Psyllid ID: psy8321

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MTHDRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mthdrsavmrpdcpldkdllgyqTWGLLHTMAayypdhptphqqrdMYNFFTLLAQFYPCATCARDFANllrvrppvttsrkdLSQWLCWVHNTvnrklgkpifdcalvderwkdgwedgscdf
Flexible Loop (DISEMBL)
mthdrsavmrpdcpldKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTtsrkdlsqwLCWVHNtvnrklgkpifdCALVDERWKDgwedgscdf
Low Complexity Region (SEG)
MTHDRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF
Disordered region (IsUnstruct)
************CPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGW*******
Disordered Region (DISOPRED)
*****************DLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVR******RKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSC**
Disordered Region (DISEMBL)
*********RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF
Disordered Region (DISPRO)
********MRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTHDRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
MGI|MGI:107757	198	Gfer "growth factor, erv1 (S.	0.959	0.601	0.571	1.9e-37
UNIPROTKB|E1BF52	205	GFER "Uncharacterized protein"	0.959	0.580	0.571	3.9e-37
RGD|61845	198	Gfer "growth factor, augmenter	0.959	0.601	0.571	3.9e-37
UNIPROTKB|F1NSV1	189	GFER "Uncharacterized protein"	0.911	0.597	0.592	4.9e-37
UNIPROTKB|E2QWZ7	358	GFER "Uncharacterized protein"	0.959	0.332	0.579	4.9e-37
FB|FBgn0031068	261	Alr "Augmenter of liver regene	0.919	0.436	0.605	1.7e-36
UNIPROTKB|H3BQQ4	130	GFER "Growth factor, augmenter	0.959	0.915	0.571	2.1e-36
UNIPROTKB|P55789	205	GFER "FAD-linked sulfhydryl ox	0.959	0.580	0.571	2.1e-36
UNIPROTKB|F1RFB9	205	GFER "Uncharacterized protein"	0.959	0.580	0.554	5.7e-36
ZFIN|ZDB-GENE-060810-186	191	gfer "growth factor, augmenter	0.927	0.602	0.534	1.5e-33

MGI|MGI:107757 Gfer "growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)" [Mus musculus (taxid:10090)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 68/119 (57%), Positives = 82/119 (68%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R    R DCP D++ LG  TW  LHT+AAYYPD PTP QQ+DM  F  + ++FYPC  CA
Sbjct:    80 RDIKFREDCPQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECA 139

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    +    P T++R   SQWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct:   140 EDIRKRIGRNQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 198

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|E1BF52 GFER "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 68/119 (57%), Positives = 84/119 (70%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R +  R DCP D++ LG  +W +LHT+AAYYPD PTP QQ+DM  F  L ++FYPC  CA
Sbjct:    87 RDSKFREDCPQDREELGRNSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECA 146

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    +    P T +R   +QWLC +HN VNRKLGKP FDC+LVDERW+DGW+DGSCD
Sbjct:   147 EDIRKRIYRDQPDTRTRVSFTQWLCRLHNEVNRKLGKPDFDCSLVDERWRDGWKDGSCD 205

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

RGD|61845 Gfer "growth factor, augmenter of liver regeneration" [Rattus norvegicus (taxid:10116)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 68/119 (57%), Positives = 82/119 (68%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R    R DCP D++ LG  TW  LHT+AAYYPD PTP QQ+DM  F  + ++FYPC  CA
Sbjct:    80 RDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECA 139

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    +    P T++R   SQWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct:   140 EDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 198

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO;ISS

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO;ISS

UNIPROTKB|F1NSV1 GFER "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 67/113 (59%), Positives = 82/113 (72%)

Query:    11 PDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANL 70
             PDCPLD + LG  TW  LHTMAAYYP+ P+  QQ++M +F  L ++FYPC  CA D    
Sbjct:    77 PDCPLDSEQLGRSTWAFLHTMAAYYPERPSGTQQQEMRDFIHLFSKFYPCEHCAEDLRER 136

Query:    71 LRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
             LR   P T++R + SQWLC +HN VNRKLGK  FDC+ VDERW+DGW+DGSCD
Sbjct:   137 LRTNQPDTSNRNNFSQWLCLLHNEVNRKLGKSEFDCSRVDERWRDGWKDGSCD 189

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2QWZ7 GFER "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 69/119 (57%), Positives = 83/119 (69%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R    R DCP D++ LG  +W +LHT+AAYYPD PTP QQRDM  F  L ++FYPC  CA
Sbjct:   240 RDGKFREDCPEDREELGRHSWAVLHTLAAYYPDLPTPEQQRDMTQFIHLFSKFYPCEECA 299

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    +    P T +R  L+QWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct:   300 EDIRKRICRNQPDTRTRACLTQWLCRLHNEVNRKLGKPDFDCSQVDERWRDGWKDGSCD 358

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

FB|FBgn0031068 Alr "Augmenter of liver regeneration" [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 69/114 (60%), Positives = 83/114 (72%)

Query:    10 RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFAN 69
             R DCPLDK  LG  TWGLLHTMAA+Y D+PT  ++RDM  FF +L++ YPC  CA+DF  
Sbjct:   148 RDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRT 207

Query:    70 LLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              L V P    S+K+L+ WLC  HN VN KLGKP+FDC  V+ERW+DGW DGSCD
Sbjct:   208 DLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCD 261

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042246 "tissue regeneration" evidence=IEP;IMP

UNIPROTKB|H3BQQ4 GFER "Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 68/119 (57%), Positives = 82/119 (68%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R    R DCP D++ LG  +W +LHT+AAYYPD PTP QQ+DM  F  L ++FYPC  CA
Sbjct:    12 RDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECA 71

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    L    P T +R   +QWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct:    72 EDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 130

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|P55789 GFER "FAD-linked sulfhydryl oxidase ALR" [Homo sapiens (taxid:9606)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 68/119 (57%), Positives = 82/119 (68%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R    R DCP D++ LG  +W +LHT+AAYYPD PTP QQ+DM  F  L ++FYPC  CA
Sbjct:    87 RDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECA 146

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    L    P T +R   +QWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct:   147 EDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 205

GO:0008083 "growth factor activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0007283 "spermatogenesis" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1RFB9 GFER "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 66/119 (55%), Positives = 82/119 (68%)

Query:     5 RSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCA 64
             R +  R DCP D++ LG  +W +LHT+AAYYPD PTP QQ+DM     L ++FYPC  CA
Sbjct:    87 RDSKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQLVNLFSKFYPCEECA 146

Query:    65 RDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
              D    +    P T +R   +QWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct:   147 EDIRRRICRNQPDTRTRAHFTQWLCRLHNEVNRKLGKPEFDCSQVDERWRDGWKDGSCD 205

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-060810-186 gfer "growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 62/116 (53%), Positives = 80/116 (68%)

Query:     9 MRP-DCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDF 67
             ++P +CPLD++ LG  +W  LHTMAAYYPD P+  QQ +M  F  L ++ +PC  CA D 
Sbjct:    76 LKPVECPLDREELGRSSWSFLHTMAAYYPDAPSTEQQLEMTQFINLFSKVFPCDECAEDL 135

Query:    68 ANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
                L+   P   SR  LSQWLC +HN +N +LGKP FDC+ VDERW+DGW+DGSCD
Sbjct:   136 RTRLKTNRPDAGSRHKLSQWLCRLHNDINIRLGKPEFDCSRVDERWRDGWKDGSCD 191

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP;IDA

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=IMP;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001889 "liver development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.3.2	0.824
3rd Layer	1.8.3	0.766

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
COG5054	181	COG5054, ERV1, Mitochondrial sulfhydryl oxidase in	2e-43
pfam04777	95	pfam04777, Evr1_Alr, Erv1 / Alr family	3e-37

>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

 Score =  140 bits (353), Expect = 2e-43
 Identities = 49/104 (47%), Positives = 64/104 (61%)

Query: 16  DKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP 75
           D + LG  +W LLHT+AA YP  PTP Q+ D+ +F  L +  YPC  C++ F  LL V P
Sbjct: 78  DVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYP 137

Query: 76  PVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWED 119
           P  +SR+  + W C VHN VN KLGKP FDC   +ER+  G + 
Sbjct: 138 PQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCDT 181

Length = 181

>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family

 Score =  121 bits (305), Expect = 3e-37
 Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 24  TWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKD 83
            W LLHT+AA YPD+PTP ++  + +F    + FYPC  CA  F  +L   PP  +SR D
Sbjct: 3   LWTLLHTLAARYPDNPTPEEKEVLKSFLGSFSHFYPCEECAEHFQKILAKNPPQVSSRDD 62

Query: 84  LSQWLCWVHNTVNRKLGKPIF-DCALVDERWKD 115
           LS WLC  HN VN +LGKP+F     V ER+ D
Sbjct: 63  LSLWLCEAHNEVNARLGKPLFCSDPKVKERYPD 95

Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian orthologue of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane an d it thought to operate downstream of the mitochondrial ABC transporter. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG3355|consensus	177		100.0
COG5054	181	ERV1 Mitochondrial sulfhydryl oxidase involved in	100.0
PF04777	95	Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 B	100.0
KOG1731|consensus	606		99.73
PHA03005	96	sulfhydryl oxidase; Provisional	99.21
PF04805	70	Pox_E10: E10-like protein conserved region; InterP	95.9

>KOG3355|consensus

Probab=100.00  E-value=3.4e-50  Score=296.91  Aligned_cols=115  Identities=60%  Similarity=1.182  Sum_probs=113.1

Q ss_pred             CCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy8321          10 RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC   89 (124)
Q Consensus        10 ~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~   89 (124)
                      ...||+++++||||+|+|||||||+||+.||.+||..|+.||.+|+.+|||.+|++||+++++++||+|+||+++.+|+|
T Consensus        63 ~~~~~~~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C  142 (177)
T KOG3355|consen   63 RKGDPPDKEELGRSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLC  142 (177)
T ss_pred             hcCCCchHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCCChhcHHHhhccCCCCCCCCC
Q psy8321          90 WVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCDF  124 (124)
Q Consensus        90 ~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~~~~  124 (124)
                      .+||.||++||||.|||+.++|||++||+||+||-
T Consensus       143 ~vHN~VNekLgKp~fdC~~v~erw~~g~~~~~~d~  177 (177)
T KOG3355|consen  143 HVHNKVNEKLGKPKFDCRTVDERWRDGWKDGSCDR  177 (177)
T ss_pred             HHHHHHHHHcCCCCCchhHHHHHHhchhhhcCCCC
Confidence            99999999999999999999999999999999983

>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-43  Score=261.42  Aligned_cols=110  Identities=45%  Similarity=0.854  Sum_probs=107.4

Q ss_pred             CCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy8321          10 RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC   89 (124)
Q Consensus        10 ~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~   89 (124)
                      +...|++++++|||+|+|||||||+||..||.+||..++.||.+|+.+|||.+|++||++++..+||+|+||+++..|+|
T Consensus        72 ~k~d~~~~~elGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~C  151 (181)
T COG5054          72 TKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWAC  151 (181)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy8321          90 WVHNTVNRKLGKPIFDCALVDERWKDGWED  119 (124)
Q Consensus        90 ~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~  119 (124)
                      ++||.||+|||||.|||+.+.|||.+||++
T Consensus       152 evHN~VNekL~Kp~~dC~~~~e~~~~G~~~  181 (181)
T COG5054         152 EVHNKVNEKLGKPKFDCDTWNERYDCGCDT  181 (181)
T ss_pred             HHHHHHHHHhCCCCcccchhHHHhhccCCC
Confidence            999999999999999999999999999975

>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins

Probab=100.00  E-value=4.1e-36  Score=203.85  Aligned_cols=94  Identities=44%  Similarity=0.929  Sum_probs=90.3

Q ss_pred             hhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhhhCC
Q psy8321          22 YQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGK  101 (124)
Q Consensus        22 ~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~rLgK  101 (124)
                      +|+|+|||++|++||+.|+..+++.+..|+.+|..+|||.+|+.||.++++++|++|+||+++++|||++||.||+||||
T Consensus         1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k   80 (95)
T PF04777_consen    1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK   80 (95)
T ss_dssp             HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-ChhcHHHhhcc
Q psy8321         102 PIF-DCALVDERWKD  115 (124)
Q Consensus       102 p~~-~c~~~~~rw~~  115 (124)
                      |++ ++..+.++|.+
T Consensus        81 ~~~~~~~~~~~~~~~   95 (95)
T PF04777_consen   81 PIFCDDPKFKEQWPT   95 (95)
T ss_dssp             STTTSGTTHHHHHT-
T ss_pred             CCCCCcHHHHhHcCC
Confidence            996 88899999964

Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....

>KOG1731|consensus

Probab=99.73  E-value=5.1e-18  Score=144.61  Aligned_cols=81  Identities=21%  Similarity=0.427  Sum_probs=65.7

Q ss_pred             cccchhhhHHHHHHhhcCCCCCCHHHH----HHHHHHHHHhhhhcCChhHHHHHHHHHhhCC-CCCCCHHHHHHHHHHHH
Q psy8321          18 DLLGYQTWGLLHTMAAYYPDHPTPHQQ----RDMYNFFTLLAQFYPCATCARDFANLLRVRP-PVTTSRKDLSQWLCWVH   92 (124)
Q Consensus        18 ~~lG~a~W~llHtlAa~~p~~pt~~~~----~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p-~~v~sr~~l~~Wl~~~H   92 (124)
                      ..+-+|+|+|||++|++....+...+-    ..+..|++   .||.|.+|+.||.+|..+.. ..|.++++.++|||++|
T Consensus       406 RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk---~FFgC~dC~~HF~~Ma~~~~~~~V~~ped~vLWLW~aH  482 (606)
T KOG1731|consen  406 RGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVK---NFFGCTDCREHFQKMATRRKLHRVRRPEDVVLWLWSAH  482 (606)
T ss_pred             CCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHH---HccCchHHHHHHHHHHHhhcccccCChhhhhhHHHHHh
Confidence            456679999999999997665544332    23333665   57999999999999998754 78999999999999999


Q ss_pred             HHHHhhhCC
Q psy8321          93 NTVNRKLGK  101 (124)
Q Consensus        93 N~VN~rLgK  101 (124)
                      |+||+||.+
T Consensus       483 N~VN~RLaG  491 (606)
T KOG1731|consen  483 NEVNARLAG  491 (606)
T ss_pred             hHHHHHhcc
Confidence            999999964

>PHA03005 sulfhydryl oxidase; Provisional

Probab=99.21  E-value=4.5e-11  Score=80.96  Aligned_cols=78  Identities=9%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             CccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH-HHHHH
Q psy8321          16 DKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC-WVHNT   94 (124)
Q Consensus        16 ~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~   94 (124)
                      +|..||||.|+++|.++.+|+.+++   .+..+..+.++...+||..|+.|..+.+.++...-++.-..+.++. .++|.
T Consensus         2 dPk~WGra~W~vIFivi~k~~~~~~---iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn   78 (96)
T PHA03005          2 NPKYWGRAIWTVIFIVISKAKLDGN---IEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN   78 (96)
T ss_pred             CcchhhhhHHHHHHHHHHhccCCCc---HHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence            6789999999999999999998874   4566677788889999999999999999988765454445555544 77775


Q ss_pred             HH
Q psy8321          95 VN   96 (124)
Q Consensus        95 VN   96 (124)
                      .-
T Consensus        79 la   80 (96)
T PHA03005         79 LA   80 (96)
T ss_pred             hc
Confidence            43

>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses

Probab=95.90  E-value=0.026  Score=36.36  Aligned_cols=48  Identities=8%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             HHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHH-HHHHHH
Q psy8321          48 YNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLC-WVHNTV   95 (124)
Q Consensus        48 ~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~V   95 (124)
                      +.=+..+...+||..||.|..+.+.++...-++--..+.++. .++|..
T Consensus         6 Kr~ly~I~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNnl   54 (70)
T PF04805_consen    6 KRKLYTICSTLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNNL   54 (70)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHHh
Confidence            334455567899999999999999988765444444454444 777653

; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3mbg_A	139	FAD-linked sulfhydryl oxidase ALR; flavin, flavopr	2e-45
1oqc_A	125	ALR, augmenter of liver regeneration; sulfhydryl o	2e-44
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	1e-39
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	5e-37
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	5e-31
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	6e-27
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	3e-23
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	1e-05
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	3e-04

>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET: FAD; 1.85A {Homo sapiens} PDB: 3r7c_A* Length = 139

 Score =  143 bits (361), Expect = 2e-45
 Identities = 68/120 (56%), Positives = 82/120 (68%)

Query: 4   DRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATC 63
            R    R DCP D++ LG  +W +LHT+AAYYPD PTP QQ+DM  F  L ++FYPC  C
Sbjct: 20  KRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEEC 79

Query: 64  ARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
           A D    L    P T +R   +QWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct: 80  AEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 139

>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase, helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus norvegicus} SCOP: a.24.15.1 PDB: 3o55_A* Length = 125

 Score =  140 bits (353), Expect = 2e-44
 Identities = 68/120 (56%), Positives = 82/120 (68%)

Query: 4   DRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATC 63
            R    R DCP D++ LG  TW  LHT+AAYYPD PTP QQ+DM  F  + ++FYPC  C
Sbjct: 6   KRDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEEC 65

Query: 64  ARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD 123
           A D    +    P T++R   SQWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSCD
Sbjct: 66  AEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 125

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A* Length = 117

 Score =  127 bits (321), Expect = 1e-39
 Identities = 39/109 (35%), Positives = 56/109 (51%)

Query: 14  PLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRV 73
              K  +G  +W   HT+ A +PD PTP ++  ++ F  L A+ YPC  C+  F  L+  
Sbjct: 5   DKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEK 64

Query: 74  RPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSC 122
            P  T+SR   + W C +HN VN  L K I+DCA + E +  G  D   
Sbjct: 65  YPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSDSDG 113

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} Length = 125

 Score =  121 bits (304), Expect = 5e-37
 Identities = 55/115 (47%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 10  RPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFAN 69
               P+ K+ LG  TW  LHT+AA YP+ PT  Q++D+    T+L++ YPC  CA  F  
Sbjct: 3   HMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKE 62

Query: 70  LLRVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERW-KDGWEDGSCD 123
           +LR  P    S+++ SQWLC VHNTVNR LGK +F C  VD RW K   E  SCD
Sbjct: 63  ILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCD 117

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V} Length = 106

 Score =  105 bits (263), Expect = 5e-31
 Identities = 21/102 (20%), Positives = 37/102 (36%)

Query: 15  LDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVR 74
                 G + W  LH  A ++ D P+  ++ +   +     +  PC  C     + L   
Sbjct: 2   SHMLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKN 61

Query: 75  PPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDG 116
           P    + +D   W    HN VN +L K I   +     ++  
Sbjct: 62  PLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQS 103

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus} Length = 114

 Score = 95.6 bits (237), Expect = 6e-27
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 15  LDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLR-- 72
           L   + G   W   H +   YP +PT   +R   N+F  L    PC  C   +   +   
Sbjct: 4   LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTG 63

Query: 73  ---VRPPVTTSRKDLSQWLCWVHNTVNRKLGKP-IFDCALVDERWK 114
              +   V  +R  L++W   VHN VN KL          V  +++
Sbjct: 64  KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYE 109

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A* Length = 261

 Score = 89.8 bits (222), Expect = 3e-23
 Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 24  TWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLA------QFYPCATCARDFANLLRVRPPV 77
            W L H +          H Q        L A       F+ C  CA  F  +       
Sbjct: 122 LWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHR 181

Query: 78  TTSRKDLSQWLCWVHNTVNRKL-GKPIFDCALVDERW 113
             S      WL   HN VN +L G P  D      +W
Sbjct: 182 VGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 25  WGLLHTMAAYYPDHPTPHQQRDMYNFFTLLA------QFYPCATCARDFANLLRVRPPVT 78
           W L H +      +   H Q        L A       F+ C   A  F  +        
Sbjct: 380 WVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQV 439

Query: 79  TSRKDLSQWLCWVHNTVNRKL 99
            S  +   WL   HN VN +L
Sbjct: 440 RSPSNAILWLWTSHNRVNARL 460

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 25  WGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDL 84
           W LLH +    P      +   + N+   +  F+ C  C   F           +  +D 
Sbjct: 305 WLLLHALTVNTPADRNVLEV--IQNY---IRYFFSCKECRDHFIQF------NFSPNEDP 353

Query: 85  SQWLCWVHNTVNRKL 99
              L   HN VN +L
Sbjct: 354 VLQLWRAHNNVNARL 368

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3u5s_A	126	FAD-linked sulfhydryl oxidase ALR; flavin, liver,	100.0
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	100.0
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	100.0
4e0h_A	106	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	100.0
4e0i_A	189	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	100.0
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	100.0
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	100.0
3td7_A	295	FAD-linked sulfhydryl oxidase R596; four helix-bun	99.97
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.92
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	99.9
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.88

>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*

Probab=100.00  E-value=1.6e-54  Score=308.35  Aligned_cols=120  Identities=52%  Similarity=0.969  Sum_probs=116.9

Q ss_pred             cccCCCCCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHH
Q psy8321           4 DRSAVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKD   83 (124)
Q Consensus         4 ~~~~~~~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~   83 (124)
                      .+++..+++||||+++|||++|++|||||++||++||.+++..++.||.+|+.+|||.+|+.||.++++++|++|+||++
T Consensus         7 ~~~~~~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~   86 (126)
T 3u5s_A            7 KRDTKFREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAA   86 (126)
T ss_dssp             GGGTCCCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHH
T ss_pred             cccccccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHH
Confidence            35566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhCCCCCChhcHHHhhccCCCCCCCC
Q psy8321          84 LSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSCD  123 (124)
Q Consensus        84 l~~Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~~~  123 (124)
                      |++|||.+||.||+|||||+|||+.+.|||++||+|||||
T Consensus        87 l~~Wl~~~HN~VN~rLgKp~fd~~~~~ery~~g~~dg~~d  126 (126)
T 3u5s_A           87 FTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGSXD  126 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTTCCTTSTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHccCCCCCCCC
Confidence            9999999999999999999999999999999999999998

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-52  Score=298.43  Aligned_cols=116  Identities=46%  Similarity=0.894  Sum_probs=100.5

Q ss_pred             CCCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy8321           9 MRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWL   88 (124)
Q Consensus         9 ~~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl   88 (124)
                      ++.+||+|+++||+|+|+||||||++||++|+.+++++++.||.+|+.||||.+|+.||.++++++|++|+||+++++||
T Consensus         2 ~~~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWL   81 (125)
T 2hj3_A            2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWL   81 (125)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred             CCCCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCCChhcHHHhhccCCCC-CCCCC
Q psy8321          89 CWVHNTVNRKLGKPIFDCALVDERWKDGWED-GSCDF  124 (124)
Q Consensus        89 ~~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~-~~~~~  124 (124)
                      |++||.||+|||||+|||++|+|||++||+| ||||+
T Consensus        82 w~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~~  118 (125)
T 2hj3_A           82 CHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCDL  118 (125)
T ss_dssp             HHHHHHHHHHTTCCCCCTTSHHHHCC-----------
T ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcCC
Confidence            9999999999999999999999999999999 99985

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*

Probab=100.00  E-value=2.3e-49  Score=278.69  Aligned_cols=110  Identities=35%  Similarity=0.709  Sum_probs=104.3

Q ss_pred             CCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy8321          12 DCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWV   91 (124)
Q Consensus        12 ~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~   91 (124)
                      .||+|+++||||+|+||||||++||++|+.++++.++.|+.+|+.||||.+|+.||.++++++|++|+||+++++|||++
T Consensus         3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~   82 (117)
T 1jr8_A            3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI   82 (117)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred             CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy8321          92 HNTVNRKLGKPIFDCALVDERWKDGWEDGS  121 (124)
Q Consensus        92 HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~  121 (124)
                      ||.||+|||||+|||+.++||||+||+||.
T Consensus        83 HN~VN~rL~kp~f~c~~~~er~~~g~~~~~  112 (117)
T 1jr8_A           83 HNKVNEYLKKDIYDCATILEDYDCGCSDSD  112 (117)
T ss_dssp             HHHHHHHTTCCCCCCTTHHHHTCCCC----
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHhcCCCCcc
Confidence            999999999999999999999999998874

>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-47  Score=264.00  Aligned_cols=105  Identities=45%  Similarity=1.025  Sum_probs=102.7

Q ss_pred             CCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q psy8321          15 LDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNT   94 (124)
Q Consensus        15 ~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~   94 (124)
                      +|+++|||++|++|||||++||++|+.+++..++.||.+|+.+|||++||.||.++++++|+.++||++|++|||.+||.
T Consensus         2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~   81 (106)
T 4e0h_A            2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK   81 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCChhcHHHhhccCCCC
Q psy8321          95 VNRKLGKPIFDCALVDERWKDGWED  119 (124)
Q Consensus        95 VN~rLgKp~~~c~~~~~rw~~~~~~  119 (124)
                      ||+|||||+|||+.+.+||++||+|
T Consensus        82 VN~rLgKp~f~~~~~~~ry~~g~~d  106 (106)
T 4e0h_A           82 VNKKLRKPKFDCNFWEKRWKDGWDE  106 (106)
T ss_dssp             HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999987

>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-47  Score=285.54  Aligned_cols=113  Identities=42%  Similarity=0.918  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHH
Q psy8321           7 AVMRPDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQ   86 (124)
Q Consensus         7 ~~~~~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~   86 (124)
                      +..+.+||||+++|||++|++|||||++||++|+.++++.++.||.+|+.+|||.+|+.||.++++++|+.++||++|++
T Consensus        77 ~~~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~~  156 (189)
T 4e0i_A           77 RTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELGR  156 (189)
T ss_dssp             SSCBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHH
T ss_pred             cCCcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy8321          87 WLCWVHNTVNRKLGKPIFDCALVDERWKDGWED  119 (124)
Q Consensus        87 Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~~~~~  119 (124)
                      |||.+||.||+|||||+|+|+.+.|||++||+|
T Consensus       157 Wl~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d  189 (189)
T 4e0i_A          157 WMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE  189 (189)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999987

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}

Probab=100.00  E-value=7.5e-44  Score=246.69  Aligned_cols=99  Identities=21%  Similarity=0.426  Sum_probs=96.2

Q ss_pred             cccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy8321          18 DLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNR   97 (124)
Q Consensus        18 ~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~   97 (124)
                      .+|||++|++|||||++||++||.++++.++.||+.|..+|||.+|+.||+++++++|+++.+++++++|||++||.||+
T Consensus         5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~   84 (106)
T 3gwl_A            5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN   84 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCChhcHHHhhccC
Q psy8321          98 KLGKPIFDCALVDERWKDG  116 (124)
Q Consensus        98 rLgKp~~~c~~~~~rw~~~  116 (124)
                      |||||+|||+++.|||+-.
T Consensus        85 rLgKp~fdc~~~~e~y~~~  103 (106)
T 3gwl_A           85 RLNKKIISWSEYKNIYEQS  103 (106)
T ss_dssp             HTTCCCCCHHHHHHHHTTT
T ss_pred             hhCCCCCCHHHHHHHHHHH
Confidence            9999999999999999864

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=1.1e-43  Score=248.61  Aligned_cols=102  Identities=25%  Similarity=0.509  Sum_probs=98.8

Q ss_pred             CCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCC----CC-CCCHHHHHHHH
Q psy8321          14 PLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP----PV-TTSRKDLSQWL   88 (124)
Q Consensus        14 p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p----~~-v~sr~~l~~Wl   88 (124)
                      ++++++|||++|++|||||++||++||++++++++.||.+|+.+|||.+|++||+++++++|    ++ |+||+++++||
T Consensus         3 g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~Wl   82 (114)
T 3gwn_A            3 GLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWF   82 (114)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHHH
T ss_pred             CCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999    88 99999999999


Q ss_pred             HHHHHHHHhhhCCCC-CChhcHHHhhcc
Q psy8321          89 CWVHNTVNRKLGKPI-FDCALVDERWKD  115 (124)
Q Consensus        89 ~~~HN~VN~rLgKp~-~~c~~~~~rw~~  115 (124)
                      |++||.||+|||||+ ++|++|.|||+.
T Consensus        83 c~~HN~VN~rLgKp~~~~~~~v~ery~~  110 (114)
T 3gwn_A           83 YDVHNAVNNKLEVDYGLSYEDVVNKYES  110 (114)
T ss_dssp             HHHHHHHHHHTTCCCCCCHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCCcCCHHHHHHHHHH
Confidence            999999999999996 789999999986

>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}

Probab=99.97  E-value=2.9e-32  Score=215.21  Aligned_cols=104  Identities=26%  Similarity=0.502  Sum_probs=93.1

Q ss_pred             CccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCC-----CCCCCHHHHHHHHHH
Q psy8321          16 DKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRP-----PVTTSRKDLSQWLCW   90 (124)
Q Consensus        16 ~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p-----~~v~sr~~l~~Wl~~   90 (124)
                      ....|||++|++|||||++||++|+.++++.++.||.+|+.+|||++|+.||.++++++|     +.++||++|+.|+|.
T Consensus        39 ~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~~  118 (295)
T 3td7_A           39 ITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYD  118 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHHHHHHH
T ss_pred             ccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999887     348999999999999


Q ss_pred             HHHHHHhhhCCCC-CChhcHH---HhhccCCCC
Q psy8321          91 VHNTVNRKLGKPI-FDCALVD---ERWKDGWED  119 (124)
Q Consensus        91 ~HN~VN~rLgKp~-~~c~~~~---~rw~~~~~~  119 (124)
                      +||.||++||||. ++.+.+.   |.|+.+|.+
T Consensus       119 iHN~VNkrLGKP~~lSYedv~kkYE~yrakC~k  151 (295)
T 3td7_A          119 VHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGK  151 (295)
T ss_dssp             HHHHHHHHHTCCCCCCHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHhccCCCC
Confidence            9999999999995 6665554   555667654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.92  E-value=7.5e-27  Score=196.78  Aligned_cols=95  Identities=20%  Similarity=0.271  Sum_probs=80.4

Q ss_pred             ccchhhhHHHHHHhhcCCCCCCH------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q psy8321          19 LLGYQTWGLLHTMAAYYPDHPTP------HQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVH   92 (124)
Q Consensus        19 ~lG~a~W~llHtlAa~~p~~pt~------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~H   92 (124)
                      ..=+|+|+||||||++||++|+.      .++..+..|...+..||||.+|+.||.+++++++++|+||+++++|||++|
T Consensus       374 g~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~~v~s~~~~~~Wlw~~H  453 (519)
T 3t58_A          374 GFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQVRSPSNAILWLWTSH  453 (519)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCCcCCCHHHHHHHHHHhh
Confidence            45569999999999999998765      455667777777778899999999999999999999999999999999999


Q ss_pred             HHHHhhh-----CCCCCChhcHHHhh
Q psy8321          93 NTVNRKL-----GKPIFDCALVDERW  113 (124)
Q Consensus        93 N~VN~rL-----gKp~~~c~~~~~rw  113 (124)
                      |.||+||     ++|.|++..+.-+-
T Consensus       454 N~VN~rL~~~~~~dp~f~k~q~P~~~  479 (519)
T 3t58_A          454 NRVNARLSGALSEDPHFPKVQWPPRE  479 (519)
T ss_dssp             HHHHHHHTTCTTCCTTSCCCSSSCTT
T ss_pred             CHHHhhcCCCCCCCCCCCccCCCCch
Confidence            9999999     56777766554333

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*

Probab=99.90  E-value=1.1e-24  Score=170.66  Aligned_cols=94  Identities=20%  Similarity=0.323  Sum_probs=75.6

Q ss_pred             cccchhhhHHHHHHhhcCCCCCCH---------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy8321          18 DLLGYQTWGLLHTMAAYYPDHPTP---------HQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWL   88 (124)
Q Consensus        18 ~~lG~a~W~llHtlAa~~p~~pt~---------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl   88 (124)
                      ...=+|+|+|||+||++++++|+.         +..++|+.||+.   ||||.+|++||+++++++|++|+|++++++||
T Consensus       116 RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~~---FypC~~Ca~hF~~~~~~~~~~v~sr~~~~lWL  192 (261)
T 3llk_A          116 RGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHY---FFGCRDCASHFEQMAAASMHRVGSPNAAVLWL  192 (261)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHGGGCCSHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhhCCCccCCHHHHHHHH
Confidence            345569999999999998877632         234677777775   59999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhC-----CCCCChhcHHHhhc
Q psy8321          89 CWVHNTVNRKLG-----KPIFDCALVDERWK  114 (124)
Q Consensus        89 ~~~HN~VN~rLg-----Kp~~~c~~~~~rw~  114 (124)
                      |++||.||+||+     .|.|++..+.-+-.
T Consensus       193 w~~HN~VN~rLag~~seDP~fpK~qwP~~~~  223 (261)
T 3llk_A          193 WSSHNRVNARLAGAPSEDPQFPKVQWPPREL  223 (261)
T ss_dssp             HHHHHHHHHHHTTCTTSCTTSCCCSSSCTTT
T ss_pred             HHhcCHHhhhcCCCCCCCCCCCccCCCCchh
Confidence            999999999994     56777655544333

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.88  E-value=7.5e-24  Score=177.31  Aligned_cols=86  Identities=20%  Similarity=0.319  Sum_probs=71.6

Q ss_pred             ccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy8321          19 LLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVNRK   98 (124)
Q Consensus        19 ~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~r   98 (124)
                      ..=+++|+||||||++||+     ++..+..|...+..||||.+|+.||.+++      ++|++++++|||++||.||+|
T Consensus       299 g~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~lWlw~~HN~VN~r  367 (470)
T 3qcp_A          299 GFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPVLQLWRAHNNVNAR  367 (470)
T ss_dssp             SHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHHHHHHHHhCHHHHh
Confidence            3556999999999999998     35566666666677899999999999876      789999999999999999999


Q ss_pred             hCC------CCCChhcHHHhhcc
Q psy8321          99 LGK------PIFDCALVDERWKD  115 (124)
Q Consensus        99 LgK------p~~~c~~~~~rw~~  115 (124)
                      |+|      |.|||..+.-...|
T Consensus       368 L~~~~~~~dp~fpk~~~P~~~~C  390 (470)
T 3qcp_A          368 LANVKDGADPLVPKRQFPTLEAC  390 (470)
T ss_dssp             HTTCCTTSCTTSCCCCSSCTTTC
T ss_pred             cCCCCCCCCCCCCccCCCCchhC
Confidence            997      77888766544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1oqca_	112	a.24.15.1 (A:) Augmenter of liver regeneration {Ra	3e-42
d1jr8a_	105	a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast	4e-35

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  132 bits (334), Expect = 3e-42
 Identities = 65/111 (58%), Positives = 79/111 (71%)

Query: 12  DCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLL 71
           DCP D++ LG  TW  LHT+AAYYPD PTP QQ+DM  F  + ++FYPC  CA D    +
Sbjct: 2   DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 61

Query: 72  RVRPPVTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDGWEDGSC 122
               P T++R   SQWLC +HN VNRKLGKP FDC+ VDERW+DGW+DGSC
Sbjct: 62  DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 112

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (287), Expect = 4e-35
 Identities = 38/100 (38%), Positives = 55/100 (55%)

Query: 17  KDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPP 76
           K  +G  +W   HT+ A +PD PTP ++  ++ F  L A+ YPC  C+  F  L+   P 
Sbjct: 5   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 64

Query: 77  VTTSRKDLSQWLCWVHNTVNRKLGKPIFDCALVDERWKDG 116
            T+SR   + W C +HN VN  L K I+DCA + E +  G
Sbjct: 65  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1oqca_	112	Augmenter of liver regeneration {Rat (Rattus norve	100.0
d1jr8a_	105	Thiol oxidase Erv2p {Baker's yeast (Saccharomyces	100.0

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-46  Score=261.02  Aligned_cols=112  Identities=58%  Similarity=1.201  Sum_probs=110.6

Q ss_pred             CCCCCCccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy8321          11 PDCPLDKDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCW   90 (124)
Q Consensus        11 ~~~p~~~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~   90 (124)
                      .+||+|+++|||++|++||++|++||++|+..++..++.||.+|..++||++|+.||.++++++|+.+.||++|+.|+|+
T Consensus         1 ~~~p~~~~~~Gp~~W~~lH~ia~~yp~~pt~~~~~~~~~fi~~l~~~lPC~~Cr~h~~~~l~~~~~~~~sr~~l~~wl~~   80 (112)
T d1oqca_           1 EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCR   80 (112)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHH
T ss_pred             CCCCCChHHccHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHhChhCccHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCCChhcHHHhhccCCCCCCC
Q psy8321          91 VHNTVNRKLGKPIFDCALVDERWKDGWEDGSC  122 (124)
Q Consensus        91 ~HN~VN~rLgKp~~~c~~~~~rw~~~~~~~~~  122 (124)
                      +||.||+|||||+++|+.+.++|++|++||+|
T Consensus        81 ~HN~VN~rlgKp~~~~~~~~~~Y~~~~~~~~~  112 (112)
T d1oqca_          81 LHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC  112 (112)
T ss_dssp             HHHHHHHHTTCCCCCGGGHHHHHTTCCTTSCC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHccCCCCCC
Confidence            99999999999999999999999999999999

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-42  Score=237.88  Aligned_cols=101  Identities=38%  Similarity=0.782  Sum_probs=99.3

Q ss_pred             ccccchhhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Q psy8321          17 KDLLGYQTWGLLHTMAAYYPDHPTPHQQRDMYNFFTLLAQFYPCATCARDFANLLRVRPPVTTSRKDLSQWLCWVHNTVN   96 (124)
Q Consensus        17 ~~~lG~a~W~llHtlAa~~p~~pt~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN   96 (124)
                      +++|||++|++|||+|++||++|+.+++..++.||.+|+.++||++|+.||.++++++|+.++||++|+.|+|++||.||
T Consensus         5 k~e~Gp~~W~~lHtia~~yp~~pt~~~k~~~~~f~~~l~~~lPC~~C~~h~~~~l~~~p~~~~sr~~l~~wl~~~HN~VN   84 (105)
T d1jr8a_           5 KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVN   84 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhCccccCCHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCChhcHHHhhccCC
Q psy8321          97 RKLGKPIFDCALVDERWKDGW  117 (124)
Q Consensus        97 ~rLgKp~~~c~~~~~rw~~~~  117 (124)
                      +|||||+|+|+.+.++|++||
T Consensus        85 ~~lgKp~~~~~~~~~~Y~~gc  105 (105)
T d1jr8a_          85 EYLKKDIYDCATILEDYDCGC  105 (105)
T ss_dssp             HHTTCCCCCCTTHHHHTCCCC
T ss_pred             HHcCCCCcCHHHHHHHHhcCC
Confidence            999999999999999999996