~i~~~~~~~   80 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARR--------GIGRGDT-VAVLLPNIPA   80 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCchH
Confidence            4677889999999999999987542        579999999999999999754        6677785 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc----ccccccchhhh-hhhc-----cc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK----GRTVLSLPQLR-LLSA-----SL  172 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~-----~~  172 (311)
                      ++++++|++++|++++|+++.++.+++.+++++++++.++++...........    ......++... ....     ..
T Consensus        81 ~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (545)
T PRK08162         81 MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL  160 (545)
T ss_pred             HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccc
Confidence            99999999999999999999999999999999999999999765432111100    00000000000 0000     00


Q ss_pred             CCCCCC-CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308         173 SHNNIP-GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
                      ...... ............+.++.++|+|||||||.||||+++|+++..+.......+.+...++.   +..++++|..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~---l~~~pl~h~~~  237 (545)
T PRK08162        161 DYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVY---LWTLPMFHCNG  237 (545)
T ss_pred             cHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCee---EeccCcHhhhh
Confidence            000000 00000000111234578999999999999999999999877655444444455555543   23334444433


Q ss_pred             HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       252 ~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..+..+... .|+..++...  +++..+++.|+++++|++..+|+++..|+++..
T Consensus       238 ~~~~~~~~~-~~g~~~~~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~  289 (545)
T PRK08162        238 WCFPWTVAA-RAGTNVCLRK--VDPKLIFDLIREHGVTHYCGAPIVLSALINAPA  289 (545)
T ss_pred             HHHHHHHHH-HccEEEEeCC--CCHHHHHHHHHHcCCeEEEechHHHHHHHhCcc
Confidence            322222222 2344444443  579999999999999999999999999987543

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=4.7e-29  Score=238.22  Aligned_cols=267  Identities=18%  Similarity=0.165  Sum_probs=179.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++++..++++|+++++.+...+ +   ++.+||.||.++++++|++|.+.        |+.+||+ |+++++|+++
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~---~~~~Ty~el~~~~~~~a~~L~~~--------g~~~~d~-v~i~~~~~~~   76 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEG-D---IHRYTYRDCERRAKQLAQALAAL--------GVEPGDR-VGTLAWNGYR   76 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccC-c---ceEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcHH
Confidence            36889999999999999888754221 1   23689999999999999999864        6677885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc----------c
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS----------L  172 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  172 (311)
                      |+++++||+++|++++|++|.++++++.++++.+++++++++.+......... ...............          .
T Consensus        77 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (539)
T PRK07008         77 HLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALA-PQCPNVKGWVAMTDAAHLPAGSTPLL  155 (539)
T ss_pred             HHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHH-hhCCCceEEEEEccCCccccCCcccc
Confidence            99999999999999999999999999999999999999998764322111100 000000000000000          0


Q ss_pred             CCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH--HHhhcCCCCCCccceeecchhhhhhH
Q psy8308         173 SHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW--QWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      ...+..............+++++++++|||||||.||||++||++++.+...  ....+.+.+.++..   ...+++|..
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h~~  232 (539)
T PRK07008        156 CYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVL---PVVPMFHVN  232 (539)
T ss_pred             cHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEE---ecCchHHhh
Confidence            0000000000000111235678999999999999999999999998654322  12234455555543   223333332


Q ss_pred             HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       251 ~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      ...+ .+.....|++++++.. .++++.+++.|+++++|++..+|+++.+|+++.+..
T Consensus       233 ~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~  288 (539)
T PRK07008        233 AWGL-PYSAPLTGAKLVLPGP-DLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA  288 (539)
T ss_pred             hHHH-HHHHHhcCceEEEecC-CcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc
Confidence            2211 1222334777776532 357999999999999999999999999999876543

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=4.7e-29  Score=239.36  Aligned_cols=266  Identities=16%  Similarity=0.196  Sum_probs=178.6

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.+++.++++++|+++|+.+.+.        .+||+||.++++++|++|.+.       .|+++||+ |+++++|+++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~-------~gi~~gd~-V~i~~~n~~e   87 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQH-------TDLVPGDR-IAVQMPNVLQ   87 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHh-------cCCCCCCE-EEEECCCCHH
Confidence            4788999999999999999986432        579999999999999999752       26677885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhh-cccc---c---------ccchhhhh--
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAY-KGRT---V---------LSLPQLRL--  167 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~-~~~~---~---------~~~~~~~~--  167 (311)
                      |+++++||+++|++++|++|.++.+++.++++.++++++++++......... ....   .         ........  
T Consensus        88 ~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
T PRK12492         88 YPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNT  167 (562)
T ss_pred             HHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhccc
Confidence            9999999999999999999999999999999999999999865321111000 0000   0         00000000  


Q ss_pred             ----hhcccCCCCCCC---------C-cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC---
Q psy8308         168 ----LSASLSHNNIPG---------E-SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP---  230 (311)
Q Consensus       168 ----~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~---  230 (311)
                          ............         . ............+++++|+|||||||.||||++||+++..+.......+.   
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~  247 (562)
T PRK12492        168 VVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLG  247 (562)
T ss_pred             ccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccc
Confidence                000000000000         0 00000111235678999999999999999999999998766544333222   


Q ss_pred             ------CCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         231 ------YSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                            +...+.  .++..+++.|.++..+..+.....|...++... ..++..+++.|+++++|++..+|+++..|+++
T Consensus       248 ~~~~~~~~~~~~--~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~  324 (562)
T PRK12492        248 PDGQPLMKEGQE--VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITN-PRDIPGFIKELGKWRFSALLGLNTLFVALMDH  324 (562)
T ss_pred             ccccccccCCCe--EEEEecchHHHHHHHHHHHHHhhcCceEEEecC-CcCHHHHHHHHHHhCCceeeCcHHHHHHHHhC
Confidence                  111121  133445556655544333333344555554332 24789999999999999999999999999886


Q ss_pred             Hhh
Q psy8308         305 LKM  307 (311)
Q Consensus       305 ~~~  307 (311)
                      .+.
T Consensus       325 ~~~  327 (562)
T PRK12492        325 PGF  327 (562)
T ss_pred             cCc
Confidence            543

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.9e-29  Score=242.87  Aligned_cols=259  Identities=20%  Similarity=0.291  Sum_probs=171.2

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCc-cccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDK-DTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~-~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      ++.++|++++..+|+++|+.+.+.+. .....+.+||+||.++++++|++|.+.        | .+||+ |+++++|+++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~--------g-~~gd~-V~l~~~n~~~   71 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRH--------G-STGDR-AVILAPQGLE   71 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHh--------C-CCCCE-EEEEcCCccc
Confidence            46788999999999999998643110 001124789999999999999999853        3 46775 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCC---CCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc-ccccchhhhhhhcccCCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDV---TAPEQRVKHILNEARPLLVIAENEQACENLAYKGR-TVLSLPQLRLLSASLSHNNIP  178 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~---~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  178 (311)
                      |+++++||+++|+++||+++   .++.+++.++++++++++++++............. .......+.... ....... 
T Consensus        72 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  149 (578)
T PRK05850         72 YIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD-LLDLDSP-  149 (578)
T ss_pred             HHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec-ccccccC-
Confidence            99999999999999999997   55789999999999999999976533221111000 000000000000 0000000 


Q ss_pred             CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc-C-----CCCCCccceeecchhhhhhHHH
Q psy8308         179 GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF-P-----YSPSERVGAFKTALTFVDAVSE  252 (311)
Q Consensus       179 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~  252 (311)
                      .    ........++++++|+|||||||.||||++||+++..++......+ .     ....++   .+..++++|.++.
T Consensus       150 ~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~pl~h~~g~  222 (578)
T PRK05850        150 R----GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTT---VVSWLPFYHDMGL  222 (578)
T ss_pred             C----ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcce---EEEECCCCCCchh
Confidence            0    0011223568999999999999999999999999987654433222 1     122333   3344555555554


Q ss_pred             HHHhhHhhcCCcEEEeCCCC--CCChhHHHHHHhhcCceEEEeChHHHHHHH
Q psy8308         253 IWGPLLSARCGGVLIIPRDV--TRNPDQLIGTLEKYKVERLVLVPSLLRSML  302 (311)
Q Consensus       253 ~~~~~~~~~~g~~~v~~~~~--~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll  302 (311)
                      .+..+.....|+.+++....  ..+|..+++.+++++++.+ .+|+.+..++
T Consensus       223 ~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~  273 (578)
T PRK05850        223 VLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELA  273 (578)
T ss_pred             HHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHH
Confidence            44444445557777765432  2379999999999999865 5565544433

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.97  E-value=4.8e-29  Score=235.88  Aligned_cols=249  Identities=26%  Similarity=0.359  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.+.+.+.+..+|+++|+.+.+.        ++||+||.++++++|+.|.+.        |+.+||+ |+++++|+.+|
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~--------g~~~~~~-V~i~~~~~~~~   63 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKR--------ILPKKSP-IIVYGHMEPHM   63 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHh--------CCCCCCe-EEEEeCCCHHH
Confidence            367889999999999999986542        679999999999999999753        5667775 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML  183 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (311)
                      +++++||+++|++++|+++.++.+++.++++.+++++++++.........   .....+........    ...+     
T Consensus        64 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~-----  131 (502)
T TIGR01734        64 LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG---TQIITLSALEQAET----SGGP-----  131 (502)
T ss_pred             HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC---CceEEchHhhhhhh----hcCC-----
Confidence            99999999999999999999999999999999999999997543221111   11111111000000    0000     


Q ss_pred             CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308         184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG  263 (311)
Q Consensus       184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (311)
                      ........+++.++++|||||||.||||+++|+++.....+....+.....+...   ...++.|.... +..+.....|
T Consensus       132 ~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l---~~~p~~~~~~~-~~~~~~l~~G  207 (502)
T TIGR01734       132 VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFL---NQAPFSFDLSV-MDLYPCLASG  207 (502)
T ss_pred             ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEE---eecCceechhH-HHHHHHHHCC
Confidence            0001123467899999999999999999999999988777666666666666532   22333333322 2233334457


Q ss_pred             cEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         264 GVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       264 ~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +++++... ...++..+++.++++++|.+..+|+++.+++.+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~  250 (502)
T TIGR01734       208 GTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDP  250 (502)
T ss_pred             CEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcc
Confidence            77776543 2347899999999999999999999998877653

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.97  E-value=2.2e-29  Score=239.71  Aligned_cols=246  Identities=15%  Similarity=0.128  Sum_probs=166.8

Q ss_pred             HHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH
Q psy8308          25 LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI  104 (311)
Q Consensus        25 l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~  104 (311)
                      +.+.++++++++|+++|+.+.+..    .|+++||+||.++++++|++|.+.          ++||+ |+++++|+++|+
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~----~~~~~ty~el~~~~~~lA~~L~~~----------~~g~~-V~l~~~~~~e~~   68 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESG----LWRRHPWPEVHGRAENVAARLLDR----------DRPGA-VGLVGEPTVELV   68 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCC----cceeecHHHHHHHHHHHHHHHHhc----------CCCCe-EEEEcCCCHHHH
Confidence            678889999999999999876532    245789999999999999999742          45775 999999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCC--------CcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCC
Q psy8308         105 QVLLAVWKAGAAYLPLDVT--------APEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN  176 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~--------~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (311)
                      ++++|++++|++++ +++.        ...+++.+++++++++++|++........ .....+ .+...   .. .  ..
T Consensus        69 ~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~-~~~~~---~~-~--~~  139 (525)
T PRK05851         69 AAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLR-AVDSSV-TVHDL---AT-A--AH  139 (525)
T ss_pred             HHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHH-Hhhccc-ccccc---cc-c--cc
Confidence            99999999999865 4443        23456677899999999999654321111 000000 00000   00 0  00


Q ss_pred             CCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCC-CCCccceeecchhhhhhHHHHHH
Q psy8308         177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYS-PSERVGAFKTALTFVDAVSEIWG  255 (311)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                        ...  ........++++++|+|||||||.||||++||+++...+......+.+. +.++..   ...++.|..+.. .
T Consensus       140 --~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l---~~~pl~h~~g~~-~  211 (525)
T PRK05851        140 --TNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGC---SWLPLYHDMGLA-F  211 (525)
T ss_pred             --ccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEE---EcCCCccCccHH-H
Confidence              000  0000123578999999999999999999999999988776666666776 666543   334444433321 2


Q ss_pred             hhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHH
Q psy8308         256 PLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSML  302 (311)
Q Consensus       256 ~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll  302 (311)
                      .+.....|+++++.+.  +..+|..+++.|+++++|.+..+|.++..|.
T Consensus       212 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~  260 (525)
T PRK05851        212 LLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIG  260 (525)
T ss_pred             HHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHH
Confidence            2334445777777652  3336889999999999998866555554443

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=5.7e-29  Score=236.37  Aligned_cols=248  Identities=21%  Similarity=0.235  Sum_probs=176.0

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.+.+.+++..+|+++|+.+.+.        .+||+|+.++++++|+.|++.        |+++||+ |+++++|++
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~--------gi~~g~~-V~i~~~~~~   96 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRD--------GVAPGRA-VGVMCRNGR   96 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhc--------CCCCCCE-EEEECCCCH
Confidence            46889999999999999999986532        579999999999999999853        6777885 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCc
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      +++.+++|++++|+++||+++.++.+++.++++.++++++++++....... .....+..++.      ..  .....  
T Consensus        97 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~------~~--~~~~~--  165 (516)
T PRK13383         97 GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIA-GADDAVAVIDP------AT--AGAEE--  165 (516)
T ss_pred             HHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHH-hhhcceEEecc------ch--hhhhc--
Confidence            999999999999999999999999999999999999999999764332111 11011110100      00  00000  


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHH--HHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRL--AWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                         ....+...++.++++|||||||.||||++||+......  ......+.+.+.++..   ..++++|..+..+ .+..
T Consensus       166 ---~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~pl~h~~g~~~-~~~~  238 (516)
T PRK13383        166 ---SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRIS---VAMPMFHGLGLGM-LMLT  238 (516)
T ss_pred             ---CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEE---EecCCcchhhHHH-HHHH
Confidence               00001123566899999999999999999998432111  1112233455555542   2344444433322 2333


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ...|+.++....  ++++.+++.++++++|.+..+|+++..|++..+
T Consensus       239 l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  283 (516)
T PRK13383        239 IALGGTVLTHRH--FDAEAALAQASLHRADAFTAVPVVLARILELPP  283 (516)
T ss_pred             HhcCCEEEECCC--CCHHHHHHHHHHhCCcEEEecHHHHHHHHhccc
Confidence            445777777653  579999999999999999999999999987543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=6.9e-29  Score=237.93  Aligned_cols=266  Identities=22%  Similarity=0.244  Sum_probs=177.9

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++|+++|+++.+.        .+||+||.++++++|++|.+.        |+++||+ |+++++|+++
T Consensus        23 ~~i~~~l~~~a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~--------gi~~gd~-V~i~~~n~~~   85 (557)
T PRK07059         23 PSLADLLEESFRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSR--------GLAKGAR-VAIMMPNVLQ   85 (557)
T ss_pred             CCHHHHHHHHHHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCCHH
Confidence            5799999999999999999987542        579999999999999999864        6777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc-c---ccccch--hhhh---------
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG-R---TVLSLP--QLRL---------  167 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~-~---~~~~~~--~~~~---------  167 (311)
                      ++++++|++++|++++|++|.++.+++.++++.++++++++++........... .   .+....  ....         
T Consensus        86 ~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (557)
T PRK07059         86 YPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFV  165 (557)
T ss_pred             HHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccc
Confidence            999999999999999999999999999999999999999986543221110000 0   000000  0000         


Q ss_pred             ---hhcccCCCCCCC----------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc----C
Q psy8308         168 ---LSASLSHNNIPG----------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF----P  230 (311)
Q Consensus       168 ---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~----~  230 (311)
                         ..........+.          ............++++++|+|||||||.||||+++|+++..+........    .
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~  245 (557)
T PRK07059        166 VRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFE  245 (557)
T ss_pred             cccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccc
Confidence               000000000000          00000111224578999999999999999999999999876543322111    1


Q ss_pred             CCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         231 YSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .........++..+++.|.+......+.....|+..++.... .++..+++.|+++++|.+..+|+++..|+.+.+
T Consensus       246 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~  320 (557)
T PRK07059        246 KKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNP-RDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD  320 (557)
T ss_pred             ccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCC-cCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC
Confidence            111111112334455555544333333333345554443322 368899999999999999999999999887654

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.97  E-value=9.8e-29  Score=233.11  Aligned_cols=242  Identities=21%  Similarity=0.271  Sum_probs=173.8

Q ss_pred             HHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHH
Q psy8308          30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLA  109 (311)
Q Consensus        30 ~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la  109 (311)
                      +.++..+||++|+.+...+      +.+||+||.++++++|++|.+.        |+.+||+ |+++++|+++|+++++|
T Consensus         2 ~~~a~~~p~~~a~~~~~~~------~~~ty~~l~~~v~~~a~~l~~~--------g~~~~~~-v~i~~~~~~~~~~~~la   66 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALG------RRWTYAELDALVGRLAAVLRRR--------GCVDGER-LAVLARNSVWLVALHFA   66 (488)
T ss_pred             chhhhhCCCceEEEecCCC------cEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHHHHHHHH
Confidence            4567889999999863221      2579999999999999999853        6677775 99999999999999999


Q ss_pred             HHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCC
Q psy8308         110 VWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNN  189 (311)
Q Consensus       110 ~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (311)
                      ++++|++++|+++.++++++.++++.++++++|+++.....     .......+.+..   ... ..    .  ......
T Consensus        67 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-----~~~~~~~~~~~~---~~~-~~----~--~~~~~~  131 (488)
T PRK09088         67 CARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAG-----RTDVEDLAAFIA---SAD-AL----E--PADTPS  131 (488)
T ss_pred             HHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc-----cccccchhhhhh---hcc-cc----c--cccCCC
Confidence            99999999999999999999999999999999986543211     000111111110   000 00    0  000112


Q ss_pred             CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeC
Q psy8308         190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIP  269 (311)
Q Consensus       190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  269 (311)
                      ..++++++++|||||||.||||.+||+++................++.   +...++.|.++.+.........|+++++.
T Consensus       132 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~---l~~~pl~~~~g~~~~~~~~l~~g~~~~~~  208 (488)
T PRK09088        132 IPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSF---LCDAPMFHIIGLITSVRPVLAVGGSILVS  208 (488)
T ss_pred             CCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEE---EEecchHHHHHHHHHHHHHHhcCCEEEEc
Confidence            346789999999999999999999999987665544444445555543   34455555555433333344457788877


Q ss_pred             CCCCCChhHHHHHHh--hcCceEEEeChHHHHHHHHHHh
Q psy8308         270 RDVTRNPDQLIGTLE--KYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       270 ~~~~~~p~~~~~~i~--~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..  +++..++..+.  ++++|++..+|+++.+|..+..
T Consensus       209 ~~--~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~  245 (488)
T PRK09088        209 NG--FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG  245 (488)
T ss_pred             CC--CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC
Confidence            64  36889999886  4899999999999998887543

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=7.5e-29  Score=238.00  Aligned_cols=263  Identities=19%  Similarity=0.245  Sum_probs=178.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      +++.+++.+.+..+|+++|+++.+.        .+||+||.++++++|++|.+.        |+++||+ |+++++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~--------gv~~gd~-V~i~~~~~~~   86 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKL--------GVEKGDR-VAIMLPNCPQ   86 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCChH
Confidence            4789999999999999999987543        579999999999999999753        6677885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc----cccc--cchhhhhhhc------
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG----RTVL--SLPQLRLLSA------  170 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~------  170 (311)
                      ++++++||+++|++++|+||.++.+++.++++.++++.+++++...........    ..+.  ..........      
T Consensus        87 ~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (563)
T PRK06710         87 AVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF  166 (563)
T ss_pred             HHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccch
Confidence            999999999999999999999999999999999999999997543211100000    0000  0000000000      


Q ss_pred             --c--------cC-------CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh-hcCCC
Q psy8308         171 --S--------LS-------HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYS  232 (311)
Q Consensus       171 --~--------~~-------~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-~~~~~  232 (311)
                        .        ..       ...................+++++++|||||||.||||++||+++..+...... .+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  246 (563)
T PRK06710        167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCK  246 (563)
T ss_pred             hhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCC
Confidence              0        00       000000000000001123478999999999999999999999998754333222 22333


Q ss_pred             CCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         233 PSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..+..  ++...+++|.++...........|+.+++...  +++..+++.|+++++|++.++|+++..|+.+..
T Consensus       247 ~~~~~--~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  316 (563)
T PRK06710        247 EGEEV--VLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK--FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL  316 (563)
T ss_pred             CCCce--EEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC--CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc
Confidence            33322  23334445554433323334445777777653  478999999999999999999999999887543

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.1e-28  Score=249.74  Aligned_cols=258  Identities=16%  Similarity=0.177  Sum_probs=175.2

Q ss_pred             hhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          21 KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        21 ~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      ...++.++|.++++++||++|+.+.+.        ++||+||.++++++|++|++.        |+++||+ |+|+++|+
T Consensus       445 ~~~sl~~ll~~~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~--------Gv~~Gd~-VaI~~~n~  507 (994)
T PRK07868        445 TRISLGRIIAEQARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAV--------GVRQGDR-VGVLMETR  507 (994)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCC
Confidence            345789999999999999999987542        579999999999999999864        6778886 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhh----hh---hcccC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLR----LL---SASLS  173 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~  173 (311)
                      ++|+++++||+++|+++||+||.   +++.+++++++++++|++......... ....+..++...    ..   .....
T Consensus       508 ~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~-~~~~iiv~~~~~~~~~~~~~~~~~~~  583 (994)
T PRK07868        508 PSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ-LPGRVLVLGGGESRDLDLPDDADVID  583 (994)
T ss_pred             HHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh-cCceEEEecCCccccccCCcchhhhh
Confidence            99999999999999999999995   689999999999999997543322111 011111110000    00   00000


Q ss_pred             CCCCCCCc-ccC--CCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308         174 HNNIPGES-MLH--SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       174 ~~~~~~~~-~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      ........ ...  .......++|+++|+|| ||||.|||+.++|.+...........+.+.+.++.   +...+++|..
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~---L~~~Pl~h~~  659 (994)
T PRK07868        584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTV---YCLTPLHHES  659 (994)
T ss_pred             hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeE---EEecChHHHh
Confidence            00000000 000  00011235789999999 68888888888887665443333344566666654   3344555544


Q ss_pred             HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       251 ~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      +.....+.....|.+++++++  ++++.+++.|++|+||+++.+|++++.|++..
T Consensus       660 gl~~~l~~~l~gG~~vvl~~~--~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~  712 (994)
T PRK07868        660 GLLVSLGGAVVGGSRIALSRG--LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP  712 (994)
T ss_pred             HHHHHHHHHhccceEEEecCC--CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc
Confidence            432222222334666777664  58999999999999999999999999998754

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2e-28  Score=233.03  Aligned_cols=255  Identities=24%  Similarity=0.324  Sum_probs=170.2

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      +|.+++.+.++++||++|+.+.+.        .+||+||.++++++|+.|.+.        |+++||+ |+++++|+++|
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~--------g~~~~~~-v~v~~~n~~~~   66 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQ--------GLGPGDH-VGIYARNRIEY   66 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHH
Confidence            688999999999999999987542        679999999999999999753        6667775 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCC----CCC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNN----IPG  179 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  179 (311)
                      +++++|++++|++++|+++.++.+++.++++.+++++++++............ .......+..+........    ...
T Consensus        67 ~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (533)
T PRK07798         67 VEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGNDLLPGAVDY  145 (533)
T ss_pred             HHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCcccccCCccccH
Confidence            99999999999999999999999999999999999999997643222111100 0000000000000000000    000


Q ss_pred             Cc----ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc---------CC------CCCCcccee
Q psy8308         180 ES----MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF---------PY------SPSERVGAF  240 (311)
Q Consensus       180 ~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~---------~~------~~~~~~~~~  240 (311)
                      ..    ............+.++|+|||||||.||||++||+++...........         .+      ...++   .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  222 (533)
T PRK07798        146 EDALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMR---R  222 (533)
T ss_pred             HHHHhccCCcCCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCce---E
Confidence            00    000000111233557999999999999999999999875433221111         00      12222   2


Q ss_pred             ecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHH
Q psy8308         241 KTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRS  300 (311)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~  300 (311)
                      +...++.|..+. +..+.....|+++++.....+++..+++.|+++++|.+..+|..+..
T Consensus       223 ~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~  281 (533)
T PRK07798        223 FPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMAR  281 (533)
T ss_pred             EEecchhhhhhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHH
Confidence            333344443332 23344445577777766324589999999999999999999876644

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=8.1e-29  Score=255.43  Aligned_cols=261  Identities=20%  Similarity=0.203  Sum_probs=180.7

Q ss_pred             hhHHHHHHHHHhhCC-CceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          23 KQLHRIFEKNAALSP-DNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        23 ~~l~~~~~~~a~~~p-d~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      .++.+.+.++++++| +++|+.+.+.       +++||+||.++++++|+.|+         .|+++||+ |+++++|++
T Consensus       631 ~~~~~~l~~~~~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~---------~g~~~gd~-V~i~~~n~~  693 (1140)
T PRK06814        631 RTLFEALIEAAKIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLK---------KNTPPGEN-VGVMLPNAN  693 (1140)
T ss_pred             CCHHHHHHHHHHHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHH---------hcCCCCCe-EEEEcCCch
Confidence            467778888888776 5677764321       25799999999999999985         25677886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhh-----hhc--ccccccchhhhhhhccc-C
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENL-----AYK--GRTVLSLPQLRLLSASL-S  173 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~-~  173 (311)
                      +++++++|++++|++++|+||.++++++.+++++++++++|+++.......     ...  ...+...+......... .
T Consensus       694 ~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  773 (1140)
T PRK06814        694 GAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADK  773 (1140)
T ss_pred             HHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHH
Confidence            999999999999999999999999999999999999999999754321100     000  00111111000000000 0


Q ss_pred             CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      ..............+...++|+++++|||||||.||||++||+++..+.......+...++++.   +..+|++|..+..
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~---l~~~pl~h~~g~~  850 (1140)
T PRK06814        774 IKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKV---FNALPVFHSFGLT  850 (1140)
T ss_pred             HHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEE---EEecchHHHHHHH
Confidence            0000000000000112457899999999999999999999999998777666666677777764   3445566655544


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      +..+.....|+++++.+.. .+++.+.+.++++++|++..+|+++..+.+.
T Consensus       851 ~~~~~~l~~G~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~  900 (1140)
T PRK06814        851 GGLVLPLLSGVKVFLYPSP-LHYRIIPELIYDTNATILFGTDTFLNGYARY  900 (1140)
T ss_pred             HHHHHHHHcCCEEEEecCc-ccHHHHHHHHHhcCCEEEEecHHHHHHHHhh
Confidence            4444445567777765432 3567889999999999999999999888765

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.97  E-value=1.1e-28  Score=236.69  Aligned_cols=265  Identities=18%  Similarity=0.220  Sum_probs=177.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++.+|+++|+++.+.        .+||+||.++++++|+.|++.       .|+++||+ |+++++|+++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~-------~g~~~g~~-V~i~~~~~~~   88 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGE-------LQLKKGDR-VALMMPNCLQ   88 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHH-------hCCCCCCE-EEEECCCCHH
Confidence            4688999999999999999986542        579999999999999999632       36777885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-cc---ccccch--hh-----------
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-GR---TVLSLP--QL-----------  165 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-~~---~~~~~~--~~-----------  165 (311)
                      ++++++|++++|++++|++|.++.+++.+++++++++++|+++.......... ..   .+....  ..           
T Consensus        89 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (560)
T PRK08751         89 YPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNF  168 (560)
T ss_pred             HHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhh
Confidence            99999999999999999999999999999999999999999754322111100 00   000000  00           


Q ss_pred             -h-hhhcccCCCCCCC----------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC---
Q psy8308         166 -R-LLSASLSHNNIPG----------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP---  230 (311)
Q Consensus       166 -~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~---  230 (311)
                       . ...........+.          ............++++++++|||||||.||||++||+++..+.......+.   
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  248 (560)
T PRK08751        169 VVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG  248 (560)
T ss_pred             hhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc
Confidence             0 0000000000000          000000111235688999999999999999999999998766554433332   


Q ss_pred             -CCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         231 -YSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                       +.+.+..  ++...++.|..+..+..+.....|+..++..+ .+++..+++.|+++++|++..+|+++..+++...
T Consensus       249 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  322 (560)
T PRK08751        249 KLEEGCEV--VITALPLYHIFALTANGLVFMKIGGCNHLISN-PRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG  322 (560)
T ss_pred             ccCCCCce--EEEecChHHHHHHHHhhhhHhhccceEEEecC-cCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC
Confidence             2222222  23334444444433322333333444444332 2478999999999999999999999999887543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.96  E-value=5.4e-28  Score=228.60  Aligned_cols=250  Identities=26%  Similarity=0.376  Sum_probs=180.1

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.+.+++++..+|+++|+.+.+.        .+||+||.++++++|..|.+.        |+.+||+ |+++++|+.+|
T Consensus         3 ~~~~~l~~~a~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~--------g~~~~~~-v~~~~~~~~~~   65 (503)
T PRK04813          3 DIIETIEEFAQTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSL--------KLPDKSP-IIVFGHMSPEM   65 (503)
T ss_pred             hHHHHHHHHHHhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCCCHHH
Confidence            467889999999999999886542        579999999999999999854        5667775 89999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML  183 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (311)
                      +++++|++++|++++|+++.++.+++.++++.++++++++.+....   ..........+.+...   ..    ..  ..
T Consensus        66 ~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~----~~--~~  133 (503)
T PRK04813         66 LATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL---EILGIPVITLDELKDI---FA----TG--NP  133 (503)
T ss_pred             HHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc---cccCCcEEehHHhhhh---hh----cc--cc
Confidence            9999999999999999999999999999999999999999764311   0001111111111000   00    00  00


Q ss_pred             CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308         184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG  263 (311)
Q Consensus       184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (311)
                      ........++++++++|||||||.||||.+||+++..........+.+...++..   ...++.+.... +..+..+..|
T Consensus       134 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~-~~~~~~l~~g  209 (503)
T PRK04813        134 YDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFL---NQAPYSFDLSV-MDLYPTLASG  209 (503)
T ss_pred             ccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceee---ecCCcchhHhH-HHHHHHHhcC
Confidence            0011123567899999999999999999999999988776666666666655532   22333333222 2222333446


Q ss_pred             cEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         264 GVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       264 ~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +.+++... ...++..+++.++++++|++..+|+++..++....
T Consensus       210 ~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~  253 (503)
T PRK04813        210 GTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS  253 (503)
T ss_pred             CEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc
Confidence            66666543 33579999999999999999999999988776543

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3e-28  Score=225.34  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=159.0

Q ss_pred             cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHH
Q psy8308          56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNE  135 (311)
Q Consensus        56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~  135 (311)
                      .+||+||.++++++|++|.         .+.++|++ |+++++|+++|+.+++|++++|++++|+++..+.+++.+++++
T Consensus         8 ~~ty~el~~~~~~~a~~l~---------~~~~~g~~-V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~   77 (414)
T PRK08308          8 EYSKSDFDLRLQRYEEMEQ---------FQEAAGNR-FAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKR   77 (414)
T ss_pred             eecHHHHHHHHHHHHHHHH---------cCCCCCCE-EEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHh
Confidence            6799999999999999985         24566775 9999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecc
Q psy8308         136 ARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH  215 (311)
Q Consensus       136 s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th  215 (311)
                      ++++++++++...         .   ..            ..          ....++++++++|||||||.||||++||
T Consensus        78 ~~~~~~i~~~~~~---------~---~~------------~~----------~~~~~~~~~~i~~TSGtTG~PKgv~~s~  123 (414)
T PRK08308         78 AGCHGLLYGESDF---------T---KL------------EA----------VNYLAEEPSLLQYSSGTTGEPKLIRRSW  123 (414)
T ss_pred             CCCCEEEecCccc---------c---cc------------cC----------CCCCCCCceEEEECCCCCCCCcEEEEeh
Confidence            9999999854210         0   00            00          0124678999999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeCh
Q psy8308         216 EVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVP  295 (311)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP  295 (311)
                      +++..+.......+.....++.   +...++.|.++.....+.....|+++++...  ++|..+++.|+++++|+++.+|
T Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~---~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~P  198 (414)
T PRK08308        124 TEIDREIEAYNEALNCEQDETP---IVACPVTHSYGLICGVLAALTRGSKPVIITN--KNPKFALNILRNTPQHILYAVP  198 (414)
T ss_pred             HhHHHHHHHHHHhhCCCcccEE---EEecCcHHHHHHHHHHHHHHHcCCEEEecCC--CCHHHHHHHHHHhCCeEEEcCH
Confidence            9998877666666666666653   3345555555544444444556777777654  4799999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy8308         296 SLLRSMLMFL  305 (311)
Q Consensus       296 ~~~~~ll~~~  305 (311)
                      +++.+|.+..
T Consensus       199 ~~~~~l~~~~  208 (414)
T PRK08308        199 LMLHILGRLL  208 (414)
T ss_pred             HHHHHHHhcC
Confidence            9999888754

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=2.3e-28  Score=231.31  Aligned_cols=247  Identities=21%  Similarity=0.308  Sum_probs=164.7

Q ss_pred             HHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHH
Q psy8308          31 KNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAV  110 (311)
Q Consensus        31 ~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~  110 (311)
                      .+|+++|+++|+.+.+.+      +.+||+||.++++++|++|.+.        |+.+||+ |+++++|++++++++||+
T Consensus         5 ~~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~--------gv~~gd~-V~i~~~n~~~~~~~~la~   69 (501)
T PRK13390          5 THAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDA--------GLRTGDV-VALLSDNSPEALVVLWAA   69 (501)
T ss_pred             hhhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHHHHHHHHHH
Confidence            467789999999864321      2679999999999999999854        6777885 999999999999999999


Q ss_pred             HHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc-cc-ccchhhhhhhcccCCCCCCCCcccCCCCC
Q psy8308         111 WKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR-TV-LSLPQLRLLSASLSHNNIPGESMLHSDNN  188 (311)
Q Consensus       111 ~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (311)
                      +++|++++|+++.++++++.+++++++++++++++............ .. ..+..  .............    .....
T Consensus        70 ~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~  143 (501)
T PRK13390         70 LRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGG--EIDGFGSFEAALA----GAGPR  143 (501)
T ss_pred             HHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecC--cccccccHHHHhc----ccCCC
Confidence            99999999999999999999999999999999865321110000000 00 00000  0000000000000    00000


Q ss_pred             CCCCCCeEEEEEccCCCCCCcceEe--cchhHHHHH----HHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         189 NEQSNDIAIVLYTSGSTGIPKGVRL--PHEVILNRL----AWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       189 ~~~~~~~a~i~~TSGTTG~PKgV~~--th~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                      .....++++|+|||||||.||||++  +|+++....    ......+.+...+..   +...+++|..+..+..+ ....
T Consensus       144 ~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~h~~~~~~~~~-~~~~  219 (501)
T PRK13390        144 LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIY---YSSAPIYHAAPLRWCSM-VHAL  219 (501)
T ss_pred             CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeE---EecccchhhhHHHHHHH-HHhc
Confidence            1122357999999999999999995  555554321    111223445555543   33445555444333222 2235


Q ss_pred             CcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       263 g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      |+++++.+.  +++..+++.|+++++|.+..+|+++..|+..
T Consensus       220 g~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  259 (501)
T PRK13390        220 GGTVVLAKR--FDAQATLGHVERYRITVTQMVPTMFVRLLKL  259 (501)
T ss_pred             CceEEEcCC--cCHHHHHHHHHHcCCeEEEecHHHHHHHHhc
Confidence            778877664  4799999999999999999999999988864

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.2e-28  Score=234.36  Aligned_cols=256  Identities=18%  Similarity=0.172  Sum_probs=172.3

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++++..++.+|+.+++ +.++.    .++.+||+||.++++++|++|++.        |+++||+ |+++++|++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~--------gi~~gd~-V~l~~~n~~   85 (579)
T PRK09192         20 FPTLVEALDYAALGEAGMNFY-DRRGQ----LEEALPYQTLRARAEAGARRLLAL--------GLKPGDR-VALIAETDG   85 (579)
T ss_pred             hhhHHHHHHHhhccCCceEEE-ecCCC----EEEEecHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCCch
Confidence            468999999999998876654 32221    124689999999999999999853        6777886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCc-------HHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAP-------EQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSH  174 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~-------~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (311)
                      +|+++++|++++|++++|+++.+.       .+++.++++.++++++++++........... ... ........ ..  
T Consensus        86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~-~~~-~~~~~~~~-~~--  160 (579)
T PRK09192         86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATH-GNP-LLHVLSHA-WF--  160 (579)
T ss_pred             hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhc-ccc-ccceeehh-hh--
Confidence            999999999999999999987443       6899999999999999997653221111100 000 00000000 00  


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh-hcCCCCCCccceeecchhhhhhHHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      .....   .........++++++++|||||||.||||++||++++.++..... .+.+.+.++.   +..++++|.++..
T Consensus       161 ~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~---l~~~p~~h~~g~~  234 (579)
T PRK09192        161 KALPE---ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRC---VSWLPFYHDMGLV  234 (579)
T ss_pred             cccCC---CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeE---EEeCCCCCcchhH
Confidence            00000   001111235688999999999999999999999999877655554 5666666654   3344555544433


Q ss_pred             HHhhHhhcCCcEEEeCC--CCCCChhHHHHHHhhcCceEEEeChHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPR--DVTRNPDQLIGTLEKYKVERLVLVPSLLRSML  302 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~--~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll  302 (311)
                      ...+.....|.++++..  .+..+|..+++.|++++++.++.+|.++.++.
T Consensus       235 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~  285 (579)
T PRK09192        235 GFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCA  285 (579)
T ss_pred             HHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHH
Confidence            22222233455665443  22236899999999999998777665555444

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=1e-27  Score=229.96  Aligned_cols=266  Identities=21%  Similarity=0.257  Sum_probs=178.1

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|..+++.+|+++|+.+.+.        .+||+||.++++++|..|...       .|+++||+ |+++++|++
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~-------~g~~~g~~-V~i~~~~~~   85 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNG-------LGLKKGDR-VALMMPNLL   85 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHh-------cCCCCCCE-EEEECCCCH
Confidence            35789999999999999999986432        579999999999999999631       36677775 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccc----hhhhhh------
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSL----PQLRLL------  168 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~----~~~~~~------  168 (311)
                      +|++++||++++|++++|++|.++.+++.++++.++++++++++..........   ......+    +.....      
T Consensus        86 ~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (560)
T PRK08974         86 QYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVN  165 (560)
T ss_pred             HHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEeccccccccccccccc
Confidence            999999999999999999999999999999999999999998654221110000   0000000    000000      


Q ss_pred             ------hcccCCCCCCCC----------cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcC--
Q psy8308         169 ------SASLSHNNIPGE----------SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFP--  230 (311)
Q Consensus       169 ------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--  230 (311)
                            .........+..          ...........++++++++|||||||.||||.++|+++..++......+.  
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~  245 (560)
T PRK08974        166 FVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPL  245 (560)
T ss_pred             chhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccc
Confidence                  000000000000          00000011235689999999999999999999999998765543322221  


Q ss_pred             CCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         231 YSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ....+..  ....++++|.++..+..+.....|+.+++... ..++..+++.|+++++|.+..+|++++.|++..+
T Consensus       246 ~~~~~~~--~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  318 (560)
T PRK08974        246 LHPGKEL--VVTALPLYHIFALTVNCLLFIELGGQNLLITN-PRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE  318 (560)
T ss_pred             cCCCccE--EEEeCcHHHHHHHHHHHHHHhhcCCeEEEecC-ccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC
Confidence            1222211  23445555555443433444445665554432 2468899999999999999999999999987543

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.96  E-value=5.9e-28  Score=228.95  Aligned_cols=258  Identities=19%  Similarity=0.209  Sum_probs=174.1

Q ss_pred             HHHHHHH-HhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH
Q psy8308          26 HRIFEKN-AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI  104 (311)
Q Consensus        26 ~~~~~~~-a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~  104 (311)
                      .+++.++ ++.+||++|+.+.+.        .+||.||.++++++|+.|.+.        |+.+||+ |+++++|+++|+
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~--------g~~~g~~-v~l~~~~~~~~~   69 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRL--------GVKREER-VLLLMLDGVDFP   69 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHHH
Confidence            4555565 677999999986432        679999999999999999853        6677885 899999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc----cCCCCCCCC
Q psy8308         105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS----LSHNNIPGE  180 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  180 (311)
                      ++++|++++|++++|+++.++.+++.++++.+++++++++............ ..............    ....+....
T Consensus        70 ~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (508)
T TIGR02262        70 IAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEAGEVQLAELLAT  148 (508)
T ss_pred             HHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCcccccHHHHhhc
Confidence            9999999999999999999999999999999999999997643321111100 00000000000000    000000000


Q ss_pred             cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         181 SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       181 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                      ...........++++++++|||||||.||||++||+++...+.. ....+.+.+.+..   +...++.|..+........
T Consensus       149 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~---l~~~p~~~~~~~~~~~~~~  225 (508)
T TIGR02262       149 ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVV---FSAAKLFFAYGLGNALTFP  225 (508)
T ss_pred             CCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEE---EEcCchHHHHHHHHHHHHH
Confidence            00000111234688999999999999999999999999876544 3334456666653   2333433333322222223


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ...|+.+++... .+++..+++.|+++++|.+..+|+++..++++.
T Consensus       226 l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~  270 (508)
T TIGR02262       226 MSVGATTVLMGE-RPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP  270 (508)
T ss_pred             HHcCceEEEeCC-CCCHHHHHHHHHHHCCcEEecchHHHHHHhcCc
Confidence            334666666543 247999999999999999999999998887643

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.96  E-value=7.5e-28  Score=226.21  Aligned_cols=224  Identities=18%  Similarity=0.222  Sum_probs=165.8

Q ss_pred             HhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHH
Q psy8308          33 AALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWK  112 (311)
Q Consensus        33 a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~  112 (311)
                      ++..++++|+.+.+.        .+||+||.++++++|..|+             ++| +|+++++|+++|+++++||++
T Consensus        10 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~-------------~~~-~V~l~~~~~~~~~~~~la~~~   67 (471)
T PRK07787         10 AAAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA-------------GAR-RVAVLATPTLATVLAVVGALI   67 (471)
T ss_pred             hcccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc-------------cCC-EEEEECCCCHHHHHHHHHHHh
Confidence            445678999987543        5799999999999999884             246 599999999999999999999


Q ss_pred             hCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCCCCC
Q psy8308         113 AGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQS  192 (311)
Q Consensus       113 ~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (311)
                      +|++++|+++.++.+++.++++++++++++++.....     .  .+..+....   ..   .  ..     .......+
T Consensus        68 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~~-----~--~~~~~~~~~---~~---~--~~-----~~~~~~~~  127 (471)
T PRK07787         68 AGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDP-----A--GLPHVPVRL---HA---R--SW-----HRYPEPDP  127 (471)
T ss_pred             cCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCccc-----c--cccceeeec---cc---c--cc-----ccCCCCCC
Confidence            9999999999999999999999999999998653110     0  000000000   00   0  00     00111346


Q ss_pred             CCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCC
Q psy8308         193 NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDV  272 (311)
Q Consensus       193 ~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  272 (311)
                      +|+++++|||||||.||||++||+++..++......+...+.++.   +..+++.|..+..+..+.....|++++.... 
T Consensus       128 ~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-  203 (471)
T PRK07787        128 DAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVL---VHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR-  203 (471)
T ss_pred             CceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCcccee---EeccCCeeechhHHHHHHHHhcCCEEEecCC-
Confidence            899999999999999999999999998877666666666666653   2334444444333333444445778877653 


Q ss_pred             CCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         273 TRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       273 ~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                       +++..+++.|+ +++|++..+|+++..|++.
T Consensus       204 -~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~  233 (471)
T PRK07787        204 -PTPEAYAQALS-EGGTLYFGVPTVWSRIAAD  233 (471)
T ss_pred             -CCHHHHHHHHh-hCceEEEcchHHHHHHHhC
Confidence             47999999999 9999999999999998864

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=1.7e-27  Score=227.81  Aligned_cols=250  Identities=18%  Similarity=0.222  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.+.+...|...|+++++.+.+..      +.+||.||.++++++|++|.+.        |+++||+ |+++++|+++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ty~el~~~v~~~a~~L~~~--------g~~~gd~-V~l~~~~~~~~   67 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAP------VRHTWGEVHERARRIAGGLAAA--------GVGPGDA-VAVLAGAPVEI   67 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCc------eEecHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEECCCchHH
Confidence            4677788899999999998765432      2579999999999999999864        6778886 89999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHH-------HHHHHHHHcCCcEEEecCchhhhhhhhc--ccccccchhhhhhhcccCC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQ-------RVKHILNEARPLLVIAENEQACENLAYK--GRTVLSLPQLRLLSASLSH  174 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~-------el~~~l~~s~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  174 (311)
                      +++++||+++|++++|+++..+.+       ++.++++.++++++++++..........  .......+.+      ...
T Consensus        68 ~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~  141 (545)
T PRK07768         68 APTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADL------LAA  141 (545)
T ss_pred             HHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeehhhh------ccc
Confidence            999999999999999999887754       4466788899999998654321110000  0000001000      000


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCC-CccceeecchhhhhhHHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPS-ERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  253 (311)
                      .   .     .......++++++++|||||||.||||+++|+++............+.+. ++.   +..+++.|..+.+
T Consensus       142 ~---~-----~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~---~~~~p~~~~~g~~  210 (545)
T PRK07768        142 D---P-----IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVM---VSWLPLFHDMGMV  210 (545)
T ss_pred             C---C-----CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCcee---EEeCCCccchHHH
Confidence            0   0     01122457899999999999999999999999998776655555566554 443   3445555555544


Q ss_pred             HHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         254 WGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      .........|+.++....  +..+|..+++.+++++++++..+|.++.+|....
T Consensus       211 ~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~  264 (545)
T PRK07768        211 GFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRL  264 (545)
T ss_pred             HHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHH
Confidence            333334445677666432  2236888999999999999988888887776544

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=7.3e-27  Score=218.73  Aligned_cols=228  Identities=21%  Similarity=0.272  Sum_probs=166.8

Q ss_pred             HHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHH
Q psy8308          30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLA  109 (311)
Q Consensus        30 ~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la  109 (311)
                      +..++++|+++|+.+.+.        .+||+||.++++++|+.|.+.        |+.+||+ |+++++|+++++++++|
T Consensus        10 ~~~a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~--------g~~~~~~-v~l~~~~~~~~~~~~la   72 (458)
T PRK09029         10 RHWAQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQ--------GVVEGSG-VALRGKNSPETLLAYLA   72 (458)
T ss_pred             HHHHHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEecCCCHHHHHHHHH
Confidence            455888999999986432        579999999999999999753        6677785 99999999999999999


Q ss_pred             HHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCC
Q psy8308         110 VWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNN  189 (311)
Q Consensus       110 ~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (311)
                      ++++|++++|+++.++++++.+++++++++++++++....  ..       .+.... ..      ....     .....
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-------~~~~~~-~~------~~~~-----~~~~~  131 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT--FS-------ALTSLH-LQ------LVEG-----AHAVA  131 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc--hh-------hccccc-cc------cccc-----cCccc
Confidence            9999999999999999999999999999999998654311  00       000000 00      0000     00112


Q ss_pred             CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeC
Q psy8308         190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIP  269 (311)
Q Consensus       190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  269 (311)
                      ..++++++++|||||||.||||++||+++..........+...++++.   +...+++|..+..+ .+.....|+.+++.
T Consensus       132 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~---l~~~p~~h~~g~~~-~~~~l~~G~~v~~~  207 (458)
T PRK09029        132 WQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSW---LLSLPLFHVSGQGI-VWRWLYAGATLVVR  207 (458)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceE---EEecCcHhhhhhHH-HHHHHhCCceEEeC
Confidence            346889999999999999999999999998877666656666666653   23344444443221 22223447777765


Q ss_pred             CCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         270 RDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       270 ~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .     ...+++.++  ++|.+..+|+++..|+....
T Consensus       208 ~-----~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~  237 (458)
T PRK09029        208 D-----KQPLEQALA--GCTHASLVPTQLWRLLDNRS  237 (458)
T ss_pred             C-----hHHHHHHHh--hceeeecChHHHHHHHhccc
Confidence            4     245777774  89999999999999887543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.96  E-value=4.6e-27  Score=219.67  Aligned_cols=204  Identities=16%  Similarity=0.086  Sum_probs=147.1

Q ss_pred             cccHHHHHHHHHHHHHHHHhhhccCCCCCCC-CCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHH
Q psy8308          56 NETYSELNSASNQLARGLLHFLHTKAVPNEN-QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILN  134 (311)
Q Consensus        56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~-~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~  134 (311)
                      -+.|+||.++++++|++|.+.        |+ .+|+ +|+++++|+++++++++|++++|+++||+||.++++|+.++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~--------g~~~~~~-~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~   89 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQL--------ATPRTPP-KILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLN   89 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHh--------cCCCCCC-eEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHH
Confidence            357999999999999999864        44 3456 4899999999999999999999999999999999999999999


Q ss_pred             HcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEec
Q psy8308         135 EARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLP  214 (311)
Q Consensus       135 ~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~t  214 (311)
                      +++++++++++.....        .  .+       .     ...      ......+++.++++|||||||.||||++|
T Consensus        90 ~~~~~~~i~~~~~~~~--------~--~~-------~-----~~~------~~~~~~~~~~~~i~~TSGTTG~PKgV~~t  141 (452)
T PRK07445         90 LVQPDQIWGLDQLKLS--------H--PP-------P-----LPS------QGILPNLETGWIMIPTGGSSGQIRFAIHT  141 (452)
T ss_pred             hcCCCEEEecCccccc--------c--CC-------C-----CCc------cccCCCCCCcEEEEeCCCCCCCCcEEEec
Confidence            9999999986432110        0  00       0     000      00112467899999999999999999999


Q ss_pred             chhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeC
Q psy8308         215 HEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLV  294 (311)
Q Consensus       215 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~v  294 (311)
                      |+++..........+.+.+ ++   .+..+|++|..+. +..+.....|+++++.+...  +........++++|++.++
T Consensus       142 ~~~l~~~~~~~~~~~~~~~-~~---~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~--~~~~~~~~~~~~~t~~~~v  214 (452)
T PRK07445        142 WETLTASVQGFQRYFQLQQ-VN---SFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKR--LKSGQELPPNPSDFFLSLV  214 (452)
T ss_pred             hHHHHHHHHHHHHHhcCCC-Cc---eEeccCchhhhhH-HHHHHHHHcCCeEEEcChHh--ccchhhhhhhcCceEEEeh
Confidence            9998876665554444433 22   2334455554432 22333444577777765222  2222344457899999999


Q ss_pred             hHHHHHHHH
Q psy8308         295 PSLLRSMLM  303 (311)
Q Consensus       295 P~~~~~ll~  303 (311)
                      |+++.+|++
T Consensus       215 P~~l~~l~~  223 (452)
T PRK07445        215 PTQLQRLLQ  223 (452)
T ss_pred             HHHHHHHHh
Confidence            999999886

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=9.9e-27  Score=220.77  Aligned_cols=254  Identities=21%  Similarity=0.283  Sum_probs=168.0

Q ss_pred             HHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHH
Q psy8308          30 EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLA  109 (311)
Q Consensus        30 ~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la  109 (311)
                      ..+++++||++|+++...+      +.+||+||.++++++|+.|.+.        |+++||+ |+++++|+++++++++|
T Consensus         4 ~~~a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~--------g~~~~~~-V~v~~~~~~~~~~~~~a   68 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSL--------GLKRGDH-VAIFMENNLRYLEVCWA   68 (511)
T ss_pred             hhhHhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHHHHHHHH
Confidence            4678889999999864322      2579999999999999999753        5667775 99999999999999999


Q ss_pred             HHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCC--CCcccCC-C
Q psy8308         110 VWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIP--GESMLHS-D  186 (311)
Q Consensus       110 ~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~  186 (311)
                      ++++|++++|+++.++.+++.++++.+++++++++........... ......................  ....... .
T Consensus        69 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (511)
T PRK13391         69 AERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALL-KQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPA  147 (511)
T ss_pred             HHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHH-hcCCCceEEEEecCCCCCcccccHHHHhcCCCC
Confidence            9999999999999999999999999999999999765432111100 0000000000000000000000  0000000 0


Q ss_pred             CCCCCCCCeEEEEEccCCCCCCcceEe--cchhHHHHH---HHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         187 NNNEQSNDIAIVLYTSGSTGIPKGVRL--PHEVILNRL---AWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       187 ~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                      ....+.++.++++|||||||.||||++  +|.+.....   ......+.+.+.++.   +...++.|..+..+ .+....
T Consensus       148 ~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~p~~h~~~~~~-~~~~~~  223 (511)
T PRK13391        148 TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVY---LSPAPLYHSAPQRA-VMLVIR  223 (511)
T ss_pred             CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeE---EEcCCHHHHHHHHH-HHHHHH
Confidence            011134467899999999999999995  466653322   122233444545543   33445555444322 233444


Q ss_pred             CCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       262 ~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      .|+++++...  +++..+++.|+++++|++..+|+++..|++..
T Consensus       224 ~g~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  265 (511)
T PRK13391        224 LGGTVIVMEH--FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLP  265 (511)
T ss_pred             cCceEEECCC--CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCc
Confidence            5777777764  47999999999999999999999999888643

>KOG1175|consensus

Probab=99.95  E-value=1.2e-26  Score=216.61  Aligned_cols=267  Identities=21%  Similarity=0.233  Sum_probs=179.7

Q ss_pred             HHHHHHHHhh-CCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHH
Q psy8308          26 HRIFEKNAAL-SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLI  104 (311)
Q Consensus        26 ~~~~~~~a~~-~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~  104 (311)
                      +..+.++... .++++++++.....+..  ..+||.|+.+++.++|+.|..        .|+++||+ |++.+|+.+|++
T Consensus        67 ~n~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~t~~el~~~v~~~a~~l~~--------~g~~kGD~-V~~~mPm~~e~~  135 (626)
T KOG1175|consen   67 YNCLDRHIKEKGGDKVAIIFEGNEGGDT--EVWTYKELLDQVVRLANVLRK--------CGLKKGDT-VAIYMPMIPEAV  135 (626)
T ss_pred             HhhhhhhhhhcCCCCcEEEEEecCCCce--EEEEHHHHHHHHHHHHHHHHh--------cCCCCCcE-EEEeccCChHHH
Confidence            3445555443 48999998875443222  237999999999999999974        47888997 899999999999


Q ss_pred             HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhh--hcccc---cccchhh-hh-hhc-------
Q psy8308         105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLA--YKGRT---VLSLPQL-RL-LSA-------  170 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~--~~~~~---~~~~~~~-~~-~~~-------  170 (311)
                      ++++||.++|++.+++...++++++...+.+++||++|+.+........  .....   ...++.. .. ...       
T Consensus       136 ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  215 (626)
T KOG1175|consen  136 IAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN  215 (626)
T ss_pred             HHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc
Confidence            9999999999999999999999999999999999999986542211100  00000   0000000 00 000       


Q ss_pred             -ccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHH-HHHhhcCCCCCCccceeecchhhhh
Q psy8308         171 -SLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLA-WQWATFPYSPSERVGAFKTALTFVD  248 (311)
Q Consensus       171 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
                       ....................+.+|+.+|+|||||||.|||+.++++...-... .....+.+.+.|+...+....+...
T Consensus       216 ~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g  295 (626)
T KOG1175|consen  216 RDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITG  295 (626)
T ss_pred             ccccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeec
Confidence             00000000000011123335678999999999999999999999987765443 3334456677776544333333333


Q ss_pred             hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +....+++++.   |+++++.....+++..+++.+.+++||+++++|++++.|.+...
T Consensus       296 ~~~~~~gpl~~---Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~  350 (626)
T KOG1175|consen  296 HSYVLYGPLLN---GATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ  350 (626)
T ss_pred             cchhhhhhhhc---CcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc
Confidence            33333445554   66777765555589999999999999999999999998877554

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.95  E-value=1.3e-25  Score=206.88  Aligned_cols=229  Identities=33%  Similarity=0.468  Sum_probs=161.8

Q ss_pred             cHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcC
Q psy8308          58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEAR  137 (311)
Q Consensus        58 Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~  137 (311)
                      ||.||.++++++|+.|.+.       .|.++||+ |+++++|+++++++++||+++|++++|+++.++.+++.++++.++
T Consensus         1 t~~~l~~~~~~~a~~l~~~-------~g~~~gd~-v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~   72 (408)
T TIGR01733         1 TYRELDERANRLARHLRAA-------GGVGPGDR-VAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAG   72 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHh-------hCCCCCCE-EEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcC
Confidence            7999999999999999852       25677885 999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchh
Q psy8308         138 PLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEV  217 (311)
Q Consensus       138 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~  217 (311)
                      +++++++.......... ...............    ......   .........+++++++|||||||.||+|.+||++
T Consensus        73 ~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~  144 (408)
T TIGR01733        73 ARLLLTDSALASRLAGL-VLPIILVDPLELAAL----DDAPAP---PPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRS  144 (408)
T ss_pred             CCEEEEcCchhhhcccc-CCceEEechhhhhhc----cccccc---ccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHH
Confidence            99999976543221111 001111110000000    000000   0001113468899999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCC-CChhHHHHHHhhcCceEEEeChH
Q psy8308         218 ILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVT-RNPDQLIGTLEKYKVERLVLVPS  296 (311)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~-~~p~~~~~~i~~~~vt~~~~vP~  296 (311)
                      +..........+.+.+.++...   ..++.|..+ ++..+.....|+.+++..... ..+..+.+.++++++|.+..+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~-~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~  220 (408)
T TIGR01733       145 LVNLLAWLARRYGLDPDDRVLQ---FASLSFDAS-VEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPS  220 (408)
T ss_pred             HHHHHHHHHHhcCCCCCceEEE---ecCCccchh-HHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHH
Confidence            9887766666666666665433   233333322 233344444566666654432 24789999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy8308         297 LLRSMLMFLK  306 (311)
Q Consensus       297 ~~~~ll~~~~  306 (311)
                      ++.+|++..+
T Consensus       221 ~~~~l~~~~~  230 (408)
T TIGR01733       221 LLALLAAALP  230 (408)
T ss_pred             HHHHHHHhhh
Confidence            9999998754

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=2.3e-26  Score=195.01  Aligned_cols=217  Identities=16%  Similarity=0.143  Sum_probs=140.0

Q ss_pred             HHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHH
Q psy8308          29 FEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLL  108 (311)
Q Consensus        29 ~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~l  108 (311)
                      +...++.+|+++|+++.++....  .+++||+|+.++++++|++|++.       .|+++||+ |+|+++|+++|+++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~--~~~~Ty~~l~~~~~~~a~~L~~~-------~Gv~~Gdr-V~i~~~n~~~~~~~~~   71 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGE--RVELSAATLANWVAKTANLLQDE-------LDAEPGSR-VALDLPAHWQTAVWLL   71 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCe--eEEEEHHHHHHHHHHHHHHHHHH-------hCCCCCCE-EEEECCCCHHHHHHHH
Confidence            35667889999999754221100  12579999999999999999751       26788896 8999999999999999


Q ss_pred             HHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchh--hhh------hhcccCCCCCCCC
Q psy8308         109 AVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQ--LRL------LSASLSHNNIPGE  180 (311)
Q Consensus       109 a~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~  180 (311)
                      |++++|++++|+|             ++++++++++.+...... . .+....+..  ...      .............
T Consensus        72 a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        72 AAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-G-SGEVVALSLDPLGRRVAGELPPGVIDFAPEVRV  136 (227)
T ss_pred             HHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-c-CCceEEEeccccccCCCCCCCCcccchhhhhhc
Confidence            9999999999996             789999999765433211 1 111111100  000      0000000000000


Q ss_pred             cccCCCCC-CCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         181 SMLHSDNN-NEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       181 ~~~~~~~~-~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                      ........ ..+++|++.|+|||||         +|++++.+.    ...+++++|+.   + .+|++|..+..+..+..
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~---l-~~Pl~H~~gl~~~~~~~  199 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRV---L-VLAWTDLEDFLATLLAP  199 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeE---E-ecCCCchHHHHHHHHHH
Confidence            00001111 2356899999999986         677765543    34567777775   3 45555554443334444


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCce
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVE  289 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt  289 (311)
                      +..|+++++++  +|||+.+++.|+++|||
T Consensus       200 l~~G~t~v~~~--rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       200 LAAGGSLVLVT--HPDPARLDQIAETERVT  227 (227)
T ss_pred             hccCceEEEec--CCCHHHHHHHHHhhcCC
Confidence            55688888876  46899999999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.94  E-value=2.9e-25  Score=210.58  Aligned_cols=235  Identities=22%  Similarity=0.334  Sum_probs=154.8

Q ss_pred             cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHH
Q psy8308          56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNE  135 (311)
Q Consensus        56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~  135 (311)
                      .+||.||.++++++|++|.+.        |+.+||+ |+++++|+++++++++|++++|++++|++|.++.+++.++++.
T Consensus        11 ~~Ty~el~~~~~~la~~l~~~--------g~~~g~~-V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~   81 (509)
T PRK12406         11 RRSFDELAQRAARAAGGLAAL--------GVRPGDC-VALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED   81 (509)
T ss_pred             eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence            679999999999999999854        6677885 8999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCchhhhhhhhccc--ccccchhhhh------hhccc---CCCCCCCCcc--cCCCCCCCCCCCeEEEEEcc
Q psy8308         136 ARPLLVIAENEQACENLAYKGR--TVLSLPQLRL------LSASL---SHNNIPGESM--LHSDNNNEQSNDIAIVLYTS  202 (311)
Q Consensus       136 s~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TS  202 (311)
                      +++++++++.............  ..........      .....   ..........  ..........+++++++|||
T Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEECC
Confidence            9999999865432211111000  0000000000      00000   0000000000  00011122467899999999


Q ss_pred             CCCCCCcceEecchhHHHH---HHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHH
Q psy8308         203 GSTGIPKGVRLPHEVILNR---LAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQL  279 (311)
Q Consensus       203 GTTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~  279 (311)
                      ||||.||||+++|.+....   .......+.+.+.++..   ...+++|.....+. +.....|+++++...  ++|..+
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~--~~~~~~  235 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRAL---LTGPLYHSAPNAYG-LRAGRLGGVLVLQPR--FDPEEL  235 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEE---EEeCCcccchHHHH-HHHHhhheEEEEccC--CCHHHH
Confidence            9999999999987654322   22223345566665542   23344433332222 222334667766553  479999


Q ss_pred             HHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         280 IGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       280 ~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ++.|+++++|.+..+|+++..|+...
T Consensus       236 ~~~l~~~~~t~~~~~P~~~~~l~~~~  261 (509)
T PRK12406        236 LQLIERHRITHMHMVPTMFIRLLKLP  261 (509)
T ss_pred             HHHHHHcCCeEEEccHHHHHHHHhCc
Confidence            99999999999999999999988754

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.94  E-value=1.8e-25  Score=207.74  Aligned_cols=215  Identities=20%  Similarity=0.199  Sum_probs=157.8

Q ss_pred             cHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcC
Q psy8308          58 TYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEAR  137 (311)
Q Consensus        58 Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~  137 (311)
                      ||+||.++++++|+.|.+.        |+++||+ |+++++|+++++++++|++++|++++|+++.++.+++..+++.++
T Consensus         1 Ty~~l~~~~~~~a~~l~~~--------g~~~gd~-v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~   71 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQ--------GIRSGSR-VALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLD   71 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcC
Confidence            7999999999999999853        6777885 999999999999999999999999999999999999999999999


Q ss_pred             CcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchh
Q psy8308         138 PLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEV  217 (311)
Q Consensus       138 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~  217 (311)
                      ++++++++......     .....+....   ...     ....   ........+++++++|||||||.||||+++|++
T Consensus        72 ~~~~i~~~~~~~~~-----~~~~~~~~~~---~~~-----~~~~---~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~  135 (436)
T TIGR01923        72 VQLLLTDSLLEEKD-----FQADSLDRIE---AAG-----RYET---SLSASFNMDQIATLMFTSGTTGKPKAVPHTFRN  135 (436)
T ss_pred             CCEEEEcCcccccc-----eeecchHhhh---hcc-----cccc---cccccCCcCceEEEEeCCCCCCCCcEEEEehHH
Confidence            99999975421100     0000011110   000     0000   001123467899999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHH
Q psy8308         218 ILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSL  297 (311)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~  297 (311)
                      +..........+.+.+.++...   ..++.|..+. ...+.....|+++++...+    ..+++.|+++++|++..+|++
T Consensus       136 ~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~----~~~~~~l~~~~~t~~~~~P~~  207 (436)
T TIGR01923       136 HYASAVGSKENLGFTEDDNWLL---SLPLYHISGL-SILFRWLIEGATLRIVDKF----NQLLEMIANERVTHISLVPTQ  207 (436)
T ss_pred             HHHHHHHHHhhcCCCCCceEEE---ccCcHhHHHH-HHHHHHHhcCceEEecchH----HHHHHHHHHhCCeEEEeHHHH
Confidence            9887776666677777776433   2333333222 1223334457777776532    489999999999999999999


Q ss_pred             HHHHHHHH
Q psy8308         298 LRSMLMFL  305 (311)
Q Consensus       298 ~~~ll~~~  305 (311)
                      +..|++..
T Consensus       208 l~~l~~~~  215 (436)
T TIGR01923       208 LNRLLDEG  215 (436)
T ss_pred             HHHHHhCc
Confidence            99998754

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1180|consensus

Probab=99.94  E-value=3.8e-26  Score=205.36  Aligned_cols=270  Identities=19%  Similarity=0.248  Sum_probs=179.0

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEeccc---------Cccc------cccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQ---------DKDT------LVITNETYSELNSASNQLARGLLHFLHTKAVPNEN   86 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~---------~~~~------~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~   86 (311)
                      ..++++++++...++.++.++..++-         ++..      ..|..+||.|+.+++.++|++|...        |.
T Consensus        40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~l--------G~  111 (678)
T KOG1180|consen   40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKL--------GL  111 (678)
T ss_pred             cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHh--------CC
Confidence            36889999999999988888764320         1100      1246679999999999999999865        56


Q ss_pred             CCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc--c---ccccc
Q psy8308          87 QDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK--G---RTVLS  161 (311)
Q Consensus        87 ~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~--~---~~~~~  161 (311)
                      +++++.++|++..+.+|+.+++||++.+..+|.++.++..+.+.|-|+.++++.+|++.+.........  .   +.++.
T Consensus       112 k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~  191 (678)
T KOG1180|consen  112 KPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIY  191 (678)
T ss_pred             CCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEE
Confidence            666767999999999999999999999999999999999999999999999999999876554222110  0   11111


Q ss_pred             chhhh------hhh----c---ccCCCCC--CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHH
Q psy8308         162 LPQLR------LLS----A---SLSHNNI--PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQW  226 (311)
Q Consensus       162 ~~~~~------~~~----~---~~~~~~~--~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~  226 (311)
                      .+.+.      .+.    .   ..++.++  .+.... .++.+..++|+|+|||||||||.|||||++|+|+.+.+....
T Consensus       192 ~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~  270 (678)
T KOG1180|consen  192 FDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVG  270 (678)
T ss_pred             ecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhc
Confidence            11000      000    0   0000000  000000 011122579999999999999999999999999998877666


Q ss_pred             hhc-CCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCC-CCCChh-HH----HHHHhhcCceEEEeChHHHH
Q psy8308         227 ATF-PYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD-VTRNPD-QL----IGTLEKYKVERLVLVPSLLR  299 (311)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~~p~-~~----~~~i~~~~vt~~~~vP~~~~  299 (311)
                      ... .+.+.|++..+   +|+.|.+-..+ -+..+..|+.+--... .-.|.. .+    --.+...|+|.|..||++|.
T Consensus       271 ~~v~~lg~~D~yi~y---LPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~d  346 (678)
T KOG1180|consen  271 ENVPELGPKDRYIAY---LPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMD  346 (678)
T ss_pred             ccCcccCCCceEEEe---chHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHH
Confidence            555 57788886655   45555554433 2333333444432110 000100 11    12356889999999999999


Q ss_pred             HHHHH
Q psy8308         300 SMLMF  304 (311)
Q Consensus       300 ~ll~~  304 (311)
                      +.-+.
T Consensus       347 rVrKg  351 (678)
T KOG1180|consen  347 RVRKG  351 (678)
T ss_pred             HHHHH
Confidence            87654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=2.2e-25  Score=211.01  Aligned_cols=234  Identities=21%  Similarity=0.339  Sum_probs=153.9

Q ss_pred             cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHH
Q psy8308          56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNE  135 (311)
Q Consensus        56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~  135 (311)
                      .+||+||.++++++|++|.+.        |+++||+ |+++++|+++++++++|++++|++++|+++.++.+++.++++.
T Consensus        11 ~~ty~el~~~v~~~a~~L~~~--------g~~~~~~-V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~   81 (502)
T PRK08276         11 VVTYGELEARSNRLAHGLRAL--------GLREGDV-VAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD   81 (502)
T ss_pred             EEEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence            679999999999999999864        6677775 9999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCchhhhhhhhcccccc-cchhhhhhhcccC-CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEe
Q psy8308         136 ARPLLVIAENEQACENLAYKGRTVL-SLPQLRLLSASLS-HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRL  213 (311)
Q Consensus       136 s~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~  213 (311)
                      ++++++++++........... ... ....+........ ...................+++++++|||||||.||||++
T Consensus        82 ~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~  160 (502)
T PRK08276         82 SGAKVLIVSAALADTAAELAA-ELPAGVPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKR  160 (502)
T ss_pred             CCCCEEEEccchhhHHHHHhh-hccccccEEEEeCCCCCccccHHHHHhcCCCCCCCCCCcceEEEECCCCCCCCceEEE
Confidence            999999997644321111100 000 0000000000000 0000000000001111245678999999999999999999


Q ss_pred             cchhHHHHHH------HHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcC
Q psy8308         214 PHEVILNRLA------WQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYK  287 (311)
Q Consensus       214 th~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~  287 (311)
                      +|.+......      ...........+.   ++...+.+|..+..+. +.....|+.+++...  +++..+++.+++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~--~~~~~~~~~i~~~~  234 (502)
T PRK08276        161 PLPGLDPDEAPGMMLALLGFGMYGGPDSV---YLSPAPLYHTAPLRFG-MSALALGGTVVVMEK--FDAEEALALIERYR  234 (502)
T ss_pred             ccCCcchhhhhHHhhhhhhhcccCCCCCE---EEEcCcHHHHHHHHHH-HHHHhccceEEEcCC--CCHHHHHHHHHHhC
Confidence            9887643221      1111111122332   2334444444433222 234445777777654  47999999999999


Q ss_pred             ceEEEeChHHHHHHHHHH
Q psy8308         288 VERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       288 vt~~~~vP~~~~~ll~~~  305 (311)
                      +|++.++|+++..|++..
T Consensus       235 ~t~~~~~P~~~~~l~~~~  252 (502)
T PRK08276        235 VTHSQLVPTMFVRMLKLP  252 (502)
T ss_pred             CeEEEehHHHHHHHHhCc
Confidence            999999999999998764

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.93  E-value=2.7e-25  Score=210.41  Aligned_cols=204  Identities=16%  Similarity=0.130  Sum_probs=130.9

Q ss_pred             eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchh------hh--hhhhc-ccccccch--h-
Q psy8308          97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQA------CE--NLAYK-GRTVLSLP--Q-  164 (311)
Q Consensus        97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~------~~--~~~~~-~~~~~~~~--~-  164 (311)
                      ++|++|++++++||+++|+++||+|+.++.+|+.+++++++++++|+++...      ..  ..... ......+.  . 
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            5899999999999999999999999999999999999999999999975321      00  00000 00000000  0 


Q ss_pred             ---------hhhhhcccCCCCCCCCccc-CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCC
Q psy8308         165 ---------LRLLSASLSHNNIPGESML-HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPS  234 (311)
Q Consensus       165 ---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~  234 (311)
                               ................... ........++|+++|+|||||||.||||++||+|+..+.......+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence                     0000000000000000000 000111246899999999999999999999999987655444444566666


Q ss_pred             CccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         235 ERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ++..   ...++.|..+. +..+..+..|+++++... .+++..+++.|+++++|++..+|+++.+|+++.
T Consensus       161 d~~l---~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~-~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~  226 (499)
T PLN03051        161 DVVC---WPTNLGWMMGP-WLLYSAFLNGATLALYGG-APLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTG  226 (499)
T ss_pred             CEEE---EccCcceeeeh-HHHHHHHHcCCEEEecCC-CCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcC
Confidence            6642   23333333221 222333445778877653 246889999999999999999999999998754

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=2.7e-23  Score=202.53  Aligned_cols=247  Identities=37%  Similarity=0.555  Sum_probs=184.1

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++...|...+...|+++|+.+.+.        ++||+|++.+++++|+.|.+.        |+.+++. |+++++.+++
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~--------g~~~~~~-V~i~~~rs~~  289 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISL--------GVGPGET-VAILADRSLE  289 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCe-EEEEcCCCHH
Confidence            4689999999999999999987632        579999999999999999754        5566775 9999988999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      ++++++|++++|+.+||++|.++.+.+.+++++++++.+++.........   .......+.      .  .........
T Consensus       290 ~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~--~~~~~~~~~  358 (642)
T COG1020         290 LVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV---GLPGLALDD------A--LSEIPDTDP  358 (642)
T ss_pred             HHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc---cCCcccccc------c--cccCCccCc
Confidence            99999999999999999999999999999999999999998632211000   000000000      0  000000000


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcC
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC  262 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
                        . .....+++.++++|||||||.||||+.+|++..+...+....+.....++... ..+..+..+...+|.++..   
T Consensus       359 --~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~-~~s~~fD~~~~~~f~~l~~---  431 (642)
T COG1020         359 --I-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLA-LASLSFDASVFEIFGALLE---  431 (642)
T ss_pred             --c-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEee-cCCcccchhHHHHHHHHhC---
Confidence              0 11234579999999999999999999999999886666666677777775433 3344555555666666665   


Q ss_pred             CcEEEeC-CCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         263 GGVLIIP-RDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       263 g~~~v~~-~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      |+.+++. .....++..+.+.++++++|.+..+|.++..++..
T Consensus       432 G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~  474 (642)
T COG1020         432 GARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA  474 (642)
T ss_pred             CCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence            5555554 44556899999999999999999999999998876

>KOG3628|consensus

Probab=99.65  E-value=1.7e-14  Score=139.04  Aligned_cols=267  Identities=18%  Similarity=0.198  Sum_probs=179.8

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++++..+..+||.+|+..-+....+  -.++||++++.+|.+++..|+..       ...+.||. |+++.+++.|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~--~~~~Tw~~f~krva~i~~~l~~k-------~~lk~Gd~-V~Lmy~~sie  839 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGAT--KKTLTWAQFHKRVARIAEYLQDK-------GHLKAGDH-VVLMYPPSIE  839 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcc--cceeEHHHHHHHHHHHHHHHHhc-------ccCCCCCe-EEEEcCChHH
Confidence            58899999999999999998875443332  24789999999999999999853       35678897 8899999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCC------cHHHHHHHHHHcCCcEEEecCchhhhhhhhcc----cccccchhhhhhhccc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTA------PEQRVKHILNEARPLLVIAENEQACENLAYKG----RTVLSLPQLRLLSASL  172 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~------~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  172 (311)
                      ++++++||+++|.+++|+-|.-      +-.++..+++.++++.+++++... .......    .....++.+....+..
T Consensus       840 ~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~-~lLrsr~~s~~~~~s~~p~i~~~~~~~  918 (1363)
T KOG3628|consen  840 FVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVL-KLLRSREASAHVDQSAIPLILVLPKLP  918 (1363)
T ss_pred             HHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHH-HHHhhhhHHHHhhhhcchhhhcccccc
Confidence            9999999999999999998763      457889999999999999975432 1111110    0000011111111000


Q ss_pred             -----CCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhh
Q psy8308         173 -----SHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFV  247 (311)
Q Consensus       173 -----~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (311)
                           ..... ...-...++...+.+.+|++=|.--++|.--|+-.||..+++.+...-....+.+....   +....+.
T Consensus       919 ~t~~k~~~~~-~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl---~~~~~~~  994 (1363)
T KOG3628|consen  919 ETIRKRKKNI-KKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPL---LGCSSPY  994 (1363)
T ss_pred             hhhhhhhhhh-hccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCce---EEEecCc
Confidence                 00000 00000011112346789999999999999999999999998877766666666665543   2223333


Q ss_pred             hhHHHHHHhhHhhcCCcE--EEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         248 DAVSEIWGPLLSARCGGV--LIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       248 ~~~~~~~~~~~~~~~g~~--~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      .++++++-.++....|..  .+.|.++..+|..++..|++++|..++..=.-++.+.++
T Consensus       995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~ 1053 (1363)
T KOG3628|consen  995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKG 1053 (1363)
T ss_pred             cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhc
Confidence            344433334444444443  444556667899999999999999988776666665553

>KOG1178|consensus

Probab=99.50  E-value=1e-13  Score=136.56  Aligned_cols=264  Identities=28%  Similarity=0.433  Sum_probs=166.0

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      .+...+++.+...|+.++..+-..........++||++....++-+++.|...        +...| .+|++++..+.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~--------~~~~~-~~v~i~~~~~~d~  107 (1032)
T KOG1178|consen   37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSL--------GSLRG-TTVAIYMLPSVDL  107 (1032)
T ss_pred             chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhc--------ccccC-ceEEEeccCcCCe
Confidence            45567888888889888866543322223345789999999999999988642        43444 4799999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCc----HHHHHHHHHHcC-CcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAP----EQRVKHILNEAR-PLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIP  178 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~----~~el~~~l~~s~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (311)
                      ++..++.+++|..++|++|.+.    ++++..+...-. ...-+.............  ..+... +....+.  +....
T Consensus       108 ~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~--~~~~~s-v~~~~~~--f~~~~  182 (1032)
T KOG1178|consen  108 VVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNS--LFPKLS-VETIADS--FQMVL  182 (1032)
T ss_pred             eeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhc--cccccc-hhhccch--hhhhh
Confidence            9999999999999999999999    222222111100 011111100000000000  000000 0000000  00000


Q ss_pred             CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhH
Q psy8308         179 GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLL  258 (311)
Q Consensus       179 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
                      .-... .+....-++..+++.||||+||.||||.-+|..+.+...+....++.+..++. .+.+...++..+...+++++
T Consensus       183 ~~~~~-r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L  260 (1032)
T KOG1178|consen  183 HNEDT-REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALL  260 (1032)
T ss_pred             ccCCC-cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHh
Confidence            00000 00011345679999999999999999999999999988888887877777765 55555655555555555555


Q ss_pred             hhcCCcEEEeCCCCCC-ChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         259 SARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       259 ~~~~g~~~v~~~~~~~-~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ..  |..+..|..... .|.++.+.+++++++..+.+|++.+.++...
T Consensus       261 ~~--~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~  306 (1032)
T KOG1178|consen  261 FN--GNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAIL  306 (1032)
T ss_pred             hc--CceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhc
Confidence            53  445555543322 3789999999999999999999988776643

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.48  E-value=2.4e-13  Score=124.23  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             CCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCC
Q psy8308         193 NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDV  272 (311)
Q Consensus       193 ~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  272 (311)
                      ++.++++|||||||.||||++||+++..........+.+...+.. .++...|++|..+..+..+.....|+++++... 
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d-r~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~-  172 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVR-RVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA-  172 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCC-eEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-
Confidence            458999999999999999999999998766555555555433211 133445555555544444444556888877664 


Q ss_pred             CCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         273 TRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       273 ~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                       +++..+++.++.+  |+++.+|+++++|++.
T Consensus       173 -~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~  201 (386)
T TIGR02372       173 -APASGIMRHARPG--DLIVGTPFIWEQLADL  201 (386)
T ss_pred             -CChHHHHHhhccC--CEEEECcHHHHHHHhh
Confidence             4688899888754  7899999999998764

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.34  E-value=1e-11  Score=112.67  Aligned_cols=109  Identities=21%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             CCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeC-
Q psy8308         191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIP-  269 (311)
Q Consensus       191 ~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-  269 (311)
                      .++|+++++|||||||.||||+++|+++..........+  ...++   ++..++++|..+.. ..+.....|+..++. 
T Consensus        33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~---~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~  106 (358)
T PRK07824         33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQ---WLLALPAHHIAGLQ-VLVRSVIAGSEPVELD  106 (358)
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCe---EEEECChHHHHHHH-HHHHHHHcCCeEEecC
Confidence            467999999999999999999999999887655443322  22232   22334444443322 122233345555542 


Q ss_pred             CCCCCChhHHHHHHhhcC--ceEEEeChHHHHHHHHHH
Q psy8308         270 RDVTRNPDQLIGTLEKYK--VERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       270 ~~~~~~p~~~~~~i~~~~--vt~~~~vP~~~~~ll~~~  305 (311)
                      ....+++..+++.|++++  +++...+|+.+..++.+.
T Consensus       107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~  144 (358)
T PRK07824        107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDP  144 (358)
T ss_pred             cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCc
Confidence            112357999999999998  566778999888777654

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.28  E-value=2.7e-11  Score=112.54  Aligned_cols=114  Identities=15%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             CCCCeEEEEEccCCCCCCcceEecchhHHHHHHH---HHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEE
Q psy8308         191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW---QWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI  267 (311)
Q Consensus       191 ~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  267 (311)
                      ..++++.++|||||||.||+|.+||+++......   .....++.+.++....+....+.......+   .....|.+++
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~  149 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHY---GAEKLGCTVV  149 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHH---HHHHcCcEEE
Confidence            3567889999999999999999999988654322   223346666665432211111111111111   1233466766


Q ss_pred             eCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         268 IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       268 ~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ....  .+++.+++.|+++++|++..+|+++..|.++.+..+
T Consensus       150 ~~~~--~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~  189 (422)
T TIGR02155       150 PISG--GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMG  189 (422)
T ss_pred             ecCC--CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC
Confidence            5443  257899999999999999999999999988766544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.08  E-value=9.5e-10  Score=102.78  Aligned_cols=112  Identities=18%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             CCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh---hcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEE
Q psy8308         191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA---TFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI  267 (311)
Q Consensus       191 ~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  267 (311)
                      ..++++.+.|||||||.||+|.+||+++.........   ..++.+.++..... +..+..+...++  ......|.+++
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~-~~~~~~g~~~~~--~~~~~~Ga~vi  160 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICA-SYGMNVGANTMT--LAAREVGMSII  160 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEe-cCCcchhHHHHH--HHHHHcCCEEE
Confidence            3568899999999999999999999988755433222   23667777654332 222221111111  11223466665


Q ss_pred             eCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         268 IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       268 ~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ...    .....++.|+++++|.+...|+.+..|.++++..|
T Consensus       161 ~~~----~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g  198 (445)
T TIGR03335       161 PEG----KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEG  198 (445)
T ss_pred             cCC----chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC
Confidence            432    23567899999999999999999888887766554

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=98.17  E-value=2.5e-05  Score=71.29  Aligned_cols=114  Identities=17%  Similarity=0.171  Sum_probs=77.9

Q ss_pred             CCCCeEEEEEccCCCCCCcceEecchhHHHHHHH---HHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEE
Q psy8308         191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW---QWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI  267 (311)
Q Consensus       191 ~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  267 (311)
                      ..++...|.-||||||.|+-+.+|+..+......   .....+....++.........+..+++.-.+ .-  ..|.+++
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~g-a~--rig~~vi  164 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYG-AE--RIGATVI  164 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHH-HH--hhCEEEE
Confidence            3456788999999999999999999876543332   3334456667766544433333333222121 11  2455555


Q ss_pred             eCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         268 IPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       268 ~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ..-  .-+.++-+++|+++++|++...|+.+..|-+.++..|
T Consensus       165 p~~--~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G  204 (438)
T COG1541         165 PIS--GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG  204 (438)
T ss_pred             ccC--CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC
Confidence            432  1257889999999999999999999999999988887

>KOG3628|consensus

Probab=97.90  E-value=0.00024  Score=70.40  Aligned_cols=252  Identities=16%  Similarity=0.186  Sum_probs=145.6

Q ss_pred             HHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC-ChhHH
Q psy8308          26 HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP-SSGLI  104 (311)
Q Consensus        26 ~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n-~~e~~  104 (311)
                      ..+++..-.+++.++|.+.-+..+.   .+.+||..+..++.++|+.-+.       +.|..++|++|..+-.+ -.|++
T Consensus        97 ~avl~~~~nhs~~~ta~i~id~kgk---~~~~twdkl~~rA~k~a~~~l~-------ksgl~~~~~vvL~Y~~~e~ie~~  166 (1363)
T KOG3628|consen   97 IAVLRYRRNHSATSTAHICIDKKGK---ATSITWDKLLNRAEKVAHVELN-------KSGLKPGDRVVLYYRKCEAIEFL  166 (1363)
T ss_pred             HHHHHhhccCCCCCceEEEEcCCCc---eeeeeHHHHHHHHHhhccHHhh-------ccCCCCCcEEEEEEEhhhhhHHh
Confidence            3444444466777788665443221   3478999999999999995433       25778889855444333 35799


Q ss_pred             HHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcccC
Q psy8308         105 QVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLH  184 (311)
Q Consensus       105 ~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (311)
                      +..+||.-.|.+.+|+++..+-+|+..+++-...++++....... .. .....-..++.........++..  ......
T Consensus       167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r-~~-~~~~~~~s~~k~v~~w~t~~~k~--~~~~~k  242 (1363)
T KOG3628|consen  167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGER-AF-INDNSPVSLAKAVAWWKTNDFKG--NYTKDK  242 (1363)
T ss_pred             hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHH-Hh-hhccCcccHHHHHHhhhcccccc--eeehhh
Confidence            999999999999999999999999999999999999987543211 10 00000011111111111111110  000001


Q ss_pred             CCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH------------HhhcC-----CCCCCccceeecchhhh
Q psy8308         185 SDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ------------WATFP-----YSPSERVGAFKTALTFV  247 (311)
Q Consensus       185 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~------------~~~~~-----~~~~~~~~~~~~~~~~~  247 (311)
                      ...+...-. ..+|-||++.+|+=-||..+|+ +..+....            ...++     .-+.+....+.......
T Consensus       243 ~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s  320 (1363)
T KOG3628|consen  243 IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPS  320 (1363)
T ss_pred             ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcc
Confidence            111111112 8999999999999999999997 33322111            01111     00101011122222222


Q ss_pred             hhHHHHHHhhHhhcCCc-EEEeCCCCCCChhHHHHHHhhcCceEEEe
Q psy8308         248 DAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVL  293 (311)
Q Consensus       248 ~~~~~~~~~~~~~~~g~-~~v~~~~~~~~p~~~~~~i~~~~vt~~~~  293 (311)
                      -.++++++.+.+...|. ++..|.++..-|-.+...+-++|.+++..
T Consensus       321 ~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~lt  367 (1363)
T KOG3628|consen  321 QQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLT  367 (1363)
T ss_pred             cccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEee
Confidence            23444555444444444 55556666556888999999999998754

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=96.84  E-value=0.018  Score=53.51  Aligned_cols=106  Identities=18%  Similarity=0.058  Sum_probs=62.3

Q ss_pred             eEEEEEccCCCCCCcceEecchhHHHHHHHHHh---hcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCC
Q psy8308         195 IAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA---TFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD  271 (311)
Q Consensus       195 ~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  271 (311)
                      ...+.-||||||.|-.+..+.............   ..++...++...+.....      ..+..+.....  .+- ..+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~------~ly~~~~~~~~--~~~-~~~  171 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN------NLYQSVNNRWI--SLD-FFD  171 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh------hHHHHHHhccc--eee-ecC
Confidence            456777999999999999999865432221111   112333344332211111      11211111100  011 111


Q ss_pred             CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       272 ~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ...+.++.++.|++++++++...|+.+..|.++.+..+
T Consensus       172 l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~  209 (430)
T TIGR02304       172 LLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGE  209 (430)
T ss_pred             CCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcC
Confidence            12357899999999999999999999999998776544

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=94.97  E-value=0.41  Score=43.61  Aligned_cols=118  Identities=15%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             CCCeEEEEEccCCCCCCcceEecchhHHHHHH---HHHhhcCCCCCCccce-eecchhhh-hhHHHHHH-hhHhhcCCcE
Q psy8308         192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLA---WQWATFPYSPSERVGA-FKTALTFV-DAVSEIWG-PLLSARCGGV  265 (311)
Q Consensus       192 ~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~~g~~  265 (311)
                      ++++...+-||||||.|--+.+.+..+.....   .....+.......... .+.+.... ..+...+. .+.....+..
T Consensus        88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (365)
T PF04443_consen   88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR  167 (365)
T ss_pred             hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence            45677888899999998545554443333221   2222221111111111 11111111 11111111 1111122334


Q ss_pred             EEeCCCCCCChhHHHHHH----hhcCceEEEeChHHHHHHHHHHhhhCC
Q psy8308         266 LIIPRDVTRNPDQLIGTL----EKYKVERLVLVPSLLRSMLMFLKMTGT  310 (311)
Q Consensus       266 ~v~~~~~~~~p~~~~~~i----~~~~vt~~~~vP~~~~~ll~~~~~~~~  310 (311)
                      ..+ .+..+|.+.+++.+    .+.++..++..|.++..++..++..+.
T Consensus       168 ~~l-~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~  215 (365)
T PF04443_consen  168 FAL-DNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGI  215 (365)
T ss_pred             eee-cCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCC
Confidence            444 33345666666655    356677899999999888888876653

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.66  E-value=0.54  Score=43.48  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             cccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC---CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308          56 NETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA---PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI  132 (311)
Q Consensus        56 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~---n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~  132 (311)
                      -+|+.|+...+..+|+.|..        .|..+||+ |.++..   +.- -+-..+|+.++|+.++|+++. .-+....+
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~--------~g~~~gd~-v~~~~~yGl~tg-g~~~~~ga~rig~~vip~~~g-~~~~~~~l  177 (438)
T COG1541         109 GYTAKDIERWAELLARSLYS--------AGVRKGDK-VQNAYGYGLFTG-GLGLHYGAERIGATVIPISGG-NTERQLEL  177 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHH--------ccCCCCCE-EEEEeeeccccC-CchhHHHHHhhCEEEEccCCc-cHHHHHHH
Confidence            57999999999999999975        47778897 444433   111 167789999999999999994 55666778


Q ss_pred             HHHcCCcEEEecCch
Q psy8308         133 LNEARPLLVIAENEQ  147 (311)
Q Consensus       133 l~~s~~~~vi~~~~~  147 (311)
                      +++.++.++.+....
T Consensus       178 ~~df~~tvI~~tps~  192 (438)
T COG1541         178 MKDFKPTVIAATPSY  192 (438)
T ss_pred             HHhcCCcEEEEChHH
Confidence            899999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-62
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-62
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-59
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-59
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-58
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-56
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	3e-56
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	4e-27
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-26
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-25
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-24
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	6e-24
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-24
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-23
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-22
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-22
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-21
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-20
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-20
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-19
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-19
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-18
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-18
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	9e-18
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-17
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	7e-16
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-14
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score =  204 bits (522), Expect = 2e-62
 Identities = 60/281 (21%), Positives = 110/281 (39%), Gaps = 33/281 (11%)

Query: 24  QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVP 83
           +L    + +A   P   A   + Q   +L     TY EL   S++ A      +  +   
Sbjct: 2   KLLHAIQTHAETYPQTDAFRSQGQ---SL-----TYQELWEQSDRAA----AAIQKRISG 49

Query: 84  NENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA 143
            +       + V       +I   L   KAG  Y+P+D++ P +R+  I+  +   L+I 
Sbjct: 50  EK----KSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIH 105

Query: 144 ENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSG 203
               + + +  + +  +S  +L          ++  +  +              ++YTSG
Sbjct: 106 AAGLSIDAVGQQIQ-TVSAEELLENEGG----SVSQDQWVKEHE-------TFYIIYTSG 153

Query: 204 STGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG 263
           STG PKGV++    + +   W  A FP S  +     +   +F  +V +++  L S   G
Sbjct: 154 STGNPKGVQISAANLQSFTDWICADFPVSGGKIF-LNQAPFSFDLSVMDLYPCLQS---G 209

Query: 264 GVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
           G L    +D    P  L   L+K  +      PS ++  LM
Sbjct: 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLM 250

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score =  203 bits (519), Expect = 7e-62
 Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 34/281 (12%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAV-P 83
           L    EK AA +PD TA ++ +     +     TY +L   S+ LA    H++ ++    
Sbjct: 3   LLEQIEKWAAETPDQTAFVWRDA---KI-----TYKQLKEDSDALA----HWISSEYPDD 50

Query: 84  NENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA 143
                    + V       +I   L   KAG AY+P+D++ P  RV+ I   +   L+++
Sbjct: 51  ------RSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS 104

Query: 144 ENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSG 203
                  +L  +   ++S   L+ +  +   N    E  +  D           ++YTSG
Sbjct: 105 ATAVTVTDLPVR---IVSEDNLKDIFFTHKGNTPNPEHAVKGDE-------NFYIIYTSG 154

Query: 204 STGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG 263
           STG PKGV++ +  +++   W    F     +     +   +F  +V +I+  L++   G
Sbjct: 155 STGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVF-LNQAPFSFDLSVMDIYPSLVT---G 210

Query: 264 GVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
           G L    +D+   P  L  +LE+  ++     PS     LM
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score =  197 bits (503), Expect = 2e-59
 Identities = 62/284 (21%), Positives = 114/284 (40%), Gaps = 36/284 (12%)

Query: 22  EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKA 81
            K +    E+ A    D        +          TY +L   S+ +A     F+ + A
Sbjct: 3   LKDMIDSIEQFAQTQADFPVYDCLGE---RR-----TYGQLKRDSDSIA----AFIDSLA 50

Query: 82  VPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLV 141
           +          V V  A +  ++   +A+ K+G AY+P+DV +  +R+  I+  A+P L+
Sbjct: 51  LLA-----KSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105

Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
           IA  E+    +       LS  +   L+    +        +  D+N         +++T
Sbjct: 106 IAI-EEFPLTIEGISLVSLSEIESAKLAEM-PYERTHS---VKGDDN-------YYIIFT 153

Query: 202 SGSTGIPKGVRLPHEVILNRLAW--QWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS 259
           SG+TG PKGV++ H+ +L+   W  + A F      ++   +   +F  +V      L  
Sbjct: 154 SGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQM-LAQPPYSFDLSVMYWAPTLAL 212

Query: 260 ARCGGVLII-PRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
              GG L   P+++  +  QL  T+ +  V      PS     +
Sbjct: 213 ---GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score =  197 bits (504), Expect = 2e-59
 Identities = 54/293 (18%), Positives = 99/293 (33%), Gaps = 32/293 (10%)

Query: 21  KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNE--TYSELNSASNQLARGLLHFLH 78
                    E  A   P+  A+        +  I  E  TY +LN  +NQ+A    + + 
Sbjct: 18  STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVA----NLII 73

Query: 79  TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP 138
             ++          +AVSL  S     +++ + K+G  Y+P++   P  R   +L ++R 
Sbjct: 74  HASLHGR------AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRA 127

Query: 139 LLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIV 198
            +    +             VL       +    + +     +    +         A +
Sbjct: 128 AMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENL-------DAYL 180

Query: 199 LYTSGSTGIPKGVRLPHEVILNRLAWQ--------WATFPYSPSERVGAFKTALTFVDAV 250
           LYTSGSTG PKGVR+    + +               +       +      +  F   +
Sbjct: 181 LYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL-ASRAFDVHI 239

Query: 251 SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
            E++        G   +    ++   D L  T  +  V    +VPSLL    +
Sbjct: 240 GEMFLAWRF---GLCAVTGERLSM-LDDLPRTFRELGVTHAGIVPSLLDQTGL 288

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score =  196 bits (500), Expect = 1e-58
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 34/284 (11%)

Query: 21  KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTK 80
           ++K +H++FE+  +  P+N A++ E +    L     TY ELN  +NQLA         K
Sbjct: 37  RDKTIHQLFEEQVSKRPNNVAIVCENE---QL-----TYHELNVKANQLA----RIFIEK 84

Query: 81  AV-PNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPL 139
            +        D +V + +  S  L   +LAV KAG AY+P+D+  P++R+++IL++++  
Sbjct: 85  GIGK------DTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQAR 138

Query: 140 LVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
           +++ + +     +                       N+   S         +S D+A V+
Sbjct: 139 MLLTQ-KHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPS---------KSTDLAYVI 188

Query: 200 YTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS 259
           YTSG+TG PKG  L H+ I N   +   +   +  +R+     +++F  +V E++  LL+
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRI-GQFASISFDASVWEMFMALLT 247

Query: 260 ARCGGVL-IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
              G  L II +D   +  +    + + ++  + L P+ +  + 
Sbjct: 248 ---GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD 288

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score =  195 bits (499), Expect = 1e-56
 Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 37/292 (12%)

Query: 13  DTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARG 72
             A    ++ K L   F++    +PD  AL +  Q   TL     +Y EL+  +N++A  
Sbjct: 456 PPAQA--HETKPLTYWFKEAVNANPDAPALTYSGQ---TL-----SYRELDEEANRIA-- 503

Query: 73  LLHFLHTKAV-PNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKH 131
               L               +VA+    S  L+  +L V KAGAAYLP+D   PE R+ +
Sbjct: 504 --RRLQKHGAGK------GSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISY 555

Query: 132 ILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQ 191
           +L ++    ++   E   E  A    T  +L            ++               
Sbjct: 556 MLADSAAACLLTHQEMK-EQAAELPYTGTTLFIDDQTRFEEQASDPATAI---------D 605

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS 251
            ND A ++YTSG+TG PKG    H  I   +        +S  +      +   F     
Sbjct: 606 PNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV-DYMAFSDQDTF-LSVSNYAFDAFTF 663

Query: 252 EIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           + +  +L+      ++I       + ++L   + +  V  +    +L   + 
Sbjct: 664 DFYASMLN---AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLT 712

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score =  190 bits (486), Expect = 3e-56
 Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 40/283 (14%)

Query: 21  KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTK 80
               +   F + AAL P   A+        ++      Y +L  ++ QL+     +L   
Sbjct: 25  AHPTVVARFSEMAALHPHREAIRDRFG---SV-----DYRQLLDSAEQLS----DYLLEH 72

Query: 81  AV-PNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPL 139
              P         + V    S   I  LLA+  +G  YL +D+  P      +  +    
Sbjct: 73  YPQP------GVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCR 126

Query: 140 LVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
           L++  +          G   + +  L    AS             +D        IA + 
Sbjct: 127 LILDCSTTP---TPANGLPCVPVRHLPAAPAS------VARPCFAADQ-------IAYIN 170

Query: 200 YTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS 259
           ++SG+TG PK +   H  I  RL    +   ++P  R     + L+F  A  EIWG LL+
Sbjct: 171 FSSGTTGRPKAIACTHAGI-TRLCLGQSFLAFAPQMRF-LVNSPLSFDAATLEIWGALLN 228

Query: 260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
              GG  ++      +P  L   + +   +   L  SL  +++
Sbjct: 229 ---GGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV 268

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  109 bits (275), Expect = 4e-27
 Identities = 40/298 (13%), Positives = 94/298 (31%), Gaps = 54/298 (18%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L     K A  +  + A+   ++          TY  L   ++ LA+ L           
Sbjct: 3   LDFWLYKQAQQNGHHIAITDGQES--------YTYQNLYCEASLLAKRL-------KA-- 45

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPLLVI 142
                   V + +  S   I ++ A W A      ++   T  E  + + +      L+ 
Sbjct: 46  --YQQSR-VGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE--MTNQMRSIDVQLIF 100

Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQS---------- 192
                            +      + +  L  N +  +    ++    +           
Sbjct: 101 CTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSF 160

Query: 193 --NDIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGA----FKTA-L 244
             +DIA +++TSG+TG  K V         + +  +  +  +       +    +  + L
Sbjct: 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK-ESLGFDRDTNWLSVLPIYHISGL 219

Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           + +         ++    G  + I      N +Q++  ++  ++  + LVP  L  ++
Sbjct: 220 SVL------LRAVIE---GFTVRIVDKF--NAEQILTMIKNERITHISLVPQTLNWLM 266

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  107 bits (269), Expect = 3e-26
 Identities = 62/290 (21%), Positives = 106/290 (36%), Gaps = 46/290 (15%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           +  +  + A +SP   A +    D         TY+++N+ +N+ A  L        +  
Sbjct: 18  IGWMLRQRATVSPRLQAYVEPSTDVRM------TYAQMNALANRCADVLT----ALGI-- 65

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPLLVI 142
               GD  VA+ +  S     +     K GA  +P++    APE  V  IL+++   +VI
Sbjct: 66  --AKGDR-VALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPE--VSFILSDSGSKVVI 120

Query: 143 AENE-----QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAI 197
                     A    A    TV        L+  L        ++    +      D   
Sbjct: 121 YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGD------DNLF 174

Query: 198 VLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGA----FKTALTFVDAVSE 252
           ++YTSG+TG PKGV   HE V     +W  +T      +R+      F  A     A++ 
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWA-STIDVRYRDRLLLPLPMFHVA-----ALTT 228

Query: 253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           +    +    G  LI          ++   + + +V     VP++L  M 
Sbjct: 229 VIFSAMR---GVTLISMPQFD--ATKVWSLIVEERVCIGGAVPAILNFMR 273

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  104 bits (262), Expect = 2e-25
 Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 40/287 (13%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L  ++ +NAAL PD TA + +      L     T+ +  + + +LA GLL       V  
Sbjct: 8   LADVYRRNAALFPDRTAFMVDGV---RL-----THRDYLARAERLASGLLR----DGV-- 53

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPLLVI 142
               GD  VA+     S +I+++ AV   GA  LP++    A E  +  +L +  P +V+
Sbjct: 54  --HTGDR-VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADE--IAFVLGDGAPSVVV 108

Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNE---QSNDIAIVL 199
           A  +    ++       L   +        S    P + +      +     + D  +++
Sbjct: 109 AGTDYR--DIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVII 166

Query: 200 YTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA----VSEIWG 255
           +T+   G P+G  +    +L   +     +  + ++                  V+ +  
Sbjct: 167 HTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVN--------LGMLPLFHVTGLGL 218

Query: 256 PLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            L   + GG  +I      +P Q    +E +KV  +     +L ++L
Sbjct: 219 MLTLQQAGGASVIAAKF--DPAQAARDIEAHKVTVMAEFAPMLGNIL 263

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  100 bits (252), Expect = 4e-24
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 38/213 (17%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
              +         D  AL F E+   +L     TY+EL +A+   A  +           
Sbjct: 25  FPALSPAPTGAPADRPALRFGER---SL-----TYAELAAAAGATAGRI----------- 65

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                   VAV   P+      ++A   AG A +PL+  + ++ + HIL+++ P LV+A 
Sbjct: 66  --GGAGR-VAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP 122

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
            +              +L  L  +   +       E             D A+V+YTSG+
Sbjct: 123 PDAE---------LPPALGALERVDVDVRARGAVPEDGADDG-------DPALVVYTSGT 166

Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERV 237
           TG PKG  +P   +   L      + ++  + +
Sbjct: 167 TGPPKGAVIPRRALATTLDALADAWQWTGEDVL 199

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  100 bits (252), Expect = 6e-24
 Identities = 49/291 (16%), Positives = 87/291 (29%), Gaps = 39/291 (13%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
                 +        TA I +            TY EL   + + A      L T  V  
Sbjct: 25  FAAYLFRLNETRAGKTAYIDDTGST--------TYGELEERARRFA----SALRTLGV-- 70

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPLLVI 142
                +  + + +  +  L    L    AG   +  +   T  +    ++L  +    VI
Sbjct: 71  --HPEER-ILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPAD--YVYMLTHSHARAVI 125

Query: 143 AENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHS---------DNNNEQSN 193
           A      +N+  +          +L+ +    +      +                   +
Sbjct: 126 ASGALV-QNVT-QALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCD 183

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVIL-NRLAWQWATFPYSPSERV-GAFKTALTFVDAVS 251
           DIA  LY+SGSTG PKG    H  +      +       + ++ V  A K    +     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAY----- 238

Query: 252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            +   L      G   I        D +   L +++      VP+L  +ML
Sbjct: 239 GLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANML 289

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  100 bits (251), Expect = 6e-24
 Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 46/290 (15%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           ++ +  + A  +PD+ AL    +          T++EL +    +A  L        +  
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRL------THAELRARVEAVAARLH----ADGL-- 51

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILN--EARPLL 140
             +     VAV    S+ ++  +LA+ + GA    L+    + E  +  ++   E    +
Sbjct: 52  --RPQQR-VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAE--LAELIKRGEMTAAV 106

Query: 141 VIAENEQA-CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVL 199
           +    + A     +  G  ++ L  L       S+     +               A + 
Sbjct: 107 IAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA-------QPAFIF 159

Query: 200 YTSGSTGIPKGVRLPHEVILNRLAW--QWATFPYSPSERVGA----FKTA-LTFVDAVSE 252
           YTSG+TG+PK   +P     +R+ +        +     V      +             
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFF------- 212

Query: 253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
               + +    G  ++  +    P   +  +++ +V  L   P+ L ++ 
Sbjct: 213 -AVLVAALALDGTYVVVEEF--RPVDALQLVQQEQVTSLFATPTHLDALA 259

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 99.2 bits (248), Expect = 2e-23
 Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 43/298 (14%)

Query: 19  IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
            Y +  L    +  A    + TA+I  E    +    +  + E+   + +LA G+     
Sbjct: 15  YYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGV 74

Query: 79  TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEA 136
            K        G+H V V +  S   +  + A+W+  A  +P++    + E  ++HILN++
Sbjct: 75  RK--------GEH-VGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFE--LEHILNDS 123

Query: 137 RPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQS---- 192
               ++         L    + VL    +  +   +         ++ S + + ++    
Sbjct: 124 EATTLVVH-----SMLYENFKPVLEKTGVERV-FVVGGEVNSLSEVMDSGSEDFENVKVN 177

Query: 193 --NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAF-----KTALT 245
              D+A++ YT G+TG+PKGV L H  +             S  + +             
Sbjct: 178 PEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237

Query: 246 FVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            V          L    G   +++      N + L   +EKYK      VP  L  ++
Sbjct: 238 LV---------NLMVTVGNEYVVMGM---FNQEMLAENIEKYKGTFSWAVPPALNVLV 283

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 40/281 (14%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNE-TYSELNSASNQLARGLLHFLHTKAVP 83
           L       A L P + A  F + ++D   +    T+S+L   +  +A+ L     T    
Sbjct: 26  LPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGST---- 81

Query: 84  NENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQ---RVKHILNEARPLL 140
                GD  V +S       +   L   +AG   +PL V        R   +L+++ P+ 
Sbjct: 82  -----GDR-VVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVA 135

Query: 141 VIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLY 200
           ++  +    +++              ++   L   + P       D    +    A + Y
Sbjct: 136 ILTTSSAV-DDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKED----EYPSTAYLQY 190

Query: 201 TSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL--- 257
           TSGST  P GV + H+ +        + +              ++        W P    
Sbjct: 191 TSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVS--------WLPFYHD 242

Query: 258 ----------LSARCGGVLIIPRDVTRNPDQLIGTLEKYKV 288
                     +      VL  P    + P + +  +     
Sbjct: 243 MGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFH 283

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 95.1 bits (237), Expect = 5e-22
 Identities = 61/280 (21%), Positives = 106/280 (37%), Gaps = 47/280 (16%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L  +    A  SP+  +  F  ++ +  +    TY +L+  +  +A  L       A P 
Sbjct: 13  LVDVVRLRALHSPNKKSCTFLNKELEETM----TYEQLDQHAKAIAATLQA---EGAKP- 64

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQ---RVKHILNEARPLLV 141
               GD  V +  AP   LIQ  L    AG   +P+   A E+   + + I+  ++P++V
Sbjct: 65  ----GDR-VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIV 119

Query: 142 IAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYT 201
           +   +   +  A +  T     ++  ++      N        S      SNDIA + YT
Sbjct: 120 LMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIK----SNDIAFLQYT 175

Query: 202 SGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL---- 257
           SGST  PKGV + H  +L+ L   + +F  +    +             S  W P     
Sbjct: 176 SGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETII------------FS--WLPPHHDM 221

Query: 258 ---------LSARCGGVLIIPRDVTRNPDQLIGTLEKYKV 288
                    +      +++ P    +NP   +  + KYK 
Sbjct: 222 GLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKA 261

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 55/284 (19%), Positives = 108/284 (38%), Gaps = 50/284 (17%)

Query: 32  NAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDH 91
           +    P   A+       D +     +Y+EL + + ++A  L+     + +    Q GD 
Sbjct: 11  DKLDDPHKLAIETA--AGDKI-----SYAELVARAGRVANVLVA----RGL----QVGDR 55

Query: 92  IVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPLLVIAENE--- 146
            VA     S   + + LA  +AG  YLPL+   T  E  + + + +A P +V+ +     
Sbjct: 56  -VAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHE--LDYFITDAEPKIVVCDPSKRD 112

Query: 147 ---QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSG 203
                   +     T+    +  L  A+   +         +D       D+A +LYTSG
Sbjct: 113 GIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGAD-------DLAAILYTSG 165

Query: 204 STGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGA----FKT-ALTFVDAVSEIWGPLL 258
           +TG  KG  L H+ + +        + ++P + +      + T  L             +
Sbjct: 166 TTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLF--------VASNV 217

Query: 259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           +    G +I       +PD+++  +   +   L+ VP+    +L
Sbjct: 218 TLFARGSMIFLPKF--DPDKILDLMA--RATVLMGVPTFYTRLL 257

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 48/299 (16%), Positives = 98/299 (32%), Gaps = 61/299 (20%)

Query: 30  EKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDG 89
            + A   P + AL +       L+     + EL+  S Q A  L      +        G
Sbjct: 50  MEKAGKRPPSPALWWVNGKGKELMWN---FRELSENSQQAANVLSGACGLQR-------G 99

Query: 90  DHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC 149
           D  VAV L        V+L   +AG  ++P  +      + + L  ++   ++A +E   
Sbjct: 100 DR-VAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI- 157

Query: 150 ENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQ-----SNDIAIVLYTSGS 204
           + +        SL    L+S       +  + +L+  +         S + + + +TSG+
Sbjct: 158 QEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGT 217

Query: 205 TGIPKGVRLPH-------------------EVILNRLAWQWATFPYSPSERVGAFKTALT 245
           +G+PK     +                   +++       W                   
Sbjct: 218 SGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCS------------ 265

Query: 246 FVDAVSEIWGPLLSARCGGVLIIPRDVTR-NPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
                  +  P       G       + + +P  ++ TL  Y ++ ++  P + R ML+
Sbjct: 266 -------LMEPWAL----GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR-MLL 312

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 41/295 (13%)

Query: 20  YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHT 79
           +++  L  I  ++AA   D+ A+I  E+    L     +Y ELN A++ LA  L      
Sbjct: 24  WQDLPLTDILTRHAA--SDSIAVIDGER---QL-----SYRELNQAADNLACSLRR-QGI 72

Query: 80  KAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEAR 137
           K        G+    V L   + L     A+ K G A +         E  +    ++  
Sbjct: 73  KP-------GET-ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSE--LNAYASQIE 122

Query: 138 P-LLVIAENEQACENLAYKGRTVLSLPQLRLL-----SASLSHNNIPGESMLHSDNNNEQ 191
           P LL+            +    V     +R++     S   +  +               
Sbjct: 123 PALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSP 182

Query: 192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL----TFV 247
           ++++A    + G+TG PK +   H      +        ++   R      A+     + 
Sbjct: 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLC---AIPAAHNYA 239

Query: 248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
            +     G  L+   GG +++  D   +       +EK++V    LVP  +   L
Sbjct: 240 MSSPGSLGVFLA---GGTVVLAADP--SATLCFPLIEKHQVNVTALVPPAVSLWL 289

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 56/297 (18%), Positives = 105/297 (35%), Gaps = 41/297 (13%)

Query: 20  YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHT 79
           + ++ L RI        P + A+I  E+    L     +Y EL+  S  LA  L      
Sbjct: 27  WIDQPLTRILTVGVQSHPHSLAIICGER---QL-----SYIELDRLSTNLATRLAE---- 74

Query: 80  KAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEAR 137
           K +      GD    V L   +    V  A+ KAG   L         E  +   + + +
Sbjct: 75  KGL----GKGDT-ALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYE--LNAFIKQIQ 127

Query: 138 P-LLVIAENEQACENLAYKGRTVLSLPQLRLL-------SASLSHNNIPGESMLHSDNNN 189
           P LL+ +   +   N  +            ++       +     + I   +    D ++
Sbjct: 128 PKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSS 187

Query: 190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL----T 245
             ++++A    + GSTG PK +   H      +         + + R+     AL     
Sbjct: 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLC---ALPAPHN 244

Query: 246 FVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
           F+ +     G L +   GG +++  +    P      +++++V    LVPS +   L
Sbjct: 245 FMLSSPGALGVLHA---GGCVVMAPNP--EPLNCFSIIQRHQVNMASLVPSAVIMWL 296

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 86.0 bits (214), Expect = 6e-19
 Identities = 55/293 (18%), Positives = 106/293 (36%), Gaps = 37/293 (12%)

Query: 20  YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHT 79
           +  +    +    AA   D  A+               +Y EL++ +++LA G    L  
Sbjct: 22  WAGETFGDLLRDRAAKYGDRIAITCGNT---HW-----SYRELDTRADRLAAGFQK-LGI 72

Query: 80  KAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDV--TAPEQRVKHILNEAR 137
           +         D  V V L       +V+ A+++ GA  +       + E  + +    A 
Sbjct: 73  QQ-------KDR-VVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSE--ITYFCEFAE 122

Query: 138 P-LLVIAENEQACENLAYKGRTVLSLPQLR-LLSASLSHNNIPGESMLHSDNNNEQ--SN 193
               +I +     +  +   +    LP L+ ++ A  +   +P E +        +  S+
Sbjct: 123 AAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 194 DIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTAL----TFVDA 249
           D+A +  + GSTG+ K +   H+  +  L           S    A   AL     +  +
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLA---ALPMAHNYPLS 239

Query: 250 VSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
              + G L +   GG +++      +PD     +E+ KV    LVP L    +
Sbjct: 240 SPGVLGVLYA---GGRVVLSPSP--SPDDAFPLIEREKVTITALVPPLAMVWM 287

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 85.3 bits (212), Expect = 1e-18
 Identities = 52/324 (16%), Positives = 98/324 (30%), Gaps = 101/324 (31%)

Query: 28  IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
           + +  A  SP+  A+I+ +   +  + T   + +L   S++ A    +F     +     
Sbjct: 61  VVDVYARDSPEKLAMIWCDDYGNEKIFT---FKDLKYYSDKAA----NFFVKHGI----G 109

Query: 88  DGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPL-------D-------------VTAPEQ 127
            GD+ V ++L         +L + K GA  +P        D             V   E 
Sbjct: 110 KGDY-VMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED 168

Query: 128 RVKHILNEARPLLVIAENEQACENLAYKGRTV--------LSLPQLRLLSASLSHNNIPG 179
            V   ++EA            C ++  K   V        +   +  L  +S       G
Sbjct: 169 DVPEQVDEAHA---------ECGDIPLKKAKVGGDVLEGWIDFRKE-LEESSPIFERPTG 218

Query: 180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPH-------------------EVILN 220
           E    ++       DI +V ++SG+ G PK V   +                    +   
Sbjct: 219 EVSTKNE-------DICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYT 271

Query: 221 RLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTR-NPDQL 279
                W    +                     ++G  ++    G  +   D  R     +
Sbjct: 272 VADSGWGKCVWGK-------------------LYGQWIA----GCAVFVYDYDRFEAKNM 308

Query: 280 IGTLEKYKVERLVLVPSLLRSMLM 303
           +    KY V      P++ R  L+
Sbjct: 309 LEKASKYGVTTFCAPPTIYR-FLI 331

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 62/320 (19%), Positives = 111/320 (34%), Gaps = 52/320 (16%)

Query: 1   MDPNYLSILKGRDTALEKIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYS 60
           M+P    I + +   +  I K   LH    +N +       LI              TY+
Sbjct: 1   MNPQEEFIFRSKLPDIY-IPKNLPLHSYVLENLSNHSSKPCLINGANGDVY------TYA 53

Query: 61  ELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPL 120
           ++   + ++A GL      +        GD  + + L  S   +   L     GA     
Sbjct: 54  DVELTARRVASGLNKIGIQQ--------GDV-IMLFLPSSPEFVLAFLGASHRGAIITAA 104

Query: 121 DV--TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLR-LLSASLSHNNI 177
           +   T  E  +      +R  L+I            K +       ++ +   S     +
Sbjct: 105 NPFSTPAE--LAKHAKASRAKLLIT-----QACYYEKVKDFARESDVKVMCVDSAPDGCL 157

Query: 178 PGESMLHSDNNNEQS-----NDIAIVLYTSGSTGIPKGVRLPHE-VILNRL---AWQWAT 228
               +  +D N         +D+  + Y+SG+TG+PKGV L H+ +I +           
Sbjct: 158 HFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPN 217

Query: 229 FPYSPSERVGAF-----KTALTFVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGT 282
             +   + +          AL  +         L   R G  +LI+P+        L+G 
Sbjct: 218 LYFHSEDVILCVLPMFHIYALNSI--------MLCGLRVGAPILIMPK---FEIGSLLGL 266

Query: 283 LEKYKVERLVLVPSLLRSML 302
           +EKYKV    +VP ++ S+ 
Sbjct: 267 IEKYKVSIAPVVPPVMMSIA 286

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 55/302 (18%), Positives = 104/302 (34%), Gaps = 61/302 (20%)

Query: 31  KNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGD 90
           K  AL P   A      + +       TY+E    S +LA  +  +              
Sbjct: 31  KRYALVPGTIAFTDAHIEVNI------TYAEYFEMSVRLAEAMKRYGLNT--------NH 76

Query: 91  HIVAVSLAPSSGLIQ---VLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPLLVIAEN 145
             + V  + +S  +Q    +L     G A  P +      E  + + +N ++P +V    
Sbjct: 77  R-IVV-CSENS--LQFFMPVLGALFIGVAVAPANDIYNERE--LLNSMNISQPTVVFVSK 130

Query: 146 E------QACENLAYKGRTVL------SLPQLRLLSASLSHNNIPGESMLHSDNNNEQSN 193
           +         + L    + ++            + +   SH             + ++  
Sbjct: 131 KGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDK 190

Query: 194 DIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFP--YSPSERVGAF-----KTALT 245
            IA+++ +SGSTG+PKGV LPH    +     +   F     P   + +         + 
Sbjct: 191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF 250

Query: 246 FVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF 304
                      L    CG  V+++ R      +  + +L+ YK++  +LVP+L      F
Sbjct: 251 TT---------LGYLICGFRVVLMYR---FEEELFLRSLQDYKIQSALLVPTL---FSFF 295

Query: 305 LK 306
            K
Sbjct: 296 AK 297

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 76.9 bits (190), Expect = 7e-16
 Identities = 48/311 (15%), Positives = 104/311 (33%), Gaps = 55/311 (17%)

Query: 20  YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHT 79
            +E        K         A+ F             +Y+E    S  L + L ++   
Sbjct: 20  IEEGSAGTQLRKYMERYAKLGAIAFTNAVTGVDY----SYAEYLEKSCCLGKALQNYGLV 75

Query: 80  KAVPNENQDGDHIVAVSLAPSSGLIQ---VLLAVWKAGAAYLPLDVTAPEQRVKHILNEA 136
                        +A+  + +    +    ++A    G    P +     + + H L  +
Sbjct: 76  V--------DGR-IAL-CSENC--EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGIS 123

Query: 137 RPLLVIAENE------QACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNN- 189
           +P +V +  +         + +      V+   ++           I   +      ++ 
Sbjct: 124 KPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF 183

Query: 190 -----EQSNDIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFP--YSPSERVGAF- 240
                ++   +A+++ +SGSTG+PKGV+L HE ++      +   +    SP   V    
Sbjct: 184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVV 243

Query: 241 ----KTALTFVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVP 295
                  +            L    CG  V+++ +    + +  + TL+ YK   ++LVP
Sbjct: 244 PFHHGFGMFTT---------LGYLICGFRVVMLTK---FDEETFLKTLQDYKCTSVILVP 291

Query: 296 SLLRSMLMFLK 306
           +L     +  K
Sbjct: 292 TL---FAILNK 299

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 51/303 (16%), Positives = 101/303 (33%), Gaps = 52/303 (17%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           LH    +N +       LI              TYS+++  S Q+A         +    
Sbjct: 63  LHDYIFQNISEFATKPCLINGPTGHVY------TYSDVHVISRQIAANFHKLGVNQ---- 112

Query: 85  ENQDGDHIVAVSLAPSSGLIQ---VLLAVWKAGAAYLPLDV--TAPEQRVKHILNEARPL 139
                D +V + L P+    +     LA    GA     +   T  E  +      +   
Sbjct: 113 ----ND-VVML-LLPNC--PEFVLSFLAASFRGATATAANPFFTPAE--IAKQAKASNTK 162

Query: 140 LVIAENEQACENLAYKGRTVLSLPQLRLLS---ASLSHNNIPGESMLHSDNNNEQS---- 192
           L+I E      +     +    +  + +       +    +    +  S     +     
Sbjct: 163 LIITEARYV--DKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSV 220

Query: 193 ----NDIAIVLYTSGSTGIPKGVRLPHE----VILNRLAWQWATFPYSPSERVGAFKTAL 244
               +D+  + Y+SG+TG+PKGV L H+     +  ++  +     +   + +      L
Sbjct: 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCV---L 277

Query: 245 TFVDAVSEIWGPLLSARCGG-VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM 303
                 +     L   R G  +LI+P+      + L+  +++ KV    +VP +   +L 
Sbjct: 278 PMFHIYALNSIMLCGLRVGAAILIMPK---FEINLLLELIQRCKVTVAPMVPPI---VLA 331

Query: 304 FLK 306
             K
Sbjct: 332 IAK 334

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSER----VGAFKTALTFVD 248
           +    V  + G+TG PK V      I   ++W+ + + + P       + A  T    V 
Sbjct: 91  DSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVG 150

Query: 249 AVSEIWGPLLSARCGGVLIIPRDVTR----------------NPDQLIGTLEKYKVERLV 292
           A+++     L      + I PR V R                  DQ+  TL    +  LV
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV 210

Query: 293 LVPSLLRSML 302
             P +LR +L
Sbjct: 211 TTPPVLRELL 220

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 38/257 (14%), Positives = 75/257 (29%), Gaps = 78/257 (30%)

Query: 1   MDPNYLSILKGRDTALEKIYKEKQ-LHRIFE----KNAALSPDN-----TALIFEEQDKD 50
           +DPN+ S          +I+  +  L R+ +    +N  L   N         F    K 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK- 267

Query: 51  TLVITNETYSELNSASNQLARGLLHFLHTKAVP-NENQDGDHIVAVSLAPSSGLIQVLLA 109
            L+ T          ++ L+        T  +  + +          L P       LL 
Sbjct: 268 ILLTTRFK-----QVTDFLS-----AATTTHISLDHHSMT-------LTPDEVK--SLLL 308

Query: 110 VWKAGAAYLPLDVTA---PEQRVKHILNEARPLLV--IAEN--EQAC--ENLAYKGRTVL 160
            +        LD      P + +        P  +  IAE+  +     +N  +     L
Sbjct: 309 KY--------LDCRPQDLPREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 161 SLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN 220
           +     ++ +SL+         L      +  + +++          P    +P  + L+
Sbjct: 356 T----TIIESSLNV--------LEPAEYRKMFDRLSV---------FPPSAHIPTIL-LS 393

Query: 221 RLAWQWATFPYSPSERV 237
            +   W     S    V
Sbjct: 394 LI---WFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.69
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.62
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.61
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.6
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.54
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	86.52
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	85.35

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=6.6e-39  Score=304.65  Aligned_cols=268  Identities=18%  Similarity=0.184  Sum_probs=192.6

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .++..++.++|.++++++||++|+.+.+.        ++||+||+++++++|++|++.        |+++||+ |+++++
T Consensus        21 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~   83 (539)
T 1mdb_A           21 CWAGETFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKL--------GIQQKDR-VVVQLP   83 (539)
T ss_dssp             SSCSCCHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEECCC
T ss_pred             cccCCCHHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcC
Confidence            34557899999999999999999987542        679999999999999999864        6778886 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh----hhhhhcccccccchhhhhhhcccCC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC----ENLAYKGRTVLSLPQLRLLSASLSH  174 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  174 (311)
                      |+++|+++++||+++|+++||+||.++.+++.+++++++++++|++.....    ............+..+.........
T Consensus        84 ~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (539)
T 1mdb_A           84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF  163 (539)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTS
T ss_pred             CcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccch
Confidence            999999999999999999999999999999999999999999999764211    0000000000000000000000000


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW  254 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
                      .................++|+++|+|||||||.||||++||+++...+......+.+.+.++..   ...++.|.++...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h~~~~~~  240 (539)
T 1mdb_A          164 LPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYL---AALPMAHNYPLSS  240 (539)
T ss_dssp             EEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEE---ECSCTTSHHHHHS
T ss_pred             hhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEE---EeecccccchhhH
Confidence            0000000000011234678999999999999999999999999988877666667777777643   3344444433221


Q ss_pred             -HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         255 -GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       255 -~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                       ..+..+..|+++++.+.  +++..+++.|+++++|++.++|+++..|+++.+..
T Consensus       241 ~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  293 (539)
T 1mdb_A          241 PGVLGVLYAGGRVVLSPS--PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR  293 (539)
T ss_dssp             SHHHHHHHTTCEEEECSS--SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCEEEECCC--CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc
Confidence             22333345778887764  47999999999999999999999999999887644

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=9.2e-39  Score=302.18  Aligned_cols=263  Identities=22%  Similarity=0.228  Sum_probs=190.6

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .....++.++|+++++++|+++|+++.+.+      +++||+||+++++++|++|++.        |+++||+ |+++++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~   76 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTAL--------GIAKGDR-VALLMP   76 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHc--------CCCCcCE-EEEEcC
Confidence            445679999999999999999999976432      2679999999999999999863        7788886 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc--c---ccccchhhhhhhcccC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG--R---TVLSLPQLRLLSASLS  173 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~  173 (311)
                      |+++|++++|||+++|+++||+||.++.+++.+++++++++++|++............  .   .+..+...........
T Consensus        77 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (517)
T 3r44_A           77 NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR  156 (517)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhh
Confidence            9999999999999999999999999999999999999999999997654322111100  0   0000000000000000


Q ss_pred             CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHH
Q psy8308         174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEI  253 (311)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      ....      ........++|+++|+|||||||.||||++||+++..........+.+.+.++...   ..+++|..+..
T Consensus       157 ~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~~~~  227 (517)
T 3r44_A          157 SAAA------DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLL---PLPMFHVAALT  227 (517)
T ss_dssp             HCCC------CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEE---CSCTTSHHHHH
T ss_pred             ccCc------CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEE---eCchHHHHHHH
Confidence            0000      01112346789999999999999999999999999988877777778888777533   23333333322


Q ss_pred             HHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         254 WGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      . .+.....|+++++.+.  +++..+++.|+++++|++.++|+++..|+++.+..
T Consensus       228 ~-~~~~~~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  279 (517)
T 3r44_A          228 T-VIFSAMRGVTLISMPQ--FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA  279 (517)
T ss_dssp             H-HHHHHHHTCEEEECSS--CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH
T ss_pred             H-HHHHHhcCeEEEEeCC--CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc
Confidence            1 1222224777777664  58999999999999999999999999999876644

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.2e-38  Score=299.07  Aligned_cols=262  Identities=19%  Similarity=0.208  Sum_probs=187.9

Q ss_pred             hhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          20 YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      ++..++.++|+++++++||++|+.+.+.        ++||+||+++++++|++|++.        |+++||+ |+++++|
T Consensus         3 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~   65 (509)
T 3ivr_A            3 LHDFTLADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRD--------GVHTGDR-VAILSQN   65 (509)
T ss_dssp             TTCCCHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCS
T ss_pred             CCcCCHHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCC
Confidence            3557899999999999999999997543        679999999999999999863        7788886 9999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcc-cCCCCCC
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSAS-LSHNNIP  178 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  178 (311)
                      +++|+++++|++++|+++||+||.++.+++.+++++++++++|++........... .....+......... .......
T Consensus        66 ~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  144 (509)
T 3ivr_A           66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSGPFAPFK  144 (509)
T ss_dssp             CHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCSSCEEGG
T ss_pred             CHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCcChhhHh
Confidence            99999999999999999999999999999999999999999999765432211111 000001111000000 0000000


Q ss_pred             C-CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhh
Q psy8308         179 G-ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL  257 (311)
Q Consensus       179 ~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
                      . ............++|+++|+|||||||.||||++||+++..........+.+.+.++....   .+++|..+......
T Consensus       145 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~---~p~~~~~g~~~~~~  221 (509)
T 3ivr_A          145 DLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGM---LPLFHVTGLGLMLT  221 (509)
T ss_dssp             GTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC---SCTTSHHHHHHHHH
T ss_pred             hccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEe---CCCcchhHHHHHHH
Confidence            0 0000111223567899999999999999999999999999888777777888888875433   33333333222111


Q ss_pred             HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      .....|..++..   .+++..+++.|+++++|++..+|+++..|+++.
T Consensus       222 ~~~~~g~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  266 (509)
T 3ivr_A          222 LQQAGGASVIAA---KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA  266 (509)
T ss_dssp             HHHHTCEEEECS---SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred             HHHhCCcEEEec---ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence            122234455554   358999999999999999999999999999865

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1.8e-38  Score=302.25  Aligned_cols=267  Identities=20%  Similarity=0.254  Sum_probs=194.6

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .++..++.++|.++++++||++|+++.+.......++++||+||+++++++|++|++.        |+++||+ |+++++
T Consensus        15 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~   85 (549)
T 3g7s_A           15 YYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRK--------GVRKGEH-VGVCIP   85 (549)
T ss_dssp             CCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred             CcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECC
Confidence            3456789999999999999999999876322112235789999999999999999863        7788896 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhccc----ccccch----hhhhhhc
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGR----TVLSLP----QLRLLSA  170 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~  170 (311)
                      |+++|+++++|++++|+++||+||.++.+++.+++++++++++|++.............    .+....    .+.....
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMD  165 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHh
Confidence            99999999999999999999999999999999999999999999976543221111100    000000    0000000


Q ss_pred             ccCCCCCCCCcccCCCCCCCC-CCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhh
Q psy8308         171 SLSHNNIPGESMLHSDNNNEQ-SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA  249 (311)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      ..   ..      ........ ++|+++|+|||||||.||||++||+++..........+.+.+.++..   ...+++|.
T Consensus       166 ~~---~~------~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~---~~~p~~~~  233 (549)
T 3g7s_A          166 SG---SE------DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIV---GCMPMFHS  233 (549)
T ss_dssp             HS---CS------CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEE---CCSCTTSH
T ss_pred             cC---cc------ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEE---EeCcHHHH
Confidence            00   00      00111122 38999999999999999999999999998877777777788777643   33444444


Q ss_pred             HHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         250 VSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       250 ~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      .+..+ .+.....|+.+++...  +++..+++.|+++++|+++++|+++..|+++.+..+
T Consensus       234 ~~~~~-~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  290 (549)
T 3g7s_A          234 AEFGL-VNLMVTVGNEYVVMGM--FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSN  290 (549)
T ss_dssp             HHHHH-HTTHHHHCCEEEEESS--CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSC
T ss_pred             HHHHH-HHHHHhcCceEEEcCC--CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhc
Confidence            33222 2333334777777653  589999999999999999999999999999876543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=5.2e-38  Score=298.77  Aligned_cols=265  Identities=21%  Similarity=0.249  Sum_probs=190.8

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .|...++.++|.++++++||++|+++.+.        ++||+||+++++++|++|++.        |+++||+ |+++++
T Consensus        26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~   88 (544)
T 3o83_A           26 YWIDQPLTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEK--------GLGKGDT-ALVQLP   88 (544)
T ss_dssp             SCCCCCTTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECCC
T ss_pred             CCCCCCHHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHC--------CCCCCCE-EEEECC
Confidence            45667899999999999999999997643        679999999999999999864        7788886 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh----hhhhcccccccchhhhhhhcccC-
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE----NLAYKGRTVLSLPQLRLLSASLS-  173 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-  173 (311)
                      |+++|+++++||+++|+++||+++.++.+++.+++++++++++|++......    ..............+........ 
T Consensus        89 n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (544)
T 3o83_A           89 NVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD  168 (544)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTS
T ss_pred             CCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccc
Confidence            9999999999999999999999999999999999999999999997643210    00000000000000000000000 


Q ss_pred             -----CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhh
Q psy8308         174 -----HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVD  248 (311)
Q Consensus       174 -----~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
                           ........  ........++|+++|+|||||||.||||++||+++...+......+.+.+.++...   .+++.|
T Consensus       169 ~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~---~~p~~h  243 (544)
T 3o83_A          169 FGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLC---ALPAPH  243 (544)
T ss_dssp             EEHHHHHHSCCSS--CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEE---CSCTTS
T ss_pred             cchhhhhhccccc--ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEE---ecCcce
Confidence                 00000000  01112345789999999999999999999999999988877777778888776533   334334


Q ss_pred             hHHHHH-HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         249 AVSEIW-GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       249 ~~~~~~-~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      .+...+ ..+.....|+++++...  +++..+++.|+++++|++.++|+++.+|+++.+.
T Consensus       244 ~~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  301 (544)
T 3o83_A          244 NFMLSSPGALGVLHAGGCVVMAPN--PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ  301 (544)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT
T ss_pred             EeecchHHHHHHHHcCCEEEECCC--CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh
Confidence            333221 12223334778877764  4799999999999999999999999999987653

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=3.1e-37  Score=290.88  Aligned_cols=256  Identities=16%  Similarity=0.218  Sum_probs=182.7

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|+++++++||++|+.+...+      +++||+||+++++++|++|++.        |+++||+ |+++++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~--------Gv~~gd~-V~i~~~~~~~   66 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHAD--------GLRPQQR-VAVVAPNSAD   66 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSCHH
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHH
Confidence            46889999999999999999875321      2679999999999999999863        7788886 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEe--cCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIA--ENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPG  179 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  179 (311)
                      |+++++|++++|+++||+||.++.+++.+++++++++++++  +........... ...+..++.+.   ...  .....
T Consensus        67 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~  141 (504)
T 1t5h_X           67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLV---RDG--EPYSY  141 (504)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTE---ETT--EECCC
T ss_pred             HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchh---hcC--ccccc
Confidence            99999999999999999999999999999999999999999  544322110111 11111111100   000  00000


Q ss_pred             CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCC--CCCCccceeecchhhhhhHHHHHHhh
Q psy8308         180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPY--SPSERVGAFKTALTFVDAVSEIWGPL  257 (311)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
                      ..  ........++|+++|+|||||||.||||++||+++..........+.+  .+.++.   +..+++.|..+..+..+
T Consensus       142 ~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~---l~~~p~~~~~g~~~~~~  216 (504)
T 1t5h_X          142 GP--PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV---LGLMPLYHVVGFFAVLV  216 (504)
T ss_dssp             SC--CCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEE---EECSCTTSHHHHTTTHH
T ss_pred             CC--ccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceE---EeecchhhcchHHHHHH
Confidence            00  001123457899999999999999999999999998877666555666  555543   33344444443322223


Q ss_pred             HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      .....|+++++.+.  ++|..+++.|+++++|+++++|+++..|+++.
T Consensus       217 ~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  262 (504)
T 1t5h_X          217 AALALDGTYVVVEE--FRPVDALQLVQQEQVTSLFATPTHLDALAAAA  262 (504)
T ss_dssp             HHHHTTCEEEECSS--CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred             HHHHcCceEEeCCC--CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhh
Confidence            33345778887764  47999999999999999999999999999876

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.1e-37  Score=296.25  Aligned_cols=249  Identities=25%  Similarity=0.324  Sum_probs=184.0

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|+++++++||++|+.+.+.        ++||+||+++++++|++|++.        |+++||+ |+++++|++
T Consensus        74 ~~~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~  136 (570)
T 4gr5_A           74 GACVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGL--------GVAPGTL-VGVHLERGF  136 (570)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSH
T ss_pred             cCCHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCH
Confidence            45899999999999999999997543        679999999999999999863        7788886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCc
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      +|+++++||+++|+++||+||.++.+++.+++++++++++|++........   .     ...+.......  ...    
T Consensus       137 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~---~-----~~~~~~~~~~~--~~~----  202 (570)
T 4gr5_A          137 DMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT---G-----TTTLYVEDEAA--SDA----  202 (570)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC---S-----SEEEECCC------------
T ss_pred             HHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc---C-----Ccceeeecccc--ccc----
Confidence            999999999999999999999999999999999999999999764321110   0     00000000000  000    


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                      ..........++|+++|+|||||||.||||++||+++...... .....+.+.++...+ .++.|......+   +....
T Consensus       203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~-~p~~~~~~~~~~---~~~l~  277 (570)
T 4gr5_A          203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQC-SPVSWDAFGLEL---FGALL  277 (570)
T ss_dssp             -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEEC-SCTTSSTHHHHH---HHHHT
T ss_pred             cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEe-cCccHHHHHHHH---HHHHh
Confidence            0011112346789999999999999999999999998755432 223345666654332 233332222222   33344


Q ss_pred             CCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         262 CGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       262 ~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .|+++++.....+++..+++.|+++++|++.++|+++..|+++.+
T Consensus       278 ~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  322 (570)
T 4gr5_A          278 FGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP  322 (570)
T ss_dssp             TTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG
T ss_pred             cCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch
Confidence            577777766556789999999999999999999999999987643

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=3.3e-37  Score=297.15  Aligned_cols=249  Identities=22%  Similarity=0.297  Sum_probs=187.9

Q ss_pred             hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308          18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL   97 (311)
Q Consensus        18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~   97 (311)
                      ..+...++.++|.++++++||++|+.+.+.        ++||+||+++++++|++|++.        |+++||+ |++++
T Consensus        22 ~~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~g~~-V~i~~   84 (620)
T 4dg8_A           22 DLYAHPTVVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEH--------YPQPGVC-LGVYG   84 (620)
T ss_dssp             SGGGSCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------CCSSCCE-EEEES
T ss_pred             CCCCCCCHHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEe
Confidence            345667999999999999999999997653        679999999999999999865        6778886 99999


Q ss_pred             CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCC
Q psy8308          98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNI  177 (311)
Q Consensus        98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (311)
                      +|+++|++++||++++|+++||+||.++.+++.+++++++++++++.........     ...... .   ... .  ..
T Consensus        85 ~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-----~~~~~~-~---~~~-~--~~  152 (620)
T 4dg8_A           85 EYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-----GLPCVP-V---RHL-P--AA  152 (620)
T ss_dssp             SSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-----TSCEEE-G---GGC-C--CC
T ss_pred             CCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-----CCceee-e---ccC-C--cC
Confidence            9999999999999999999999999999999999999999999996543221100     000000 0   000 0  00


Q ss_pred             CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhh
Q psy8308         178 PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPL  257 (311)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
                      ..    ........++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.+.++... ..++.|..+...++.++
T Consensus       153 ~~----~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~-~~p~~~~~~~~~~~~~l  226 (620)
T 4dg8_A          153 PA----SVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLV-NSPLSFDAATLEIWGAL  226 (620)
T ss_dssp             CC----CSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEE-CSCTTSTHHHHHHHHHH
T ss_pred             Cc----cccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEE-ECccCHHHHHHHHHHHH
Confidence            00    01112245789999999999999999999999998765433 33456677776543 34444544444444444


Q ss_pred             HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                         ..|+++++.+...++|..+++.|+++++|++.++|+++..|++.
T Consensus       227 ---~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~  270 (620)
T 4dg8_A          227 ---LNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL  270 (620)
T ss_dssp             ---TTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH
T ss_pred             ---hcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc
Confidence               44777777654456899999999999999999999999998864

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=5e-38  Score=298.39  Aligned_cols=267  Identities=20%  Similarity=0.266  Sum_probs=188.8

Q ss_pred             hhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC
Q psy8308          20 YKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP   99 (311)
Q Consensus        20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n   99 (311)
                      ....++.++|.++++++||++|+++...+      +++||+||+++++++|++|++.        |+++||+ |+++++|
T Consensus        19 p~~~~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~   83 (536)
T 3ni2_A           19 PKNLPLHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKI--------GIQQGDV-IMLFLPS   83 (536)
T ss_dssp             CSSCCHHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCS
T ss_pred             CCCCcHHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCC
Confidence            33468999999999999999999975432      2679999999999999999864        7788886 9999999


Q ss_pred             ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhhhhhhcccCCCC
Q psy8308         100 SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQLRLLSASLSHNN  176 (311)
Q Consensus       100 ~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  176 (311)
                      +++|+++++||+++|+++||+||.++.+++.+++++++++++|++...........   ...+..++...  ........
T Consensus        84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  161 (536)
T 3ni2_A           84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP--DGCLHFSE  161 (536)
T ss_dssp             SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCC--TTCEETHH
T ss_pred             cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCC--CCccCHHH
Confidence            99999999999999999999999999999999999999999999765332211110   11111010000  00000000


Q ss_pred             CCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh----hcCCCCCCccceeecchhhhhhHHH
Q psy8308         177 IPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA----TFPYSPSERVGAFKTALTFVDAVSE  252 (311)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
                      ...............++|+++|+|||||||.||||++||+++...+.....    .+.+.+.++..   ..++++|..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h~~~~  238 (536)
T 3ni2_A          162 LTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVIL---CVLPMFHIYAL  238 (536)
T ss_dssp             HHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEE---ECSCTTSHHHH
T ss_pred             HhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEE---EecChHHHHHH
Confidence            000000011122346789999999999999999999999999877654432    23455666543   33444444433


Q ss_pred             HHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       253 ~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      ....+.....|+++++.+.  +++..+++.|+++++|++.++|+++..|+++.+..
T Consensus       239 ~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  292 (536)
T 3ni2_A          239 NSIMLCGLRVGAPILIMPK--FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD  292 (536)
T ss_dssp             HHTHHHHHHHTCCEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG
T ss_pred             HHHHHHHHhcCCEEEEcCC--CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc
Confidence            2222333334777777664  47999999999999999999999999998865543

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1e-37  Score=294.67  Aligned_cols=254  Identities=25%  Similarity=0.379  Sum_probs=184.7

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.++|+++++++||++|+.+.+.        ++||+||+++++++|++|.+.        |+++||+ |+++++|+++|
T Consensus         2 ~l~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------g~~~gd~-V~i~~~n~~e~   64 (512)
T 3fce_A            2 KLLEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSE--------YPDDRSP-IMVYGHMQPEM   64 (512)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------STTCCCC-EEEEESSCHHH
T ss_pred             cHHHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEEeCCCHHH
Confidence            578999999999999999997653        679999999999999999865        6677886 89999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML  183 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (311)
                      ++++|||+++|+++||+||.++.+++.++++++++++++++........   .......+.+........ ....     
T Consensus        65 ~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~-----  135 (512)
T 3fce_A           65 IINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL---PVRIVSEDNLKDIFFTHK-GNTP-----  135 (512)
T ss_dssp             HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC---SSEEEETHHHHHHHHHTT-TCCC-----
T ss_pred             HHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc---ccceechhhhhhhccccc-ccCC-----
Confidence            9999999999999999999999999999999999999998644321110   111111111111100000 0000     


Q ss_pred             CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308         184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG  263 (311)
Q Consensus       184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (311)
                       .......++|+++|+|||||||.||||++||+++..........+.+.+.++.... .++.+..+...++.   ....|
T Consensus       136 -~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~~~~---~l~~G  210 (512)
T 3fce_A          136 -NPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQ-APFSFDLSVMDIYP---SLVTG  210 (512)
T ss_dssp             -CGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEEC-SCTTSGGGHHHHHH---HHHTT
T ss_pred             -CccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEe-CCccHhHHHHHHHH---HHhCC
Confidence             01112457899999999999999999999999999888777777788887765433 23333333333333   33346


Q ss_pred             cEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         264 GVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       264 ~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      +++++... ..++|..+++.|+++++|++..+|+++.+|+.+.+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  256 (512)
T 3fce_A          211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS  256 (512)
T ss_dssp             CEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS
T ss_pred             CEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc
Confidence            77776543 2257999999999999999999999999988765543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=9e-38  Score=292.52  Aligned_cols=264  Identities=17%  Similarity=0.229  Sum_probs=179.7

Q ss_pred             hhhhhHHHHHHHHHhhCCCceEEEecccC-ccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          20 YKEKQLHRIFEKNAALSPDNTALIFEEQD-KDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        20 ~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~-~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .+..++.++|+++++++||++|+++.+.. .....++++||+||.++++++|++|++        .| .+||+ |+++++
T Consensus        21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~--------~g-~~gd~-V~i~~~   90 (480)
T 3t5a_A           21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR--------CG-STGDR-VVISAP   90 (480)
T ss_dssp             ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT--------SS-CTTCE-EEEECC
T ss_pred             CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh--------cC-CCCCE-EEEEcC
Confidence            34568999999999999999999976521 111122478999999999999999974        25 47886 899999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCC---CCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccc--hhhhhhhcccC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDV---TAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSL--PQLRLLSASLS  173 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~---~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  173 (311)
                      |+++|++++||++++|+++||+|+   .++.+++.+++++++++++|++............ .....  ..+..... ..
T Consensus        91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~  168 (480)
T 3t5a_A           91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVA-RRPGESPPSIIEVDL-LD  168 (480)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGGG-SC
T ss_pred             CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHh-ccccccccceeEecc-cc
Confidence            999999999999999999999999   7889999999999999999997654332211111 00000  00000000 00


Q ss_pred             CCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCC------CCccceeecchhhh
Q psy8308         174 HNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSP------SERVGAFKTALTFV  247 (311)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  247 (311)
                      ...     ..........++++++|+|||||||.||||++||+++..++......+.+.+      .++.   +..++++
T Consensus       169 ~~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~---l~~~pl~  240 (480)
T 3t5a_A          169 LDA-----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL---VSWLPFY  240 (480)
T ss_dssp             TTC-----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEE---EECCCTT
T ss_pred             ccc-----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeE---EEeCCCc
Confidence            000     0011122346789999999999999999999999999887776666565555      4543   3345555


Q ss_pred             hhHHHHHHhhHhhcCCcEEEeCCCCC--CChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         248 DAVSEIWGPLLSARCGGVLIIPRDVT--RNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       248 ~~~~~~~~~~~~~~~g~~~v~~~~~~--~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      |..+..+..+..+..|+++++.....  ++|..+++.|+++++| +..+|+++..|+..
T Consensus       241 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~  298 (480)
T 3t5a_A          241 HDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAAR  298 (480)
T ss_dssp             STTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHh
Confidence            55443333333344477777765321  3799999999999999 88999999888875

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=5.2e-37  Score=291.71  Aligned_cols=268  Identities=18%  Similarity=0.206  Sum_probs=186.0

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++||++|+.+...+.    .+++||+||+++++++|++|++.        |+++||+ |+++++|+++
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~e   84 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGE----VHRTTYAEVYQRARRLMGGLRAL--------GVGVGDR-VATLGFNHFR   84 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSC----EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSHH
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCC----CceecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcHH
Confidence            479999999999999999998532211    13689999999999999999863        7788886 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      |+++++||+++|+++||+||.++.+++.+++++++++++|++........... .....+..+.................
T Consensus        85 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (541)
T 1v25_A           85 HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPEGYLAYEEA  163 (541)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCTTCEEHHHH
T ss_pred             HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCCcccccHHHH
Confidence            99999999999999999999999999999999999999999765432111110 00000100000000000000000000


Q ss_pred             --cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH--HhhcCCCCCCccceeecchhhhhhHHHHHHhhH
Q psy8308         183 --LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ--WATFPYSPSERVGAFKTALTFVDAVSEIWGPLL  258 (311)
Q Consensus       183 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
                        .........++++++|+|||||||.||||++||+++.......  ...+.+.+.++...   ..+++|..+.. ..+.
T Consensus       164 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~---~~p~~h~~~~~-~~~~  239 (541)
T 1v25_A          164 LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP---VVPMFHVNAWC-LPYA  239 (541)
T ss_dssp             CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE---CSCTTSHHHHT-HHHH
T ss_pred             hhccCCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEE---eccchhhhHHH-HHHH
Confidence              0000122457899999999999999999999999987665442  23345666666433   33334333321 1222


Q ss_pred             hhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       259 ~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ....|++++++.. .++|..+++.|+++++|+++++|+++..|+++.+..+
T Consensus       240 ~l~~G~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (541)
T 1v25_A          240 ATLVGAKQVLPGP-RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG  289 (541)
T ss_dssp             HHHHTCEEEECTT-CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred             HHhcCceEEeeCC-CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC
Confidence            2334777777653 2589999999999999999999999999998876543

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.3e-37  Score=293.92  Aligned_cols=267  Identities=22%  Similarity=0.227  Sum_probs=191.5

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      ..+..++.++|+++|+++||++|+.+.+.+.    .+++||+||.++++++|++|++.        |+++||+ |+++++
T Consensus         7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~--------gv~~gd~-V~i~~~   73 (590)
T 3kxw_A            7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKEL----EETMTYEQLDQHAKAIAATLQAE--------GAKPGDR-VLLLFA   73 (590)
T ss_dssp             HHTCSSHHHHHHHHHHHCTTSEEEEEEETTE----EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred             hcCcccHHHHHHHHHHhCCCCeEEEEEcCCe----eEEEcHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcC
Confidence            4556799999999999999999998754211    13689999999999999999864        7788886 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCC---cHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTA---PEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHN  175 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~---~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (311)
                      |+++|++++|||+++|+++||+||.+   ..+++.++++++++++++++....................+......    
T Consensus        74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (590)
T 3kxw_A           74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALE----  149 (590)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGG----
T ss_pred             CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeech----
Confidence            99999999999999999999999988   56899999999999999996543321111100000000000000000    


Q ss_pred             CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHH
Q psy8308         176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWG  255 (311)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                      ................++|+++|+|||||||.||||++||+++...+......+.+.+.++...   ..+++|..+....
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~h~~g~~~~  226 (590)
T 3kxw_A          150 SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFS---WLPPHHDMGLIGC  226 (590)
T ss_dssp             GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEE---CSCTTSHHHHHTT
T ss_pred             hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEE---ecCCCcchhhHHH
Confidence            0000000011122346789999999999999999999999999988887777788888776533   3444444332221


Q ss_pred             hhHhhcCCcEEEeCCCCCC--ChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         256 PLLSARCGGVLIIPRDVTR--NPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~--~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      .+.....|+++++...+.+  +|..+++.|+++++|++..+|+++..|++..
T Consensus       227 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  278 (590)
T 3kxw_A          227 ILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRI  278 (590)
T ss_dssp             THHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHC
T ss_pred             HHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHh
Confidence            2222334777777654322  7999999999999999999999999998864

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.2e-36  Score=289.77  Aligned_cols=265  Identities=18%  Similarity=0.247  Sum_probs=181.9

Q ss_pred             hhhhhHHHHHHHHHhhCCCceEEE---ecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEE
Q psy8308          20 YKEKQLHRIFEKNAALSPDNTALI---FEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVS   96 (311)
Q Consensus        20 ~~~~~l~~~~~~~a~~~pd~~Ai~---~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~   96 (311)
                      .+..++.+++.+.++++|+++|++   +...+      +++||+||+++++++|++|++.        |+++||+ |+++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~   81 (550)
T 3rix_A           17 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRY--------GLNTNHR-IVVC   81 (550)
T ss_dssp             CCCSCHHHHHHHHHHHHHTSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEE
T ss_pred             cccCCHHHHHHHHHHhCCCCceEEEeeecCCC------cEeEHHHHHHHHHHHHHHHHHh--------CCCCCCE-EEEE
Confidence            345689999999999999999865   22211      2689999999999999999865        6788886 9999


Q ss_pred             eCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhh-------
Q psy8308          97 LAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLS-------  169 (311)
Q Consensus        97 ~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  169 (311)
                      ++|+++|+++++||+++|+++||+||.++.+++.+++++++++++|++............ ....+..+....       
T Consensus        82 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  160 (550)
T 3rix_A           82 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDYQG  160 (550)
T ss_dssp             CSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCBTT
T ss_pred             cCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccccC
Confidence            999999999999999999999999999999999999999999999997654322111100 000000000000       


Q ss_pred             --------cccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh---cCCCCCCccc
Q psy8308         170 --------ASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT---FPYSPSERVG  238 (311)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~~  238 (311)
                              ..........  ..........++|+++|+|||||||.||||++||+++...+......   ..+.+.++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l  238 (550)
T 3rix_A          161 FQSMYTFVTSHLPPGFNE--YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAIL  238 (550)
T ss_dssp             BCBHHHHHHHHCCTTCCT--TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEE
T ss_pred             cccHHHHhhccccccccc--cccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEE
Confidence                    0000000000  00001111235789999999999999999999999998776554433   3455566543


Q ss_pred             eeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         239 AFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                         ...+++|..+. +..+.....|+++++...  +++..+++.|+++++|+++++|+++..|+++....
T Consensus       239 ---~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  302 (550)
T 3rix_A          239 ---SVVPFHHGFGM-FTTLGYLICGFRVVLMYR--FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID  302 (550)
T ss_dssp             ---ECSCTTSHHHH-HHHHHHHHHTCEEEECSS--CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG
T ss_pred             ---EechHHHHHHH-HHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc
Confidence               33444443332 222333445778887764  57999999999999999999999999999876543

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=2.5e-36  Score=289.10  Aligned_cols=263  Identities=16%  Similarity=0.193  Sum_probs=181.5

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ...++|+++|+++||++|+++.+....   .+++||+||.++++++|++|++.        |+++||+ |+++++|+++|
T Consensus        57 ~~~~~l~~~a~~~pd~~Al~~~~~~g~---~~~~Ty~eL~~~~~~~A~~L~~~--------Gv~~Gd~-V~l~~~~~~e~  124 (580)
T 3etc_A           57 FAYDVVDVYARDSPEKLAMIWCDDYGN---EKIFTFKDLKYYSDKAANFFVKH--------GIGKGDY-VMLTLKSRYDF  124 (580)
T ss_dssp             HHHHTHHHHHHHCTTCEEEEEEESSSC---EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECTTCTHH
T ss_pred             HHHHHHHHHHhhCCCCEEEEEEcCCCC---EeEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCCHHH
Confidence            345999999999999999997543221   23789999999999999999863        7888996 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhh-hhhhhc----c---cccccchh-----hhhhhc
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQAC-ENLAYK----G---RTVLSLPQ-----LRLLSA  170 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~-~~~~~~----~---~~~~~~~~-----~~~~~~  170 (311)
                      ++++|||+++|+++||++|.++.+++.+++++++++++|++.+... ......    .   .....+..     ......
T Consensus       125 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (580)
T 3etc_A          125 WYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRK  204 (580)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHH
T ss_pred             HHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHH
Confidence            9999999999999999999999999999999999999999765321 111000    0   00000000     000000


Q ss_pred             ccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhH
Q psy8308         171 SLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAV  250 (311)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      ...... ..... ........++|+++|+|||||||.||||+++|+++...+........+.+.++.... .+..+....
T Consensus       205 ~~~~~~-~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  281 (580)
T 3etc_A          205 ELEESS-PIFER-PTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTV-ADSGWGKCV  281 (580)
T ss_dssp             HHHHSC-SCCCC-CCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEEC-CCTTSTHHH
T ss_pred             HHhhCC-ccccc-CccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEe-CChHHHHHH
Confidence            000000 00000 000013467899999999999999999999999887766554444566666654332 222222111


Q ss_pred             -HHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         251 -SEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       251 -~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                       ..++.++.   .|+++++.....+++..+++.|+++++|+++++|+++++|++.
T Consensus       282 ~~~~~~~l~---~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  333 (580)
T 3etc_A          282 WGKLYGQWI---AGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE  333 (580)
T ss_dssp             HHTTHHHHH---TTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS
T ss_pred             HHHHHHHHh---CCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc
Confidence             12233333   3667766532346899999999999999999999999988864

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=9.8e-37  Score=287.90  Aligned_cols=252  Identities=23%  Similarity=0.315  Sum_probs=185.8

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.++|+++|+++||++|+.+.+.        ++||+||+++++++|++|++.       .+..+||+ |+++++|+++|
T Consensus         2 ~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~-------~~~~~g~~-V~i~~~n~~~~   65 (511)
T 3e7w_A            2 KLLHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKR-------ISGEKKSP-ILVYGHMEPHM   65 (511)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTT-------SCSSSCCC-EEEEESSCHHH
T ss_pred             cHHHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHh-------cCCCCCCe-EEEEecCCHHH
Confidence            578999999999999999997543        679999999999999999743       14456675 89999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCccc
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESML  183 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (311)
                      ++++||++++|+++||+|+.++.+++.+++++++++++|++.......... .........+.   ..   ....     
T Consensus        66 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~-~~~~~~~~~~~---~~---~~~~-----  133 (511)
T 3e7w_A           66 IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ-QIQTVSAEELL---EN---EGGS-----  133 (511)
T ss_dssp             HHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC-SSCEEEHHHHH---TS---CSCC-----
T ss_pred             HHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc-ccceecHhhhh---cc---ccCC-----
Confidence            999999999999999999999999999999999999999865432111100 00111111111   00   0000     


Q ss_pred             CCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCC
Q psy8308         184 HSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCG  263 (311)
Q Consensus       184 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  263 (311)
                      ........++|+++|+|||||||.||||++||+++..........+.+.+.++...+ .++.+..+...++   .....|
T Consensus       134 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~~~---~~l~~G  209 (511)
T 3e7w_A          134 VSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQ-APFSFDLSVMDLY---PCLQSG  209 (511)
T ss_dssp             CCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEEC-SCTTSTHHHHHHH---HHHHTT
T ss_pred             ccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEe-CCccHHHHHHHHH---HHHhcC
Confidence            001112457899999999999999999999999999888777777778777765332 2333333332233   333447


Q ss_pred             cEEEeCCCC-CCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         264 GVLIIPRDV-TRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       264 ~~~v~~~~~-~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      +++++.... .++|..+++.|+++++|++..+|+++.+|+++.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  254 (511)
T 3e7w_A          210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF  254 (511)
T ss_dssp             CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC
T ss_pred             CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence            777765431 25799999999999999999999999999876543

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=5.3e-37  Score=297.99  Aligned_cols=268  Identities=21%  Similarity=0.220  Sum_probs=184.3

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLL-HFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~-~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      ++.++++++++++||++|+++.+...  ...+++||+||.++++++|++|+ +        .|+++||+ |+|+++|++|
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~--~~~~~~TY~eL~~~v~~lA~~L~~~--------~Gv~~Gd~-V~i~~~~~~e  151 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEP--GQGYSITYKELLEEVCQVAQVLTYS--------MGVRKGDT-VAVYMPMVPE  151 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSST--TCCEEEEHHHHHHHHHHHHHHHHHT--------SCCCTTCE-EEECCCSSHH
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCC--CceEEEEHHHHHHHHHHHHHHHHHh--------cCCCCCCE-EEEEcCCCHH
Confidence            67899999999999999999753211  11237899999999999999997 5        37888996 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhcccccccchhhhhhhcccC-
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYKGRTVLSLPQLRLLSASLS-  173 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-  173 (311)
                      +++++|||+++|++++|+++.++.+++.+++++++++++|+++.....        ...........+..+..+..... 
T Consensus       152 ~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~  231 (663)
T 1ry2_A          152 AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP  231 (663)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCS
T ss_pred             HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCC
Confidence            999999999999999999999999999999999999999997653210        00000000000000000000000 


Q ss_pred             CCCC-CC----------CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceee
Q psy8308         174 HNNI-PG----------ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFK  241 (311)
Q Consensus       174 ~~~~-~~----------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (311)
                      .... ..          ...........+++|+++|+|||||||.||||++||++++..... ....+.+.+.+++... 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~-  310 (663)
T 1ry2_A          232 SVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA-  310 (663)
T ss_dssp             SCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC-
T ss_pred             ccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc-
Confidence            0000 00          000001112245789999999999999999999999998765533 3345677777765433 


Q ss_pred             cchhhhhhH-HHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         242 TALTFVDAV-SEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       242 ~~~~~~~~~-~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .++.+..+. ..++.++..   |+++++...  ..+++..+++.|++++||+++++|++++.|+++.+
T Consensus       311 ~~~~~~~g~~~~~~~~L~~---G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~  375 (663)
T 1ry2_A          311 GDIGWITGHTYVVYGPLLY---GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD  375 (663)
T ss_dssp             SCTTSHHHHHHTTHHHHHH---TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT
T ss_pred             CCcHHhhhhHHHHHHHHHh---CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc
Confidence            233333222 222344443   666666542  23589999999999999999999999999887543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-36  Score=285.81  Aligned_cols=256  Identities=16%  Similarity=0.170  Sum_probs=183.5

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      +|.++|+++++++||++|+.+.+.        ++||+||+++++++|++|++.           +||+ |+++++|+++|
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~-----------~gd~-V~i~~~n~~e~   61 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY-----------QQSR-VGLYIDNSIQS   61 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT-----------CCSE-EEEECCSSHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc-----------CCCE-EEEEcCCCHHH
Confidence            466789999999999999997542        679999999999999999731           5675 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhh---hhc------ccCC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRL---LSA------SLSH  174 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~  174 (311)
                      +++++||+++|+++||+|+.++++++.+++++++++++|++............  ...+.....   ...      ....
T Consensus        62 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  139 (501)
T 3ipl_A           62 IILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLLDNTMGIQY  139 (501)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC----------------------
T ss_pred             HHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccccccccccc
Confidence            99999999999999999999999999999999999999997654321110000  000000000   000      0000


Q ss_pred             ----CCC-CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhh
Q psy8308         175 ----NNI-PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDA  249 (311)
Q Consensus       175 ----~~~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                          ... .............+++|+++|+|||||||.||||++||+++..........+.+.+.++.... .++.+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~g  218 (501)
T 3ipl_A          140 DTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSV-LPIYHISG  218 (501)
T ss_dssp             ----------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEEC-SCTTSHHH
T ss_pred             ccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEe-CcHHHHHH
Confidence                000 000000001123467899999999999999999999999999887777777788877765433 23333333


Q ss_pred             HHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         250 VSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       250 ~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      +..++.+   ...|+++++...  ++++.+++.|+++++|++.++|+++..|+++...
T Consensus       219 ~~~~~~~---l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  271 (501)
T 3ipl_A          219 LSVLLRA---VIEGFTVRIVDK--FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH  271 (501)
T ss_dssp             HHHHHHH---HHHTCEEEECSS--CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC
T ss_pred             HHHHHHH---HHcCceEEeCCC--CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC
Confidence            3333333   334777877764  5899999999999999999999999999987653

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3e-36  Score=287.71  Aligned_cols=250  Identities=26%  Similarity=0.394  Sum_probs=180.1

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|.++++++||++|+.+.+.        ++||+||.++++++|++|++.        |+++||+ |+++++|++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~  100 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEK--------GIGKDTL-VGIMMEKSI  100 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCH
Confidence            45899999999999999999987542        679999999999999999863        6788886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCCC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPGE  180 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (311)
                      +|+++++|++++|+++||+||.++.+++.+++++++++++|++........... ...+..+      ..    ......
T Consensus       101 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~  170 (563)
T 1amu_A          101 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIF------EE----DTIKIR  170 (563)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEEC------CC----STTTTS
T ss_pred             HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeee------cc----hhhccc
Confidence            999999999999999999999999999999999999999999764322111000 0000000      00    000000


Q ss_pred             cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308         181 SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA  260 (311)
Q Consensus       181 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
                      . .........++|+++|+|||||||.||||++||+++..........+.+.+.++...+ .++.|..+...   .+..+
T Consensus       171 ~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~---~~~~l  245 (563)
T 1amu_A          171 E-GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQF-ASISFDASVWE---MFMAL  245 (563)
T ss_dssp             C-CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEEC-SCTTSTHHHHH---HHHHH
T ss_pred             c-CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEe-CCccHHHHHHH---HHHHH
Confidence            0 0011122457899999999999999999999999998777666666777777765433 33333333222   33344


Q ss_pred             cCCcEEEeCCCC-CCChhHHHHHHhhcCceEEEeChHHHHHHHH
Q psy8308         261 RCGGVLIIPRDV-TRNPDQLIGTLEKYKVERLVLVPSLLRSMLM  303 (311)
Q Consensus       261 ~~g~~~v~~~~~-~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~  303 (311)
                      ..|+++++.... .+++..+++.|+++++|++.++|+++..|..
T Consensus       246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  289 (563)
T 1amu_A          246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP  289 (563)
T ss_dssp             TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT
T ss_pred             HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh
Confidence            457777776532 2579999999999999999999999877643

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.3e-36  Score=293.11  Aligned_cols=269  Identities=21%  Similarity=0.242  Sum_probs=184.8

Q ss_pred             hHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhH
Q psy8308          24 QLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGL  103 (311)
Q Consensus        24 ~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~  103 (311)
                      ++.++|+++++++||++|+++.+.+..  ..+++||+||.++++++|++|++.        |+++||+ |+|+++|++++
T Consensus        77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~--------Gv~~Gd~-V~i~~~~~~e~  145 (652)
T 1pg4_A           77 LAANCLDRHLQENGDRTAIIWEGDDTS--QSKHISYRELHRDVCRFANTLLDL--------GIKKGDV-VAIYMPMVPEA  145 (652)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEECSSTT--CEEEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEECCSSHHH
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCC--ceeEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHHH
Confidence            578899999999999999997532111  123789999999999999999865        6788896 99999999999


Q ss_pred             HHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhh--------hhhhc--ccccccchhhhhhhcccC
Q psy8308         104 IQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACE--------NLAYK--GRTVLSLPQLRLLSASLS  173 (311)
Q Consensus       104 ~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~  173 (311)
                      ++++|||+++|+++||+++.++++++.+++++++++++|+++.....        .....  ......+..+..+.....
T Consensus       146 vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~  225 (652)
T 1pg4_A          146 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS  225 (652)
T ss_dssp             HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred             HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC
Confidence            99999999999999999999999999999999999999997653210        00000  000000000000000000


Q ss_pred             CCCC-C----------CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceee
Q psy8308         174 HNNI-P----------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFK  241 (311)
Q Consensus       174 ~~~~-~----------~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (311)
                      .... .          .............++|+++|+|||||||.||||++||++++..... ....+.+.+.+++..+ 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~-  304 (652)
T 1pg4_A          226 DIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT-  304 (652)
T ss_dssp             CCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC-
T ss_pred             cccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc-
Confidence            0000 0          0000001112235789999999999999999999999998765533 3345677777765432 


Q ss_pred             cchhhhhhHHHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         242 TALTFVDAVSEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .++.|.  .+..+..+..+..|+++++...  ..++|..+++.|++++||+++++|++++.|+++.+
T Consensus       305 ~~~~~~--~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  369 (652)
T 1pg4_A          305 ADVGWV--TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD  369 (652)
T ss_dssp             SCTTSH--HHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred             cCCeee--echHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc
Confidence            233333  2222222233334777777543  23589999999999999999999999999998654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=8.1e-36  Score=282.24  Aligned_cols=251  Identities=24%  Similarity=0.325  Sum_probs=180.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|+++++++||++|+.+.+.        ++||+||+++++++|++|++.        |+++||+ |+++++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------g~~~gd~-V~i~~~n~~~   66 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSL--------ALLAKSP-VLVFGAQTYD   66 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------CCCTTCC-EEEEECSSHH
T ss_pred             HHHHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCCHH
Confidence            4688999999999999999987653        579999999999999999864        7788897 8999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCCcc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESM  182 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (311)
                      |+++++||+++|+++||+|+.++++++.+++++++++++|++.+.....   .......+..+......    ..+.   
T Consensus        67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~---  136 (521)
T 3l8c_A           67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---EGISLVSLSEIESAKLA----EMPY---  136 (521)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---TTSEEEEHHHHHHHHHH----TCCC---
T ss_pred             HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc---ccCcccchhhhhhcccc----cCCc---
Confidence            9999999999999999999999999999999999999999976532111   01111111111110000    0000   


Q ss_pred             cCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh--cCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308         183 LHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT--FPYSPSERVGAFKTALTFVDAVSEIWGPLLSA  260 (311)
Q Consensus       183 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
                        .......++|+++|+|||||||.||||++||+++..........  +...+.++... ..++.+..+...++..+   
T Consensus       137 --~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~l---  210 (521)
T 3l8c_A          137 --ERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLA-QPPYSFDLSVMYWAPTL---  210 (521)
T ss_dssp             --CCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEEC-CSCTTSGGGHHHHHHHH---
T ss_pred             --ccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEe-cCCccHHHHHHHHHHHH---
Confidence              11122457899999999999999999999999998766555443  44555554322 22333333322223233   


Q ss_pred             cCCcEEEeCCC-CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         261 RCGGVLIIPRD-VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       261 ~~g~~~v~~~~-~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..|+++++.+. ...++..+++.|+++++|++..+|+++..++...+
T Consensus       211 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  257 (521)
T 3l8c_A          211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD  257 (521)
T ss_dssp             HTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT
T ss_pred             hcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc
Confidence            34666666543 23479999999999999999999999998887654

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=8.4e-36  Score=283.80  Aligned_cols=262  Identities=19%  Similarity=0.258  Sum_probs=183.3

Q ss_pred             hhHHH-HHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          23 KQLHR-IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        23 ~~l~~-~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      .++.+ ++.+.++++ |++|+++...+      +++||+||.++++++|++|++.        |+++||+ |+++++|++
T Consensus        25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~   88 (548)
T 2d1s_A           25 AGTQLRKYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNY--------GLVVDGR-IALCSENCE   88 (548)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEECSSCT
T ss_pred             CcHHHHHHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEeCCch
Confidence            57888 888888888 99999874221      2679999999999999999864        6778886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-----ccccccchhh------hhhhc
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-----GRTVLSLPQL------RLLSA  170 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~  170 (311)
                      +|+++++||+++|+++||+||.++.+++.+++++++++++|++...........     ...+..++..      .....
T Consensus        89 e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (548)
T 2d1s_A           89 EFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDT  168 (548)
T ss_dssp             TTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHH
T ss_pred             hHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHH
Confidence            999999999999999999999999999999999999999999765432211100     0111101000      00000


Q ss_pred             ccCCCCCCCCcccCCCCCCC-CCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh---cCCCCCCccceeecchhh
Q psy8308         171 SLSHNNIPGESMLHSDNNNE-QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT---FPYSPSERVGAFKTALTF  246 (311)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~-~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  246 (311)
                      .................... .++|+++|+|||||||.||||++||+++..........   +.+.+.++..   ...++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~  245 (548)
T 2d1s_A          169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVL---TVVPF  245 (548)
T ss_dssp             HHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEE---ECSCT
T ss_pred             HHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEE---EeccH
Confidence            00000000000000000001 23899999999999999999999999998776655444   4556666543   33444


Q ss_pred             hhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         247 VDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      +|..+.....+... .|+++++...  ++++.+++.|+++++|+++++|+++..|+++.+
T Consensus       246 ~h~~g~~~~~~~~l-~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  302 (548)
T 2d1s_A          246 HHGFGMFTTLGYLI-CGFRVVMLTK--FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL  302 (548)
T ss_dssp             TSHHHHHHHHHHHH-TTCEEEECCC--CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHh-cCcEEEEcCC--CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc
Confidence            44444322222223 5778887764  589999999999999999999999999988654

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.9e-36  Score=289.90  Aligned_cols=263  Identities=21%  Similarity=0.262  Sum_probs=189.7

Q ss_pred             hhhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308          18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL   97 (311)
Q Consensus        18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~   97 (311)
                      ..|++.++.++|+++++  ||++|+++.+.        ++||+||+++++++|+.|++.        |+++||+ |++++
T Consensus        22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~gd~-V~l~~   82 (617)
T 3rg2_A           22 GYWQDLPLTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQ--------GIKPGET-ALVQL   82 (617)
T ss_dssp             TSCCCCCTTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEEC
T ss_pred             CCCCcCCHHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEC
Confidence            46677899999999988  99999997653        679999999999999999863        7788886 99999


Q ss_pred             CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhh----hhhcccccccchhhhhhhcccC
Q psy8308          98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACEN----LAYKGRTVLSLPQLRLLSASLS  173 (311)
Q Consensus        98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  173 (311)
                      +|+++|++++|||+++|+++||++|.++.+++.++++++++++++++.......    ......................
T Consensus        83 ~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (617)
T 3rg2_A           83 GNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE  162 (617)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST
T ss_pred             CCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc
Confidence            999999999999999999999999999999999999999999999976432100    0000000000000000000000


Q ss_pred             C--CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308         174 H--NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       174 ~--~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
                      .  .................++++++|+|||||||.||||+++|+++...+......+.+.+.++...+   .++.|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~---~p~~~~~~  239 (617)
T 3rg2_A          163 HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCA---IPAAHNYA  239 (617)
T ss_dssp             TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEEC---SCTTSHHH
T ss_pred             cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEe---ccchhhhh
Confidence            0  000000000011123457899999999999999999999999999888777777788887775433   33333322


Q ss_pred             ----HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         252 ----EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       252 ----~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                          .++.++.   .|+++++..+  +++..+++.|+++++|++.++|+++..|+++...
T Consensus       240 ~~~~~~~~~l~---~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  294 (617)
T 3rg2_A          240 MSSPGSLGVFL---AGGTVVLAAD--PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIE  294 (617)
T ss_dssp             HHSSHHHHHHH---HTCEEEECSS--CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHH---cCCEEEEeCC--CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhc
Confidence                2343444   3677777654  4799999999999999999999999999987654

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=3.4e-36  Score=285.36  Aligned_cols=256  Identities=18%  Similarity=0.196  Sum_probs=176.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++++++++ +||++|+.+.+.        ++||+||+++++++|++|++.        |+++||+ |+++++|+++
T Consensus        24 ~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~n~~~   85 (529)
T 2v7b_A           24 NFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTL--------GVHPEER-ILLVMLDTVA   85 (529)
T ss_dssp             CHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSTH
T ss_pred             eHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEEcCCcHH
Confidence            358899999999 999999987532        679999999999999999853        7788886 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc------cccccchhhh-------hhh
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG------RTVLSLPQLR-------LLS  169 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~-------~~~  169 (311)
                      |++++|||+++|+++||+|+.++.+++.+++++++++++|++............      ..+...+...       ...
T Consensus        86 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (529)
T 2v7b_A           86 LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFE  165 (529)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHH
T ss_pred             HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchh
Confidence            999999999999999999999999999999999999999997654321111100      1110000000       000


Q ss_pred             cccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhH-HHHHHHHHhhcCCCCCCccceeecchhhhh
Q psy8308         170 ASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVI-LNRLAWQWATFPYSPSERVGAFKTALTFVD  248 (311)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
                      .......      .........++|+++|+|||||||.||||++||+++ ..........+.+.+.++..   ...++.|
T Consensus       166 ~~~~~~~------~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~---~~~p~~~  236 (529)
T 2v7b_A          166 ELIDAAA------PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVF---SAAKLFF  236 (529)
T ss_dssp             HHHHTSC------CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEE---ESSCTTS
T ss_pred             hhhccCC------CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEE---EeecHHH
Confidence            0000000      001112346789999999999999999999999998 44433333334566666543   3344444


Q ss_pred             hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ..+.....+.....|+++++... .+++..+++.|+++++|++..+|+++..|++..+
T Consensus       237 ~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  293 (529)
T 2v7b_A          237 AYGLGNGLTFPLSVGATAILMAE-RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN  293 (529)
T ss_dssp             HHHHHHHTHHHHHHTCEEECCCS-CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc
Confidence            44332222333334777776532 3589999999999999999999999999987543

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2e-36  Score=285.25  Aligned_cols=251  Identities=22%  Similarity=0.305  Sum_probs=178.5

Q ss_pred             HHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHHH
Q psy8308          27 RIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQV  106 (311)
Q Consensus        27 ~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~~  106 (311)
                      ++|.+.++++|+++|+.....+.     +++||+||+++++++|++|++.        |+++||+ |+++++|+++|+++
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~-----~~~Ty~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~~~~~~~~~   69 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAG-----DKISYAELVARAGRVANVLVAR--------GLQVGDR-VAAQTEKSVEALVL   69 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTC-----CEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSCHHHHHH
T ss_pred             hHHHHHHHhCCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEECCCCHHHHHH
Confidence            46788999999999987532221     2679999999999999999863        7788886 99999999999999


Q ss_pred             HHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhh--hhhhcccCCCCCCCCc
Q psy8308         107 LLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQL--RLLSASLSHNNIPGES  181 (311)
Q Consensus       107 ~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~  181 (311)
                      ++||+++|+++||+||.++.+++.+++++++++++|++...........   ...+..+...  ......... .  .  
T Consensus        70 ~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--  144 (503)
T 4fuq_A           70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAG-A--S--  144 (503)
T ss_dssp             HHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHT-S--C--
T ss_pred             HHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhc-C--C--
Confidence            9999999999999999999999999999999999999765322111100   0001000000  000000000 0  0  


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHH---HHHhhH
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE---IWGPLL  258 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  258 (311)
                       .........++|+++|+|||||||.||||++||+++..........+.+.+.++....   ++++|..+.   .+..++
T Consensus       145 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~---~p~~~~~g~~~~~~~~l~  220 (503)
T 4fuq_A          145 -EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHA---LPIYHTHGLFVASNVTLF  220 (503)
T ss_dssp             -SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC---SCSSSHCCCCCCHHHHHH
T ss_pred             -CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEe---CChHHHHHHHHHHHHHHH
Confidence             0011123457899999999999999999999999999888777777788887765332   333333221   222333


Q ss_pred             hhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       259 ~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                         .|+.+++.+.  ++|+.+++.|+  ++|+++.+|+++..|+++.+.
T Consensus       221 ---~g~~~~~~~~--~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~  262 (503)
T 4fuq_A          221 ---ARGSMIFLPK--FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL  262 (503)
T ss_dssp             ---TTCEEEECSS--CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC
T ss_pred             ---hCCEEEEcCC--CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc
Confidence               3666666653  58999999998  899999999999999987654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.3e-35  Score=299.88  Aligned_cols=268  Identities=18%  Similarity=0.225  Sum_probs=189.9

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      ..++.++|.++++++||++|+++...+      +++||+||+++++++|++|++.        |+++||+ |+++++|++
T Consensus        60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~--------Gv~~gd~-V~i~~~ns~  124 (979)
T 3tsy_A           60 HLSLHDYIFQNISEFATKPCLINGPTG------HVYTYSDVHVISRQIAANFHKL--------GVNQNDV-VMLLLPNCP  124 (979)
T ss_dssp             TSCHHHHHTTTGGGTTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECSSCH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECCCC------cEEEHHHHHHHHHHHHHHHHHc--------CCCCcCE-EEEEeCCCH
Confidence            468999999999999999999975422      2679999999999999999864        7788886 999999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc---ccccccchhhhhh---hcccCCC
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK---GRTVLSLPQLRLL---SASLSHN  175 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~  175 (311)
                      +|++++|||+++|+++||+||.++++++.+++++++++++|++...........   ...+..++.....   .......
T Consensus       125 e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (979)
T 3tsy_A          125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT  204 (979)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGG
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHH
Confidence            999999999999999999999999999999999999999999765432211110   0001000000000   0000000


Q ss_pred             CC---CCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHh----hcCCCCCCccceeecchhhhh
Q psy8308         176 NI---PGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA----TFPYSPSERVGAFKTALTFVD  248 (311)
Q Consensus       176 ~~---~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  248 (311)
                      ..   ..............++|+++|+|||||||.||||++||+++...+.....    .+.+.+.++..   ..++++|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l---~~~p~~h  281 (979)
T 3tsy_A          205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL---CVLPMFH  281 (979)
T ss_dssp             GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEE---ECSCSSS
T ss_pred             HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEE---EECchHH
Confidence            00   00000011122356899999999999999999999999999877655433    23455566543   3344444


Q ss_pred             hHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         249 AVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       249 ~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ..+.....+.....|+++++.+.  +++..+++.|+++++|++.++|+++..|+++.+...
T Consensus       282 ~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  340 (979)
T 3tsy_A          282 IYALNSIMLCGLRVGAAILIMPK--FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK  340 (979)
T ss_dssp             HHHHHHTHHHHHHHTCEEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGT
T ss_pred             HHHHHHHHHHHHhcCcEEEEeCC--CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccC
Confidence            43332222333344777777764  479999999999999999999999999998776543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2e-35  Score=282.34  Aligned_cols=266  Identities=18%  Similarity=0.152  Sum_probs=179.6

Q ss_pred             hhHHHHHHHHHhh-----CCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEe
Q psy8308          23 KQLHRIFEKNAAL-----SPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSL   97 (311)
Q Consensus        23 ~~l~~~~~~~a~~-----~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~   97 (311)
                      ..+.++++++++.     +||++|+.+.+....   .+++||+||+++++++|++|++.       .|+++||+ |++++
T Consensus        38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~---~~~~Ty~el~~~~~~lA~~L~~~-------~Gv~~gd~-V~i~~  106 (570)
T 3c5e_A           38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGK---ELMWNFRELSENSQQAANVLSGA-------CGLQRGDR-VAVVL  106 (570)
T ss_dssp             CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSC---EEEEEHHHHHHHHHHHHHHHHTT-------TCCCTTCE-EEEEC
T ss_pred             cHHHHHHHHHHhhccccCCCCceEEEEEcCCCc---eeEEeHHHHHHHHHHHHHHHHHc-------cCCCCCCE-EEEEc
Confidence            3567899999998     999999987432110   13689999999999999999742       16788886 99999


Q ss_pred             CCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCC--
Q psy8308          98 APSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHN--  175 (311)
Q Consensus        98 ~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  175 (311)
                      +|+++|++++|||+++|+++||+||.++.+++.+++++++++++|++........... .....+..+..........  
T Consensus       107 ~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  185 (570)
T 3c5e_A          107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSCDGWL  185 (570)
T ss_dssp             CSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCCTTSE
T ss_pred             CCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCccccc
Confidence            9999999999999999999999999999999999999999999999765432211100 0000000000000000000  


Q ss_pred             ---CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHH-HHHHHHhhcCCCCCCccceeecchhhhhhHH
Q psy8308         176 ---NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILN-RLAWQWATFPYSPSERVGAFKTALTFVDAVS  251 (311)
Q Consensus       176 ---~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
                         ................++|+++|+|||||||.||||++||+.+.. ..... ..+.+.+.++...   ..++.|..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~---~~p~~~~~~  261 (570)
T 3c5e_A          186 NFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWT---ISDTGWILN  261 (570)
T ss_dssp             EHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEE---CCCTTSHHH
T ss_pred             cHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEE---cCchHHHHH
Confidence               000000000011224578999999999999999999999994332 33233 4456666666433   233333333


Q ss_pred             HHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         252 EIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       252 ~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      .....+.....|+++++.....++|..+++.|+++++|+++.+|+++.+|+++
T Consensus       262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  314 (570)
T 3c5e_A          262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ  314 (570)
T ss_dssp             HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc
Confidence            22222222334666666543346899999999999999999999999999875

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.3e-34  Score=299.86  Aligned_cols=249  Identities=24%  Similarity=0.337  Sum_probs=185.3

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      .++.++|.++++++||++|+.+.+.        ++||+||+++++++|+.|++.        |+++||+ |+|+++|+++
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~--------Gv~~g~~-V~i~~~~s~~  526 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKH--------GAGKGSV-VALYTKRSLE  526 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECCCSSHH
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhc--------CcCCcCE-EEEEeCCCHH
Confidence            5799999999999999999997543        679999999999999999863        7778885 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc-ccccccchhhhhhhcccCCCCCCCCc
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK-GRTVLSLPQLRLLSASLSHNNIPGES  181 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (311)
                      +++++||++|+|+++||++|.++.+++.++++++++++++++........... ......++....    ..  ..    
T Consensus       527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~----  596 (1304)
T 2vsq_A          527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTR----FE--EQ----  596 (1304)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGG----GG--SC----
T ss_pred             HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccc----cc--cc----
Confidence            99999999999999999999999999999999999999999765322110000 000000000000    00  00    


Q ss_pred             ccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhc
Q psy8308         182 MLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSAR  261 (311)
Q Consensus       182 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
                       .........++++++|+|||||||.||||+++|+++.+. ......+.+.+.++... ..+..|..+...++.++.   
T Consensus       597 -~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~-~~~~~fd~~~~~~~~~l~---  670 (1304)
T 2vsq_A          597 -ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLS-VSNYAFDAFTFDFYASML---  670 (1304)
T ss_dssp             -SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEE-CSCTTSTHHHHHHHHHHT---
T ss_pred             -cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEE-ECCccHHHHHHHHHHHHH---
Confidence             001112346789999999999999999999999998754 33334456666776543 344555544444454444   


Q ss_pred             CCcEEEeCC-CCCCChhHHHHHHhhcCceEEEeChHHHHHHHHH
Q psy8308         262 CGGVLIIPR-DVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMF  304 (311)
Q Consensus       262 ~g~~~v~~~-~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~  304 (311)
                      .|+++++.. ....+|..+++.|++++||++.++|+++..|++.
T Consensus       671 ~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~  714 (1304)
T 2vsq_A          671 NAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA  714 (1304)
T ss_dssp             TTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred             cCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence            466666654 3346899999999999999999999999998764

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.6e-34  Score=275.86  Aligned_cols=264  Identities=23%  Similarity=0.258  Sum_probs=174.1

Q ss_pred             hhhhhhhHHHHHHHHHhhCCCceEEEecccC--ccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEE
Q psy8308          18 KIYKEKQLHRIFEKNAALSPDNTALIFEEQD--KDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAV   95 (311)
Q Consensus        18 ~~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~--~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai   95 (311)
                      ..++..++.++|+++|+++||++|+++.+..  ......+++||+||+++++++|++|.+.        |+ +||+ |++
T Consensus        15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--------g~-~gd~-V~i   84 (562)
T 3ite_A           15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHA--------SL-HGRA-IAV   84 (562)
T ss_dssp             ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHT--------TC-SSCE-EEE
T ss_pred             eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhc--------CC-CCCE-EEE
Confidence            3455678999999999999999999875421  0001124789999999999999999753        44 6786 999


Q ss_pred             EeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCC
Q psy8308          96 SLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHN  175 (311)
Q Consensus        96 ~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (311)
                      +++|+++|++++|||+++|+++||+||.++.+++.+++++++++++|+++........................ .....
T Consensus        85 ~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  163 (562)
T 3ite_A           85 SLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIE-NLSTQ  163 (562)
T ss_dssp             ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHH-HHHHS
T ss_pred             EeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhh-hcccc
Confidence            99999999999999999999999999999999999999999999999975432211000000011000000000 00000


Q ss_pred             CCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh--------cCCCCCCccceeecchhhh
Q psy8308         176 NIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT--------FPYSPSERVGAFKTALTFV  247 (311)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  247 (311)
                      ..      ........++++++|+|||||||.||||++||+++..........        ..+...++... ..+..+.
T Consensus       164 ~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  236 (562)
T 3ite_A          164 DT------SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC-LASRAFD  236 (562)
T ss_dssp             CC------SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC-CSCTTST
T ss_pred             cc------cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE-ecCchhh
Confidence            00      001112346789999999999999999999999998765443221        23444444322 2233333


Q ss_pred             hhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHH
Q psy8308         248 DAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLM  303 (311)
Q Consensus       248 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~  303 (311)
                      .+...++..+.   .|+.+++...+ ..+..+++.|+++++|++.++|+++..+..
T Consensus       237 ~~~~~~~~~l~---~g~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~  288 (562)
T 3ite_A          237 VHIGEMFLAWR---FGLCAVTGERL-SMLDDLPRTFRELGVTHAGIVPSLLDQTGL  288 (562)
T ss_dssp             HHHHHHHHHHH---TTCEEEECCHH-HHHHSHHHHHHHTTCCEEEECHHHHHHHTC
T ss_pred             hhHHHHHHHHh---cccEEEecchh-hCHHHHHHHHHHcCCCEEEcCHHHHhhccc
Confidence            33333333333   46677776533 135778999999999999999999876643

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=7.5e-35  Score=274.64  Aligned_cols=240  Identities=23%  Similarity=0.312  Sum_probs=174.5

Q ss_pred             hhhHHHHHHHHHhhCCC-ceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCC
Q psy8308          22 EKQLHRIFEKNAALSPD-NTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPS  100 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd-~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~  100 (311)
                      ..++.+++.++++++|+ ++|+.+.+.        ++||+||+++++++|++|.             .||+ |+++++|+
T Consensus        21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-------------~~~~-V~i~~~~~   78 (505)
T 3nyq_A           21 MSSLFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-------------GAGR-VAVWATPA   78 (505)
T ss_dssp             ---CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC----------------C-EEEECCSS
T ss_pred             cchhHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-------------CCCE-EEEEcCCC
Confidence            45677788888888887 999998653        6799999999999998763             2565 99999999


Q ss_pred             hhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCCCC
Q psy8308         101 SGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGE  180 (311)
Q Consensus       101 ~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (311)
                      ++|+++++|++++|+++||+||.++.+++.+++++++++++|++........      ...++.+. .  .  .... . 
T Consensus        79 ~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~------~~~~~~~~-~--~--~~~~-~-  145 (505)
T 3nyq_A           79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA------LGALERVD-V--D--VRAR-G-  145 (505)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGG------GTTSEEEE-C--C--TTCC-C-
T ss_pred             HHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchh------hccccccc-c--c--cccc-c-
Confidence            9999999999999999999999999999999999999999999754211100      00010000 0  0  0000 0 


Q ss_pred             cccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhh
Q psy8308         181 SMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSA  260 (311)
Q Consensus       181 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
                         .......+++|+++|+|||||||.||||++||+++..........+.+.+.++...   .++++|..+..+..+...
T Consensus       146 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~---~~p~~~~~g~~~~~~~~l  219 (505)
T 3nyq_A          146 ---AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQ---GLPLFHVHGLVLGILGPL  219 (505)
T ss_dssp             ---CCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEE---CCCTTSHHHHTTTTHHHH
T ss_pred             ---CCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEE---eccHHHHHHHHHHHHHHH
Confidence               01112346789999999999999999999999999988877777778887776433   233333333222222233


Q ss_pred             cCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHH
Q psy8308         261 RCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFL  305 (311)
Q Consensus       261 ~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~  305 (311)
                      ..|+++++...  +++..+++.+ ++++|+++.+|+++..|++..
T Consensus       220 ~~G~~~~~~~~--~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~  261 (505)
T 3nyq_A          220 RRGGSVRHLGR--FSTEGAAREL-NDGATMLFGVPTMYHRIAETL  261 (505)
T ss_dssp             HHTCEEEECSS--CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHG
T ss_pred             hcCCEEEECCC--CChHHHHHHH-hhCCeEEEehHHHHHHHHHhh
Confidence            34777777654  5799999999 899999999999999998854

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.69  E-value=1.7e-17  Score=149.37  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             CCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCC
Q psy8308         192 SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRD  271 (311)
Q Consensus       192 ~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  271 (311)
                      .+|+++|+|||||||.||||++||+++.+++......+.+.+.++.... .++.|..++..++..+.   .|+.+++...
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~-~pl~h~~gl~~~~~~l~---~g~~~~~~~~  111 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVC-LNVGYIAGLMMLVRGME---LDWELTVTEP  111 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC-SCTTSHHHHHHHHHHHH---HTCEEEEECC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEE-CChHHHHHHHHHHHHHH---hCcEEEecCc
Confidence            4689999999999999999999999999888877778888888875433 23333333333333333   3556665542


Q ss_pred             CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         272 VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       272 ~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .    ...++.|+++++|++.++|+++.+|+++..
T Consensus       112 ~----~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~  142 (358)
T 4gs5_A          112 T----ANPLAGLDHADFDFVAMVPMQLQSILENSA  142 (358)
T ss_dssp             C----SCTTTTCSSCCCSEEEECHHHHHHHHHCTT
T ss_pred             c----ccHHHHHHHhCCeEEEcChHHHHHhhcccc
Confidence            1    234678999999999999999999998654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.62  E-value=1.8e-15  Score=139.67  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             CC-CCeEEEEEccCCCCCCcceEecchhHHHHHHHH---HhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEE
Q psy8308         191 QS-NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL  266 (311)
Q Consensus       191 ~~-~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  266 (311)
                      .+ +++++++|||||||.||||++||+++.......   .....+.+.++.....+...+.......+..+   ..|+++
T Consensus        83 ~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l---~~G~~~  159 (436)
T 3qov_A           83 DMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAE---RLGCLT  159 (436)
T ss_dssp             CHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHH---HHTCEE
T ss_pred             CCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHH---HcCCEE
Confidence            35 789999999999999999999999987655433   23446777776544322222222222223333   347777


Q ss_pred             EeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhCC
Q psy8308         267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGT  310 (311)
Q Consensus       267 v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~~  310 (311)
                      ++...  .+++.+++.|+++++|+++++|+++..|+++.+..+.
T Consensus       160 ~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  201 (436)
T 3qov_A          160 VPAAA--GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI  201 (436)
T ss_dssp             ECCCS--CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC
T ss_pred             EeCCC--CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC
Confidence            77653  3799999999999999999999999999998776553

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.61  E-value=3.9e-15  Score=137.38  Aligned_cols=115  Identities=16%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH---HhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEE
Q psy8308         190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL  266 (311)
Q Consensus       190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  266 (311)
                      ..++++++++|||||||.||||++||+++.......   ...+.+.+.++.....+...+.......+.+   ...|+++
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~G~~~  163 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGA---ERAGLTV  163 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHH---HHTTCEE
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHH---HHcCCEE
Confidence            346789999999999999999999999987654322   2345667777654332221222222222333   3357777


Q ss_pred             EeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       267 v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ++...  ++++.+++.|+++++|+++.+|+++..|+++.+..+
T Consensus       164 ~~~~~--~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~  204 (437)
T 2y27_A          164 IPFGG--GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG  204 (437)
T ss_dssp             ECCCS--CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT
T ss_pred             EeCCC--CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC
Confidence            76654  379999999999999999999999999998876544

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.60  E-value=4.5e-15  Score=137.18  Aligned_cols=115  Identities=13%  Similarity=0.150  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHH---HhhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEE
Q psy8308         190 EQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQ---WATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVL  266 (311)
Q Consensus       190 ~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  266 (311)
                      ..++++++++|||||||.||||++||+++.......   ...+++.+.++.....+...+.......+..+.   .|+++
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~---~G~~~  165 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAER---LGCMV  165 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHH---HTCEE
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHH---cCCEE
Confidence            356889999999999999999999999987654332   224567777765433222122222222333333   47777


Q ss_pred             EeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhC
Q psy8308         267 IIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG  309 (311)
Q Consensus       267 v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~  309 (311)
                      ++...  ++++.+++.|+++++|++..+|+++..|+++.+..+
T Consensus       166 ~~~~~--~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~  206 (443)
T 2y4o_A          166 VPMSG--GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG  206 (443)
T ss_dssp             ECCCS--CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT
T ss_pred             EECCC--CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC
Confidence            77654  379999999999999999999999999998876544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.54  E-value=1.3e-14  Score=130.84  Aligned_cols=110  Identities=25%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             CCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHH---hhcCCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEE
Q psy8308         191 QSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQW---ATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLI  267 (311)
Q Consensus       191 ~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  267 (311)
                      .++++++|+|||||||.||||+++|+++.....+..   ....+.+.++.....+...+..+....+..   ...|+ .+
T Consensus        89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~---~~~G~-~v  164 (369)
T 3hgu_A           89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERA---LRLGG-MF  164 (369)
T ss_dssp             CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHH---HHTTS-CE
T ss_pred             CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHH---HHcCC-EE
Confidence            578899999999999999999999999987765432   334556666653332221332222222222   33466 44


Q ss_pred             eCCCCCCChh-----------------------HHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         268 IPRDVTRNPD-----------------------QLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       268 ~~~~~~~~p~-----------------------~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ++..  ++|.                       .+++.|+++++|++..+|+++..|+++.+
T Consensus       165 ~~~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~  224 (369)
T 3hgu_A          165 FSID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE  224 (369)
T ss_dssp             ECCC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH
T ss_pred             ECcc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh
Confidence            4443  3677                       88889999999999999999999987643

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=86.52  E-value=7.5  Score=34.70  Aligned_cols=81  Identities=19%  Similarity=0.306  Sum_probs=58.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC--ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308          55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP--SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI  132 (311)
Q Consensus        55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n--~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~  132 (311)
                      ..+|.+.+...+..++..+...        +..++|+ +...++-  ....+...++++..|+.+++... .+++++...
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~~--------~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~  177 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRAA--------GARRGDK-VHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQL  177 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHH
T ss_pred             EecCHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence            3568888887777666655432        4566775 6666664  33445557888899999997765 488999999


Q ss_pred             HHHcCCcEEEecC
Q psy8308         133 LNEARPLLVIAEN  145 (311)
Q Consensus       133 l~~s~~~~vi~~~  145 (311)
                      ++..++.+++...
T Consensus       178 i~~~~~t~l~~~P  190 (437)
T 2y27_A          178 IQDFRPDIIMVTP  190 (437)
T ss_dssp             HHHHCCSEEEECH
T ss_pred             HHHhCCCEEEECH
Confidence            9999999988743

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=85.35  E-value=8.8  Score=34.29  Aligned_cols=81  Identities=12%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCC--ChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHH
Q psy8308          55 TNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAP--SSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHI  132 (311)
Q Consensus        55 ~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n--~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~  132 (311)
                      ..+|.+.+...+..++..+...        +..++|+ +...++-  ....+...++++..|+.+++.... .++++...
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~--------~~~~~d~-~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~  179 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAA--------GGRPGDT-LHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQL  179 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHH
T ss_pred             EecCHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHH
Confidence            3568888887777776655432        4566775 6666664  334455678888999999987664 88999999


Q ss_pred             HHHcCCcEEEecC
Q psy8308         133 LNEARPLLVIAEN  145 (311)
Q Consensus       133 l~~s~~~~vi~~~  145 (311)
                      ++..++.+++...
T Consensus       180 i~~~~~t~l~~~P  192 (443)
T 2y4o_A          180 IRDFEPKIILVTP  192 (443)
T ss_dssp             HHHHCCSEEEECH
T ss_pred             HHHhCCcEEEECH
Confidence            9999999988743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-38
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-33
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-27
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-26
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-24
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-23
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-22

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  140 bits (354), Expect = 4e-38
 Identities = 66/300 (22%), Positives = 116/300 (38%), Gaps = 40/300 (13%)

Query: 28  IFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQ 87
             +++   + D TA+I+E  D       + +Y EL+    + A  LL     K       
Sbjct: 77  CLDRHLQENGDRTAIIWEGDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKK------- 127

Query: 88  DGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQ 147
            GD  VA+ +         +LA  + GA +  +      + V   + ++   LVI  +E 
Sbjct: 128 -GDV-VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEG 185

Query: 148 A----------CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQ------ 191
                        + A K   V S+  + +L  + S  +      L   +  E+      
Sbjct: 186 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 245

Query: 192 -----SNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWA-TFPYSPSERVGAFKTALT 245
                + D   +LYTSGSTG PKGV       L   A  +   F Y P +        + 
Sbjct: 246 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT-ADVG 304

Query: 246 FVDAVS-EIWGPLLSARCGGVLIIPRDVTR--NPDQLIGTLEKYKVERLVLVPSLLRSML 302
           +V   S  ++GPL    CG   ++   V     P ++   ++K++V  L   P+ +R+++
Sbjct: 305 WVTGHSYLLYGPLA---CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 361

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  126 bits (318), Expect = 3e-33
 Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 32/298 (10%)

Query: 26  HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNE 85
           +   +++A  +P+  A+IFE  +       + TY EL     Q+A+ L + +  +     
Sbjct: 62  YNCVDRHALKTPNKKAIIFEGDEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRK---- 115

Query: 86  NQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAEN 145
              GD  VAV +      I  LLA+ + GA +  +        ++  +N+    +VI  +
Sbjct: 116 ---GDT-VAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTD 171

Query: 146 EQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNE--------------- 190
           E        + + ++                    +   + +                  
Sbjct: 172 ESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYY 231

Query: 191 -----QSNDIAIVLYTSGSTGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGAFKTAL 244
                 S D   +LYTSGSTG PKGV+      +L  L     TF     +         
Sbjct: 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIG 291

Query: 245 TFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSML 302
                   ++GPLL   C  ++        N  +    ++++KV +  + P+ LR + 
Sbjct: 292 WITGHTYVVYGPLLYG-CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 348

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  109 bits (272), Expect = 2e-27
 Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 19/287 (6%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           L    E+ AAL      +      +        TY+E+   + +L  GL           
Sbjct: 13  LWDFLERAAALFGRKEVVSRLHTGEVHRT----TYAEVYQRARRLMGGLRALGVGV---- 64

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
               GD  VA         ++   AV   GA     +     + + +ILN A   +++ +
Sbjct: 65  ----GDR-VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 119

Query: 145 NEQACENLAYKGRT-VLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSG 203
                   A +G    +    +    A   +          +D           + YT+G
Sbjct: 120 PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTG 179

Query: 204 STGIPKGVRLPHE-VILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARC 262
           +TG+PKGV   H  ++L+ LA           + V      +  V+A    +   L    
Sbjct: 180 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL---- 235

Query: 263 GGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTG 309
            G   +      +P  L+   +   V     VP++  ++  +L+ TG
Sbjct: 236 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG 282

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  107 bits (267), Expect = 1e-26
 Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 34/270 (12%)

Query: 21  KEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTK 80
           ++K +H++FE+  +  P+N A++ E +    L     TY ELN  +NQLAR  +     K
Sbjct: 21  RDKTIHQLFEEQVSKRPNNVAIVCENE---QL-----TYHELNVKANQLARIFIEKGIGK 72

Query: 81  AVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLL 140
                       V + +  S  L   +LAV KAG AY+P+D+  P++R+++IL++++  +
Sbjct: 73  --------DTL-VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 123

Query: 141 VIAENEQA--CENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIV 198
           ++ +        N+ + G+  +       +    ++ ++P            +S D+A V
Sbjct: 124 LLTQKHLVHLIHNIQFNGQVEIFEEDTIKI-REGTNLHVP-----------SKSTDLAYV 171

Query: 199 LYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLL 258
           +YTSG+TG PKG  L H+ I N   +   +   +  +R+G F +  +F  +V E++  LL
Sbjct: 172 IYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASI-SFDASVWEMFMALL 230

Query: 259 SARCGGVLIIPRDVTRNPDQLIGTLEKYKV 288
           +     + II +D   +  +    + + ++
Sbjct: 231 T--GASLYIILKDTINDFVKFEQYINQKEI 258

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  100 bits (249), Expect = 3e-24
 Identities = 46/274 (16%), Positives = 90/274 (32%), Gaps = 25/274 (9%)

Query: 19  IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLH 78
            +  +    +    AA   D  A+               +Y EL++ +++LA G      
Sbjct: 21  CWAGETFGDLLRDRAAKYGDRIAITCGNT---HW-----SYRELDTRADRLAAGFQKLGI 72

Query: 79  TKAVPNENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARP 138
            +         D  V V L       +V+ A+++ GA  +    +     + +    A  
Sbjct: 73  QQ--------KDR-VVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEA 123

Query: 139 LLVIAENEQACENLAYKGRTVLS-LPQLRLLSASLSHNNIPGESMLHSDNNNE---QSND 194
              I  +  +  +     R V S LP L+ +  +           LH++       +S+D
Sbjct: 124 AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSD 183

Query: 195 IAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW 254
           +A +  + GSTG+ K +   H+  +  L           S    A             + 
Sbjct: 184 VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYP----LS 239

Query: 255 GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKV 288
            P +         +    + +PD     +E+ KV
Sbjct: 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKV 273

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 98.2 bits (243), Expect = 2e-23
 Identities = 38/283 (13%), Positives = 85/283 (30%), Gaps = 19/283 (6%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           ++ +  + A  +PD+ AL    +          T++EL +    +A  L           
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRL------THAELRARVEAVAARLHADGLRP---- 53

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                   VAV    S+ ++  +LA+ + GA    L+       +  ++        +  
Sbjct: 54  ----QQR-VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA 108

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGS 204
             +   +  ++  +   +  L  L         P       ++   +    A + YTSG+
Sbjct: 109 VGRQVADAIFQSGSGARIIFLGDLVRDGE----PYSYGPPIEDPQREPAQPAFIFYTSGT 164

Query: 205 TGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGG 264
           TG+PK   +P     +R+ +                     +             A  G 
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224

Query: 265 VLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM 307
            +++      +  QL+   +   +         L +       
Sbjct: 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS 267

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 94.6 bits (234), Expect = 3e-22
 Identities = 51/289 (17%), Positives = 106/289 (36%), Gaps = 31/289 (10%)

Query: 25  LHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN 84
           LH+  ++ A + P   A      + +       TY+E    S +LA  +  +        
Sbjct: 23  LHKAMKRYALV-PGTIAFTDAHIEVNI------TYAEYFEMSVRLAEAMKRYGLNT---- 71

Query: 85  ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAE 144
                   + V    S      +L     G A  P +    E+ + + +N ++P +V   
Sbjct: 72  ----NHR-IVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 126

Query: 145 NEQACENLAYKGRTVLSLPQLRLLSASLSHNNIPGESMLHSD------------NNNEQS 192
            +   + L  + +  +    + + S +         + + S              + ++ 
Sbjct: 127 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 186

Query: 193 NDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSE 252
             IA+++ +SGSTG+PKGV LPH     R +        +      A  + + F      
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG- 245

Query: 253 IWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSM 301
           ++  L    CG  +++        +  + +L+ YK++  +LVP+L    
Sbjct: 246 MFTTLGYLICGFRVVLMYR--FEEELFLRSLQDYKIQSALLVPTLFSFF 292

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.1e-37  Score=299.61  Aligned_cols=267  Identities=21%  Similarity=0.233  Sum_probs=183.3

Q ss_pred             HHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH
Q psy8308          26 HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ  105 (311)
Q Consensus        26 ~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~  105 (311)
                      .++++++++.+||++|+++.+++..  ..+++||+||.++|+++|++|++.        |+++||+ |+++++|++++++
T Consensus        75 ~n~ldrh~~~~~d~~Ali~~~~~~~--~~~~~TY~eL~~~v~~~A~~L~~~--------Gv~~Gd~-V~i~~~n~~e~iv  143 (643)
T d1pg4a_          75 ANCLDRHLQENGDRTAIIWEGDDTS--QSKHISYRELHRDVCRFANTLLDL--------GIKKGDV-VAIYMPMVPEAAV  143 (643)
T ss_dssp             HHHTGGGHHHHTTSEEEEEECSSTT--CEEEEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEEECCSSHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEEecCCC--CceEEeHHHHHHHHHHHHHHHHHc--------CCCCCCE-EEEecccchHHHH
Confidence            5677888899999999997654321  124789999999999999999865        7888996 9999999999999


Q ss_pred             HHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhh----------hcccccccchhhhhhhcccCCC
Q psy8308         106 VLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLA----------YKGRTVLSLPQLRLLSASLSHN  175 (311)
Q Consensus       106 ~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  175 (311)
                      ++|||+++|++++|+++.++++++.+++++++++++|+++........          ........+.............
T Consensus       144 ~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~  223 (643)
T d1pg4a_         144 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI  223 (643)
T ss_dssp             HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC
T ss_pred             HHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc
Confidence            999999999999999999999999999999999999997642211000          0000000011110000000000


Q ss_pred             CCC-----------CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHH-HHhhcCCCCCCccceeecc
Q psy8308         176 NIP-----------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAW-QWATFPYSPSERVGAFKTA  243 (311)
Q Consensus       176 ~~~-----------~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  243 (311)
                      ...           ............+++|+++|+|||||||.||||++||++++..... ....+.+.+.++....   
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~---  300 (643)
T d1pg4a_         224 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT---  300 (643)
T ss_dssp             CCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC---
T ss_pred             ccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEe---
Confidence            000           0000011122346789999999999999999999999997755433 3344577777765332   


Q ss_pred             hhhhhhHHHHHHhhHhhcCCcEEEeCCCC--CCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         244 LTFVDAVSEIWGPLLSARCGGVLIIPRDV--TRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      .++.|..+..+..+..+..|+++++....  .++|..+++.|++++||+++++|+++++|+++.+
T Consensus       301 ~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  365 (643)
T d1pg4a_         301 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD  365 (643)
T ss_dssp             SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred             CChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcc
Confidence            33332222222222223347777765432  3589999999999999999999999999998764

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-37  Score=294.29  Aligned_cols=268  Identities=21%  Similarity=0.170  Sum_probs=181.6

Q ss_pred             HHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChhHHH
Q psy8308          26 HRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSGLIQ  105 (311)
Q Consensus        26 ~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e~~~  105 (311)
                      .+++++||+++||++|+++.+++..  ..+++||+||.++|+++|++|+..       .|+++||+ |+++++|+++|++
T Consensus        62 ~n~ldr~a~~~pd~~Ali~~~~~~g--~~~~~Ty~eL~~~v~~~A~~L~~~-------~Gv~~Gd~-V~i~~~n~~e~~~  131 (640)
T d1ry2a_          62 YNCVDRHALKTPNKKAIIFEGDEPG--QGYSITYKELLEEVCQVAQVLTYS-------MGVRKGDT-VAVYMPMVPEAII  131 (640)
T ss_dssp             HHHTHHHHTTCTTSEEEEEECSSTT--CCEEEEHHHHHHHHHHHHHHHHHT-------SCCCTTCE-EEECCCSSHHHHH
T ss_pred             HHHHHHHHhhCCCCEEEEEEecCCC--CeeEEeHHHHHHHHHHHHHHHHHh-------cCCCCCCE-EEEEeCCCHHHHH
Confidence            7889999999999999997643221  124789999999999999999632       37888996 9999999999999


Q ss_pred             HHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhh--------cccccccchhhhhhhcc-cCCCC
Q psy8308         106 VLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAY--------KGRTVLSLPQLRLLSAS-LSHNN  176 (311)
Q Consensus       106 ~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~  176 (311)
                      ++|||+++|+++||+++.++++++.+++++++++++++...........        .......+......... .....
T Consensus       132 ~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (640)
T d1ry2a_         132 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA  211 (640)
T ss_dssp             HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred             HHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccc
Confidence            9999999999999999999999999999999999999976432111000        00000000000000000 00000


Q ss_pred             CC-----------CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHH-hhcCCCCCCccceeecch
Q psy8308         177 IP-----------GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQW-ATFPYSPSERVGAFKTAL  244 (311)
Q Consensus       177 ~~-----------~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  244 (311)
                      ..           .............++|+++|+|||||||.||||+++|++++.+..... ....+.+.++..   ...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l---~~~  288 (640)
T d1ry2a_         212 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF---TAG  288 (640)
T ss_dssp             CCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEE---ECS
T ss_pred             ccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCccccee---ecc
Confidence            00           000000111223568999999999999999999999999877654443 345667777643   333


Q ss_pred             hhhhhHHHHHHhhHhhcCCcEEEeCCC--CCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHh
Q psy8308         245 TFVDAVSEIWGPLLSARCGGVLIIPRD--VTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLK  306 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~  306 (311)
                      ++.|..+..+..+..+..|+++++...  ..+++..+++.|++++||+++++|+++++|+++.+
T Consensus       289 pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  352 (640)
T d1ry2a_         289 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD  352 (640)
T ss_dssp             CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT
T ss_pred             chhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc
Confidence            433333322222222233655555433  23589999999999999999999999998876543

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.9e-37  Score=285.98  Aligned_cols=269  Identities=17%  Similarity=0.169  Sum_probs=192.1

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      .|+++||.++|+++|+++||++|+++.++        ++||+||.++++++|++|++.        |+++||+ |+++++
T Consensus        21 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~--------Gv~~gd~-V~i~~~   83 (536)
T d1mdba_          21 CWAGETFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKL--------GIQQKDR-VVVQLP   83 (536)
T ss_dssp             SSCSCCHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHH--------TCCTTCE-EEECCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHc--------CcCCcCE-EEEEeC
Confidence            45667999999999999999999998653        679999999999999999864        7788896 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhc----ccccccchhhhhhhcccCC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYK----GRTVLSLPQLRLLSASLSH  174 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  174 (311)
                      |+++|++++|||+++|+++||++|.++.+++.+++++++++++++++..........    ......+............
T Consensus        84 n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (536)
T d1mdba_          84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF  163 (536)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTS
T ss_pred             CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccc
Confidence            999999999999999999999999999999999999999999999754322111000    0000000000000000000


Q ss_pred             CCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHH
Q psy8308         175 NNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIW  254 (311)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
                      .............+...++|+++|+|||||||.||||++||+++..++......+.+.+.++.... .++.+.+.+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~l~~~~  242 (536)
T d1mdba_         164 LPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAA-LPMAHNYPLSSPG  242 (536)
T ss_dssp             EEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEEC-SCTTSHHHHHSSH
T ss_pred             cchhhcccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccc-cccccccceeecc
Confidence            000000000112223567899999999999999999999999999888777777788877765333 2333333222112


Q ss_pred             HhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhh
Q psy8308         255 GPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMT  308 (311)
Q Consensus       255 ~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~  308 (311)
                      . ......|.+++....  +++..+++.+++++++.+..+|..+..++......
T Consensus       243 ~-~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (536)
T d1mdba_         243 V-LGVLYAGGRVVLSPS--PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR  293 (536)
T ss_dssp             H-HHHHHTTCEEEECSS--SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC
T ss_pred             c-cccccccccccccCC--CCHHHHHHHHhhhccccccccchhhhhhhhhcccc
Confidence            1 112223567766653  57999999999999999999999999888876544

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-34  Score=272.45  Aligned_cols=270  Identities=17%  Similarity=0.175  Sum_probs=186.4

Q ss_pred             hhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCCh
Q psy8308          22 EKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSS  101 (311)
Q Consensus        22 ~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~  101 (311)
                      +.+|.++|+++|+++||++|+++...+.    ++++||+||.++++++|+.|.+.        |+++||+ |+++++|++
T Consensus        10 ~~~l~~~l~~~a~~~pd~~av~~~~~g~----~~~~Ty~el~~~~~~~A~~L~~~--------Gv~~gd~-V~i~~~n~~   76 (534)
T d1v25a_          10 ELNLWDFLERAAALFGRKEVVSRLHTGE----VHRTTYAEVYQRARRLMGGLRAL--------GVGVGDR-VATLGFNHF   76 (534)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECTTSC----EEEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSSH
T ss_pred             CCCHHHHHHHHHHHcCCCeEEEEecCCc----eEEEcHHHHHHHHHHHHHHHHHC--------CcCCCCE-EEEEeCCCH
Confidence            3479999999999999999998765432    23689999999999999999864        7788896 899999999


Q ss_pred             hHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCC--C
Q psy8308         102 GLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIP--G  179 (311)
Q Consensus       102 e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  179 (311)
                      +|++++|||+++|++++|+||.++.+++.++++.+++++++++............ ....+................  .
T Consensus        77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  155 (534)
T d1v25a_          77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPEGYLAYEE  155 (534)
T ss_dssp             HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCTTCEEHHH
T ss_pred             HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhh-cccccceeEEeecccccccccccc
Confidence            9999999999999999999999999999999999999999997654332211111 010011100000000000000  0


Q ss_pred             CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhh--cCCCCCCccceeecchhhhhhHHHHHHhh
Q psy8308         180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWAT--FPYSPSERVGAFKTALTFVDAVSEIWGPL  257 (311)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
                      ............++++++|+|||||||.||||+++|+++..+.......  ......++.   ....+++|.....+...
T Consensus       156 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~---~~~~p~~~~~~~~~~~~  232 (534)
T d1v25a_         156 ALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVV---LPVVPMFHVNAWCLPYA  232 (534)
T ss_dssp             HCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEE---EECSCTTSHHHHTHHHH
T ss_pred             cccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhccccccccccc---ccccchhhhccccccce
Confidence            0000111223457889999999999999999999999997655433322  233444443   23334333333222222


Q ss_pred             HhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhhhCC
Q psy8308         258 LSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKMTGT  310 (311)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~~~~  310 (311)
                      .....|..++.++  .+++..+.+.++++++|++..+|+++..++...+..+.
T Consensus       233 ~~~~g~~~v~~~~--~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~  283 (534)
T d1v25a_         233 ATLVGAKQVLPGP--RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH  283 (534)
T ss_dssp             HHHHTCEEEECTT--CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred             eeeecceeeeccc--cccccccchhhhhccccccccCchhhhhhhhhhccccc
Confidence            2222234444444  35799999999999999999999999999998776553

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=5.8e-34  Score=264.02  Aligned_cols=260  Identities=15%  Similarity=0.208  Sum_probs=187.4

Q ss_pred             hhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeCCChh
Q psy8308          23 KQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLAPSSG  102 (311)
Q Consensus        23 ~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~n~~e  102 (311)
                      +|+.++|+++|+++||++|+++.+.+      +++||+||.++++++|++|++.        |+++||+ |+++++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~--------Gv~~gd~-V~i~~~n~~~   66 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHAD--------GLRPQQR-VAVVAPNSAD   66 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECCSCHH
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHc--------CcCCCCE-EEEEeCCCHH
Confidence            58999999999999999999986542      2689999999999999999864        7788896 9999999999


Q ss_pred             HHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhh-c--ccccccchhhhhhhcccCCCCCCC
Q psy8308         103 LIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAY-K--GRTVLSLPQLRLLSASLSHNNIPG  179 (311)
Q Consensus       103 ~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~  179 (311)
                      |++++|||+++|++++|++|.++++++++++++++++++|++.......... .  ...+..+..........  .   .
T Consensus        67 ~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~---~  141 (503)
T d3cw9a1          67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPY--S---Y  141 (503)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEEC--C---C
T ss_pred             HHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhhccc--c---c
Confidence            9999999999999999999999999999999999999999875432211111 1  11111111111000000  0   0


Q ss_pred             CcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhHh
Q psy8308         180 ESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLLS  259 (311)
Q Consensus       180 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
                        .........+++++++++|||||||.||+|+++|+++..+.......+......... ....+++.+.....+..+..
T Consensus       142 --~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~  218 (503)
T d3cw9a1         142 --GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV-VLGLMPLYHVVGFFAVLVAA  218 (503)
T ss_dssp             --SCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCE-EEECSCTTSHHHHHTTHHHH
T ss_pred             --CCccccccchhhhhhhhcccccccccccccccccchhhhhhhhcccccccccccccc-ccccCccccccccccccccc
Confidence              001122234678999999999999999999999999988776665544433322111 22233333333333333444


Q ss_pred             hcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         260 ARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       260 ~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                      ...++..++...  +++..+...+.+++++.+..+|+.+..++.....
T Consensus       219 ~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  264 (503)
T d3cw9a1         219 LALDGTYVVVEE--FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAH  264 (503)
T ss_dssp             HHTTCEEEECSS--CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHH
T ss_pred             cccccccccccc--cChHHhhhhhhhceeecccccccccccccccccc
Confidence            445667777664  4799999999999999999999999988886554

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=4.5e-34  Score=266.84  Aligned_cols=250  Identities=27%  Similarity=0.406  Sum_probs=178.3

Q ss_pred             hhhhhhHHHHHHHHHhhCCCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcEEEEEeC
Q psy8308          19 IYKEKQLHRIFEKNAALSPDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPNENQDGDHIVAVSLA   98 (311)
Q Consensus        19 ~~~~~~l~~~~~~~a~~~pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~g~~~gd~~Vai~~~   98 (311)
                      ..++.||.++|+++|+++||++|+++.++        ++||+||.++++++|++|++.        |+++||+ |+++++
T Consensus        19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~--------Gv~~gd~-Vai~~~   81 (514)
T d1amua_          19 YPRDKTIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEK--------GIGKDTL-VGIMME   81 (514)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHT--------TCCTTCE-EEEECC
T ss_pred             CCCCCcHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHc--------CcCCcCE-EEEEeC
Confidence            44568999999999999999999998653        679999999999999999864        7788886 999999


Q ss_pred             CChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcccccccchhhhhhhcccCCCCCC
Q psy8308          99 PSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKGRTVLSLPQLRLLSASLSHNNIP  178 (311)
Q Consensus        99 n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (311)
                      |+++|+++++||+++|++++|+|+.++.+++.++++.++++++|++...................      .... ... 
T Consensus        82 n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~-  153 (514)
T d1amua_          82 KSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIF------EEDT-IKI-  153 (514)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEEC------CCST-TTT-
T ss_pred             CCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccccccccc------cccc-ccc-
Confidence            99999999999999999999999999999999999999999999976543322111110000000      0000 000 


Q ss_pred             CCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhcCCCCCCccceeecchhhhhhHHHHHHhhH
Q psy8308         179 GESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATFPYSPSERVGAFKTALTFVDAVSEIWGPLL  258 (311)
Q Consensus       179 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
                        ........+..++|+++|+|||||||.||||++||+++................++...+ .++.+..+...++..+.
T Consensus       154 --~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~-~p~~~~~~~~~~~~~l~  230 (514)
T d1amua_         154 --REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQF-ASISFDASVWEMFMALL  230 (514)
T ss_dssp             --SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEEC-SCTTSTHHHHHHHHHHT
T ss_pred             --cccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccce-ecccccccccccccccc
Confidence              000111223457899999999999999999999999999888777777777777764332 33333333333333333


Q ss_pred             hhcCCcEEEeCC-CCCCChhHHHHHHhhcCceEEEeChHHHH
Q psy8308         259 SARCGGVLIIPR-DVTRNPDQLIGTLEKYKVERLVLVPSLLR  299 (311)
Q Consensus       259 ~~~~g~~~v~~~-~~~~~p~~~~~~i~~~~vt~~~~vP~~~~  299 (311)
                         .|+.+++.. ....+....++.+..+.++.+..+|+...
T Consensus       231 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (514)
T d1amua_         231 ---TGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV  269 (514)
T ss_dssp             ---TTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHT
T ss_pred             ---ccccccccccccccchhhhhhhhhhhhcccccceeeecc
Confidence               355555443 22346788999999999999999998754

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.5e-33  Score=264.58  Aligned_cols=277  Identities=18%  Similarity=0.249  Sum_probs=182.1

Q ss_pred             cccCCCchhhhhhhhhhHHHHHHHHHhhC---CCceEEEecccCccccccCcccHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy8308           8 ILKGRDTALEKIYKEKQLHRIFEKNAALS---PDNTALIFEEQDKDTLVITNETYSELNSASNQLARGLLHFLHTKAVPN   84 (311)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~---pd~~Ai~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~   84 (311)
                      +.||++-  ....++.++.++|.++++++   |+++|+.+.+.+      +++||+||.++++++|+.|++.        
T Consensus         4 ~~~~p~p--~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~--------   67 (541)
T d1lcia_           4 IKKGPAP--FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRY--------   67 (541)
T ss_dssp             SEECCCC--SSCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHH--------
T ss_pred             CCcCCCC--CCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCC------eEeeHHHHHHHHHHHHHHHHHc--------
Confidence            5667552  12333457777777777666   888888865432      3689999999999999999865        


Q ss_pred             CCCCCCcEEEEEeCCChhHHHHHHHHHHhCCeEEeCCCCCcHHHHHHHHHHcCCcEEEecCchhhhhhhhcc-----ccc
Q psy8308          85 ENQDGDHIVAVSLAPSSGLIQVLLAVWKAGAAYLPLDVTAPEQRVKHILNEARPLLVIAENEQACENLAYKG-----RTV  159 (311)
Q Consensus        85 g~~~gd~~Vai~~~n~~e~~~~~la~~~~G~v~vp~~~~~~~~el~~~l~~s~~~~vi~~~~~~~~~~~~~~-----~~~  159 (311)
                      |+++||+ |+++++|+++|+++++||+++|+++||+|+.++.+++.+++++++++++|++++..........     ..+
T Consensus        68 Gi~~Gd~-Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  146 (541)
T d1lcia_          68 GLNTNHR-IVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI  146 (541)
T ss_dssp             TCCTTCE-EEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEE
T ss_pred             CcCCCCE-EEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcccccccccee
Confidence            7788896 9999999999999999999999999999999999999999999999999998754332211110     000


Q ss_pred             c---------cchhhhhhhcccCCCCCCCCcccCCCCCCCCCCCeEEEEEccCCCCCCcceEecchhHHHHHHHHHhhc-
Q psy8308         160 L---------SLPQLRLLSASLSHNNIPGESMLHSDNNNEQSNDIAIVLYTSGSTGIPKGVRLPHEVILNRLAWQWATF-  229 (311)
Q Consensus       160 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-  229 (311)
                      .         ...................  ..........++++++|+|||||||.||||++||++++.......... 
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~  224 (541)
T d1lcia_         147 IIMDSKTDYQGFQSMYTFVTSHLPPGFNE--YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF  224 (541)
T ss_dssp             EETTCSSCBTTBEEHHHHHHHHSCTTCCT--TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT
T ss_pred             eeecCCccccccchhhhhhhhhccccccc--cccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc
Confidence            0         0000110000000000000  001112234568899999999999999999999999877655443322 


Q ss_pred             --CCCCCCccceeecchhhhhhHHHHHHhhHhhcCCcEEEeCCCCCCChhHHHHHHhhcCceEEEeChHHHHHHHHHHhh
Q psy8308         230 --PYSPSERVGAFKTALTFVDAVSEIWGPLLSARCGGVLIIPRDVTRNPDQLIGTLEKYKVERLVLVPSLLRSMLMFLKM  307 (311)
Q Consensus       230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~p~~~~~~i~~~~vt~~~~vP~~~~~ll~~~~~  307 (311)
                        ...+.++   ....++++|.....+..+. ...++..+....  .++...+..+.++++|.+.++|+++..++...+.
T Consensus       225 ~~~~~~~~~---~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~  298 (541)
T d1lcia_         225 GNQIIPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR--FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI  298 (541)
T ss_dssp             SCCCCTTCE---EEECSCTTSHHHHHHHHHH-HHHTCEEEECSS--CCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG
T ss_pred             ccccccccc---ccccccccccccccccccc-cccccccccccc--cccchhHHHHhhhhccccccCccccccccccccc
Confidence              2344444   3344455554443332222 223445555442  4688999999999999999999999999886654


Q ss_pred             hC
Q psy8308         308 TG  309 (311)
Q Consensus       308 ~~  309 (311)
                      ..
T Consensus       299 ~~  300 (541)
T d1lcia_         299 DK  300 (541)
T ss_dssp             GG
T ss_pred             cc
Confidence            43