Psyllid ID: psy834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920------
Protein Sequence
MREVQTLESQLFPVIRLERVTMERRPSPEIHIPTVDSTSSVSSEEIRRHESNLNLLRRKTQQRRTIQHTESSTSSSNSEQNLRELTKATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQAGFISPMETQDENPPSEHSSEFPGVERCLRRIESSLLNVRDLLENRPSDTLSPAQSEVQAEFLSGESREELTFANESSETNSQGVPRAERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLFSKGEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQRSRSRSPLTRSTEQGSPNIRSTEQRASRTRSADQASQSVVTRSRSKLPSKKKD
Secondary Structure (PSIPRED)
cccHHHHccccccEEEEEEEccccccccccccccccccccccHHHHHHHccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrevqtlesqlfpvirlervtmerrpspeihiptvdstssvsseEIRRHESNLNLLRRKTQQRRTIqhtesstsssnseQNLRELTKATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTelegthqsydsgsdqagfispmetqdenppsehssefpgveRCLRRIESSLLNVRDLlenrpsdtlspaqSEVQAEflsgesreeltfanessetnsqgvprAERIMQRIESSLLQVRNLlelrpltpppqsdpesgtqgelspptpgpnpnsranpnpnpnsranpnlsrraqannsaqnplfskgehlcgtlnfqdctphpliIKIQQVFLYKkscisfsprresldsigsspskqhsvghttscniplrwqdrggvcrqhDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVsgwpkkkeNLVIVVQSnlfspqaltQSFGHAflditgaeqepylagmnfsctpqgrsyvgiqhlsgGERTLAALAMIFTIWKLVVRVQqlrpltpppqsdpesgtqgelspptpgpnphsrvnpnpnsranpnpnpnsranpnlsrraqannsaqnplpevssspntrsrvqsspttrsrvQSSLTIQsaeqgspntrsrvqssanirsaeqgspisrtrftKYTLQSTKSNLSRRAQAnnsaqnplpevssspntrsrvqsspttrsrvqsspttrsrvqsspttrsrvQSSLTIQsaeqgspntrsrvqssanirsaeqgspsirsavqrspntrsrVQSSLtthsaeqgspttrstvqgaprihsreqsspnthsaeqrspntrsrvqssattrsteqrsrsrspltrsteqgspnirsteqrasrtrsadqasqsvvtrsrsklpskkkd
Flexible Loop (DISEMBL)
mrevqtlesqlfpvirlervtmerrpspeihiptvdstssvsseeirrhesnlnllrrktqqrrtiqhtesstsssnseqNLRELTKATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQAGFISPMETQDENPPSEHSSEFPGVERCLRRIESSLLNVRDLLenrpsdtlspaqSEVQAEFLSGESREELtfanessetnsqgvpraERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLFSKGEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDsigsspskqhsvgHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKrrwilqkkfdkvkhtrrqKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTpppqsdpesgtQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSaqnplpevssspntrsrvqsspttrsrvqssltiqsaeqgspntrsrvqssanirsaeqgspisrtrftKYTLQSTKSNLSRRAQannsaqnplpevssspntrsrvqsspttrsrvqsspttrsrvqsspttrsrvqssltiqsaeqgspntrsrvqssanirsaeqgspsirsavqrspntrSRVQSsltthsaeqgspttrstvqgaprihsreqsspnthsaeqrspntrsrvqssattrsteqrsrsrspltrsteqgspnirsteqrasrtrsadqasqsvvtrsrsklpskkkd
Low Complexity Region (SEG)
MREVQTLESQLFPVIRLERVTMERRPSPEIHIPtvdstssvsseeIRRHESNLNLLRRKTQQRRTIQHtesstsssnseQNLRELTKATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQAGFISPMETQDENPPSEHSSEFPGVERCLRRIESSLLNVRDLLENRPSDTLSPAQSEVQAEFLSGESREELTFANESSETNSQGVPRAERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGpnpnsranpnpnpnsranpnlsrraQANNSAQNPLFSKGEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVnpnpnsranpnpnpnsranpnLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQssattrsteqrsrsrspltrstEQGSPNIRSTEQRASRTRSADQASQSVVTRSRSKLPSKKKD
Disordered region (IsUnstruct)
***********FPVIRL**********************************************************************ATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTEL****************************************************************************************************************************************************************************************GEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISF***********************TSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQL****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****T*ESQLFPVIRLERVTMERRPSPEIHIPTV***************************************************KATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTELE************************************VERCLRRIESSLLNVRDLLENR********************************************IMQRIESSLLQVRNLLELR************************************************************SKGEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFS**********************TSCNIPLRWQDRGGVCRQHDVKMQLQL*K**QRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGH****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MREVQTLESQLFPVIRLERVTMERRPSPEIHIPT**************HESNLNLLRRK**********************LRELTKATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQAGFISPM****************GVERCLRRIESSLLNVRDLLENR****************************************RAERIMQRIESSLLQVRNLLELRPLT**************************RANPNPNPNSRANPNLSRRAQANNSAQNPLFSKGEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSP*********************TSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLT***************************VNPNPNSRANPNPNPNSRANPNLSRR******************************************************************SPISRTRFTKYTLQS**********************************************************************************************************************************************************************************************************************************
Disordered Region (DISPRO)
**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREVQTLESQLFPVIRLERVTMERRPSPEIHIPTVDSTSSVSSEEIRRHESNLNLLRRKTQQRRTIQHTESSTSSSNSEQNLRELTKATTYIQNIESLLSQASDLIERRQLEAHRILYVLLKFRTELEGTHQSYDSGSDQAGFISPMETQDENPPSEHSSEFPGVERCLRRIESSLLNVRDLLENRPSDTLSPAQSEVQAEFLSGESREELTFANESSETNSQGVPRAERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLFSKGEHLCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDSIGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQxxxxxxxxxxxxxxxxxxxxxLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQRSRSRSPLTRSTEQGSPNIRSTEQRASRTRSADQASQSVVTRSRSKLPSKKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	926	2.2.26 [Sep-21-2011]
Q28298	1534	Ribosome-binding protein	yes	N/A	0.301	0.181	0.168	8e-08

>sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 OS=Canis familiaris GN=RRBP1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/297 (16%), Positives = 118/297 (39%), Gaps = 18/297 (6%)

Query: 578 QGELSPPTPGPNPHSRVNPNPNSRAN--PNPNPNSRANPNLSRRAQANNSAQNPLPEVSS 635
           QG+ +  TP     +   PN   + +  PN    S   PN  ++ +    AQN   +V  
Sbjct: 348 QGKKAEGTPNQGKKAEGAPNQGKKTDGAPNQGKKSEGAPNQGKKVEG---AQNQGKKVEG 404

Query: 636 SPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTK 695
             N   + + +     + + + +    E+G+PN   + + S N     QG  +   +   
Sbjct: 405 VQNQGKKAEGAQNQGKKAEGTSSQGRKEEGTPNLGKKAEGSPN-----QGKKVEVVQNQS 459

Query: 696 YTLQSTKSNLSRRAQAN-------NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTT 748
             ++    N  ++A+ +         A N   +V  + N   + + +P    +V+ +   
Sbjct: 460 KKVEGA-PNQGKKAEGSQNQGKKTEGASNQGKKVDGAQNQGKKAEGAPNQGKKVEGAQNQ 518

Query: 749 RSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNT 808
             + + +P    + + +       +G+PN   + + + N     +G+P+     + +PN 
Sbjct: 519 GKKAEGTPNQGKKAEGAQNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQ 578

Query: 809 RSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSS 865
             + +++       +G+P      +GAP    + +++PN     + +PN   + + +
Sbjct: 579 GKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGA 635

Acts as a ribosome receptor and mediates interaction between the ribosome and the endoplasmic reticulum membrane.
Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	926
47125144	1196	LOC431817 protein, partial [Xenopus laev	0.281	0.218	0.302	6e-13
260783880	131	hypothetical protein BRAFLDRAFT_161092 [	0.141	1.0	0.396	7e-11
111307761	2080	Mki67 protein [Xenopus laevis]	0.264	0.117	0.307	2e-09
428164376	1241	sister chromatid cohesin complex subunit	0.103	0.077	0.314	4e-08
401886605	1202	cohesin complex subunit and chromosome s	0.052	0.040	0.54	4e-07
406698558	1162	hypothetical protein A1Q2_03856 [Trichos	0.052	0.042	0.54	4e-07
50978924	1534	ribosome-binding protein 1 [Canis lupus	0.301	0.181	0.168	5e-06
428214389	346	hypothetical protein Oscil6304_4084 [Osc	0.232	0.621	0.259	1e-05
260782639	115	hypothetical protein BRAFLDRAFT_252785 [	0.120	0.973	0.359	3e-05
123437833	642	hypothetical protein [Trichomonas vagina	0.117	0.169	0.229	4e-05

>gi|47125144|gb|AAH70605.1| LOC431817 protein, partial [Xenopus laevis]

 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 635 SSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFT 694
           +SP  RS V++SP  RS  ++S   +S  + SP  RS  ++S   RS  + SP  R+   
Sbjct: 479 ASPAKRSPVKASPAKRSPAKASPAKRSPAKVSPAKRSPAKASPAKRSPAKASPAKRS--- 535

Query: 695 KYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQS 754
                  K++ ++R+ A            +SP  RS  ++SP  RS  ++SP  RS  ++
Sbjct: 536 -----PAKASPAKRSPAK-----------ASPAKRSPAKASPAKRSPAKASPAKRSPAKA 579

Query: 755 SPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQS 814
           SP  RS  ++S   +S  + SP  RS  ++S   RS  + SP+ RS  + SP  RS  ++
Sbjct: 580 SPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAKA 639

Query: 815 SLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQR 874
           S    S  + SP  +S  +G+P   +  + SP   S  +RSP   S  + +   RS  + 
Sbjct: 640 SPAKRSPAKASPAKKSPAKGSPAKVTPSKRSPAKASPAKRSPAKVSPAKVTPAKRSPAKG 699

Query: 875 SRSR-SPLTRSTEQGSPNIRSTEQRASRTRSADQASQSVVT 914
             ++ +P  RS  + SP  RS  +     RS  + S + VT
Sbjct: 700 FSAKVTPAKRSPAKASPAKRSPAKVTPAKRSPAKGSPAKVT 740

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260783880|ref|XP_002586999.1| hypothetical protein BRAFLDRAFT_161092 [Branchiostoma floridae] gi|229272132|gb|EEN43010.1| hypothetical protein BRAFLDRAFT_161092 [Branchiostoma floridae]

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 63/131 (48%)

Query: 726 PNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSS 785
           P   S  Q SP   S  Q SP   S  Q SP   S  Q S  + S+ Q SP   S  Q S
Sbjct: 1   PLVHSSTQYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYS 60

Query: 786 ANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSS 845
             + S+ Q SP + S+ Q SP   S  Q S   HS+ Q SP   S+ Q +P +HS  Q S
Sbjct: 61  PLVHSSTQYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYS 120

Query: 846 PNTHSAEQRSP 856
           P  HS+ Q SP
Sbjct: 121 PLVHSSTQYSP 131

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|111307761|gb|AAI21193.1| Mki67 protein [Xenopus laevis]

 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 636 SPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRT--RF 693
           +P  RS  ++SP  RS  ++S   +S  + SP  RS  ++S   RS  + SP  R+  + 
Sbjct: 450 TPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAKVSPAKRSPAKV 509

Query: 694 TKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQ 753
           +       K + ++R+ A  S     P    SP  RS  + SP  RS  + SP  RS  +
Sbjct: 510 SPAKRSPAKVSPAKRSPAKVSPAKRSP-AKVSPAKRSPAKVSPAKRSPAKVSPAKRSPAK 568

Query: 754 SSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQ 813
            SP  RS  + S   +S  + SP  RS  ++S   RS  + SP+ RS  + SP  RS  +
Sbjct: 569 VSPAKRSPAKVSPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAKASPAKRSPAK 628

Query: 814 SSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQ 873
           +S    S  + +P  +S  +G+P      + +P+  S  + SP+ RS  ++S + RS  +
Sbjct: 629 ASPAKRSPAKATPAKKSPAKGSP-----AKVTPSKRSPAKASPSKRSPAKASPSKRSPAK 683

Query: 874 RSRSRSPLTRSTEQGSP 890
                SP  RS  +GSP
Sbjct: 684 ----ASPAKRSPAKGSP 696

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|428164376|gb|EKX33404.1| sister chromatid cohesin complex subunit, structural maintenance of chromosome 1, SMC1 [Guillardia theta CCMP2712]

 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 31/127 (24%)

Query: 427  LQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVV 486
            L K+F+ VK  R + F   +D V   ID  YK       C                    
Sbjct: 1063 LTKQFEDVKQKRCELFNKCFDHVKGCIDEIYK----ELTC-------------------- 1098

Query: 487  QSNLFSPQALTQSFGH-AFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAA 545
                  P  + QS G  A+L +   E EPY+ G+ +   P G+ ++ + HLSGGE+T+AA
Sbjct: 1099 -----DPTKVEQSVGGSAYLTLNNQE-EPYMDGIKYDTIPPGKRFMDMTHLSGGEKTVAA 1152

Query: 546  LAMIFTI 552
            LA++F I
Sbjct: 1153 LALLFAI 1159

Source: Guillardia theta CCMP2712

Species: Guillardia theta

Genus: Guillardia

Family: Geminigeraceae

Order: Pyrenomonadales

Class: Cryptophyta

Superkingdom: Eukaryota

>gi|401886605|gb|EJT50632.1| cohesin complex subunit and chromosome segregation protein [Trichosporon asahii var. asahii CBS 2479]

 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)

Query: 501  GHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIF 550
            G AFL +  AE EPYLAG+ ++  P G+ +V I+ LSGGE+T+AALA++F
Sbjct: 1079 GMAFLSLEDAE-EPYLAGVKYNTMPPGKRFVEIEQLSGGEKTMAALALLF 1127

Source: Trichosporon asahii var. asahii CBS 2479

Species: Trichosporon asahii

Genus: Trichosporon

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|406698558|gb|EKD01793.1| hypothetical protein A1Q2_03856 [Trichosporon asahii var. asahii CBS 8904]

 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)

Query: 501  GHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIF 550
            G AFL +  AE EPYLAG+ ++  P G+ +V I+ LSGGE+T+AALA++F
Sbjct: 1039 GMAFLSLEDAE-EPYLAGVKYNTMPPGKRFVEIEQLSGGEKTMAALALLF 1087

Source: Trichosporon asahii var. asahii CBS 8904

Species: Trichosporon asahii

Genus: Trichosporon

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|50978924|ref|NP_001003179.1| ribosome-binding protein 1 [Canis lupus familiaris] gi|23822071|sp|Q28298.1|RRBP1_CANFA RecName: Full=Ribosome-binding protein 1; AltName: Full=180 kDa ribosome receptor; Short=RRp gi|984114|emb|CAA60676.1| ribosome receptor [Canis lupus familiaris]

 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/297 (16%), Positives = 118/297 (39%), Gaps = 18/297 (6%)

Query: 578 QGELSPPTPGPNPHSRVNPNPNSRAN--PNPNPNSRANPNLSRRAQANNSAQNPLPEVSS 635
           QG+ +  TP     +   PN   + +  PN    S   PN  ++ +    AQN   +V  
Sbjct: 348 QGKKAEGTPNQGKKAEGAPNQGKKTDGAPNQGKKSEGAPNQGKKVEG---AQNQGKKVEG 404

Query: 636 SPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTK 695
             N   + + +     + + + +    E+G+PN   + + S N     QG  +   +   
Sbjct: 405 VQNQGKKAEGAQNQGKKAEGTSSQGRKEEGTPNLGKKAEGSPN-----QGKKVEVVQNQS 459

Query: 696 YTLQSTKSNLSRRAQAN-------NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTT 748
             ++    N  ++A+ +         A N   +V  + N   + + +P    +V+ +   
Sbjct: 460 KKVEGA-PNQGKKAEGSQNQGKKTEGASNQGKKVDGAQNQGKKAEGAPNQGKKVEGAQNQ 518

Query: 749 RSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNT 808
             + + +P    + + +       +G+PN   + + + N     +G+P+     + +PN 
Sbjct: 519 GKKAEGTPNQGKKAEGAQNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQ 578

Query: 809 RSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSS 865
             + +++       +G+P      +GAP    + +++PN     + +PN   + + +
Sbjct: 579 GKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGA 635

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|428214389|ref|YP_007087533.1| hypothetical protein Oscil6304_4084 [Oscillatoria acuminata PCC 6304] gi|428002770|gb|AFY83613.1| hypothetical protein Oscil6304_4084 [Oscillatoria acuminata PCC 6304]

 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 80/220 (36%), Gaps = 5/220 (2%)

Query: 664 QGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVS 723
           QG P T+ +V +   ++    G+PI +       +Q   +    +    +   NP  +  
Sbjct: 123 QGVP-TQQQVPAGTPLQQVPAGTPIQQQVPAGTPIQQVPAGTPTQTTPGDFQVNPGVQQQ 181

Query: 724 SSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQ 783
            +P     VQ  PT    VQ  PT    VQ  PT    VQ   TI    Q  P     VQ
Sbjct: 182 VNPG----VQQQPTINPGVQQQPTINPGVQQQPTINPGVQQQPTINPGVQQQPTINPGVQ 237

Query: 784 SSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQ 843
               I    Q  P+I   VQ+ P     VQ   T +   Q  PT    VQ  P I+   Q
Sbjct: 238 QQPTINPGVQQQPTINPGVQQQPTINPGVQQQPTINPGVQQQPTINPGVQQQPTINPGVQ 297

Query: 844 SSPNTHSAEQRSPNTRSRVQSSATTRSTEQRSRSRSPLTR 883
             P  +   Q+ P     VQ        + +  + +P  R
Sbjct: 298 QQPTINPGVQQQPTINPGVQQQQIGPGVQPQQPTINPGIR 337

Source: Oscillatoria acuminata PCC 6304

Species: Oscillatoria acuminata

Genus: Oscillatoria

Order: Oscillatoriales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|260782639|ref|XP_002586392.1| hypothetical protein BRAFLDRAFT_252785 [Branchiostoma floridae] gi|229271498|gb|EEN42403.1| hypothetical protein BRAFLDRAFT_252785 [Branchiostoma floridae]

 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 745 SPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSP--NTRSRVQSSANIRSAEQGSPSIRSAV 802
           SP   S  Q SP      Q S  + S+ Q  P  ++ +  Q S  + S+ Q SP + S+ 
Sbjct: 1   SPLVHSSTQYSPLVHISTQYSPLVHSSTQYRPLVHSSTHTQYSPLVHSSTQYSPLVHSST 60

Query: 803 QRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSP 856
           Q SP   S  Q S   HS+ Q SP   S+ Q  P +HS  Q  P  HS+ Q SP
Sbjct: 61  QYSPLVHSSTQYSPLVHSSTQYSPLVHSSTQYGPLVHSSTQYGPLVHSSTQYSP 114

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|123437833|ref|XP_001309708.1| hypothetical protein [Trichomonas vaginalis G3] gi|121891446|gb|EAX96778.1| conserved hypothetical protein [Trichomonas vaginalis G3]

 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 65/161 (40%)

Query: 713 NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAE 772
           N +Q     ++  P   ++ QS P   ++ QS P   ++ QS P   ++ QS    ++  
Sbjct: 66  NQSQKMKTNINQKPKEENKYQSKPKDENKHQSKPKDENKHQSKPKDENKYQSKPKDENKH 125

Query: 773 QGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTV 832
           Q  P   ++ QS     +  Q  P   +  Q  P   ++ QS     +  Q  P   +  
Sbjct: 126 QSKPKDENKYQSKPKDENKYQSKPKDENKHQSKPKDENKHQSKPKDENKYQSKPKDENKY 185

Query: 833 QGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRSTEQ 873
           Q  P+  ++ QS P   +  Q  P   ++ QS     S +Q
Sbjct: 186 QSKPKDENKHQSKPKDENKHQSKPKDENKHQSKPKEDSRDQ 226

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	926
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.330	0.818	0.225	7.8e-14
FB|FBgn0036203	1514	Muc68D "Mucin 68D" [Drosophila	0.314	0.192	0.241	1.9e-12
POMBASE|SPBC215.13	534	SPBC215.13 "sequence orphan" [	0.311	0.539	0.244	7.1e-11
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.314	0.378	0.241	7.9e-11
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.314	0.378	0.241	7.9e-11
UNIPROTKB|F1MI03	2724	SRRM2 "Uncharacterized protein	0.321	0.109	0.249	9.3e-11
ZFIN|ZDB-GENE-070112-902	669	zgc:158863 "zgc:158863" [Danio	0.226	0.313	0.263	3.6e-10
POMBASE|SPAPB15E9.01c	1036	SPAPB15E9.01c "sequence orphan	0.330	0.295	0.231	1.1e-09
MGI|MGI:1923206	2703	Srrm2 "serine/arginine repetit	0.388	0.133	0.236	6.3e-09
WB|WBGene00019435	2232	K06A9.1 [Caenorhabditis elegan	0.365	0.151	0.247	3.3e-09

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 69/306 (22%), Positives = 134/306 (43%)

Query:   617 SRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSS 676
             S  + +++S+ +     SSS ++ S   SS ++ S   SS +  S+   S ++ S   SS
Sbjct:    66 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 125

Query:   677 ANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP 736
             ++  S+   S  S +  +  +  S+ S+ S  + +++S+ +     SSS ++ S   SS 
Sbjct:   126 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185

Query:   737 TTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSP 796
             ++ S   SS ++ S   SS ++ S   SS +  S+   S ++ S   SS++  S+   S 
Sbjct:   186 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 245

Query:   797 SIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSP 856
             S  S+   S ++ S   SS ++ S+   S ++ S+   +    S   SS ++ S+   S 
Sbjct:   246 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 305

Query:   857 NTRSRVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTEQRASRTRSADQASQSVVTRS 916
             ++ S                            S +  S+   +S + S+  +S S  + S
Sbjct:   306 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 365

Query:   917 RSKLPS 922
              S   S
Sbjct:   366 SSSSSS 371

GO:0005576 "extracellular region" evidence=IEA

FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 77/319 (24%), Positives = 144/319 (45%)

Query:   617 SRRAQANNSAQNPLP-EVSSSPNTRSRVQSSP--TTRSRVQSS---LTIQSAEQG--SPN 668
             S   ++++S + PL  E S+  N  S  +SS   TT+    SS   L+ +S+ +   S +
Sbjct:   772 STTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEANESSS 831

Query:   669 TRSRVQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRA---QANNSAQNPLPEVSSS 725
             T S   S+    S+    P+S    T+ T +S+ +  S+ +   ++++S + PL   SS+
Sbjct:   832 TESSQDSTTQESSSSTEDPLSTESSTEATYESSSTESSQDSTTQESSSSTEGPLSTESST 891

Query:   726 P--NTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQ 783
                N  S  +SS  + ++ +SS +T S + + P+T +  +SS T  S +  +  + S  +
Sbjct:   892 EGSNESSSTESSQDSTTQ-ESSSSTESPLSTEPSTEAN-ESSSTESSQDSTTQESSSSTE 949

Query:   784 SSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQ 843
                +  S+ + + S  S+ + S ++ ++  SS T     +G  +T S+ +G+    S E 
Sbjct:   950 GPLSTESSTEANES--SSTESSQDSTTQESSSST-----EGPLSTESSTEGSNESSSTES 1002

Query:   844 SSPNTHSAEQRSPNTRSRVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIR--STEQ--RA 899
             S  +T   ++ S +T S +                       E  S      STE    A
Sbjct:  1003 SQDST--TQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEA 1060

Query:   900 SRTRSADQASQSVVTRSRS 918
             S   S+ ++SQ   T+  S
Sbjct:  1061 SNESSSTESSQDSTTQESS 1079

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 186 (70.5 bits), Expect = 7.1e-11, P = 7.1e-11
 Identities = 72/295 (24%), Positives = 130/295 (44%)

Query:   623 NNSAQNPLPEVSS-SPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRS 681
             ++S  +  P VSS S +T S    + T+ S + SS  + S+   S ++ S + SS+ + +
Sbjct:   179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSS-LST 237

Query:   682 AEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR 741
             +   S  S +  T  +L S+ S  S  A +++S+ + +   SSS ++ +   S+ ++ S 
Sbjct:   238 SSIPSTSSSSSSTSSSLSSSSS--SSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295

Query:   742 VQSSPT-TRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQG-SPSIR 799
               SSPT T S + SS ++ S   S+L+  S    S  + S   SS+ I S+    S S  
Sbjct:   296 SSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSF 355

Query:   800 SAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGA-PRIHSREQSSPNTHSAEQRSPNT 858
             S+   S  + S   S++++ S+   S  T S+   + P   S   SS ++H +   S ++
Sbjct:   356 SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS 415

Query:   859 RSRVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTEQRASRTRSADQASQSVV 913
              + V                          S  I +    +  T S+    +S V
Sbjct:   416 SAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTV 470

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 188 (71.2 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 72/298 (24%), Positives = 119/298 (39%)

Query:   623 NNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSA 682
             +NS+ N     SSSP   S   S+PTT    Q + T    +  S  T  + Q S   + +
Sbjct:    74 SNSSPNSAQTFSSSPENSSSRMSTPTTSISTQPASTTSIQQSQSLQTSQQSQQSQQSQQS 133

Query:   683 EQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV 742
             +Q      ++    T Q+  S +S    +  S  +    VS++  + S   SS ++ +  
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTSSSSSSSTPS 193

Query:   743 QSSPTTRSRVQSSP--TTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRS 800
              S  TT S   SSP  TT S   ++ +  + E  S  T S   +S++I S +  + S  +
Sbjct:   194 TSDVTTSSSASSSPSSTTSSSSSTAFSSSTTETSSSATSSSSTTSSSISSTQSNTSSSSN 253

Query:   801 AVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRS 860
                 S  T S   SS ++ ++   SP+  ST   +    S   SS  T S    S ++ S
Sbjct:   254 TSFSSSTTAS---SSFSSSTSSSFSPSPSSTTSSSSI--SSTSSSFTTSSDTSASSSSSS 308

Query:   861 RVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTEQRASRTRSADQASQSVVTRSRS 918
              V                          + +I S+ + +S + SA  +S    T + S
Sbjct:   309 SVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDSSTSTSS 366

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 188 (71.2 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 72/298 (24%), Positives = 119/298 (39%)

Query:   623 NNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSA 682
             +NS+ N     SSSP   S   S+PTT    Q + T    +  S  T  + Q S   + +
Sbjct:    74 SNSSPNSAQTFSSSPENSSSRMSTPTTSISTQPASTTSIQQSQSLQTSQQSQQSQQSQQS 133

Query:   683 EQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV 742
             +Q      ++    T Q+  S +S    +  S  +    VS++  + S   SS ++ +  
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTSSSSSSSTPS 193

Query:   743 QSSPTTRSRVQSSP--TTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRS 800
              S  TT S   SSP  TT S   ++ +  + E  S  T S   +S++I S +  + S  +
Sbjct:   194 TSDVTTSSSASSSPSSTTSSSSSTAFSSSTTETSSSATSSSSTTSSSISSTQSNTSSSSN 253

Query:   801 AVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRS 860
                 S  T S   SS ++ ++   SP+  ST   +    S   SS  T S    S ++ S
Sbjct:   254 TSFSSSTTAS---SSFSSSTSSSFSPSPSSTTSSSSI--SSTSSSFTTSSDTSASSSSSS 308

Query:   861 RVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTEQRASRTRSADQASQSVVTRSRS 918
              V                          + +I S+ + +S + SA  +S    T + S
Sbjct:   309 SVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDSSTSTSS 366

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MI03 SRRM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
 Identities = 79/317 (24%), Positives = 133/317 (41%)

Query:   619 RAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQ---S 675
             R + + S  +P P   S  + R R  SSP T++  +   +     +G   +RSR +   +
Sbjct:  1689 RRRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKT 1748

Query:   676 SANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSS---SPNTRSRV 732
              A  R    GS  S +R  + +   ++    RR  +   +++P  + SS   S   R R 
Sbjct:  1749 RATRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRS 1808

Query:   733 QSSPTTRSRVQS----SPTTRSRVQSSPTT--RSRVQSSLTIQ--SAEQGSPNTRSRVQS 784
             ++ PT+R R +S    +P  RSR ++SP T  RSR ++ L  +  S  + SP +R R +S
Sbjct:  1809 RTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLVSRRRSRSRTSPVSRRRSRS 1868

Query:   785 SANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQS 844
               ++    + S S  S V R   +RSR    +T   +   +PT R +    P + +R +S
Sbjct:  1869 RTSV--TRRRSRSRASPVSRR-RSRSRTPP-VTRRRSRSRTPTRRRSRSRTPPV-TRRRS 1923

Query:   845 SPNTHSAEQRSPNTRSRVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTEQRASRTRS 904
                T    +R   +R+                                RS     +R RS
Sbjct:  1924 RSRTPPVTRRRSRSRTSPIARRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRS 1983

Query:   905 ADQASQSVVTRSRSKLP 921
               +   ++  RSRS+ P
Sbjct:  1984 RSRTPPAIRRRSRSRTP 2000

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

ZFIN|ZDB-GENE-070112-902 zgc:158863 "zgc:158863" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 59/224 (26%), Positives = 97/224 (43%)

Query:   636 SPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTK 695
             +P T  R Q  PTT  R Q + T   A+Q +P     +Q +       Q +P      T 
Sbjct:   240 TPTTSHRKQGKPTTLYRTQETPTASQAKQDTPTISLTIQDTPTTTQTNQDTPS-----TS 294

Query:   696 YTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSS 755
               +Q T +  S+R Q   +    L ++S+   T  ++Q +PT   R Q +PTT   +Q +
Sbjct:   295 CKIQDTPT-ASQRKQDTPTTSQKL-DMST---TSCKIQDTPTASQRKQDTPTTSCIIQDT 349

Query:   756 PTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSS 815
             PTT   VQ + T  S +Q    T  ++Q +    S  + +P     +Q +P T    + +
Sbjct:   350 PTTSQTVQDTPTT-SQKQDMSTTSCKIQDTPTA-SQRKDTPPTSCIIQDTPTTSQTKRLN 407

Query:   816 LTTHSAE-QGSPT-TRSTVQGAPRIHSREQSSPNTHSAEQRSPN 857
               T S + Q +PT T++  +  P     + S       E   P+
Sbjct:   408 TPTASRKIQDTPTYTQTLYEDTPSPPVNQPSQEEESEEELSGPD 451

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAPB15E9.01c SPAPB15E9.01c "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 179 (68.1 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 73/316 (23%), Positives = 121/316 (38%)

Query:   617 SRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSS 676
             S    +  SA      ++SS  T S + SS TT S + SS    S+   S  T S + SS
Sbjct:    93 SSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASS 152

Query:   677 ANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP 736
             +   S+   S  + T     T  +T S+LS  A +N++  + L   S +  T +   SS 
Sbjct:   153 STTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSS 212

Query:   737 TTRSRVQSSPTTRSRVQSS--PTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQG 794
              + +   +S T+ S   SS   TT +   SS    +    +P T S   ++A   SA   
Sbjct:   213 LSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSS 272

Query:   795 SPSIRSAV---QRSPNTRSRVQSSLTTHSAEQGSPTTR---STVQGAPRIHSREQSSPNT 848
             S    ++      +P++     ++ TT ++   +P T    +T   A        SS N+
Sbjct:   273 SAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANS 332

Query:   849 HSAEQRSPNTRSRVQXXXXXXXXXXXXXXXXXXXXXXEQGSP--NIRSTEQRASRTRSAD 906
              +A   S    S V                          +P  ++ ST   ++ +    
Sbjct:   333 TTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLT 392

Query:   907 QASQSVVTRSRSKLPS 922
              A+ +  T   S  PS
Sbjct:   393 SANSTTSTSVSSTAPS 408

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

MGI|MGI:1923206 Srrm2 "serine/arginine repetitive matrix 2" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
 Identities = 91/384 (23%), Positives = 153/384 (39%)

Query:   559 VQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVXXXXXXXXXXXXXXXXXXXXXLSR 618
             V   RPL   P S        E SP T G +P                          SR
Sbjct:   373 VDSPRPLAAIPSSQEPVNPSSEASP-TRGCSPPKSPEKPPQSTSSESCPPSPQPTKG-SR 430

Query:   619 RAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRS-RVQSSA 677
              A ++  +  P P    +P +R  + SSPT+++R         +   +P+ R+ R +S A
Sbjct:   431 HASSSPESLKPTP----APGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPA 486

Query:   678 NIRSAEQG-SPI----SRTRFTKY--TLQSTKSNLSRRAQANNSAQNPL-PEVSSSPNTR 729
               R   +  +P     SR+R  ++  +  + +   SR  Q    +++P  P  S S NT+
Sbjct:   487 TKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQ 546

Query:   730 SRVQSSPTTRSRVQS-SPTTRSRVQS-SPTTRSRVQSSLTIQSAEQG-SP-NTRSRVQSS 785
              R +S    R R  S SP TR R +S +P  R R +S    +   +  +P   RSR ++ 
Sbjct:   547 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTP 606

Query:   786 ANIRSAEQGSPSIRSAVQRSP-NTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQS 844
             A    +   +P+ R +  RSP   RSR +S        +     R + +   R  +R   
Sbjct:   607 ARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGR 666

Query:   845 SPNTHSAEQRSPNTRSRVQXXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTEQRASRTRS 904
             S  + +  +RS  +RSR                         +G  + R+ ++R     S
Sbjct:   667 S-RSRTPARRSARSRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSS 725

Query:   905 ADQASQSVVTRSRSKL---PSKKK 925
             +++ ++S  ++ RS+    P  KK
Sbjct:   726 SERKNKSRTSQRRSRSNSSPEMKK 749

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0070742 "C2H2 zinc finger domain binding" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

WB|WBGene00019435 K06A9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
 Identities = 89/360 (24%), Positives = 138/360 (38%)

Query:   567 PPPQSDPESGTQGELSPPTPGPNPHSRVXXXXXXXXXXXXXXXXXXXXXLSRRAQANNSA 626
             P P S   SG Q  L+ P+P P+  +                        S+ +   +S 
Sbjct:   703 PSPSSTQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQ 762

Query:   627 QNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGS 686
              +  P  S++    +   S+ T  S V +S  I ++ Q S +T S   S+    S   GS
Sbjct:   763 GSTSPAASTTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSP-GSTVTRPSTVSGS 821

Query:   687 PISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSP 746
               S +  T   + ST+++ S  + A++S   P P  S +PN  +   SS  T+S   S  
Sbjct:   822 TSSGSTVT---VGSTEASTSGSSVASSS---PAPSTSQNPNPSTSSGSSMITQSPYPSQS 875

Query:   747 TTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSP 806
             T  S V+SS TT S      T+ S    SP+  + + S+    S    + S     Q S 
Sbjct:   876 T--SPVESS-TTPSPGSPGTTLTSTSP-SPSQSTTIGSTQGSTSPGISTTSEEMTSQGST 931

Query:   807 NTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSRE-QSSPNTHSAEQRSPNTRS--RVQ 863
              T     S++T  S    S ++ STV     + S E  SSP   +++  +P+T S   + 
Sbjct:   932 QTPGSTGSTVTQPSTVSDSTSSGSTVT----VGSTEGSSSPIPSTSQNTNPSTSSGSSMS 987

Query:   864 XXXXXXXXXXXXXXXXXXXXXXEQGSPNIRSTE----QRASRTRSADQASQSVVTRSRSK 919
                                     GSP    T        S T  + Q S S V  + S+
Sbjct:   988 TQTPQSSQSTSPVESSTSGATSSSGSPGTTLTSISPSPSPSSTIGSSQGSTSPVVSTISQ 1047

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	926
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
COG5422	1175	COG5422, ROM1, RhoGEF, Guanine nucleotide exchange	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	7e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-05
COG5422	1175	COG5422, ROM1, RhoGEF, Guanine nucleotide exchange	2e-04
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 58/372 (15%), Positives = 101/372 (27%), Gaps = 41/372 (11%)

Query: 564 PLTPPPQSDPESGTQGELSPPTPGPNPHSRVN-----------PNPNSRANPNPNPNSRA 612
           P T  P ++  S     LS   P                    P     A+P P+P    
Sbjct: 75  PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDL 134

Query: 613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSR 672
           +  L            P     ++  + + V S   +    Q++L + S E+ +    S 
Sbjct: 135 SEMLRPVGS---PGPPPAASPPAAGASPAAVASDAASSR--QAALPLSSPEETARAPSSP 189

Query: 673 VQSSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRV 732
                        SP    R                   ++         + +P   +  
Sbjct: 190 PAEPPPSTPPAAASPRPPRR-------------------SSPISASASSPAPAPGRSAAD 230

Query: 733 QSSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAE 792
            +  ++     S  +       +     R           + S       +      ++ 
Sbjct: 231 DAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPG---PASS 287

Query: 793 QGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAE 852
             SP  RS      +  S    S    S+   S    S+   +    S   ++ +   + 
Sbjct: 288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSP 347

Query: 853 QRSPNTRSRVQSSATTRSTEQRSRS-RSPLTRSTEQGSPNIRSTE-QRASRTRSADQASQ 910
            RSP + SR    A   S  +R R  R+P + +   G P  R      A R R  D   +
Sbjct: 348 SRSP-SPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406

Query: 911 SVVTRSRSKLPS 922
               R R     
Sbjct: 407 FPAGRPRPSPLD 418

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 54/356 (15%), Positives = 98/356 (27%), Gaps = 28/356 (7%)

Query: 568 PPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQ 627
           PP             P +P P+P   ++       +P P P +      +  A   + A 
Sbjct: 108 PPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAA 167

Query: 628 NPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSP 687
           +         +     ++  +  +    S         SP    R    +   S+   +P
Sbjct: 168 SSRQAALPLSSPEETARAPSSPPAEPPPS---TPPAAASPRPPRRSSPISASASSPAPAP 224

Query: 688 ISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPT 747
                          S+ S  ++++     P  E          + +     S      +
Sbjct: 225 GRSAADDA----GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280

Query: 748 TRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPN 807
                 SS + R R  S          +P++     SS++ R +   S S  S   R   
Sbjct: 281 RPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAA 340

Query: 808 TRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSAT 867
                           G   +RS     P         P   S+ ++ P       S A 
Sbjct: 341 VSP-------------GPSPSRSPSPSRP-------PPPADPSSPRKRPRPSRAPSSPAA 380

Query: 868 TRSTEQRSRSR-SPLTRSTEQGSPNIRSTEQRASRTRSADQASQSVVTRSRSKLPS 922
           +     R R+R +   R+  + +       +       A  AS +   R     PS
Sbjct: 381 SAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPS 436

Length = 1352

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 45/161 (27%)

Query: 395  QLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNID 454
            +  + ++R   L  +    E   + L        +  +++   +R++F+  +D +N+N  
Sbjct: 971  EYEEVEERYEELKSQREDLEEAKEKL-------LEVIEELDKEKRERFKETFDKINENFS 1023

Query: 455  ATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEP 514
              +K        ++ L                                          +P
Sbjct: 1024 EIFKELFGGGTAELELTEPD--------------------------------------DP 1045

Query: 515  YLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL 555
              AG+  S  P G+    +  LSGGE++L ALA++F I K 
Sbjct: 1046 LTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKY 1086

Length = 1163

>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

 Score = 52.2 bits (125), Expect = 1e-06
 Identities = 51/261 (19%), Positives = 87/261 (33%), Gaps = 34/261 (13%)

Query: 568 PPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN---------PNPNSRANPNLSR 618
             Q  P    Q +L+P +         N   NS +  +            +  ++P L +
Sbjct: 28  SKQLLPPRRLQRKLNPISIRNGA---DNDIINSESKESFGKYALGHQIFSSFSSSPKLFQ 84

Query: 619 RAQA--NNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSS 676
           R  +    +        +SS N+    Q SP + S   +  + QS +   P   S VQ  
Sbjct: 85  RRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQKR 144

Query: 677 ANI-----RSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSR 731
            N       +     PI  T        +  +   +   +  S    LP    SP+ R +
Sbjct: 145 KNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLP----SPHFRQK 200

Query: 732 VQSSPTTRSRVQSSPTTRSR-VQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRS 790
             SS T  S   S P+ R     SS +  S   SS  +        +  S + S+     
Sbjct: 201 FSSSDT--SNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNI---- 254

Query: 791 AEQGSPSIRSAVQRSPNTRSR 811
               +PS  ++   S +++  
Sbjct: 255 ----TPSSSNSEAMSTSSKRP 271

Length = 1175

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.9 bits (124), Expect = 2e-06
 Identities = 61/364 (16%), Positives = 102/364 (28%), Gaps = 16/364 (4%)

Query: 557  VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNL 616
            V  +  RP  PP  + P      +      GP P S + P+ ++   P P+P+  AN   
Sbjct: 2582 VTSRARRPDAPPQSARPR--APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD 2639

Query: 617  SRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSS 676
                      + P  + +    +R R       R+   SS   +   + +  T   + S 
Sbjct: 2640 PHPPPTVPPPERPRDDPAPGRVSRPRRARRL-GRAAQASSPPQRPRRRAARPTVGSLTSL 2698

Query: 677  ANIRSAE---QGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQ 733
            A+        + +P +    T        +  +  A     A   +P   ++P   +R  
Sbjct: 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA 2758

Query: 734  SSPTTRSRVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQ 793
              PTT      +P                 +SL+       SP   +   ++    +A  
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Query: 794  GSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQ 853
               +  +     P +                 P   S   G          SP    A  
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878

Query: 854  RSPNTRSRVQSSATTRSTE---------QRSRSRSPLTRSTEQGSPNIRSTEQRASRTRS 904
              P  R R+   A +RSTE         +R            Q  P      Q       
Sbjct: 2879 ARPPVR-RLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Query: 905  ADQA 908
              Q 
Sbjct: 2938 RPQP 2941

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.8 bits (119), Expect = 8e-06
 Identities = 55/310 (17%), Positives = 94/310 (30%), Gaps = 11/310 (3%)

Query: 564 PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQAN 623
           P +P P         G   PP     P +  +P   +    +    +    +    A+A 
Sbjct: 127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAP 186

Query: 624 NSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAE 683
           +S     P  +       R      +     S+ +   A   S    +   SS +  S  
Sbjct: 187 SSPPAEPPPSTPPAAASPR--PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSES 244

Query: 684 QGS---PISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS 740
            G    P +     +    +  + +   +  N  +  P P  SSS   R R  S   +  
Sbjct: 245 SGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSS-PRERSPSPSPSSP 303

Query: 741 RVQSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRS 800
               +P++     SS ++R    SS +  S               +  RS     P   +
Sbjct: 304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP---GPSPSRSPSPSRPPPPA 360

Query: 801 AVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTV-QGAPRIHSREQSSPNTHSAEQRSPNTR 859
               SP  R R   + ++ +A  G PT R      A R   R+ +        + SP   
Sbjct: 361 DP-SSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDA 419

Query: 860 SRVQSSATTR 869
                +   R
Sbjct: 420 GAASGAFYAR 429

Length = 1352

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.5 bits (110), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 513  EPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTI 552
            +P+  G+  S  P G+    + +LSGGE+TL ALA+IF I
Sbjct: 1056 DPFSGGIEISARPPGKGVKNLDNLSGGEKTLVALALIFAI 1095

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 46/267 (17%), Positives = 81/267 (30%), Gaps = 21/267 (7%)

Query: 563 RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQA 622
           R  + PP   P S      SP  P  +        P S +  +P P    +      A +
Sbjct: 184 RAPSSPPAEPPPSTPPAAASPRPPRRSS-------PISASASSPAPAPGRSAADDAGASS 236

Query: 623 NNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSA 682
           ++S+ +        P     +          +           S    +   SS   RS 
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296

Query: 683 EQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV 742
                   +     +     S+ S   ++++S+ +   E S              +RS  
Sbjct: 297 SPSPSSPGSGPAP-SSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP---GPSPSRSPS 352

Query: 743 QSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAV 802
            S P   +   SSP  R R   + +  +A  G P TR R +++   R+  + +       
Sbjct: 353 PSRPPPPADP-SSPRKRPRPSRAPSSPAASAGRP-TRRRARAAVAGRARRRDATGRF--- 407

Query: 803 QRSPNTRSRVQSSLTTHSAEQGSPTTR 829
                   R + S     A  G+   R
Sbjct: 408 -----PAGRPRPSPLDAGAASGAFYAR 429

Length = 1352

>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 57/295 (19%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 639 TRSRVQSSPTTRSRVQSSL---TIQSAEQ-GSPNTRSRVQSSANIRSAEQGSPISRTRFT 694
           + + V        R+Q  L   +I++       N+ S+          +  S        
Sbjct: 23  SDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFS-------- 74

Query: 695 KYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQS 754
                S K    R +    +        +SS N+    Q SP + S   +  +T+SR  S
Sbjct: 75  -SFSSSPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDS 133

Query: 755 SPTTRSRVQSS---LTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSR 811
            P   S VQ     L   S+  G+        ++     +  G+P+ RS  +  P+  S+
Sbjct: 134 GPGDGSPVQKRKNPLLPSSSTHGTHPPIVFTDNNG----SHAGAPNARS-RKEIPSLGSQ 188

Query: 812 VQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNTHSAEQRSPNTRSRVQSSATTRST 871
                + H  ++ S +  S     P I    + S N+  +    P++ + V     + S+
Sbjct: 189 SMQLPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPS---FPHSSTAVLLKRHSGSS 245

Query: 872 EQRSRSRSPLTRSTEQGSPNIRSTEQRASRTRSADQASQSVVTRSRSKLPSKKKD 926
              S   S +T S+        S+++       A  +  +V  + R +L   KKD
Sbjct: 246 -GASLISSNITPSSSNSEAMSTSSKRP--YIYPALLSRVAVEFKMRLQLGDHKKD 297

Length = 1175

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 567 PPPQSDPESGTQGELSP---PTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQAN 623
           P P   P S    E  P    +P  NP +  NP  N    PNP P+   NP+ +      
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374

Query: 624 NSAQNPLPEVSSSPNTRSRVQSSP 647
              +   P V   PN R R +   
Sbjct: 375 PGTRPDSPAVPDRPNGRHRKERKE 398

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 514  PYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP 564
            P+  G+  S  P+G+    ++ +SGGE++L AL+ IF I       Q+ +P
Sbjct: 1053 PFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAI-------QRYKP 1096

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 55/344 (15%), Positives = 83/344 (24%), Gaps = 20/344 (5%)

Query: 563  RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQA 622
            R       S P    +   + PT G        P P     P P+    A P     A A
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

Query: 623  NNS--------AQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQ 674
              +        A   +P   ++P   +R    PTT      +     A            
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

Query: 675  SSANIRSAEQGSPISRTRFTKYTLQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQS 734
            +S +       SP          L    +     + A         + ++ P        
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

Query: 735  SPTTRSRV------QSSPTTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANI 788
            S      V      +  P +RS   + P   +R        +    S +T S        
Sbjct: 2849 SLPLGGSVAPGGDVRRRPPSRSPA-AKPAAPARPPVRRL--ARPAVSRSTESFALPPDQP 2905

Query: 789  RSAEQGSPSIRSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSREQSSPNT 848
                Q         Q  P    + Q         Q      +   GA             
Sbjct: 2906 ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965

Query: 849  HSAEQRSPNTRSRVQSSATTRSTEQRS---RSRSPLTRSTEQGS 889
                 R    R RV   A +R     S    +   L+R +   S
Sbjct: 2966 ALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWAS 3009

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	926
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	100.0
KOG0964|consensus	1200		100.0
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.96
KOG0018|consensus	1141		99.96
KOG0996|consensus	1293		99.93
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.9
KOG0933|consensus	1174		99.82
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.41
PRK02224	880	chromosome segregation protein; Provisional	99.11
PRK03918	880	chromosome segregation protein; Provisional	98.89
KOG0979|consensus	1072		98.74
PRK10869	553	recombination and repair protein; Provisional	98.73
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.7
PHA02562	562	46 endonuclease subunit; Provisional	98.52
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.28
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.05
PRK01156	895	chromosome segregation protein; Provisional	97.93
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.84
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.84
KOG0250|consensus	1074		97.65
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.48
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.22
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	97.21
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.1
cd03239	178	ABC_SMC_head The structural maintenance of chromos	96.99
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	96.86
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	96.78
PF13514	1111	AAA_27: AAA domain	96.57
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.48
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	96.39
PF13166	712	AAA_13: AAA domain	95.89
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	95.73
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.61
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	95.48
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.46
PRK00064	361	recF recombination protein F; Reviewed	95.39
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.21
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	95.16
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.13
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	94.89
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.76
PRK04778	569	septation ring formation regulator EzrA; Provision	94.71
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	94.58
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.48
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	94.47
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	94.41
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.41
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	94.39
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	94.39
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	94.35
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	94.25
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.24
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.22
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.19
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	94.18
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	94.16
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.14
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.11
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	94.11
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.1
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	94.05
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.01
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	94.01
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	93.93
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.92
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	93.9
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.86
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.8
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	93.76
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	93.74
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.73
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.72
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.72
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	93.72
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	93.72
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	93.68
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	93.67
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	93.66
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.65
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	93.63
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.63
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	93.59
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	93.58
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	93.57
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	93.57
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.56
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.55
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.54
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	93.51
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.49
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	93.46
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	93.43
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	93.41
PRK10908	222	cell division protein FtsE; Provisional	93.38
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.37
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	93.36
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	93.36
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	93.36
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	93.35
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	93.31
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	93.3
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	93.29
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	93.25
cd03234	226	ABCG_White The White subfamily represents ABC tran	93.24
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.23
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	93.18
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	93.18
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	93.18
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	93.15
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	93.14
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	93.11
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	93.11
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	93.09
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	93.07
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	93.06
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	93.05
PRK10938	490	putative molybdenum transport ATP-binding protein	93.05
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	93.05
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	93.03
COG4181	228	Predicted ABC-type transport system involved in ly	92.98
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	92.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	92.95
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	92.93
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	92.92
TIGR00611	365	recf recF protein. All proteins in this family for	92.92
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	92.9
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	92.87
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	92.87
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	92.85
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	92.84
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.83
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	92.8
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	92.8
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	92.75
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	92.74
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	92.72
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	92.69
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	92.69
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	92.68
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	92.68
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	92.67
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	92.61
cd03215	182	ABC_Carb_Monos_II This family represents domain II	92.6
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	92.58
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	92.57
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	92.55
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	92.48
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	92.47
PRK14079	349	recF recombination protein F; Provisional	92.46
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	92.42
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	92.36
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	92.32
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	92.32
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	92.3
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	92.29
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	92.28
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	92.26
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	92.22
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	92.2
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	92.19
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	92.18
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	92.15
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	92.15
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	92.14
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	92.11
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	92.01
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	91.98
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	91.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	91.95
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	91.94
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	91.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	91.93
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	91.89
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	91.89
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	91.89
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	91.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	91.86
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	91.84
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	91.77
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	91.75
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	91.75
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	91.73
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.72
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	91.68
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	91.67
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	91.66
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	91.62
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	91.6
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	91.59
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	91.56
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	91.56
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	91.54
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	91.51
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	91.5
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	91.5
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	91.49
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	91.48
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	91.48
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	91.45
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	91.42
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	91.42
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	91.41
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	91.4
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	91.39
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	91.38
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	91.36
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	91.33
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	91.28
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	91.27
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	91.24
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	91.22
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	91.22
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	91.17
cd03299	235	ABC_ModC_like Archeal protein closely related to M	91.17
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	91.16
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	91.16
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	91.15
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	91.14
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	91.14
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	91.11
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	91.09
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	91.09
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	91.08
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	91.08
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	91.04
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	90.97
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	90.92
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	90.89
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	90.89
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	90.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	90.82
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	90.78
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	90.75
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	90.75
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	90.74
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	90.74
cd03246	173	ABCC_Protease_Secretion This family represents the	90.65
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	90.64
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	90.59
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	90.56
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	90.55
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	90.54
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	90.53
PRK13409	590	putative ATPase RIL; Provisional	90.46
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	90.46
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	90.44
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	90.41
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	90.37
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	90.36
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	90.32
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	90.29
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	90.24
PRK09984	262	phosphonate/organophosphate ester transporter subu	90.2
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	90.15
PRK03695	248	vitamin B12-transporter ATPase; Provisional	90.15
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	90.14
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	90.13
cd03216	163	ABC_Carb_Monos_I This family represents the domain	90.03
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	89.95
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	89.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	89.87
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	89.86
PRK10522	547	multidrug transporter membrane component/ATP-bindi	89.81
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	89.81
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	89.81
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	89.76
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	89.72
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	89.65
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	89.55
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	89.51
PRK10938	490	putative molybdenum transport ATP-binding protein	89.45
PRK13409	590	putative ATPase RIL; Provisional	89.43
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	89.2
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	89.19
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	89.12
PRK13546	264	teichoic acids export protein ATP-binding subunit;	89.12
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	89.08
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	89.01
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	88.95
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	88.88
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	88.79
COG4717	984	Uncharacterized conserved protein [Function unknow	88.79
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	88.78
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	88.75
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	88.72
PRK10261	623	glutathione transporter ATP-binding protein; Provi	88.69
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	88.57
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	88.52
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	88.46
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	88.43
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	88.32
PRK10261	623	glutathione transporter ATP-binding protein; Provi	88.29
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	88.27
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	88.25
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	88.24
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	88.17
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	87.98
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	87.98
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	87.83
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	87.67
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	87.6
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	87.6
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	87.45
PRK11147	635	ABC transporter ATPase component; Reviewed	87.43
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	87.42
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	87.38
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	87.28
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	87.24
PRK15064	530	ABC transporter ATP-binding protein; Provisional	87.17
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	87.03
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	86.95
PLN03130	1622	ABC transporter C family member; Provisional	86.87
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	86.35
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	86.23
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	85.77
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	85.48
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	85.3
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	85.3
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	85.24
PRK13536	340	nodulation factor exporter subunit NodI; Provision	84.92
PF00005	137	ABC_tran: ABC transporter This structure is on hol	84.89
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	84.72
PRK13537	306	nodulation ABC transporter NodI; Provisional	84.65
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	84.65
PF13175	415	AAA_15: AAA ATPase domain	84.52
PLN03211	659	ABC transporter G-25; Provisional	84.49
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	84.48
PLN03232	1495	ABC transporter C family member; Provisional	83.93
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	83.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	83.68
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	82.73
PTZ00243	1560	ABC transporter; Provisional	82.65
KOG2391|consensus	365		82.07
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	82.04
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	81.9
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	81.34
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	81.3
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	81.24
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	81.11
PRK15064	530	ABC transporter ATP-binding protein; Provisional	80.98
PRK10535	648	macrolide transporter ATP-binding /permease protei	80.97
PLN03073	718	ABC transporter F family; Provisional	80.74
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	80.65
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	80.53
PRK11147	635	ABC transporter ATPase component; Reviewed	80.51
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	80.29

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=100.00  E-value=4.5e-42  Score=398.84  Aligned_cols=202  Identities=21%  Similarity=0.340  Sum_probs=190.6

Q ss_pred             cChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          379 QDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYK  458 (926)
Q Consensus       379 KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFK  458 (926)
                      ..++.+..++. .|..+|++|+++|+++.++|++|..+++++.++++.|.+.|+++|++++++|+.||+.||++|+.||+
T Consensus       949 ~~i~~le~~i~-~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~ 1027 (1163)
T COG1196         949 REIERLEEEIE-ALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFK 1027 (1163)
T ss_pred             HHHHHHHHHHH-hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666 77777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCch
Q psy834          459 VHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSG  538 (926)
Q Consensus       459 eLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSG  538 (926)
                      .|+                                     +||+|+|.+ .+++|||++||.|.|+||||+++.|++|||
T Consensus      1028 ~L~-------------------------------------~GG~a~L~l-~~~dd~l~~Giei~a~ppgK~~~~l~~LSG 1069 (1163)
T COG1196        1028 ELF-------------------------------------GGGTAELEL-TEPDDPLTAGIEISARPPGKKLQSLSLLSG 1069 (1163)
T ss_pred             HhC-------------------------------------CCCeeEEEe-CCCCchhhcCcEEEEECCCCCccchhhcCC
Confidence            974                                     699999999 677889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q psy834          539 GERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSR  618 (926)
Q Consensus       539 GEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R  618 (926)
                      |||||+|||||||||+|+|     +|||++          |||||||                        |++  ||.|
T Consensus      1070 GEKsLtAlAllFAi~~~~P-----aPf~vL----------DEVDAaL------------------------D~~--Nv~r 1108 (1163)
T COG1196        1070 GEKSLTALALLFAIQKYRP-----APFYVL----------DEVDAAL------------------------DDA--NVER 1108 (1163)
T ss_pred             cHHHHHHHHHHHHHHhhCC-----CCeeee----------ccchhhc------------------------cHH--HHHH
Confidence            9999999999999999999     999999          9999999                        999  9999


Q ss_pred             hhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCCCc
Q psy834          619 RAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSPNT  669 (926)
Q Consensus       619 ~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~~~  669 (926)
                      +       |++|.+|+  .+|.|+| ||.+.||..+|++|||||.+.||...
T Consensus      1109 ~-------~~~i~e~s--~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~v 1151 (1163)
T COG1196        1109 V-------ARLIKEMS--KETQFIVITHRKGTMEAADRLVGVTMQEKGVSKV 1151 (1163)
T ss_pred             H-------HHHHHHhC--cCCeEEEEEcChHHHHHHHHHeeeEeecCCceEE
Confidence            9       99999999  5888999 99999999999999999999998643

>KOG0964|consensus

Probab=100.00  E-value=9.8e-40  Score=369.99  Aligned_cols=255  Identities=13%  Similarity=0.166  Sum_probs=211.2

Q ss_pred             HhhccccccCchhhhhhh---hCCCCCCCcccCCccccCCCccccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy834          338 LYKKSCISFSPRRESLDS---IGSSPSKQHSVGHTTSCNIPLRWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYE  414 (926)
Q Consensus       338 l~~K~~il~skR~E~IRk---LGsLPeeA~s~ekYss~eiPll~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELe  414 (926)
                      +.++++++..||+||+.+   ||+||++||  .+|.......+++.+..|..+|. +|.++|+||++||..|.+|+++|.
T Consensus       914 ~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf--~ky~~~~~~el~kkL~~~neelk-~ys~VNKkAldQf~nfseQre~L~  990 (1200)
T KOG0964|consen  914 LVRRKHMLLKKREECCEKIRELGVLPEDAF--EKYQDKKSKELMKKLHRCNEELK-GYSNVNKKALDQFVNFSEQRESLK  990 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchHHH--HHhccCCHHHHHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHHH
Confidence            456677888899988776   599999997  46988888888899999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcc
Q psy834          415 ADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQ  494 (926)
Q Consensus       415 aRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFsps  494 (926)
                      ++.++|+.+.++|.++|..||++|.+++..||++|+++|.+||.+||              |+|.|.++|....++- ..
T Consensus       991 ~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LV--------------p~G~a~iim~k~d~~~-d~ 1055 (1200)
T KOG0964|consen  991 KRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLV--------------PGGTALIIMRKRDNAN-DH 1055 (1200)
T ss_pred             HHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC--------------CCCceeehhhcccccc-cc
Confidence            99999999999999999999999999999999999999999999998              8999966665443322 11


Q ss_pred             cccCCCceeeeeccCCCCCccccceEEEEeCCCC--cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCC
Q psy834          495 ALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGR--SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSD  572 (926)
Q Consensus       495 al~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGK--r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~  572 (926)
                      ..-++.++++-.-..+..|.| +||.|.|+|.+|  +++.|+|||||||||||||||||||+|||     ||||.+    
T Consensus      1056 ~e~d~~~~~~s~~~~~sv~~y-tGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaIQrcDP-----APFYlf---- 1125 (1200)
T KOG0964|consen 1056 DEDDGDMDGESNEGKDSVEMY-TGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDP-----APFYLF---- 1125 (1200)
T ss_pred             ccccccccccccccccchhhc-cceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-----cchhhH----
Confidence            100011111111123446666 599999999775  78999999999999999999999999999     999999    


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHH
Q psy834          573 PESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRS  651 (926)
Q Consensus       573 ~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~s  651 (926)
                            ||+||-|                        | |        |---+..+++.|||..  +-|+. |-.|-..+
T Consensus      1126 ------DEIDAaL------------------------D-a--------QyR~aVa~lIkelS~~--aQFI~TTFRpEll~ 1164 (1200)
T KOG0964|consen 1126 ------DEIDAAL------------------------D-A--------QYRTAVADLIKELSDS--AQFITTTFRPELLS 1164 (1200)
T ss_pred             ------hHHhhhc------------------------c-H--------HHHHHHHHHHHHHhhc--cceEeecccHHHHH
Confidence                  9999999                        3 2        3333447899999996  66999 88888888


Q ss_pred             hhhhhcceee
Q psy834          652 RVQSSLTIQS  661 (926)
Q Consensus       652 r~~~~~~v~~  661 (926)
                      -.|..|||-.
T Consensus      1165 vAdKfygV~f 1174 (1200)
T KOG0964|consen 1165 VADKFYGVKF 1174 (1200)
T ss_pred             HHHhhhceee
Confidence            8899999964

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.96  E-value=1.5e-29  Score=284.01  Aligned_cols=198  Identities=18%  Similarity=0.297  Sum_probs=181.3

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV  459 (926)
Q Consensus       380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe  459 (926)
                      .+..+..++. ++..++++|+++|+++.++|+++..++++|.++++.|.+.|+.|++++++.|+.||+.|+.+|..||..
T Consensus       959 ~l~~l~~~i~-~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~ 1037 (1164)
T TIGR02169       959 ELQRVEEEIR-ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAE 1037 (1164)
T ss_pred             HHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555565 666666999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchh
Q psy834          460 HLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGG  539 (926)
Q Consensus       460 LV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGG  539 (926)
                      |+                                      ||.|.|.+ .+++|||..||.|.|.|+|+.+..+..||||
T Consensus      1038 l~--------------------------------------~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgg 1078 (1164)
T TIGR02169      1038 LS--------------------------------------GGTGELIL-ENPDDPFAGGLELSAKPKGKPVQRLEAMSGG 1078 (1164)
T ss_pred             Hh--------------------------------------CCeEEEEe-cCCCCcccCCeEEEEEcCCCCCCcchhcCcc
Confidence            74                                      78999998 6678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q psy834          540 ERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRR  619 (926)
Q Consensus       540 EKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~  619 (926)
                      ||+++||||+||++.+.|     .|||++          ||+++.+                        |..  |+.++
T Consensus      1079 e~~~~~la~~~~~~~~~~-----~~~~~l----------DE~~~~l------------------------d~~--~~~~~ 1117 (1164)
T TIGR02169      1079 EKSLTALSFIFAIQRYKP-----SPFYAF----------DEVDMFL------------------------DGV--NVERV 1117 (1164)
T ss_pred             hHHHHHHHHHHHHHhcCC-----CCcEEe----------ccccccc------------------------CHH--HHHHH
Confidence            999999999999999999     999999          9999999                        888  89999


Q ss_pred             hhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834          620 AQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP  667 (926)
Q Consensus       620 ~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~  667 (926)
                             ..+|.+++.  ++.|+| ||++.+|...|+++||+|.|.||-
T Consensus      1118 -------~~~l~~~~~--~~~~i~~t~~~~~~~~~d~~~~~~~~~~g~S 1157 (1164)
T TIGR02169      1118 -------AKLIREKAG--EAQFIVVSLRSPMIEYADRAIGVTMRRNGES 1157 (1164)
T ss_pred             -------HHHHHHhcC--CCeEEEEECcHHHHHhcceeEeEEEecCCee
Confidence                   778888876  366888 999999999999999999999974

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0018|consensus

Probab=99.96  E-value=4.6e-30  Score=294.22  Aligned_cols=256  Identities=23%  Similarity=0.322  Sum_probs=195.5

Q ss_pred             cccccccccCCchhhHHHHHHHHHhhccccccCchhhhhhh--hCCCCCCCccc--CCccccCCCc---cccChhHHHHH
Q psy834          315 LCGTLNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDS--IGSSPSKQHSV--GHTTSCNIPL---RWQDRGGVCRQ  387 (926)
Q Consensus       315 l~g~~n~~d~~~h~Li~K~qq~fl~~K~~il~skR~E~IRk--LGsLPeeA~s~--ekYss~eiPl---l~KdleeL~~e  387 (926)
                      |...|+-+|...|-+-.++.+.-.-+..-+.+-|- |+|.=  +|-.+.+....  =+|+.  +|.   +.++++++...
T Consensus       868 ~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl-~~I~vPl~~gs~~d~~~~ieidy~~--L~~~y~L~~kl~e~~~~  944 (1141)
T KOG0018|consen  868 LVKELTKLDKEITSIESKIERKESERHNLLSKCKL-EDIEVPLSSGSMDDIVIGIEIDYSG--LPREYKLQQKLEEKQSV  944 (1141)
T ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh-ccccccccCCCccccceeccccccc--ccHHHHHHHHHHHHHHH
Confidence            44556677777777777665544433332222221 22220  10011111000  12322  222   22344444555


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy834          388 HDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQ  467 (926)
Q Consensus       388 L~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssP  467 (926)
                      |. ++. -|+||++.|+.+.  +.++..+++.++++.+.+++.|+.++++|.++|++||++|+.+++.||+.|+ |    
T Consensus       945 l~-~~~-Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Lt-n---- 1015 (1141)
T KOG0018|consen  945 LN-RIA-PNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELT-N---- 1015 (1141)
T ss_pred             HH-HhC-cchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c----
Confidence            55 442 2389999999999  9999999999999999999999999999999999999999999999999997 1    


Q ss_pred             hhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHH
Q psy834          468 VYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALA  547 (926)
Q Consensus       468 i~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALA  547 (926)
                                                     ..|+|+|.+ +|++|||..||.|.|+||||++++|.+|||||||++|||
T Consensus      1016 -------------------------------t~g~AyL~~-en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLA 1063 (1141)
T KOG0018|consen 1016 -------------------------------TEGQAYLGL-ENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALA 1063 (1141)
T ss_pred             -------------------------------cccceeecC-CCCCcchhcCccccccCCccccCchhhcCccHHHHHHHH
Confidence                                           248999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCC
Q psy834          548 MIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQ  627 (926)
Q Consensus       548 LIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~  627 (926)
                      |+||||.|+|     |||+||          |||||.|                        |--  ||.|.|-      
T Consensus      1064 LLFaihsy~P-----aPFfvl----------DEiDAAL------------------------Dnt--Ni~kvas------ 1096 (1141)
T KOG0018|consen 1064 LLFAIHSYKP-----APFFVL----------DEIDAAL------------------------DNT--NIGKVAS------ 1096 (1141)
T ss_pred             HHHHhccCCC-----CCceeh----------hhHHHHh------------------------hhc--cHHHHHH------
Confidence            9999999999     999999          9999999                        655  9999943      


Q ss_pred             CChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCC
Q psy834          628 NPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       628 ~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                       -+.    +.|--|+| +-.+.--...|.|.||.--+.++
T Consensus      1097 -yIr----~~~~Q~IvISLK~~~y~kadaLVGvyr~~~~~ 1131 (1141)
T KOG0018|consen 1097 -YIR----SSNFQFIVISLKEEFYQKADALVGVYRDQEDC 1131 (1141)
T ss_pred             -HHh----cCCceEEEEeccHHHhhhhhceeeeccCcccc
Confidence             222    55677999 88888889999999999875555

>KOG0996|consensus

Probab=99.93  E-value=5e-26  Score=262.87  Aligned_cols=192  Identities=20%  Similarity=0.273  Sum_probs=171.0

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKV  459 (926)
Q Consensus       380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKe  459 (926)
                      ++..|+.+++ .+..+...++.+|....+.|..-...++......++.++.++.|+++|.+.||..|..|+.++.++|+.
T Consensus      1079 ~i~~lE~~~~-~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQm 1157 (1293)
T KOG0996|consen 1079 KIALLEKRVE-ELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQM 1157 (1293)
T ss_pred             HHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666 665555799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchh
Q psy834          460 HLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGG  539 (926)
Q Consensus       460 LV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGG  539 (926)
                      +|                                     .||+|+|++ .|..|||..||.|+|+||.|.|+.|.+||||
T Consensus      1158 IT-------------------------------------~GGdAeLEl-VDslDPFseGV~FSVrPpKKSWK~I~NLSGG 1199 (1293)
T KOG0996|consen 1158 IT-------------------------------------LGGDAELEL-VDSLDPFSEGVMFSVRPPKKSWKNISNLSGG 1199 (1293)
T ss_pred             Hh-------------------------------------cCCcceeEe-eccCCCcccCceEEeeCchhhhhhcccCCcc
Confidence            98                                     399999999 7789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q psy834          540 ERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRR  619 (926)
Q Consensus       540 EKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~  619 (926)
                      ||||.+||||||+|+|+|     .||||-          ||+||.|                        |--  ||+=.
T Consensus      1200 EKTLSSLALVFALH~YkP-----TPlYVM----------DEIDAAL------------------------Dfk--NVSIV 1238 (1293)
T KOG0996|consen 1200 EKTLSSLALVFALHHYKP-----TPLYVM----------DEIDAAL------------------------DFK--NVSIV 1238 (1293)
T ss_pred             hhHHHHHHHHHHHHccCC-----CCceeh----------hhHHHhh------------------------ccc--cchhH
Confidence            999999999999999999     999999          9999999                        777  99988


Q ss_pred             hhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhccee
Q psy834          620 AQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTIQ  660 (926)
Q Consensus       620 ~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v~  660 (926)
                             .|-+.|++.  |.-|+|-+=.--|= =-++|+||-
T Consensus      1239 -------anYIkErTk--NAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1239 -------ANYIKERTK--NAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred             -------HHHHHHhcc--CCeEEEEEehhhHHHHHhhheeeE
Confidence                   677889888  66699966554443 347888874

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.90  E-value=2.9e-23  Score=231.80  Aligned_cols=199  Identities=21%  Similarity=0.315  Sum_probs=175.9

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQLNKEQQRLAPLL----DRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKF---ENMYDFVNDN  452 (926)
Q Consensus       380 dleeL~~eL~~KLk~vnkKAIEQYEEfe----EQyEELeaRrEELdKekeSIrELIEeLDKEKrEAF---mkTFKQVNen  452 (926)
                      .+..+..++. .|+.    |+++|+.+.    ++|++|..+++||..++..|.+.|..+++..++.|   ..+|..|+.+
T Consensus       966 ~~~~l~~~i~-~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~ 1040 (1179)
T TIGR02168       966 DEEEARRRLK-RLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040 (1179)
T ss_pred             CHHHHHHHHH-HHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666 6665    999999988    99999999999999999999999999999999999   9999999999


Q ss_pred             HHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccc
Q psy834          453 IDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVG  532 (926)
Q Consensus       453 FsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~Qs  532 (926)
                      |..+|..|..                          .+|       .||.++|.+ ++++|||..||.|.|.|+++....
T Consensus      1041 f~~~F~~lf~--------------------------~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1179)
T TIGR02168      1041 VNENFQRVFP--------------------------KLF-------GGGEAELRL-TDPEDLLEAGIEIFAQPPGKKNQN 1086 (1179)
T ss_pred             HHHHHHHHHH--------------------------HHh-------CCCeEEEEe-CCCCcccccCceEEEeCCCCcccc
Confidence            9999999861                          134       589999999 677899999999999999999999


Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||++||++.+.|     .||+.+          ||+++-+                        |..
T Consensus      1087 ~~~lS~g~~~~~~l~~~~~~~~~~~-----~~~~~l----------DE~~~~l------------------------d~~ 1127 (1179)
T TIGR02168      1087 LSLLSGGEKALTALALLFAIFKVKP-----APFCIL----------DEVDAPL------------------------DDA 1127 (1179)
T ss_pred             ccccCccHHHHHHHHHHHHHHccCC-----CCeEEe----------cCccccc------------------------cHH
Confidence            9999999999999999999999999     999999          9999988                        666


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP  667 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~  667 (926)
                        |...+       .++|..++.. .+ |+| +|++..+..+|+.+||++.|.|+-
T Consensus      1128 --~~~~~-------~~~~~~~~~~-~~-~i~~sh~~~~~~~~d~~~~~~~~~~~~~ 1172 (1179)
T TIGR02168      1128 --NVERF-------ANLLKEFSKN-TQ-FIVITHNKGTMEVADQLYGVTMQEKGVS 1172 (1179)
T ss_pred             --HHHHH-------HHHHHHhccC-CE-EEEEEcChhHHHHhhhHeeeeeccCCce
Confidence              77777       6778888764 33 665 999999999999999999999953

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0933|consensus

Probab=99.82  E-value=8.8e-20  Score=209.62  Aligned_cols=151  Identities=19%  Similarity=0.296  Sum_probs=131.6

Q ss_pred             ChhHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQL-NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYK  458 (926)
Q Consensus       380 dleeL~~eL~~KLk~vn-kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFK  458 (926)
                      .+.++..... +|...+ +++++-++..++++.+|..+++.+.+.+.+|.+-|+.||+++++.+..+|.+||..|..||.
T Consensus       966 ~l~~Lq~k~~-~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs 1044 (1174)
T KOG0933|consen  966 ELKKLQEKKE-KLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFS 1044 (1174)
T ss_pred             HHHHhhHHHH-HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3444444444 444333 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCch
Q psy834          459 VHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSG  538 (926)
Q Consensus       459 eLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSG  538 (926)
                      .|.                                     .|..|.|...+  ...|..|++|.|.|.|-.-..+..|||
T Consensus      1045 ~LL-------------------------------------Pga~AkL~Ppe--g~~~~dGLEvkV~~G~iWKeSL~ELSG 1085 (1174)
T KOG0933|consen 1045 TLL-------------------------------------PGAMAKLEPPE--GKTVLDGLEVKVKFGGIWKESLSELSG 1085 (1174)
T ss_pred             HhC-------------------------------------CCccccccCCC--CCccccceEEEEEeCccHHHHHHHhcC
Confidence            986                                     26778887732  334667999999996666678999999


Q ss_pred             hHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          539 GERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       539 GEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      ||+|||||+||||+.+|+|     ||||.+          |||||.|
T Consensus      1086 GQRSLVALsLIlamL~fkP-----APlYIL----------DEVDAAL 1117 (1174)
T KOG0933|consen 1086 GQRSLVALSLILAMLKFKP-----APLYIL----------DEVDAAL 1117 (1174)
T ss_pred             chHHHHHHHHHHHHHcCCC-----Cceeeh----------hhhHHhh
Confidence            9999999999999999999     999999          9999999

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.41  E-value=6.6e-14  Score=133.32  Aligned_cols=84  Identities=23%  Similarity=0.367  Sum_probs=71.2

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++||||+||+++++|     .|||++          ||||+.|                        |+. 
T Consensus       135 ~~lSgGEk~~~~Lal~lA~~~~~~-----~p~~il----------DEvd~~L------------------------D~~-  174 (220)
T PF02463_consen  135 EFLSGGEKSLVALALLLALQRYKP-----SPFLIL----------DEVDAAL------------------------DEQ-  174 (220)
T ss_dssp             TGS-HHHHHHHHHHHHHHHHTCS-------SEEEE----------ESTTTTS-------------------------HH-
T ss_pred             cccccccccccccccccccccccc-----cccccc----------ccccccc------------------------ccc-
Confidence            489999999999999999999999     999999          9999999                        888 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP  667 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~  667 (926)
                       |..++       +.+|.+.+.  +..|+| ||.+.+++.+|..+||+|.|.|+-
T Consensus       175 -~~~~l-------~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~~~v~~~~~g~~  219 (220)
T PF02463_consen  175 -NRKRL-------ADLLKELSK--QSQFIITTHNPEMFEDADKLIGVTMVENGVS  219 (220)
T ss_dssp             -HHHHH-------HHHHHHHTT--TSEEEEE-S-HHHHTT-SEEEEEEECCTTCE
T ss_pred             -ccccc-------ccccccccc--ccccccccccccccccccccccccccccccC
Confidence             89999       888988876  466888 999999999999999999999983

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK02224 chromosome segregation protein; Provisional

Probab=99.11  E-value=2.3e-09  Score=121.84  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             ceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcc--------ccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL--------VVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPN  589 (926)
Q Consensus       518 GVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKc--------DP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~  589 (926)
                      +|.+ +.++|+ ...+..||||||.++||||.|||.++        .|     .|++++          ||..+.+    
T Consensus       766 ~i~~-~~~~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~-----~~~~il----------DEp~~~l----  824 (880)
T PRK02224        766 ELTV-YQKDGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAP-----LPPLIL----------DEPTVFL----  824 (880)
T ss_pred             ceee-eCCCCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCC-----CCceEe----------cCCcccC----
Confidence            4444 334444 55788999999999999999998763        23     466778          7877777    


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhhhhhccee
Q psy834          590 PHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~~~~~~v~  660 (926)
                                          |..  ++.++       +++|..++.... +=++|+|++-.+..+|+.++|+
T Consensus       825 --------------------D~~--~~~~~-------~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~  867 (880)
T PRK02224        825 --------------------DSG--HVSQL-------VDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVE  867 (880)
T ss_pred             --------------------CHH--HHHHH-------HHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEee
Confidence                                666  77777       778888875444 3445599999999999999985

>PRK03918 chromosome segregation protein; Provisional

Probab=98.89  E-value=6.6e-08  Score=109.63  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=66.3

Q ss_pred             eEEEEeCCCCcccccccCchhHHHHHHHHHHHHHh--ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          519 MNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIW--KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNP  596 (926)
Q Consensus       519 VeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQ--KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~  596 (926)
                      +.+.+.. ++....+..|||||+.++||||.+||-  .+.+     .|++++          ||..+.+           
T Consensus       773 ~~i~~l~-~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~-----~~~lil----------DEp~~~l-----------  825 (880)
T PRK03918        773 VKLFVVY-QGKERPLTFLSGGERIALGLAFRLALSLYLAGN-----IPLLIL----------DEPTPFL-----------  825 (880)
T ss_pred             eEEEEeC-CCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCC-----CCeEEE----------eCCCccc-----------
Confidence            4454444 444678899999999999999877664  3444     578888          7766666           


Q ss_pred             CCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecC
Q psy834          597 NPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQ  664 (926)
Q Consensus       597 ~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~  664 (926)
                                   |..  +..++       .+.|..+.....|=++|||++.....+|+.+.|.....
T Consensus       826 -------------D~~--~~~~l-------~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~~~~  871 (880)
T PRK03918        826 -------------DEE--RRRKL-------VDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLEGG  871 (880)
T ss_pred             -------------CHH--HHHHH-------HHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEecCC
Confidence                         444  44444       45566655444455566999988888888888776653

>KOG0979|consensus

Probab=98.74  E-value=1.9e-07  Score=109.87  Aligned_cols=152  Identities=17%  Similarity=0.225  Sum_probs=124.3

Q ss_pred             ChhHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQL------NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNI  453 (926)
Q Consensus       380 dleeL~~eL~~KLk~vn------kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenF  453 (926)
                      +.+++...+.+.....+      ..|+++|+...+++.+|..+++...+..+.|++.|..++..=...+.....+||+.|
T Consensus       836 t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~F  915 (1072)
T KOG0979|consen  836 TMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERF  915 (1072)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            66666666665555444      689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCC---cc
Q psy834          454 DATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGR---SY  530 (926)
Q Consensus       454 sEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGK---r~  530 (926)
                      ..+|..+-                                     ..|...|+.  ++.|--.=||.|.|.|-..   .-
T Consensus       916 s~~F~~mg-------------------------------------~aGeV~L~~--~~~DydkwgI~ImVkFR~s~~L~~  956 (1072)
T KOG0979|consen  916 SQLFSSMG-------------------------------------CAGEVSLEV--NPLDYDKWGIMIMVKFRDSEGLKV  956 (1072)
T ss_pred             HHHHhhcc-------------------------------------cCceEEecc--CcccHhHhceEEEEEEccCccccc
Confidence            99999852                                     234444432  4444222399999999533   23


Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      ..-+.-||||+|+..+=.++|||-+.|     +||-+-          ||+--=+
T Consensus       957 L~sh~QSGGERSVSTiLYLlALQ~l~~-----~PFRvV----------DEINQGM  996 (1072)
T KOG0979|consen  957 LDSHRQSGGERSVSTILYLLALQELTP-----APFRVV----------DEINQGM  996 (1072)
T ss_pred             ccccccCCcchHHHHHHHHHHHhhccC-----CCeeeh----------hhhhcCC
Confidence            456778999999999999999999999     999999          9987666

>PRK10869 recombination and repair protein; Provisional

Probab=98.73  E-value=2.5e-07  Score=103.21  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=78.5

Q ss_pred             ceEEEEeC-CCCcccccc-cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTP-QGRSYVGIQ-HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN  595 (926)
Q Consensus       518 GVeISVSP-PGKr~QsIQ-QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~  595 (926)
                      .|+|.+++ ||+..+++. .|||||+++++||+.+++..+++     .|++++          ||+|+-+          
T Consensus       411 ~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~-----~~~li~----------DEpd~gl----------  465 (553)
T PRK10869        411 RIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKME-----TPALIF----------DEVDVGI----------  465 (553)
T ss_pred             EEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCC-----CCEEEE----------ECCCCCC----------
Confidence            57888876 677777754 79999999999999999988887     799999          9999999          


Q ss_pred             CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecC
Q psy834          596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQ  664 (926)
Q Consensus       596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~  664 (926)
                                    |..  ...++       ++.|.+++.. .|=++|||.|-..+..|+.|-|.-...
T Consensus       466 --------------d~~--~~~~v-------~~~l~~l~~~-~qvi~iTH~~~~~~~ad~~~~v~k~~~  510 (553)
T PRK10869        466 --------------SGP--TAAVV-------GKLLRQLGES-TQVMCVTHLPQVAGCGHQHFFVSKETD  510 (553)
T ss_pred             --------------CHH--HHHHH-------HHHHHHHhcC-CEEEEEecCHHHHHhCCEEEEEecccc
Confidence                          554  56666       7788999753 444555999988888899988865443

>TIGR00634 recN DNA repair protein RecN

Probab=98.70  E-value=3.4e-07  Score=101.62  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=78.4

Q ss_pred             ceEEEEeC-CCCccccc-ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTP-QGRSYVGI-QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN  595 (926)
Q Consensus       518 GVeISVSP-PGKr~QsI-QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~  595 (926)
                      .|+|.+++ +|+..+++ ..|||||+++++||+.+++..+++     .|++++          ||+++-+          
T Consensus       421 ~v~f~~~~n~g~~~~pl~~~lSgGe~~rv~la~~l~~~~~~~-----~~~lil----------DEp~~gl----------  475 (563)
T TIGR00634       421 QVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSSAA-----VTTLIF----------DEVDVGV----------  475 (563)
T ss_pred             EEEEEEecCCCCCCCChhhhcCHhHHHHHHHHHHHhhCCCCC-----CCEEEE----------ECCCCCC----------
Confidence            58888877 68777877 689999999999999999877666     699999          9999999          


Q ss_pred             CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecC
Q psy834          596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQ  664 (926)
Q Consensus       596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~  664 (926)
                                    |..  +..++       ...|.+++. ..|=++|||.|-.+...|+.+.|.-...
T Consensus       476 --------------d~~--~~~~~-------~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k~~~  520 (563)
T TIGR00634       476 --------------SGE--TAQAI-------AKKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEKEGL  520 (563)
T ss_pred             --------------CHH--HHHHH-------HHHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEEccC
Confidence                          555  56666       667888875 3444555999999998999988865543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.52  E-value=1.4e-06  Score=94.31  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=62.5

Q ss_pred             EEEeCCCCcccccccCchhHHHHHHHHHHHHHhc-------cccCCCCCCceecCCCCCCCCCCCCCC-CCCCCCCCCCC
Q psy834          521 FSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWK-------LVVRVQQLRPLTPPPQSDPESGTQGEL-SPPTPGPNPHS  592 (926)
Q Consensus       521 ISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQK-------cDP~V~q~aPi~~~~~~~~~~~~~~Ev-~~p~~~~~~~~  592 (926)
                      ..+...|.....+..||||||.+++||+.||+..       .+|      +|+.+          ||. ++-+       
T Consensus       454 ~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~------~~lil----------DEp~~~~l-------  510 (562)
T PHA02562        454 ETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDT------NLLIL----------DEVFDGAL-------  510 (562)
T ss_pred             hHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCc------CeEEE----------ecccCccc-------
Confidence            3344445444577899999999999999998522       244      78888          776 3556       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee
Q psy834          593 RVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~  660 (926)
                                       |..  +..++       .+.|.++  ...|-++|+|++..+..+|+.+.+.
T Consensus       511 -----------------d~~--~~~~~-------~~~l~~~--~~~~iiiish~~~~~~~~d~~~~l~  550 (562)
T PHA02562        511 -----------------DAE--GTKAL-------LSILDSL--KDTNVFVISHKDHDPQKFDRHLKME  550 (562)
T ss_pred             -----------------chh--HHHHH-------HHHHHhC--CCCeEEEEECchhchhhhhcEEEEE
Confidence                             544  56666       5566666  2346666799998889999887664

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.28  E-value=2.6e-05  Score=88.19  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeee
Q psy834          426 ILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFL  505 (926)
Q Consensus       426 SIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeL  505 (926)
                      .+..+.+.|+.-+..........+.+.+.++|++|...                                   .+-...+
T Consensus       484 ~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k-----------------------------------~~~~~~v  528 (650)
T TIGR03185       484 IADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK-----------------------------------HNLISRL  528 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------------cCceeEE
Confidence            33444555555555555566667888888888887510                                   0001233


Q ss_pred             eccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcccc
Q psy834          506 DITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVV  557 (926)
Q Consensus       506 dLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP  557 (926)
                      .+ +  .+.|    .+.+.-..+....+..||||||.++||||++||.++..
T Consensus       529 ~i-d--~~~~----~~~l~~~~g~~~~~~~lS~Ge~~~~~la~~~al~~~~~  573 (650)
T TIGR03185       529 KI-D--PETF----AVSLYDNNGKHIDKERLSAGERQILAIALLWGLAKVSG  573 (650)
T ss_pred             EE-c--CCce----eEEEEcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33 1  1223    33333333456788999999999999999999988654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.05  E-value=9.2e-05  Score=86.63  Aligned_cols=178  Identities=17%  Similarity=0.153  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCC
Q psy834          399 EQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHT--RRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWP  476 (926)
Q Consensus       399 AIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKE--KrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP  476 (926)
                      .++++.....+++.+..+.+.+.+....+..+-..+.+.  +...+......|...+..+|..++.+             
T Consensus       717 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-------------  783 (908)
T COG0419         717 LIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLN-------------  783 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence            444555555555555566666665555555555555555  67777777777777777777776511             


Q ss_pred             CcccchhhhhhccccCcccccCCCceeeeecc-CCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcc
Q psy834          477 KKKENLVIVVQSNLFSPQALTQSFGHAFLDIT-GAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL  555 (926)
Q Consensus       477 ~GkGNLvIv~qSnLFspsal~qgGGsAeLdLt-EDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKc  555 (926)
                                               ..++... ...+..  +|..|.|.-++. +..+..|||||+.++||||-+||..+
T Consensus       784 -------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~-~r~~~~LSGGE~~~~sLalrLALs~~  835 (908)
T COG0419         784 -------------------------RYDLRRLTIRKDGN--GGLVVVVYDGGE-VRPIKTLSGGERFLASLALRLALSDL  835 (908)
T ss_pred             -------------------------cHHHHHHHHHhccc--cceEEEEecCCC-ccccccCCchHHHHHHHHHHHHHHHH
Confidence                                     1111000 000000  133444444444 78999999999999999999999877


Q ss_pred             ccCCCCC--CceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhh
Q psy834          556 VVRVQQL--RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEV  633 (926)
Q Consensus       556 DP~V~q~--aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~  633 (926)
                      --   .-  -++..+          ||=-.=|                        |..  ++++.       -..|.++
T Consensus       836 ~~---~~~~l~~l~L----------DEpf~~L------------------------D~e--~l~~l-------~~~l~~i  869 (908)
T COG0419         836 LQ---GRARLELLFL----------DEPFGTL------------------------DEE--RLEKL-------AEILEEL  869 (908)
T ss_pred             Hh---cccCCCeeEe----------eCCCCCC------------------------CHH--HHHHH-------HHHHHHH
Confidence            54   22  355566          4422222                        444  67777       5567888


Q ss_pred             ccCCCceeEeecChhhHHhhhhhcceeeec
Q psy834          634 SSSPNTRSRVQSSPTTRSRVQSSLTIQSAE  663 (926)
Q Consensus       634 ~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE  663 (926)
                      .+...+=-+|+|.+--..|++..+-|.-..
T Consensus       870 ~~~~~qiiIISH~eel~e~~~~~i~V~k~~  899 (908)
T COG0419         870 LSDGRQIIIISHVEELKERADVRIRVKKDG  899 (908)
T ss_pred             HhcCCeEEEEeChHHHHHhCCeEEEEEecC
Confidence            776444455599999999999999998776

>PRK01156 chromosome segregation protein; Provisional

Probab=97.93  E-value=0.00031  Score=81.37  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             CcccccccCchhHHHHHHHHHHHHHhc--cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          528 RSYVGIQHLSGGERTLAALAMIFTIWK--LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN  605 (926)
Q Consensus       528 Kr~QsIQQLSGGEKSLVALALIFAIQK--cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~  605 (926)
                      .....+..||||||.++||||-+||-+  +.+     .+|+.+          ||..+.+                    
T Consensus       794 ~~~~~~~~lS~G~~~~~~la~rlala~~l~~~-----~~~lil----------DEpt~~l--------------------  838 (895)
T PRK01156        794 GMVEGIDSLSGGEKTAVAFALRVAVAQFLNND-----KSLLIM----------DEPTAFL--------------------  838 (895)
T ss_pred             CccCccccCCHhHHHHHHHHHHHHHHHHhccC-----CCeEEE----------eCCCCcC--------------------
Confidence            345678899999999999998888743  344     588888          8866666                    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCCChhhhc-cCC--CceeEeecChhhHHhhhhhcceeeecCCC
Q psy834          606 PNPNSRANPNLSRRAQANNSAQNPLPEVS-SSP--NTRSRVQSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~-~~~--~tr~~v~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                          |+.  +...+       .+.|.... ...  .|=++|||++....-+|+.+.|+-- .|+
T Consensus       839 ----D~~--~~~~l-------~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~~~~-~~~  888 (895)
T PRK01156        839 ----DED--RRTNL-------KDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVKKS-SGS  888 (895)
T ss_pred             ----CHH--HHHHH-------HHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEEEec-CCe
Confidence                555  44444       33343322 221  2345569999988888888888753 443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.84  E-value=8.4e-05  Score=85.06  Aligned_cols=84  Identities=13%  Similarity=0.213  Sum_probs=79.0

Q ss_pred             cccChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          377 RWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDAT  456 (926)
Q Consensus       377 l~KdleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEI  456 (926)
                      +...++.+-..+. .|+.+.++|+++|+.+.+++++|...+++|.+.+.+|.+.|..+..++.++|+.+|+.++..|..+
T Consensus       970 l~~~i~~lg~aie-e~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~l 1048 (1179)
T TIGR02168       970 ARRRLKRLENKIK-ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRV 1048 (1179)
T ss_pred             HHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777888 999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy834          457 YKVHL  461 (926)
Q Consensus       457 FKeLV  461 (926)
                      |..|+
T Consensus      1049 f~~~~ 1053 (1179)
T TIGR02168      1049 FPKLF 1053 (1179)
T ss_pred             HHHHh
Confidence            99998

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.84  E-value=1.7e-05  Score=77.42  Aligned_cols=92  Identities=25%  Similarity=0.359  Sum_probs=74.0

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP  606 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~  606 (926)
                      +.....+..||||||.+++||..+++..+.|     .++..+          ||..+-+                     
T Consensus       105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~-----~~illl----------DEP~~~L---------------------  148 (197)
T cd03278         105 GKKVQRLSLLSGGEKALTALALLFAIFRVRP-----SPFCVL----------DEVDAAL---------------------  148 (197)
T ss_pred             CccccchhhcCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------eCCcccC---------------------
Confidence            3445678899999999999999998877778     789999          8877777                     


Q ss_pred             CCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCCC
Q psy834          607 NPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSP  667 (926)
Q Consensus       607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~~  667 (926)
                         |..  +...+       .+.|.++.. ..|=.+|+|++-.+...|+.++|+|.+.|++
T Consensus       149 ---D~~--~~~~l-------~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~~~~~~~  196 (197)
T cd03278         149 ---DDA--NVERF-------ARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTMQESGVS  196 (197)
T ss_pred             ---CHH--HHHHH-------HHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEeccCCCC
Confidence               555  56666       667778765 2343344999999999999999999999986

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0250|consensus

Probab=97.65  E-value=0.00044  Score=83.06  Aligned_cols=98  Identities=18%  Similarity=0.348  Sum_probs=75.8

Q ss_pred             EEEE-eCCCC-c--ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          520 NFSC-TPQGR-S--YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN  595 (926)
Q Consensus       520 eISV-SPPGK-r--~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~  595 (926)
                      +|.| .|+++ +  ..++.-|||||||-+.+||++|||..--     .||..+          ||.|-=+          
T Consensus       970 ~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me-----~Pfr~L----------DEFDVFM---------- 1024 (1074)
T KOG0250|consen  970 SISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVME-----CPFRAL----------DEFDVFM---------- 1024 (1074)
T ss_pred             chhhccCCCCcccccccccccCcccchHHHHHHHHHHhHhhc-----Cchhhh----------hHHHHHH----------
Confidence            5566 55433 3  7899999999999999999999999999     999999          9999877          


Q ss_pred             CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCCC
Q psy834          596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGSP  667 (926)
Q Consensus       596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~~  667 (926)
                                    |    +|.|.     -+-++|-+|+..--+-|++ |  |--|+-+.+..||+..+-+-|
T Consensus      1025 --------------D----~vNRK-----i~~dlLv~~a~~~~~Q~IfiT--Pqdi~~l~~~~~i~v~rm~~p 1072 (1074)
T KOG0250|consen 1025 --------------D----MVNRK-----ISMDLLVDFAKKKGRQFIFIT--PQDISKLNSDDGIVVFRMSDP 1072 (1074)
T ss_pred             --------------H----HHHHH-----HHHHHHHHHHHhhcceEEEEc--cccHhhhccccceEEeeccCC
Confidence                          3    46776     2356777777666666776 5  556777777888887766554

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.48  E-value=6.9e-05  Score=74.70  Aligned_cols=92  Identities=21%  Similarity=0.320  Sum_probs=72.8

Q ss_pred             EeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          523 CTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRA  602 (926)
Q Consensus       523 VSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~  602 (926)
                      ..|+++....+..||||||.+++||..|+...|.|     .+++.+          ||..+-+                 
T Consensus       143 ~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~-----p~~lll----------DEPt~~L-----------------  190 (247)
T cd03275         143 KNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP-----APFFVL----------DEVDAAL-----------------  190 (247)
T ss_pred             ccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------ecccccC-----------------
Confidence            34566777888999999999999999999988888     789999          8877777                 


Q ss_pred             CCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834          603 NPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA  662 (926)
Q Consensus       603 ~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a  662 (926)
                             |..  ....+       .+.|.++.....|=++|+|++..+.-.|+.+++.+-
T Consensus       191 -------D~~--~~~~l-------~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~  234 (247)
T cd03275         191 -------DNT--NVGKV-------ASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRD  234 (247)
T ss_pred             -------CHH--HHHHH-------HHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEec
Confidence                   444  45556       556777776545656669999999999999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.22  E-value=0.0003  Score=70.01  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      ...+..||||||.+++||..||...+.|     ..++.+          ||..+.+                        
T Consensus       161 ~~~~~~lS~G~~qr~~la~al~~~~~~~-----~~illl----------DEPt~~l------------------------  201 (251)
T cd03273         161 KESLTELSGGQRSLVALSLILALLLFKP-----APMYIL----------DEVDAAL------------------------  201 (251)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhhccC-----CCEEEE----------eCCCcCC------------------------
Confidence            3467799999999999999999877777     789999          8877777                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCC
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                      |..  +...+       ...|.++.. .-|=.+|+|.+-.+...|+.++|+|. +|+
T Consensus       202 d~~--~~~~~-------~~~l~~~~~-g~~ii~iSH~~~~~~~~d~v~~~~~~-~~~  247 (251)
T cd03273         202 DLS--HTQNI-------GRMIKTHFK-GSQFIVVSLKEGMFNNANVLFRTRFV-DGT  247 (251)
T ss_pred             CHH--HHHHH-------HHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEEEee-CCE
Confidence            555  55555       556777754 22334449999999999999999986 664

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00618 sbcc exonuclease SbcC

Probab=97.21  E-value=0.0063  Score=72.65  Aligned_cols=91  Identities=21%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHH-------hccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTI-------WKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPN  599 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAI-------QKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~  599 (926)
                      +.....+..|||||+-+++||+.+++       ...+|      ++.++          ||-..-+              
T Consensus       942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~------~~l~l----------DEp~~~L--------------  991 (1042)
T TIGR00618       942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVL------DSLFI----------DEGFGSL--------------  991 (1042)
T ss_pred             CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCC------CeEEe----------cCCCCCC--------------
Confidence            34557889999999999999999998       44566      67777          6655555              


Q ss_pred             CCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCC
Q psy834          600 SRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       600 ~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                                |..  .+..+       .+.|.++.....|=++|+|.+--..++..-+.|.-...|+
T Consensus       992 ----------D~~--~~~~~-------~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~~gS 1039 (1042)
T TIGR00618       992 ----------DED--SLDRA-------IGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTNAGS 1039 (1042)
T ss_pred             ----------CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECCCCc
Confidence                      433  45555       6778888765555455699999999998888877665554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.10  E-value=0.018  Score=69.45  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=70.5

Q ss_pred             ceEEEEeC--CCCcccccccCchhHHHHHHHHHHHHH-----hccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTP--QGRSYVGIQHLSGGERTLAALAMIFTI-----WKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNP  590 (926)
Q Consensus       518 GVeISVSP--PGKr~QsIQQLSGGEKSLVALALIFAI-----QKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~  590 (926)
                      |+.+.+..  .++....+..|||||+.+++||+.+++     ...+|      .+.++          ||--.-+     
T Consensus       930 ~l~~~~~d~~~~~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~------~~l~l----------DEp~~~l-----  988 (1047)
T PRK10246        930 ALELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRI------DSLFL----------DEGFGTL-----  988 (1047)
T ss_pred             CCceeeeehhccCCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCC------CEEEE----------eCCCCcC-----
Confidence            44444332  244557789999999999999999997     22223      45666          5533333     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCCCCcc
Q psy834          591 HSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTR  670 (926)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~~~~~  670 (926)
                                         |..  .+..+       .+.|..+....-|=.+|+|....+.||..-+-|+-..   -..+
T Consensus       989 -------------------D~~--~~~~~-------~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~~---g~g~ 1037 (1047)
T PRK10246        989 -------------------DSE--TLDTA-------LDALDALNASGKTIGVISHVEAMKERIPVQIKVKKIN---GLGY 1037 (1047)
T ss_pred             -------------------CHH--HHHHH-------HHHHHHHHHCCCEEEEEecHHHHHHhccceEEEEECC---CCCc
Confidence                               333  44555       6678888776556566699999999998888887622   2246


Q ss_pred             cccccc
Q psy834          671 SRVQSS  676 (926)
Q Consensus       671 ~~~~~~  676 (926)
                      |+|.|.
T Consensus      1038 S~v~~~ 1043 (1047)
T PRK10246       1038 SKLDSA 1043 (1047)
T ss_pred             ceeehh
Confidence            776653

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=96.99  E-value=0.001  Score=64.38  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             eCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          524 TPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRAN  603 (926)
Q Consensus       524 SPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~  603 (926)
                      ..|.++...+  ||||||..++||..++.+.+..     .++..+          ||.++-+                  
T Consensus        85 ~~~~~~~~~~--LS~Ge~~r~~Laral~~~~~~~-----p~llil----------DEp~~~L------------------  129 (178)
T cd03239          85 LVLQGKVEQI--LSGGEKSLSALALIFALQEIKP-----SPFYVL----------DEIDAAL------------------  129 (178)
T ss_pred             EecCCcCccc--CCHHHHHHHHHHHHHHHhcCCC-----CCEEEE----------ECCCCCC------------------
Confidence            3456666676  9999999999999999876666     578888          8888877                  


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceee
Q psy834          604 PNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQS  661 (926)
Q Consensus       604 ~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~  661 (926)
                            |..  +...+       .+.|.+++...-|=..++|.+-.+...|+.+.|+-
T Consensus       130 ------D~~--~~~~i-------~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~  172 (178)
T cd03239         130 ------DPT--NRRRV-------SDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF  172 (178)
T ss_pred             ------CHH--HHHHH-------HHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence                  544  44455       34677776653444455999999999999999986

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.86  E-value=0.0015  Score=64.75  Aligned_cols=92  Identities=22%  Similarity=0.255  Sum_probs=70.2

Q ss_pred             EEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          522 SCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSR  601 (926)
Q Consensus       522 SVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~  601 (926)
                      .+.-++.....+..||||||.+++||..|++.+++|     .++..+          ||..+.+                
T Consensus       114 ~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~-----p~ilil----------DEPt~gL----------------  162 (212)
T cd03274         114 IAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKP-----TPLYVM----------DEIDAAL----------------  162 (212)
T ss_pred             eeccccccccchhhcCHHHHHHHHHHHHHHhcccCC-----CCEEEE----------cCCCcCC----------------
Confidence            333355556678899999999999999999988877     678888          7877777                


Q ss_pred             CCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834          602 ANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA  662 (926)
Q Consensus       602 ~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a  662 (926)
                              |..  +...+       ++.|.++++. .|=.+|+|++..+...|+.++++-.
T Consensus       163 --------D~~--~~~~l-------~~~l~~~~~~-~~~iivs~~~~~~~~~d~v~~~~~~  205 (212)
T cd03274         163 --------DFR--NVSIV-------ANYIKERTKN-AQFIVISLRNNMFELADRLVGIYKT  205 (212)
T ss_pred             --------CHH--HHHHH-------HHHHHHHcCC-CEEEEEECcHHHHHhCCEEEEEEec
Confidence                    544  55666       7778888653 3444559999999999999988753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=96.78  E-value=0.0014  Score=66.71  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      ......|||||+.+++||+.+++..+++     .++..+          ||..+-+                        
T Consensus       165 ~~~~~~lS~G~~~r~~la~~~~~~~~~~-----p~vlll----------DEp~~~L------------------------  205 (276)
T cd03241         165 KPLAKIASGGELSRLMLALKAILARKDA-----VPTLIF----------DEIDTGI------------------------  205 (276)
T ss_pred             chhhhhcChhHHHHHHHHHHHHHhcCCC-----CCEEEE----------ECCccCC------------------------
Confidence            3446689999999999999888766666     789998          8866666                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeecCCC
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                      |..  ....+       .+.|.++.. ..|-++|+|++..+..+|+.+.+.....|+
T Consensus       206 d~~--~~~~l-------~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~~~~~~~  252 (276)
T cd03241         206 SGE--VAQAV-------GKKLKELSR-SHQVLCITHLPQVAAMADNHFLVEKEVEGG  252 (276)
T ss_pred             CHH--HHHHH-------HHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEEEecCCC
Confidence            444  45555       566777765 345556699999999999999998888775

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13514 AAA_27: AAA domain

Probab=96.57  E-value=0.036  Score=66.97  Aligned_cols=88  Identities=18%  Similarity=0.168  Sum_probs=58.9

Q ss_pred             EEEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCC--CceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          521 FSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQL--RPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNP  598 (926)
Q Consensus       521 ISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~--aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~  598 (926)
                      +.|...++....+..||+|=+=-+-|||=||+...--  .+-  -||..                               
T Consensus      1011 l~~~~~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~~--~~~~~lP~Il------------------------------- 1057 (1111)
T PF13514_consen 1011 LVVVRADGERVPVEELSRGTRDQLYLALRLALAELLA--EQGEPLPFIL------------------------------- 1057 (1111)
T ss_pred             ceEEecCCeEeeHHHhCHHHHHHHHHHHHHHHHHHHH--hCCCCCcEEe-------------------------------
Confidence            3444445567899999999999999999999876551  011  23322                               


Q ss_pred             CCCCCCCCCCCCCCCCch--hhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcc
Q psy834          599 NSRANPNPNPNSRANPNL--SRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLT  658 (926)
Q Consensus       599 ~~~~~~~~~~~~~a~~N~--~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~  658 (926)
                                 ||.--|.  .|.    ..++.+|.+|+....  .++ |||+-.+.-+...+|
T Consensus      1058 -----------DD~fvnfDd~R~----~~~l~~L~~ls~~~Q--VI~FTch~~l~~~a~~~~~ 1103 (1111)
T PF13514_consen 1058 -----------DDIFVNFDDERA----RAALELLAELSRRRQ--VIYFTCHEHLVELAREVFG 1103 (1111)
T ss_pred             -----------eCCccccCHHHH----HHHHHHHHHhccCCe--EEEEeccHHHHHHHHHhcC
Confidence                       2222222  233    234889999998644  555 999999988888765

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.48  E-value=0.055  Score=62.47  Aligned_cols=95  Identities=19%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             ceEEEEeC-CCCcccc-cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTP-QGRSYVG-IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN  595 (926)
Q Consensus       518 GVeISVSP-PGKr~Qs-IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~  595 (926)
                      -|.|.++. ||...++ .+-.||||=|++.|||-.++-....     .|..+.          ||||.=.-|+       
T Consensus       412 ~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~~~-----~ptlIF----------DEVD~GIsG~-------  469 (557)
T COG0497         412 KVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRKDD-----TPTLIF----------DEVDTGISGR-------  469 (557)
T ss_pred             eEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhccCC-----CCeEEE----------ecccCCCChH-------
Confidence            46777777 6777776 5789999999999999999988887     788888          9999988332       


Q ss_pred             CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceee
Q psy834          596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQS  661 (926)
Q Consensus       596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~  661 (926)
                                             -|++-   ...|..++.... =+.|||-|-.-++-|.-|-|.-
T Consensus       470 -----------------------~A~aV---g~~L~~Ls~~~Q-Vl~VTHlPQVAa~ad~H~~V~K  508 (557)
T COG0497         470 -----------------------VAQAV---GKKLRRLSEHHQ-VLCVTHLPQVAAMADTHFLVEK  508 (557)
T ss_pred             -----------------------HHHHH---HHHHHHHhcCce-EEEEecHHHHHhhhcceEEEEE
Confidence                                   12221   234777877554 2444999999999998887754

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.39  E-value=0.0032  Score=61.62  Aligned_cols=84  Identities=23%  Similarity=0.251  Sum_probs=62.5

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      ...+..||||||..++||..|+++.++|     .++..+          ||-.+-+                        
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~-----~~illl----------DEp~~~l------------------------  193 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDP-----APFYLF----------DEIDAAL------------------------  193 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------ECCccCC------------------------
Confidence            3567899999999999999999887777     689999          7766666                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeec
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAE  663 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE  663 (926)
                      |..  +..++       .+.|.++..  .+-+++ +|.+..+..+|+.+.+..-.
T Consensus       194 d~~--~~~~~-------~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~~l~~~~  237 (243)
T cd03272         194 DAQ--YRTAV-------ANMIKELSD--GAQFITTTFRPELLEVADKFYGVKFRN  237 (243)
T ss_pred             CHH--HHHHH-------HHHHHHHhC--CCEEEEEecCHHHHhhCCEEEEEEEEC
Confidence            433  44455       556677655  455666 88888777788888776543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PF13166 AAA_13: AAA domain

Probab=95.89  E-value=0.57  Score=53.33  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=25.9

Q ss_pred             cceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhc
Q psy834          517 AGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWK  554 (926)
Q Consensus       517 SGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQK  554 (926)
                      .|..|...  |+ ......||-|||+.+|||..||-..
T Consensus       485 ~~y~l~~~--~~-~~~~~~LSEGEk~~iAf~yFla~l~  519 (712)
T PF13166_consen  485 KGYKLQRK--GG-SKPAKILSEGEKRAIAFAYFLAELK  519 (712)
T ss_pred             CeEEEEEC--CC-CcccCccCHHHHHHHHHHHHHHHHh
Confidence            34455443  32 2344899999999999999999888

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=95.73  E-value=0.013  Score=55.40  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+|||||+.+++||.+++...+.+     .+++.+          ||...-+                        |..
T Consensus        75 ~~~lS~G~~~~~~la~~L~~~~~~~-----~~llll----------DEp~~gl------------------------d~~  115 (162)
T cd03227          75 RLQLSGGEKELSALALILALASLKP-----RPLYIL----------DEIDRGL------------------------DPR  115 (162)
T ss_pred             eeeccccHHHHHHHHHHHHhcCCCC-----CCEEEE----------eCCCCCC------------------------CHH
Confidence            3469999999999999999776666     689999          9988888                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCC
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQG  665 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G  665 (926)
                        +..++       ...|-++... .+.+++ ||.+-.....|+.+.+.....|
T Consensus       116 --~~~~l-------~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~l~~~~~~  159 (162)
T cd03227         116 --DGQAL-------AEAILEHLVK-GAQVIVITHLPELAELADKLIHIKKVITG  159 (162)
T ss_pred             --HHHHH-------HHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEEEEEEecc
Confidence              34444       4445555444 455555 9999999999999988877643

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.61  E-value=0.0099  Score=61.54  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||++||+|=-++-   +|      +|...          ||   ||-                    | -|
T Consensus       138 ~~p~eLSGGqqQRVAIARAL~~---~P------~iilA----------DE---PTg--------------------n-LD  174 (226)
T COG1136         138 KKPSELSGGQQQRVAIARALIN---NP------KIILA----------DE---PTG--------------------N-LD  174 (226)
T ss_pred             CCchhcCHHHHHHHHHHHHHhc---CC------CeEEe----------eC---ccc--------------------c-CC
Confidence            5578999999999999998886   77      34444          33   550                    0 03


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeE-eecChhhHHhhhhhccee
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSR-VQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~-v~~~~~t~sr~~~~~~v~  660 (926)
                      ..  |-...       -++|.++....++-.+ |||+|....++||.+-+.
T Consensus       175 ~~--t~~~V-------~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~  216 (226)
T COG1136         175 SK--TAKEV-------LELLRELNKERGKTIIMVTHDPELAKYADRVIELK  216 (226)
T ss_pred             hH--HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence            33  34444       6788889887664444 499999999999987654

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.48  E-value=0.015  Score=57.81  Aligned_cols=77  Identities=22%  Similarity=0.112  Sum_probs=54.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ...+||||||.+++||..++.   +|     . .|..+          ||-.+-+                        |
T Consensus       134 ~~~~LSgG~~qrv~laral~~---~p-----~~~llll----------DEPt~gL------------------------D  171 (226)
T cd03270         134 SAPTLSGGEAQRIRLATQIGS---GL-----TGVLYVL----------DEPSIGL------------------------H  171 (226)
T ss_pred             ccCcCCHHHHHHHHHHHHHHh---CC-----CCCEEEE----------eCCccCC------------------------C
Confidence            456899999999999999985   44     3 48888          6655444                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      ..  +...+       .+.|.++.....|-.+|+|+.-.+..+|+.+-+
T Consensus       172 ~~--~~~~l-------~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l  211 (226)
T cd03270         172 PR--DNDRL-------IETLKRLRDLGNTVLVVEHDEDTIRAADHVIDI  211 (226)
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEe
Confidence            33  44555       666777766666767779999877666665443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00606 rad50 rad50

Probab=95.46  E-value=0.25  Score=61.05  Aligned_cols=60  Identities=7%  Similarity=0.034  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy834          402 RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHL  461 (926)
Q Consensus       402 QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV  461 (926)
                      +|..+.++|.+-.-+.+-...+...|..-...||+.-.+-=-.-.+.||..+.++|+..+
T Consensus      1095 ~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~ 1154 (1311)
T TIGR00606      1095 QFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTY 1154 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455555555555555555555555555555555543333333335677888888887754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00064 recF recombination protein F; Reviewed

Probab=95.39  E-value=0.22  Score=53.52  Aligned_cols=158  Identities=10%  Similarity=0.016  Sum_probs=84.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhh
Q psy834          391 KMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYL  470 (926)
Q Consensus       391 KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L  470 (926)
                      .+.+.-..++.+|..+.+++..+.+....  ...+...+.+.++-.+-...=..+++.++..|.++|..|.... ..+-|
T Consensus       142 ~~~~~y~~~~~~y~k~lkqrn~lLk~~~~--~~l~~w~~~l~~~g~~I~~~R~~~~~~L~~~~~~~~~~l~~~~-~~~~l  218 (361)
T PRK00064        142 QIEPVYASALSQYERALKQRNALLKQADY--AWLDVWDEQLAELGAAIAAARLEYLERLAPLAAKTHQEISPEF-ELASL  218 (361)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceEE
Confidence            33344467888888888888887763111  1244444555555444444455677888889999999874211 01100


Q ss_pred             hh-cCCCCcccc----hhh----hhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHH
Q psy834          471 IV-SGWPKKKEN----LVI----VVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGER  541 (926)
Q Consensus       471 ~l-SgwP~GkGN----LvI----v~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEK  541 (926)
                      .. ++|+.....    +.-    ....++-        -|..       ..-|.-.-+.|.+  .|  ......+|+|||
T Consensus       219 ~y~~~~~~~~~~~~~~~~~~l~~~~~~d~~--------~g~T-------~~GpHrdDl~~~~--~g--~~~~~~~S~Gq~  279 (361)
T PRK00064        219 SYQSSVEDDAEKIEEDLLEALAKNRERDRA--------RGRT-------LVGPHRDDLRFRI--NG--LPAADFGSTGQQ  279 (361)
T ss_pred             EEeCCCCcchhHHHHHHHHHHHHhHHHHHh--------cCCC-------CCCcchhceEEEE--CC--CCHHHhCChHHH
Confidence            00 222200000    000    0000000        0000       0122222334444  23  356779999999


Q ss_pred             HHHHHHHHHHHhc-----cccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          542 TLAALAMIFTIWK-----LVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       542 SLVALALIFAIQK-----cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      .+++||+.+|-..     +..     .||..+          ||+-+=+
T Consensus       280 ~~~~lal~la~~~~~~~~~~~-----~~ilLl----------Dd~~s~L  313 (361)
T PRK00064        280 KLLLLALKLAEAELLKEETGE-----APILLL----------DDVASEL  313 (361)
T ss_pred             HHHHHHHHHHHHHHHHHhhCC-----CCEEEE----------ccchhhh
Confidence            9999999998532     344     599999          8877777

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.21  E-value=0.018  Score=55.58  Aligned_cols=75  Identities=19%  Similarity=0.031  Sum_probs=54.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       129 ~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  165 (213)
T cd03235         129 QIGELSGGQQQRVLLARALVQ---DP------DLLLL----------DEPFAGV------------------------DP  165 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            356899999999999998875   66      88888          7765555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +...+       .+.|.+++....|=.+|+|++-...+ .|+.+-
T Consensus       166 ~--~~~~l-------~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~  204 (213)
T cd03235         166 K--TQEDI-------YELLRELRREGMTILVVTHDLGLVLEYFDRVLL  204 (213)
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            4  45555       67788887654565566999877766 466553

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=95.16  E-value=0.014  Score=64.05  Aligned_cols=73  Identities=18%  Similarity=0.158  Sum_probs=56.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||++.|||=.|+-   +|      ||+.+          ||-.+-+                        |.. 
T Consensus       468 ~~LSgGqrQRiaLARall~---~~------~illL----------DEpts~L------------------------D~~-  503 (571)
T TIGR02203       468 VLLSGGQRQRLAIARALLK---DA------PILIL----------DEATSAL------------------------DNE-  503 (571)
T ss_pred             CcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CHH-
Confidence            4799999999999976652   44      89999          8877666                        555 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       |-.++       .+.|.++.. ..|..+|||++.....+|+.+-+
T Consensus       504 -~~~~i-------~~~L~~~~~-~~tiIiitH~~~~~~~~D~ii~l  540 (571)
T TIGR02203       504 -SERLV-------QAALERLMQ-GRTTLVIAHRLSTIEKADRIVVM  540 (571)
T ss_pred             -HHHHH-------HHHHHHHhC-CCEEEEEehhhHHHHhCCEEEEE
Confidence             55556       555666643 47888889999999999998766

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.13  E-value=0.016  Score=56.02  Aligned_cols=73  Identities=19%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      +|..+          ||--+-+                        |.. 
T Consensus       140 ~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~~-  175 (221)
T TIGR02211       140 SELSGGERQRVAIARALVN---QP------SLVLA----------DEPTGNL------------------------DNN-  175 (221)
T ss_pred             hhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence            5899999999999999986   66      78888          7766655                        544 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLT  658 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~  658 (926)
                       +...+       .+.|.++... ..|=.+|+|++-....+|+.+-
T Consensus       176 -~~~~l-------~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~  213 (221)
T TIGR02211       176 -NAKII-------FDLMLELNRELNTSFLVVTHDLELAKKLDRVLE  213 (221)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEE
Confidence             55566       5667777654 4455566999887776766443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=94.89  E-value=0.028  Score=55.40  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=60.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHh--ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIW--KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQ--KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+..||||||.+++|||.+||-  .+..     .++..+          ||..+.+                        
T Consensus       112 ~~~~LS~G~~~~~~la~rlala~al~~~-----p~illl----------DEP~~~L------------------------  152 (204)
T cd03240         112 MRGRCSGGEKVLASLIIRLALAETFGSN-----CGILAL----------DEPTTNL------------------------  152 (204)
T ss_pred             CccccCccHHHHHHHHHHHHHHHHhccC-----CCEEEE----------cCCcccc------------------------
Confidence            5689999999999887655543  2334     588888          8877777                        


Q ss_pred             CCCCCchh-hhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcceeeec
Q psy834          610 SRANPNLS-RRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTIQSAE  663 (926)
Q Consensus       610 ~~a~~N~~-R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v~~aE  663 (926)
                      |..  +.. ++       +..|.++... .-|=++|+|++......|+.+.+...-
T Consensus       153 D~~--~~~~~l-------~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~  199 (204)
T cd03240         153 DEE--NIEESL-------AEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG  199 (204)
T ss_pred             CHH--HHHHHH-------HHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence            544  556 66       7778888765 345566699998888888877665443

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.76  E-value=0.025  Score=54.48  Aligned_cols=73  Identities=19%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||..++||..|+.   +|      ++..+          ||-.+-+                        |-. 
T Consensus       136 ~~LS~G~~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------D~~-  171 (214)
T TIGR02673       136 EQLSGGEQQRVAIARAIVN---SP------PLLLA----------DEPTGNL------------------------DPD-  171 (214)
T ss_pred             hhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence            5899999999999999885   66      88888          7765555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                       +...+       .+.|.++.....|=.+|+|++-.... +|+.+-
T Consensus       172 -~~~~l-------~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~  209 (214)
T TIGR02673       172 -LSERI-------LDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII  209 (214)
T ss_pred             -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence             44555       66788876655666666999887766 466543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=94.71  E-value=0.048  Score=61.82  Aligned_cols=71  Identities=6%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQLNKEQQ-RLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY  457 (926)
Q Consensus       380 dleeL~~eL~~KLk~vnkKAIE-QYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF  457 (926)
                      .+..+..+|. + .++|+.|++ +|+++.++++.|..+.++|..++..++.+|..     .++|..+|+.|+.+|.+--
T Consensus       456 ~i~~l~~~L~-~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~Ae  527 (569)
T PRK04778        456 EIEALAEELE-E-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEALNEAE  527 (569)
T ss_pred             HHHHHHHHhc-c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHHHH
Confidence            3455555555 4 556699999 99999999999999999999999999999998     9999999999999998743

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=94.58  E-value=0.019  Score=58.65  Aligned_cols=76  Identities=17%  Similarity=0.058  Sum_probs=56.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+.+                        |.
T Consensus       136 ~~~~LS~G~~qrv~laral~~---~p------~illl----------DEPts~L------------------------D~  172 (255)
T cd03236         136 NIDQLSGGELQRVAIAAALAR---DA------DFYFF----------DEPSSYL------------------------DI  172 (255)
T ss_pred             ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCCCCC------------------------CH
Confidence            446899999999999999986   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       +.+|.++.....|-.+|+|..-...+ +|+.+-+
T Consensus       173 ~--~~~~l-------~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l  212 (255)
T cd03236         173 K--QRLNA-------ARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL  212 (255)
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            4  55566       78888887765666666998876654 6766544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.48  E-value=0.038  Score=53.17  Aligned_cols=74  Identities=15%  Similarity=0.080  Sum_probs=51.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       132 ~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~  168 (211)
T cd03225         132 PFTLSGGQKQRVAIAGVLAM---DP------DILLL----------DEPTAGL------------------------DPA  168 (211)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            46899999999999998875   66      78888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       .+.|.++....-|=.+++|++..... +|+.+-
T Consensus       169 --~~~~~-------~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~  206 (211)
T cd03225         169 --GRREL-------LELLKKLKAEGKTIIIVTHDLDLLLELADRVIV  206 (211)
T ss_pred             --HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence              44555       56677777654454555999887766 566543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.47  E-value=0.036  Score=57.75  Aligned_cols=78  Identities=15%  Similarity=0.040  Sum_probs=55.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..++-....|      .++.+          ||-.+-+                        |
T Consensus       165 ~~~~~LSgGe~QRl~LAraL~~~~~~p------~lllL----------DEPtsgL------------------------D  204 (261)
T cd03271         165 QPATTLSGGEAQRIKLAKELSKRSTGK------TLYIL----------DEPTTGL------------------------H  204 (261)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCCC------cEEEE----------ECCCCCC------------------------C
Confidence            345689999999999999887532223      57777          6654444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~  657 (926)
                      ..  +...+       .+.|.++.....|-.+|+|++-.....|+.+
T Consensus       205 ~~--~~~~l-------~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii  242 (261)
T cd03271         205 FH--DVKKL-------LEVLQRLVDKGNTVVVIEHNLDVIKCADWII  242 (261)
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence            34  45556       5677888777788888899998777666543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=94.41  E-value=0.038  Score=54.63  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       141 ~~~~LS~Gq~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D~  177 (250)
T PRK11264        141 YPRRLSGGQQQRVAIARALAM---RP------EVILF----------DEPTSAL------------------------DP  177 (250)
T ss_pred             ChhhCChHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            457999999999999999985   66      78888          7776666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.....|=.+++|+.-.... +|+.+-+
T Consensus       178 ~--~~~~l-------~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l  217 (250)
T PRK11264        178 E--LVGEV-------LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM  217 (250)
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            4  55556       66778887655565566999877655 5766544

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.41  E-value=0.034  Score=53.70  Aligned_cols=75  Identities=17%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |..
T Consensus       128 ~~~LSgG~~qrl~la~al~~---~p------~~lll----------DEPt~~L------------------------D~~  164 (213)
T cd03259         128 PHELSGGQQQRVALARALAR---EP------SLLLL----------DEPLSAL------------------------DAK  164 (213)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            35899999999999998885   66      88888          7766666                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+++|++-...+ .|+.+-+
T Consensus       165 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  204 (213)
T cd03259         165 --LREEL-------REELKELQRELGITTIYVTHDQEEALALADRIAVM  204 (213)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence              55555       6777787654 4455555998875544 5655443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.39  E-value=0.038  Score=58.63  Aligned_cols=85  Identities=15%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||-.++.   +|      +|..+          ||..+-+                        |-
T Consensus       222 ~~~~LSgGqkqRl~LARAl~~---~p------~IlLL----------DEPts~L------------------------D~  258 (329)
T PRK14257        222 AGNALSGGQQQRLCIARAIAL---EP------EVLLM----------DEPTSAL------------------------DP  258 (329)
T ss_pred             CcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456999999999999988865   66      78888          7766666                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce---eeecCCCCCc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI---QSAEQGSPNT  669 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v---~~aE~G~~~~  669 (926)
                      .  +...+       ++.|.++.. .-|..+|+|+.-+... .|+.+-+   ...|.|.|..
T Consensus       259 ~--~~~~i-------~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~  310 (329)
T PRK14257        259 I--ATAKI-------EELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT  310 (329)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            3  44555       667777776 3788888999999877 7887655   3456666543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=94.39  E-value=0.035  Score=53.48  Aligned_cols=75  Identities=9%  Similarity=-0.028  Sum_probs=53.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       124 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  160 (208)
T cd03268         124 VKGFSLGMKQRLGIALALLG---NP------DLLIL----------DEPTNGL------------------------DPD  160 (208)
T ss_pred             HhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCcccC------------------------CHH
Confidence            56899999999999999886   56      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       ...|.++.....|=.+|+|++-.... +|+.+-+
T Consensus       161 --~~~~l-------~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l  199 (208)
T cd03268         161 --GIKEL-------RELILSLRDQGITVLISSHLLSEIQKVADRIGII  199 (208)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence              44555       56777877644555555999876654 5665544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=94.35  E-value=0.042  Score=54.06  Aligned_cols=83  Identities=14%  Similarity=0.249  Sum_probs=58.6

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP  606 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~  606 (926)
                      ....+.+..||||||.+++||..+|++.+..     .+|+.+          ||..+=+                     
T Consensus       101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~-----p~illl----------DEP~~gl---------------------  144 (198)
T cd03276         101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVME-----SPFRCL----------DEFDVFM---------------------  144 (198)
T ss_pred             cccCCcccccChhHHHHHHHHHHHHHhcccC-----CCEEEe----------cCccccc---------------------
Confidence            3456788999999999999999999887666     699999          8866666                     


Q ss_pred             CCCCCCCCchhhhhhcccCCCCChhhhccC-CC--ceeEeecChhhHHhhhhhc
Q psy834          607 NPNSRANPNLSRRAQANNSAQNPLPEVSSS-PN--TRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~--tr~~v~~~~~t~sr~~~~~  657 (926)
                         |..  +...+       .+.|.++... ..  |=++++|+.....++|+..
T Consensus       145 ---D~~--~~~~~-------~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~  186 (198)
T cd03276         145 ---DMV--NRKIS-------TDLLVKEAKKQPGRQFIFITPQDISGLASSDDVK  186 (198)
T ss_pred             ---CHH--HHHHH-------HHHHHHHHhcCCCcEEEEEECCccccccccccee
Confidence               444  45555       4456666543 12  4444488887777776443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=94.25  E-value=0.034  Score=54.72  Aligned_cols=73  Identities=22%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |..
T Consensus       143 ~~~LSgG~~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------D~~  179 (233)
T PRK11629        143 PSELSGGERQRVAIARALVN---NP------RLVLA----------DEPTGNL------------------------DAR  179 (233)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH
Confidence            35799999999999998886   66      88999          8866656                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~  657 (926)
                        +...+       .+.|.++... .-|=.+|+|++-...++++.+
T Consensus       180 --~~~~l-------~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~  216 (233)
T PRK11629        180 --NADSI-------FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL  216 (233)
T ss_pred             --HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEE
Confidence              44555       6678887653 456566699998888887543

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.24  E-value=0.037  Score=53.32  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       125 ~~~~LS~G~~qrl~la~al~~---~p------~~lll----------DEP~~~L------------------------D~  161 (210)
T cd03269         125 RVEELSKGNQQKVQFIAAVIH---DP------ELLIL----------DEPFSGL------------------------DP  161 (210)
T ss_pred             cHhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            346899999999999999887   56      78888          7765555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.....|=.+++|.+..... .|+.+-+
T Consensus       162 ~--~~~~~-------~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  201 (210)
T cd03269         162 V--NVELL-------KDVIRELARAGKTVILSTHQMELVEELCDRVLLL  201 (210)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence            4  44455       55677776554455555999876654 5665443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.22  E-value=0.037  Score=53.52  Aligned_cols=73  Identities=16%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       138 ~~~LS~G~~qrv~la~al~~---~p------~lllL----------DEP~~~L------------------------D~~  174 (218)
T cd03255         138 PSELSGGQQQRVAIARALAN---DP------KIILA----------DEPTGNL------------------------DSE  174 (218)
T ss_pred             hhhcCHHHHHHHHHHHHHcc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            35899999999999988876   66      78888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~  657 (926)
                        +...+       .+.|.++..+ .-|=.+|+|++-...-+|+.+
T Consensus       175 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~  211 (218)
T cd03255         175 --TGKEV-------MELLRELNKEAGTTIVVVTHDPELAEYADRII  211 (218)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCeEEEEECCHHHHhhhcEEE
Confidence              55556       6678888763 445555599886655555543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.19  E-value=0.04  Score=53.31  Aligned_cols=72  Identities=18%  Similarity=0.093  Sum_probs=51.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.. 
T Consensus       137 ~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~-  172 (216)
T TIGR00960       137 MQLSGGEQQRVAIARAIVH---KP------PLLLA----------DEPTGNL------------------------DPE-  172 (216)
T ss_pred             hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence            5899999999999999987   66      78888          7755555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                       +...+       .+.|.++.....|=.+|+|++-.... .|+.+
T Consensus       173 -~~~~l-------~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~  209 (216)
T TIGR00960       173 -LSRDI-------MRLFEEFNRRGTTVLVATHDINLVETYRHRTL  209 (216)
T ss_pred             -HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence             45555       56677776554454555999877665 36544

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=94.18  E-value=0.044  Score=54.04  Aligned_cols=74  Identities=15%  Similarity=0.101  Sum_probs=55.0

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.. 
T Consensus       135 ~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~~L------------------------D~~-  170 (240)
T PRK09493        135 SELSGGQQQRVAIARALAV---KP------KLMLF----------DEPTSAL------------------------DPE-  170 (240)
T ss_pred             hhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence            6899999999999999985   66      78888          7776666                        555 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                       +...+       .+.|.++.....|=.+++|+.-...+ +|+.+-+
T Consensus       171 -~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  209 (240)
T PRK09493        171 -LRHEV-------LKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI  209 (240)
T ss_pred             -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence             56666       67788887654555555999887655 5665544

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=94.16  E-value=0.044  Score=53.34  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       147 ~~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D~~  183 (224)
T TIGR02324       147 PATFSGGEQQRVNIARGFIA---DY------PILLL----------DEPTASL------------------------DAA  183 (224)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            56899999999999998874   56      68888          7765555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhccee
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTIQ  660 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v~  660 (926)
                        +...+       .+.|.++....-|=.+|+|++.... -+|+.+.+|
T Consensus       184 --~~~~l-------~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       184 --NRQVV-------VELIAEAKARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             --HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence              45555       6778888665456556699976554 467666554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.14  E-value=0.038  Score=53.45  Aligned_cols=76  Identities=11%  Similarity=0.014  Sum_probs=54.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |.
T Consensus       133 ~~~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~  169 (218)
T cd03266         133 RVGGFSTGMRQKVAIARALVH---DP------PVLLL----------DEPTTGL------------------------DV  169 (218)
T ss_pred             hhhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCcCC------------------------CH
Confidence            456899999999999999886   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.....|=.+|+|++-.... .|+.+-+
T Consensus       170 ~--~~~~l-------~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l  209 (218)
T cd03266         170 M--ATRAL-------REFIRQLRALGKCILFSTHIMQEVERLCDRVVVL  209 (218)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            4  55556       66788876655566666999876543 5665543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.11  E-value=0.039  Score=54.24  Aligned_cols=75  Identities=16%  Similarity=0.056  Sum_probs=52.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-.
T Consensus       134 ~~~LSgG~~qrv~ia~al~~---~p------~llll----------DEPt~~L------------------------D~~  170 (235)
T cd03261         134 PAELSGGMKKRVALARALAL---DP------ELLLY----------DEPTAGL------------------------DPI  170 (235)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CHH
Confidence            35899999999999999886   66      88888          7755555                        443


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... ..|=.+|+|++-.... +|+.+-+
T Consensus       171 --~~~~l-------~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l  210 (235)
T cd03261         171 --ASGVI-------DDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL  210 (235)
T ss_pred             --HHHHH-------HHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence              45555       5678888764 4455555999876544 6766544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.11  E-value=0.034  Score=53.78  Aligned_cols=69  Identities=16%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-.
T Consensus       127 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  163 (204)
T PRK13538        127 VRQLSAGQQRRVALARLWLT---RA------PLWIL----------DEPFTAI------------------------DKQ  163 (204)
T ss_pred             hhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            56899999999999998887   66      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV  653 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~  653 (926)
                        +...+       ...|.++.....|=.+|+|++....+.
T Consensus       164 --~~~~l-------~~~l~~~~~~~~tiii~sh~~~~i~~~  195 (204)
T PRK13538        164 --GVARL-------EALLAQHAEQGGMVILTTHQDLPVASD  195 (204)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEecChhhhccC
Confidence              55666       677888766555655569998877654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.10  E-value=0.048  Score=60.48  Aligned_cols=72  Identities=17%  Similarity=0.030  Sum_probs=53.3

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||+++|||=.|.=   +|      ||..+          ||--+-+                        |..  
T Consensus       485 ~LSGGQrQRialARAll~---~~------~IliL----------DE~TSaL------------------------D~~--  519 (588)
T PRK11174        485 GLSVGQAQRLALARALLQ---PC------QLLLL----------DEPTASL------------------------DAH--  519 (588)
T ss_pred             CCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH--
Confidence            699999999999864432   44      89999          8876666                        544  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |-.+.       .+.|.++. ...|..+|+|++-+...+|+.+-+
T Consensus       520 te~~i-------~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl  556 (588)
T PRK11174        520 SEQLV-------MQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVM  556 (588)
T ss_pred             HHHHH-------HHHHHHHh-CCCEEEEEecChHHHHhCCEEEEE
Confidence            44444       34455554 347888889999999999998766

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.05  E-value=0.042  Score=54.08  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=53.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-.
T Consensus       135 ~~~LS~G~~qrl~la~al~~---~p------~illl----------DEPt~~L------------------------D~~  171 (237)
T PRK11614        135 AGTMSGGEQQMLAIGRALMS---QP------RLLLL----------DEPSLGL------------------------API  171 (237)
T ss_pred             hhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------cCccccC------------------------CHH
Confidence            34799999999999999987   66      88888          7766666                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChh-hHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT-TRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~-t~sr~~~~~~v  659 (926)
                        +...+       ...|.++.....|=.+++|++- ...-.|+.+-+
T Consensus       172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (237)
T PRK11614        172 --IIQQI-------FDTIEQLREQGMTIFLVEQNANQALKLADRGYVL  210 (237)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence              45555       5567777766667666699976 45556776544

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.01  E-value=0.044  Score=52.41  Aligned_cols=71  Identities=25%  Similarity=0.229  Sum_probs=51.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.+
T Consensus       132 ~~~lS~G~~qr~~laral~~---~p------~llll----------DEPt~~L------------------------D~~  168 (206)
T TIGR03608       132 IYELSGGEQQRVALARAILK---DP------PLILA----------DEPTGSL------------------------DPK  168 (206)
T ss_pred             hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcCCC------------------------CHH
Confidence            46799999999999998886   66      88888          8877766                        655


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS  655 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~  655 (926)
                        +...+       ...|.++....-|-.+++|++-....+|+
T Consensus       169 --~~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~d~  202 (206)
T TIGR03608       169 --NRDEV-------LDLLLELNDEGKTIIIVTHDPEVAKQADR  202 (206)
T ss_pred             --HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHhhcCE
Confidence              66666       67788877654455566998865544443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=94.01  E-value=0.04  Score=55.76  Aligned_cols=75  Identities=13%  Similarity=0.047  Sum_probs=55.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |..
T Consensus       147 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~  183 (267)
T PRK15112        147 PHMLAPGQKQRLGLARALIL---RP------KVIIA----------DEALASL------------------------DMS  183 (267)
T ss_pred             chhcCHHHHHHHHHHHHHHh---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            45899999999999999986   56      88888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus       184 --~~~~l-------~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  223 (267)
T PRK15112        184 --MRSQL-------INLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM  223 (267)
T ss_pred             --HHHHH-------HHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence              55566       7778888764 4455555999877766 5766554

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=93.93  E-value=0.049  Score=53.75  Aligned_cols=74  Identities=15%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |-. 
T Consensus       140 ~~LS~G~~qrv~laral~~---~p------~llil----------DEPt~~L------------------------D~~-  175 (242)
T PRK11124        140 LHLSGGQQQRVAIARALMM---EP------QVLLF----------DEPTAAL------------------------DPE-  175 (242)
T ss_pred             hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCcC------------------------CHH-
Confidence            5899999999999998887   66      78888          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                       +...+       ...|.++.....|=.+|+|++-.... +|+.+-+
T Consensus       176 -~~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l  214 (242)
T PRK11124        176 -ITAQI-------VSIIRELAETGITQVIVTHEVEVARKTASRVVYM  214 (242)
T ss_pred             -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence             45555       55677776555554555999887655 6766554

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.92  E-value=0.053  Score=52.26  Aligned_cols=74  Identities=16%  Similarity=0.106  Sum_probs=51.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |..
T Consensus       124 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~  160 (205)
T cd03226         124 PLSLSGGQKQRLAIAAALLS---GK------DLLIF----------DEPTSGL------------------------DYK  160 (205)
T ss_pred             chhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            35899999999999998886   66      78888          7755555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       .+.|.++.....|=.+++|++-...+ +|+.+-
T Consensus       161 --~~~~l-------~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~  198 (205)
T cd03226         161 --NMERV-------GELIRELAAQGKAVIVITHDYEFLAKVCDRVLL  198 (205)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence              44455       56777876655565666999876654 566543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.90  E-value=0.048  Score=56.15  Aligned_cols=76  Identities=14%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.++|||..|+.   +|      ++..+          ||..+-+                        |.
T Consensus       141 ~~~~LSgGqkqrvaiA~aL~~---~p------~illL----------DEPt~gL------------------------D~  177 (288)
T PRK13643        141 SPFELSGGQMRRVAIAGILAM---EP------EVLVL----------DEPTAGL------------------------DP  177 (288)
T ss_pred             CcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCccCC------------------------CH
Confidence            456899999999999999988   77      78888          7766655                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       -+.|.++....-|=.+|+|+.--..+ .|+.+-+
T Consensus       178 ~--~~~~l-------~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l  217 (288)
T PRK13643        178 K--ARIEM-------MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL  217 (288)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            3  33344       45667776655576677999876654 6766443

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.86  E-value=0.053  Score=52.90  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       139 ~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  175 (227)
T cd03260         139 ALGLSGGQQQRLCLARALAN---EP------EVLLL----------DEPTSAL------------------------DPI  175 (227)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            46899999999999988886   66      88999          7766666                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .|=.+++|++-.... .|+.+-+
T Consensus       176 --~~~~l-------~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l  213 (227)
T cd03260         176 --STAKI-------EELIAELKKE-YTIVIVTHNMQQAARVADRTAFL  213 (227)
T ss_pred             --HHHHH-------HHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEE
Confidence              45555       6778888775 554555999876543 6766544

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.80  E-value=0.05  Score=53.27  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       138 ~~~LS~G~~qrv~la~al~~---~p------~lllL----------DEP~~~L------------------------D~~  174 (233)
T cd03258         138 PAQLSGGQKQRVGIARALAN---NP------KVLLC----------DEATSAL------------------------DPE  174 (233)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCCcC------------------------CHH
Confidence            36899999999999998875   66      78888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+++|++-...+ +|+.+-+
T Consensus       175 --~~~~l-------~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  214 (233)
T cd03258         175 --TTQSI-------LALLRDINRELGLTIVLITHEMEVVKRICDRVAVM  214 (233)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              45555       6678888765 4455555999877665 5776554

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=93.76  E-value=0.065  Score=52.62  Aligned_cols=75  Identities=13%  Similarity=0.074  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..|+.   +|      .+..+          ||-.+-+                        |.
T Consensus       135 ~~~~LSgG~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  171 (237)
T cd03252         135 QGAGLSGGQRQRIAIARALIH---NP------RILIF----------DEATSAL------------------------DY  171 (237)
T ss_pred             CCCcCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999999885   67      67888          6655555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       -+.|.++.. .-|=.+++|++-.....|+.+-+
T Consensus       172 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~d~v~~l  209 (237)
T cd03252         172 E--SEHAI-------MRNMHDICA-GRTVIIIAHRLSTVKNADRIIVM  209 (237)
T ss_pred             H--HHHHH-------HHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEE
Confidence            4  44555       455666653 34544459999888777765544

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=93.74  E-value=0.084  Score=50.98  Aligned_cols=75  Identities=20%  Similarity=0.100  Sum_probs=53.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..|||||+.+++||..|+.   +|      +|..+          ||-.+.+                        |.
T Consensus       122 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  158 (207)
T cd03369         122 GGLNLSQGQRQLLCLARALLK---RP------RVLVL----------DEATASI------------------------DY  158 (207)
T ss_pred             CCCcCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccC------------------------CH
Confidence            467899999999999999975   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  ...++       .++|.++.. .-|-.+++|++-.....|+.+-+
T Consensus       159 ~--~~~~l-------~~~l~~~~~-~~tiii~th~~~~~~~~d~v~~l  196 (207)
T cd03369         159 A--TDALI-------QKTIREEFT-NSTILTIAHRLRTIIDYDKILVM  196 (207)
T ss_pred             H--HHHHH-------HHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEE
Confidence            3  44455       456766643 34555569998776667777655

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.73  E-value=0.05  Score=53.25  Aligned_cols=76  Identities=14%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       141 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  177 (241)
T cd03256         141 RADQLSGGQQQRVAIARALMQ---QP------KLILA----------DEPVASL------------------------DP  177 (241)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence            456899999999999998886   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      .  +...+       .+.|.++... ..|=.+|+|++-... -+|+.+-+
T Consensus       178 ~--~~~~l-------~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l  218 (241)
T cd03256         178 A--SSRQV-------MDLLKRINREEGITVIVSLHQVDLAREYADRIVGL  218 (241)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  55555       6678887754 445455599987766 46666544

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.72  E-value=0.065  Score=52.32  Aligned_cols=76  Identities=13%  Similarity=0.036  Sum_probs=52.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       130 ~~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~  166 (232)
T cd03218         130 KASSLSGGERRRVEIARALAT---NP------KFLLL----------DEPFAGV------------------------DP  166 (232)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CH
Confidence            346899999999999999987   66      78888          6655444                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ..+|.++.....|=.+++|++-...+ +|+.+-+
T Consensus       167 ~--~~~~~-------~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  206 (232)
T cd03218         167 I--AVQDI-------QKIIKILKDRGIGVLITDHNVRETLSITDRAYII  206 (232)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  44555       56788887655565555999865444 5665444

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.72  E-value=0.062  Score=51.71  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=51.4

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.. 
T Consensus       135 ~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~-  170 (214)
T cd03292         135 AELSGGEQQRVAIARAIVN---SP------TILIA----------DEPTGNL------------------------DPD-  170 (214)
T ss_pred             hhcCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence            4899999999999999886   66      78888          7755555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                       +...+       .+.|.++....-|=.+|+|++-.... +|+.+-
T Consensus       171 -~~~~~-------~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~  208 (214)
T cd03292         171 -TTWEI-------MNLLKKINKAGTTVVVATHAKELVDTTRHRVIA  208 (214)
T ss_pred             -HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence             45555       66777876554555555999876655 466543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=93.72  E-value=0.063  Score=53.72  Aligned_cols=76  Identities=12%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.
T Consensus       149 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  185 (257)
T PRK10619        149 YPVHLSGGQQQRVSIARALAM---EP------EVLLF----------DEPTSAL------------------------DP  185 (257)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999998887   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=++|+|++-.... +|+.+-+
T Consensus       186 ~--~~~~l-------~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l  225 (257)
T PRK10619        186 E--LVGEV-------LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  225 (257)
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            4  55555       56778887655566666999987776 5777555

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.72  E-value=0.04  Score=53.19  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.. 
T Consensus       126 ~~LS~G~~~rv~laral~~---~p------~~lil----------DEP~~~L------------------------D~~-  161 (200)
T PRK13540        126 GLLSSGQKRQVALLRLWMS---KA------KLWLL----------DEPLVAL------------------------DEL-  161 (200)
T ss_pred             hhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccc------------------------CHH-
Confidence            4799999999999999987   66      78888          7766666                        555 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhh
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQ  654 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~  654 (926)
                       +...+       ++.|.++.....|=.+++|.+..-..+|
T Consensus       162 -~~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~d  194 (200)
T PRK13540        162 -SLLTI-------ITKIQEHRAKGGAVLLTSHQDLPLNKAD  194 (200)
T ss_pred             -HHHHH-------HHHHHHHHHcCCEEEEEeCCchhccccc
Confidence             56666       7778887665556455589887766655

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=93.68  E-value=0.048  Score=52.78  Aligned_cols=68  Identities=18%  Similarity=0.149  Sum_probs=50.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       123 ~~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D~~  159 (201)
T cd03231         123 VAQLSAGQQRRVALARLLLS---GR------PLWIL----------DEPTTAL------------------------DKA  159 (201)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH
Confidence            46899999999999999886   66      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR  652 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr  652 (926)
                        +...+       .+.|.++.....|=.+|+|++..-..
T Consensus       160 --~~~~l-------~~~l~~~~~~g~tiii~sH~~~~~~~  190 (201)
T cd03231         160 --GVARF-------AEAMAGHCARGGMVVLTTHQDLGLSE  190 (201)
T ss_pred             --HHHHH-------HHHHHHHHhCCCEEEEEecCchhhhh
Confidence              55556       67788877655665556998875443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.67  E-value=0.056  Score=54.72  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=53.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |-
T Consensus       133 ~~~~LSgG~~qrl~laraL~~---~p------~lllL----------DEPt~~L------------------------D~  169 (271)
T PRK13638        133 PIQCLSHGQKKRVAIAGALVL---QA------RYLLL----------DEPTAGL------------------------DP  169 (271)
T ss_pred             CchhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            356899999999999999886   66      88888          7765555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus       170 ~--~~~~l-------~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l  209 (271)
T PRK13638        170 A--GRTQM-------IAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL  209 (271)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  44555       66788877544454555898876654 6766554

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=93.66  E-value=0.063  Score=51.14  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus        93 ~~~~~LS~G~~qrl~laral~~---~p------~llll----------DEP~~~L------------------------D  129 (180)
T cd03214          93 RPFNELSGGERQRVLLARALAQ---EP------PILLL----------DEPTSHL------------------------D  129 (180)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------C
Confidence            4578999999999999988887   66      78888          7766666                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      ..  +...+       .+.|.++... ..|=.+++|++.... -.|+.+-+
T Consensus       130 ~~--~~~~~-------~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  171 (180)
T cd03214         130 IA--HQIEL-------LELLRRLARERGKTVVMVLHDLNLAARYADRVILL  171 (180)
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  56666       6778888765 446666699988754 45766543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.65  E-value=0.058  Score=51.86  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |-.
T Consensus       133 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~~L------------------------D~~  169 (213)
T cd03262         133 PAQLSGGQQQRVAIARALAM---NP------KVMLF----------DEPTSAL------------------------DPE  169 (213)
T ss_pred             ccccCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH
Confidence            36899999999999998887   66      78888          7765555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       ...|.++.....|=.+++|++..... +|+.+-
T Consensus       170 --~~~~l-------~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~  207 (213)
T cd03262         170 --LVGEV-------LDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF  207 (213)
T ss_pred             --HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence              45555       66788887644454444999877655 565543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=93.63  E-value=0.056  Score=52.32  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=54.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |..
T Consensus       143 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~  179 (228)
T cd03257         143 PHELSGGQRQRVAIARALAL---NP------KLLIA----------DEPTSAL------------------------DVS  179 (228)
T ss_pred             chhcCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCCCC------------------------CHH
Confidence            35899999999999998876   66      88888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.+++.. ..|=.+++|++..+.. +|+.+-+
T Consensus       180 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  219 (228)
T cd03257         180 --VQAQI-------LDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM  219 (228)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence              55666       6778888765 4565666999877663 6766543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.63  E-value=0.056  Score=52.63  Aligned_cols=73  Identities=10%  Similarity=-0.029  Sum_probs=52.4

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||--+-+                        |..
T Consensus       129 ~~~LS~G~~qr~~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  165 (220)
T cd03265         129 VKTYSGGMRRRLEIARSLVH---RP------EVLFL----------DEPTIGL------------------------DPQ  165 (220)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCccCC------------------------CHH
Confidence            46899999999999998886   66      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                        +...+       .+.|.++... ..|=.+++|+.-.... +|+.+
T Consensus       166 --~~~~l-------~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~  203 (220)
T cd03265         166 --TRAHV-------WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA  203 (220)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence              45555       6778888765 3454555998876554 56654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.59  E-value=0.061  Score=54.57  Aligned_cols=77  Identities=14%  Similarity=0.038  Sum_probs=55.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||-.+.+                        |
T Consensus       141 ~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D  177 (280)
T PRK13649        141 KNPFELSGGQMRRVAIAGILAM---EP------KILVL----------DEPTAGL------------------------D  177 (280)
T ss_pred             CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------C
Confidence            3467899999999999999887   66      78888          8877766                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       ...|.++....-|=.+|+|++-.... .|+.+-+
T Consensus       178 ~~--~~~~l-------~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  218 (280)
T PRK13649        178 PK--GRKEL-------MTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL  218 (280)
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence            44  55555       66777776554555566999876654 5665544

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=93.58  E-value=0.065  Score=53.19  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=54.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |
T Consensus       140 ~~~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D  176 (247)
T TIGR00972       140 DSALGLSGGQQQRLCIARALAV---EP------EVLLL----------DEPTSAL------------------------D  176 (247)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence            3456899999999999999985   66      77888          6655555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++... .|-.+|+|++-...+ +|+.+-+
T Consensus       177 ~~--~~~~l-------~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l  216 (247)
T TIGR00972       177 PI--ATGKI-------EELIQELKKK-YTIVIVTHNMQQAARISDRTAFF  216 (247)
T ss_pred             HH--HHHHH-------HHHHHHHHhc-CeEEEEecCHHHHHHhCCEEEEE
Confidence            33  44455       5667777664 566777999987655 6776544

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=93.57  E-value=0.067  Score=52.70  Aligned_cols=71  Identities=11%  Similarity=0.018  Sum_probs=53.0

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||.+++||..++.   +|      +|..+          ||-.+-+                        |..  
T Consensus       145 ~LS~G~~qrv~laral~~---~p------~illL----------DEPt~~L------------------------D~~--  179 (248)
T PRK09580        145 GFSGGEKKRNDILQMAVL---EP------ELCIL----------DESDSGL------------------------DID--  179 (248)
T ss_pred             CCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CHH--
Confidence            799999999999998887   56      88999          8876666                        555  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhc
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSL  657 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~  657 (926)
                      ....+       .+.|.++.....|=.+++|++.....  .|+.+
T Consensus       180 ~~~~l-------~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~  217 (248)
T PRK09580        180 ALKIV-------ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH  217 (248)
T ss_pred             HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE
Confidence            55666       66777887655565666999877666  36543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.57  E-value=0.028  Score=57.92  Aligned_cols=77  Identities=13%  Similarity=0.026  Sum_probs=52.4

Q ss_pred             cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          529 SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNP  608 (926)
Q Consensus       529 r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~  608 (926)
                      ..+.+..||||||.+||||=++|+   +|      =|..+          ||=-+.+                       
T Consensus       132 ~~r~p~~LSGGqkqRvaIA~vLa~---~P------~iliL----------DEPta~L-----------------------  169 (235)
T COG1122         132 LDRPPFNLSGGQKQRVAIAGVLAM---GP------EILLL----------DEPTAGL-----------------------  169 (235)
T ss_pred             ccCCccccCCcceeeHHhhHHHHc---CC------CEEEE----------cCCCCCC-----------------------
Confidence            457889999999999999999999   46      45666          5544444                       


Q ss_pred             CCCCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          609 NSRANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       609 ~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                       |..  +....       -.+|.++... .-|-.+|||.--...- .|+.+
T Consensus       170 -D~~--~~~~l-------~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~  210 (235)
T COG1122         170 -DPK--GRREL-------LELLKKLKEEGGKTIIIVTHDLELVLEYADRVV  210 (235)
T ss_pred             -CHH--HHHHH-------HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE
Confidence             333  33333       5567777776 3577777998655544 55543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.56  E-value=0.048  Score=51.94  Aligned_cols=63  Identities=17%  Similarity=0.077  Sum_probs=46.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-.
T Consensus       125 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~  161 (190)
T TIGR01166       125 THCLSGGEKKRVAIAGAVAM---RP------DVLLL----------DEPTAGL------------------------DPA  161 (190)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            36899999999999998875   66      78888          7766666                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecCh
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP  647 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~  647 (926)
                        +..++       .+.|.++.....|=.+|+|++
T Consensus       162 --~~~~~-------~~~l~~~~~~~~tili~sH~~  187 (190)
T TIGR01166       162 --GREQM-------LAILRRLRAEGMTVVISTHDV  187 (190)
T ss_pred             --HHHHH-------HHHHHHHHHcCCEEEEEeecc
Confidence              56666       677888876544555558875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.55  E-value=0.061  Score=52.63  Aligned_cols=76  Identities=12%  Similarity=-0.003  Sum_probs=52.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       140 ~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  176 (236)
T cd03219         140 PAGELSYGQQRRLEIARALAT---DP------KLLLL----------DEPAAGL------------------------NP  176 (236)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            456899999999999998886   56      78888          7755555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.....|=.+|+|++-.... +|+.+-+
T Consensus       177 ~--~~~~l-------~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l  216 (236)
T cd03219         177 E--ETEEL-------AELIRELRERGITVLLVEHDMDVVMSLADRVTVL  216 (236)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            3  34444       56677777544454555999887655 5665544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.54  E-value=0.061  Score=51.93  Aligned_cols=75  Identities=16%  Similarity=0.074  Sum_probs=52.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       127 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  163 (211)
T cd03264         127 KIGSLSGGMRRRVGIAQALVG---DP------SILIV----------DEPTAGL------------------------DP  163 (211)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            346899999999999999986   66      78888          6655555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       -+.|.+++.. .|=.+|+|++....+ .|+.+-+
T Consensus       164 ~--~~~~l-------~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l  202 (211)
T cd03264         164 E--ERIRF-------RNLLSELGED-RIVILSTHIVEDVESLCNQVAVL  202 (211)
T ss_pred             H--HHHHH-------HHHHHHHhCC-CEEEEEcCCHHHHHHhCCEEEEE
Confidence            3  44555       5678888764 565555999887654 5766433

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=93.51  E-value=0.069  Score=52.44  Aligned_cols=75  Identities=15%  Similarity=0.064  Sum_probs=53.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-
T Consensus       136 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~gL------------------------D~  172 (238)
T cd03249         136 RGSQLSGGQKQRIAIARALLR---NP------KILLL----------DEATSAL------------------------DA  172 (238)
T ss_pred             CCccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence            346899999999999998875   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       ...|.++. ..-|-.+++|++-...-+|+.+-+
T Consensus       173 ~--~~~~l-------~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l  210 (238)
T cd03249         173 E--SEKLV-------QEALDRAM-KGRTTIVIAHRLSTIRNADLIAVL  210 (238)
T ss_pred             H--HHHHH-------HHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEE
Confidence            4  55556       55676765 444555559998777666665443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.49  E-value=0.071  Score=51.59  Aligned_cols=76  Identities=17%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.
T Consensus       129 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  165 (222)
T cd03224         129 LAGTLSGGEQQMLAIARALMS---RP------KLLLL----------DEPSEGL------------------------AP  165 (222)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCcccC------------------------CH
Confidence            345899999999999988874   55      88888          7766655                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ..+|.++....-|=.+++|++-...+ .|+.+-+
T Consensus       166 ~--~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  205 (222)
T cd03224         166 K--IVEEI-------FEAIRELRDEGVTILLVEQNARFALEIADRAYVL  205 (222)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEe
Confidence            4  44555       66777877644565666999876544 5655443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=93.46  E-value=0.056  Score=53.28  Aligned_cols=76  Identities=11%  Similarity=0.013  Sum_probs=55.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-
T Consensus       129 ~~~~LS~G~~qrl~laral~~---~p------~llll----------DEP~~~L------------------------D~  165 (236)
T TIGR03864       129 KVRELNGGHRRRVEIARALLH---RP------ALLLL----------DEPTVGL------------------------DP  165 (236)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCccCC------------------------CH
Confidence            345899999999999999986   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       .+.|.+++.. ..|=.+++|++-....+|+.+-+
T Consensus       166 ~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l  205 (236)
T TIGR03864       166 A--SRAAI-------VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL  205 (236)
T ss_pred             H--HHHHH-------HHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE
Confidence            4  55556       6677787643 44545559998777667776655

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=93.43  E-value=0.056  Score=52.77  Aligned_cols=73  Identities=22%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.. 
T Consensus       145 ~~LS~Ge~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~-  180 (228)
T PRK10584        145 AQLSGGEQQRVALARAFNG---RP------DVLFA----------DEPTGNL------------------------DRQ-  180 (228)
T ss_pred             hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH-
Confidence            4899999999999998886   56      78888          7766555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLT  658 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~  658 (926)
                       +...+       ...|.++... ..|=.+++|++-....+|+.+-
T Consensus       181 -~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~  218 (228)
T PRK10584        181 -TGDKI-------ADLLFSLNREHGTTLILVTHDLQLAARCDRRLR  218 (228)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence             55556       6678887654 4455556999877777776543

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=93.41  E-value=0.062  Score=54.54  Aligned_cols=76  Identities=14%  Similarity=0.068  Sum_probs=54.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.++|||..++.   +|      .|+.+          ||-.+-|                        |-
T Consensus       112 ~~~~LSgGe~qrv~iaraL~~---~p------~llll----------DEPt~~L------------------------D~  148 (246)
T cd03237         112 EVPELSGGELQRVAIAACLSK---DA------DIYLL----------DEPSAYL------------------------DV  148 (246)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999998885   55      88898          7766666                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++... .-|=++|+|+...... .|+.+-+
T Consensus       149 ~--~~~~l-------~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l  189 (246)
T cd03237         149 E--QRLMA-------SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF  189 (246)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  45555       6778888764 4555666999776654 5766543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10908 cell division protein FtsE; Provisional

Probab=93.38  E-value=0.072  Score=51.96  Aligned_cols=75  Identities=19%  Similarity=0.035  Sum_probs=53.4

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       135 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~  171 (222)
T PRK10908        135 PIQLSGGEQQRVGIARAVVN---KP------AVLLA----------DEPTGNL------------------------DDA  171 (222)
T ss_pred             chhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCcC------------------------CHH
Confidence            36899999999999998886   66      78888          7766666                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       ...|.++....-|=++++|++-.... +|+.+-+
T Consensus       172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (222)
T PRK10908        172 --LSEGI-------LRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL  210 (222)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              55556       56677776554455556999877665 4665443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.37  E-value=0.074  Score=51.79  Aligned_cols=73  Identities=18%  Similarity=0.098  Sum_probs=51.0

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.. 
T Consensus       130 ~~LSgG~~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------D~~-  165 (220)
T cd03293         130 HQLSGGMRQRVALARALAV---DP------DVLLL----------DEPFSAL------------------------DAL-  165 (220)
T ss_pred             ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------CCCCCCC------------------------CHH-
Confidence            5899999999999999987   66      78888          7755555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLT  658 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~  658 (926)
                       +...+       .+.|.++... ..|=++|+|++-... -+|+.+-
T Consensus       166 -~~~~~-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  204 (220)
T cd03293         166 -TREQL-------QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV  204 (220)
T ss_pred             -HHHHH-------HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence             45555       5667777544 445556699987544 3566543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=93.36  E-value=0.062  Score=53.37  Aligned_cols=75  Identities=17%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-.+.+                        |..
T Consensus       151 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  187 (236)
T cd03267         151 VRQLSLGQRMRAEIAAALLH---EP------EILFL----------DEPTIGL------------------------DVV  187 (236)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------CHH
Confidence            45799999999999999987   66      78888          8877777                        555


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|++-...+ .|+.+-+
T Consensus       188 --~~~~l-------~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  227 (236)
T cd03267         188 --AQENI-------RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI  227 (236)
T ss_pred             --HHHHH-------HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence              66666       7778887654 3455556999876655 5665544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=93.36  E-value=0.077  Score=51.75  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=52.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.+
T Consensus       148 ~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~  184 (226)
T cd03248         148 GSQLSGGQKQRVAIARALIR---NP------QVLIL----------DEATSAL------------------------DAE  184 (226)
T ss_pred             CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            56899999999999998875   66      78888          6655555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       ...|.++.. ..|=.+|+|++......|+.+-+
T Consensus       185 --~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l  221 (226)
T cd03248         185 --SEQQV-------QQALYDWPE-RRTVLVIAHRLSTVERADQILVL  221 (226)
T ss_pred             --HHHHH-------HHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEe
Confidence              55555       667777765 23444459998877767766543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=93.36  E-value=0.09  Score=51.64  Aligned_cols=78  Identities=17%  Similarity=0.055  Sum_probs=54.1

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccc--cCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLV--VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN  607 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcD--P~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~  607 (926)
                      ...+.+||||||.+++||..++.   +  |      ++..+          ||-.+-+                      
T Consensus        82 ~~~~~~LSgGq~qrl~laral~~---~~~p------~llLl----------DEPt~~L----------------------  120 (176)
T cd03238          82 GQKLSTLSGGELQRVKLASELFS---EPPG------TLFIL----------DEPSTGL----------------------  120 (176)
T ss_pred             CCCcCcCCHHHHHHHHHHHHHhh---CCCC------CEEEE----------eCCcccC----------------------
Confidence            35678999999999999998886   6  5      67777          6655544                      


Q ss_pred             CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        |..  +...+       .+.|.++.....|=.+|+|++-....+|+.+-+
T Consensus       121 --D~~--~~~~l-------~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l  161 (176)
T cd03238         121 --HQQ--DINQL-------LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDF  161 (176)
T ss_pred             --CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence              444  55566       566777765445545559998777667765443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.35  E-value=0.076  Score=49.17  Aligned_cols=72  Identities=24%  Similarity=0.206  Sum_probs=52.5

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      ||||||.+++||..++..   |      |+..+          ||..+-+                        |-.  +
T Consensus        81 lS~G~~~r~~l~~~l~~~---~------~i~il----------DEp~~~l------------------------D~~--~  115 (157)
T cd00267          81 LSGGQRQRVALARALLLN---P------DLLLL----------DEPTSGL------------------------DPA--S  115 (157)
T ss_pred             CCHHHHHHHHHHHHHhcC---C------CEEEE----------eCCCcCC------------------------CHH--H
Confidence            999999999999999883   5      88888          8877777                        554  5


Q ss_pred             hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhcce
Q psy834          616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTI  659 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v  659 (926)
                      ..++       .+.|.++.....|=++++|+.-..... |+.+-+
T Consensus       116 ~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l  153 (157)
T cd00267         116 RERL-------LELLRELAEEGRTVIIVTHDPELAELAADRVIVL  153 (157)
T ss_pred             HHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            5555       566777766534445559998887775 665443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=93.31  E-value=0.068  Score=59.50  Aligned_cols=72  Identities=19%  Similarity=0.184  Sum_probs=52.7

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||++.|||=.+.    +.     +|+..+          ||-.+-+                        |..  
T Consensus       476 ~LSGGqrQRialARaLl----~~-----~~illl----------DEpts~L------------------------D~~--  510 (592)
T PRK10790        476 NLSVGQKQLLALARVLV----QT-----PQILIL----------DEATANI------------------------DSG--  510 (592)
T ss_pred             CCCHHHHHHHHHHHHHH----hC-----CCEEEE----------eCCcccC------------------------CHH--
Confidence            69999999999986554    34     489999          7655545                        443  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      +-.+.       .+.|.++.. ..|..+|+|++-+...+|+.+-+
T Consensus       511 t~~~i-------~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l  547 (592)
T PRK10790        511 TEQAI-------QQALAAVRE-HTTLVVIAHRLSTIVEADTILVL  547 (592)
T ss_pred             HHHHH-------HHHHHHHhC-CCEEEEEecchHHHHhCCEEEEE
Confidence            44444       455666654 37889999999999999998765

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=93.30  E-value=0.056  Score=51.96  Aligned_cols=64  Identities=17%  Similarity=0.101  Sum_probs=46.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       125 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  161 (198)
T TIGR01189       125 AAQLSAGQQRRLALARLWLS---RA------PLWIL----------DEPTTAL------------------------DKA  161 (198)
T ss_pred             hhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CHH
Confidence            46899999999999988876   55      88888          7766666                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChh
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT  648 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~  648 (926)
                        +...+       ...|.++.....|=++++|++.
T Consensus       162 --~~~~l-------~~~l~~~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       162 --GVALL-------AGLLRAHLARGGIVLLTTHQDL  188 (198)
T ss_pred             --HHHHH-------HHHHHHHHhCCCEEEEEEcccc
Confidence              44555       5667777655556566688873

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=93.29  E-value=0.079  Score=60.33  Aligned_cols=73  Identities=21%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||++.|||=.|.   .+|      +|..+          ||--+-+                        |.. 
T Consensus       600 ~~LSgGQrQRlalARall---~~p------~iliL----------DE~Ts~L------------------------D~~-  635 (694)
T TIGR03375       600 RSLSGGQRQAVALARALL---RDP------PILLL----------DEPTSAM------------------------DNR-  635 (694)
T ss_pred             CCCCHHHHHHHHHHHHHh---cCC------CEEEE----------eCCCCCC------------------------CHH-
Confidence            579999999999997765   255      89999          7744444                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       ++.|.++.. ..|..+|+|++-+...+|+.+-+
T Consensus       636 -te~~i-------~~~l~~~~~-~~T~iiItHrl~~~~~~D~iivl  672 (694)
T TIGR03375       636 -SEERF-------KDRLKRWLA-GKTLVLVTHRTSLLDLVDRIIVM  672 (694)
T ss_pred             -HHHHH-------HHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence             33334       444666654 47889999999999999998765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=93.25  E-value=0.1  Score=50.58  Aligned_cols=75  Identities=19%  Similarity=0.109  Sum_probs=52.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||..+.+                        |.
T Consensus       136 ~~~~LS~G~~qr~~laral~~---~p------~llll----------DEP~~~L------------------------D~  172 (221)
T cd03244         136 GGENLSVGQRQLLCLARALLR---KS------KILVL----------DEATASV------------------------DP  172 (221)
T ss_pred             CCCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence            456899999999999999986   66      78888          7877777                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       ...|.++... -|=++++|++-.....|+.+-+
T Consensus       173 ~--~~~~l-------~~~l~~~~~~-~tii~~sh~~~~~~~~d~i~~l  210 (221)
T cd03244         173 E--TDALI-------QKTIREAFKD-CTVLTIAHRLDTIIDSDRILVL  210 (221)
T ss_pred             H--HHHHH-------HHHHHHhcCC-CEEEEEeCCHHHHhhCCEEEEE
Confidence            4  44555       4556666542 4545559998766666665444

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=93.24  E-value=0.1  Score=51.13  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=52.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |-
T Consensus       140 ~~~~LS~G~~qrl~laral~~---~p------~illl----------DEP~~gL------------------------D~  176 (226)
T cd03234         140 LVKGISGGERRRVSIAVQLLW---DP------KVLIL----------DEPTSGL------------------------DS  176 (226)
T ss_pred             cccCcCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            455899999999999998887   56      77888          7766666                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecCh--hhHHhhhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP--TTRSRVQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~--~t~sr~~~~~  657 (926)
                      .  +...+       ..+|.++.....|=++++|++  ....-.|+.+
T Consensus       177 ~--~~~~~-------~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~  215 (226)
T cd03234         177 F--TALNL-------VSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL  215 (226)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence            3  44455       567888776555667779997  3455566554

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.23  E-value=0.075  Score=52.25  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=54.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       142 ~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  178 (243)
T TIGR02315       142 RADQLSGGQQQRVAIARALAQ---QP------DLILA----------DEPIASL------------------------DP  178 (243)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            346899999999999999886   66      78888          7766655                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus       179 ~--~~~~l-------~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l  219 (243)
T TIGR02315       179 K--TSKQV-------MDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL  219 (243)
T ss_pred             H--HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            4  55566       6678887654 3444455999887655 5766544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.18  E-value=0.098  Score=51.84  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.++|||..|+.   +|      ++..+          ||..+-+                        |.
T Consensus       145 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  181 (252)
T PRK14272        145 PATGLSGGQQQRLCIARALAV---EP------EILLM----------DEPTSAL------------------------DP  181 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            457899999999999998887   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++.. .-|=.+++|++-.... +|+.+-+
T Consensus       182 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  220 (252)
T PRK14272        182 A--STARI-------EDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFF  220 (252)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence            4  55555       556777754 3344444888876665 5777655

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=93.18  E-value=0.066  Score=53.20  Aligned_cols=76  Identities=14%  Similarity=-0.016  Sum_probs=54.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.
T Consensus       145 ~~~~LSgG~~qrv~laral~~---~p------~vlll----------DEP~~~L------------------------D~  181 (253)
T TIGR02323       145 LPRAFSGGMQQRLQIARNLVT---RP------RLVFM----------DEPTGGL------------------------DV  181 (253)
T ss_pred             CchhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence            356899999999999998876   66      88888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|-.+|+|++-.... +|+.+-+
T Consensus       182 ~--~~~~l-------~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l  222 (253)
T TIGR02323       182 S--VQARL-------LDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM  222 (253)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            4  55666       6777777654 4455566998877664 5665433

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.18  E-value=0.066  Score=56.55  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.++|||-.|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       173 ~~~~LSgGqkqRvaiAraL~~---~p------~iLLL----------DEPtsgL------------------------D~  209 (320)
T PRK13631        173 SPFGLSGGQKRRVAIAGILAI---QP------EILIF----------DEPTAGL------------------------DP  209 (320)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCccCC------------------------CH
Confidence            345899999999999999988   66      78888          7755555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  ....+       .+.|.++....-|=.+|+|+.-...+ .|+.+-+
T Consensus       210 ~--~~~~l-------~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl  249 (320)
T PRK13631        210 K--GEHEM-------MQLILDAKANNKTVFVITHTMEHVLEVADEVIVM  249 (320)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            3  34444       56677776655576677999886654 6765433

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=93.15  E-value=0.074  Score=52.57  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=52.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       139 ~~~~LSgG~~qrv~laral~~---~p------~llll----------DEP~~gL------------------------D~  175 (224)
T cd03220         139 PVKTYSSGMKARLAFAIATAL---EP------DILLI----------DEVLAVG------------------------DA  175 (224)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            346899999999999998887   55      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+++|++-...+ +|+.+-+
T Consensus       176 ~--~~~~~-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  215 (224)
T cd03220         176 A--FQEKC-------QRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL  215 (224)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  44455       56677776654454555999876654 5665443

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.14  E-value=0.069  Score=54.96  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||-.++.   +|      ++..+          ||-.+-|                        |-
T Consensus       141 ~~~~LSgGq~qrv~iAraL~~---~P------~llll----------DEPt~gL------------------------D~  177 (287)
T PRK13637        141 SPFELSGGQKRRVAIAGVVAM---EP------KILIL----------DEPTAGL------------------------DP  177 (287)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCccCC------------------------CH
Confidence            456899999999999998877   77      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .++|.++... .-|=++|+|..-...+ +|+.+-+
T Consensus       178 ~--~~~~l-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l  218 (287)
T PRK13637        178 K--GRDEI-------LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM  218 (287)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  55566       6677888764 4566777999877655 6877665

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=93.11  E-value=0.086  Score=51.69  Aligned_cols=73  Identities=10%  Similarity=0.046  Sum_probs=54.5

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||.+++||..++.   +|      +|..+          ||-.+-+                        |..  
T Consensus       144 ~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~--  178 (243)
T TIGR01978       144 GFSGGEKKRNEILQMALL---EP------KLAIL----------DEIDSGL------------------------DID--  178 (243)
T ss_pred             CcCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CHH--
Confidence            599999999999998876   55      78888          7766666                        555  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v  659 (926)
                      +...+       .+.|.++.....|=.+|+|++-...+  .|+.+-+
T Consensus       179 ~~~~l-------~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l  218 (243)
T TIGR01978       179 ALKIV-------AEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL  218 (243)
T ss_pred             HHHHH-------HHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence            55666       67788887655566666999888776  3776544

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=93.11  E-value=0.081  Score=58.55  Aligned_cols=72  Identities=21%  Similarity=0.204  Sum_probs=53.3

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||+..|||=.|.=   +|      |+..+          ||-.+.+                        |.+  
T Consensus       480 ~LSGGqrQRi~LARall~---~~------~ilil----------DEptsaL------------------------D~~--  514 (582)
T PRK11176        480 LLSGGQRQRIAIARALLR---DS------PILIL----------DEATSAL------------------------DTE--  514 (582)
T ss_pred             cCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECccccC------------------------CHH--
Confidence            599999999998865432   45      89999          7766666                        555  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      +-.++       ...|.++.. ..|-.+|+|++.++..+|+.+-+
T Consensus       515 t~~~i-------~~~l~~~~~-~~tvI~VtHr~~~~~~~D~Ii~l  551 (582)
T PRK11176        515 SERAI-------QAALDELQK-NRTSLVIAHRLSTIEKADEILVV  551 (582)
T ss_pred             HHHHH-------HHHHHHHhC-CCEEEEEecchHHHHhCCEEEEE
Confidence            44455       445555533 36778889999999999999877

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=93.09  E-value=0.078  Score=59.25  Aligned_cols=73  Identities=11%  Similarity=0.069  Sum_probs=54.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||-.|.-   +|      ||..+          ||-.+-+                        |.. 
T Consensus       450 ~~LSgGq~qRi~lARall~---~~------~illl----------DEpts~L------------------------D~~-  485 (569)
T PRK10789        450 VMLSGGQKQRISIARALLL---NA------EILIL----------DDALSAV------------------------DGR-  485 (569)
T ss_pred             CcCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECccccC------------------------CHH-
Confidence            4699999999999987764   55      89999          7766555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       .+.|.++. ...|-.+|+|++-+...+|+.+-+
T Consensus       486 -~~~~i-------~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l  522 (569)
T PRK10789        486 -TEHQI-------LHNLRQWG-EGRTVIISAHRLSALTEASEILVM  522 (569)
T ss_pred             -HHHHH-------HHHHHHHh-CCCEEEEEecchhHHHcCCEEEEE
Confidence             44444       34455554 357888889999999999998766

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.07  E-value=0.098  Score=51.90  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       143 ~~~~LSgG~~qrv~laral~~---~p------~lllL----------DEP~~~L------------------------D~  179 (250)
T PRK14247        143 PAGKLSGGQQQRLCIARALAF---QP------EVLLA----------DEPTANL------------------------DP  179 (250)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence            346899999999999998885   55      88888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. .-|=.+++|++-... -+|+.+-+
T Consensus       180 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  218 (250)
T PRK14247        180 E--NTAKI-------ESLFLELKK-DMTIVLVTHFPQQAARISDYVAFL  218 (250)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence            4  55566       667777754 345555589987654 46766544

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=93.06  E-value=0.066  Score=52.89  Aligned_cols=75  Identities=16%  Similarity=0.080  Sum_probs=53.4

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       134 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEP~~~L------------------------D~~  170 (239)
T cd03296         134 PAQLSGGQRQRVALARALAV---EP------KVLLL----------DEPFGAL------------------------DAK  170 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            35899999999999998877   56      78888          7765555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|++-.. .-+|+.+-+
T Consensus       171 --~~~~l-------~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  210 (239)
T cd03296         171 --VRKEL-------RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM  210 (239)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              45555       6678888764 44555559998754 446776554

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=93.05  E-value=0.094  Score=51.11  Aligned_cols=75  Identities=19%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..++.   +|      ++..+          ||-.+-|                        |.
T Consensus       136 ~~~~LS~G~~~rv~la~al~~---~p------~llll----------DEP~~~L------------------------D~  172 (229)
T cd03254         136 NGGNLSQGERQLLAIARAMLR---DP------KILIL----------DEATSNI------------------------DT  172 (229)
T ss_pred             CCCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence            356899999999999999975   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      +  +...+       .+.|.++.. ..|=.+|+|++......|+.+-+
T Consensus       173 ~--~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l  210 (229)
T cd03254         173 E--TEKLI-------QEALEKLMK-GRTSIIIAHRLSTIKNADKILVL  210 (229)
T ss_pred             H--HHHHH-------HHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEE
Confidence            4  44445       555666653 34444559999877777766544

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=93.05  E-value=0.084  Score=57.62  Aligned_cols=77  Identities=18%  Similarity=-0.006  Sum_probs=55.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.++|||..|+.   +|      +|..+          ||-.+=+                        |
T Consensus       131 ~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D  167 (490)
T PRK10938        131 RRFKYLSTGETRKTLLCQALMS---EP------DLLIL----------DEPFDGL------------------------D  167 (490)
T ss_pred             CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------C
Confidence            4667999999999999999986   67      89999          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.+++...-|=.+|+|+.-...+ +|+.+-+
T Consensus       168 ~~--~~~~l-------~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l  208 (490)
T PRK10938        168 VA--SRQQL-------AELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL  208 (490)
T ss_pred             HH--HHHHH-------HHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence            44  55555       67788887655565666998766555 4665544

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=93.05  E-value=0.09  Score=51.48  Aligned_cols=74  Identities=20%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||.+++||..++.   +|      +|..+          ||--+-+                        |-.
T Consensus       135 ~~~LS~G~~~rl~la~aL~~---~p------~llll----------DEP~~~L------------------------D~~  171 (236)
T cd03253         135 GLKLSGGEKQRVAIARAILK---NP------PILLL----------DEATSAL------------------------DTH  171 (236)
T ss_pred             CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            56899999999999998887   66      78888          7766666                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       ...|.++.. .-|=.+++|++-.....|+.+-+
T Consensus       172 --~~~~l-------~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l  208 (236)
T cd03253         172 --TEREI-------QAALRDVSK-GRTTIVIAHRLSTIVNADKIIVL  208 (236)
T ss_pred             --HHHHH-------HHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEE
Confidence              55566       556667665 44555559988776667776555

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=93.03  E-value=0.086  Score=58.80  Aligned_cols=72  Identities=21%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||+.+|||=.|.    ++     +|+..+          ||-.+=+                        |..  
T Consensus       471 ~LSgGq~QRialARall----~~-----~~iliL----------DEpts~L------------------------D~~--  505 (588)
T PRK13657        471 QLSGGERQRLAIARALL----KD-----PPILIL----------DEATSAL------------------------DVE--  505 (588)
T ss_pred             CCCHHHHHHHHHHHHHh----cC-----CCEEEE----------eCCccCC------------------------CHH--
Confidence            69999999998886543    34     489999          7755555                        443  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      +-.++       .+.|.++.. ..|..+|+|++-++..+|+.+-+
T Consensus       506 t~~~i-------~~~l~~~~~-~~tvIiitHr~~~~~~~D~ii~l  542 (588)
T PRK13657        506 TEAKV-------KAALDELMK-GRTTFIIAHRLSTVRNADRILVF  542 (588)
T ss_pred             HHHHH-------HHHHHHHhc-CCEEEEEEecHHHHHhCCEEEEE
Confidence            44455       444555533 47888889999999999998777

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.98  E-value=0.091  Score=54.63  Aligned_cols=81  Identities=26%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ....||||||++.||||=-||.   .|     . +.+-             |-||                         
T Consensus       142 HyP~qLSGGEQQRVAiARAfa~---~P-----~-vLfA-------------DEPT-------------------------  174 (228)
T COG4181         142 HYPAQLSGGEQQRVALARAFAG---RP-----D-VLFA-------------DEPT-------------------------  174 (228)
T ss_pred             cCccccCchHHHHHHHHHHhcC---CC-----C-EEec-------------cCCC-------------------------
Confidence            4578999999999999999987   66     1 2222             2344                         


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhhhhhcceeeec
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRVQSSLTIQSAE  663 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~~~~~~v~~aE  663 (926)
                         -|+++-  .-....++|=+..+.-. |=.+|||.|..-+|++|.+.+...+
T Consensus       175 ---GNLD~~--Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~  223 (228)
T COG4181         175 ---GNLDRA--TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR  223 (228)
T ss_pred             ---CCcchh--HHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecce
Confidence               133332  11112556666555544 4455699999999999999876643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=92.97  E-value=0.1  Score=57.15  Aligned_cols=77  Identities=17%  Similarity=0.078  Sum_probs=55.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||--+-+                        |
T Consensus       399 ~~~~~LSgGqkqrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D  435 (500)
T TIGR02633       399 LPIGRLSGGNQQKAVLAKMLLT---NP------RVLIL----------DEPTRGV------------------------D  435 (500)
T ss_pred             CccccCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCCCc------------------------C
Confidence            3456899999999999999985   66      78888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .++|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus       436 ~~--~~~~l-------~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l  476 (500)
T TIGR02633       436 VG--AKYEI-------YKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI  476 (500)
T ss_pred             Hh--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            44  45555       66788887766665556999877665 4666533

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=92.95  E-value=0.12  Score=50.80  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=54.7

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhc-------cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWK-------LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRA  602 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQK-------cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~  602 (926)
                      ...+..||||||.+++||..||..-       .+|      .+..+          ||..+-+                 
T Consensus       118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~------~~lll----------DEp~~~l-----------------  164 (213)
T cd03279         118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARL------EALFI----------DEGFGTL-----------------  164 (213)
T ss_pred             cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCC------CEEEE----------eCCcccC-----------------
Confidence            3457789999999999999999632       233      46666          6655555                 


Q ss_pred             CCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          603 NPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       603 ~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                             |..  ....+       ...|.++.....|=.+|+|++--..+++.-+-|
T Consensus       165 -------D~~--~~~~~-------~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~  205 (213)
T cd03279         165 -------DPE--ALEAV-------ATALELIRTENRMVGVISHVEELKERIPQRLEV  205 (213)
T ss_pred             -------CHH--HHHHH-------HHHHHHHHhCCCEEEEEECchHHHHhhCcEEEE
Confidence                   333  44455       567788876555656669998777776554433

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=92.93  E-value=0.1  Score=52.99  Aligned_cols=73  Identities=16%  Similarity=0.063  Sum_probs=52.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       139 ~~~~LSgG~~qrv~laraL~~---~p------~llll----------DEPt~~L------------------------D~  175 (272)
T PRK15056        139 QIGELSGGQKKRVFLARAIAQ---QG------QVILL----------DEPFTGV------------------------DV  175 (272)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            446799999999999998886   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhh
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSS  656 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~  656 (926)
                      .  +...+       .+.|.++.....|=.+|+|++-.... .|+.
T Consensus       176 ~--~~~~l-------~~~L~~~~~~g~tviivsH~~~~~~~~~d~v  212 (272)
T PRK15056        176 K--TEARI-------ISLLRELRDEGKTMLVSTHNLGSVTEFCDYT  212 (272)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence            4  55666       67788887655565555999866544 4543

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.92  E-value=0.071  Score=51.30  Aligned_cols=67  Identities=16%  Similarity=0.064  Sum_probs=48.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||..+.+                        |-
T Consensus       120 ~~~~LS~G~~~rl~la~al~~---~p------~~lll----------DEP~~~L------------------------D~  156 (195)
T PRK13541        120 KCYSLSSGMQKIVAIARLIAC---QS------DLWLL----------DEVETNL------------------------SK  156 (195)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            356899999999999988886   56      88888          8877777                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR  650 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~  650 (926)
                      .  +...+       ++.|.++.....|=++++|++-.-
T Consensus       157 ~--~~~~l-------~~~l~~~~~~~~tiii~sh~~~~i  186 (195)
T PRK13541        157 E--NRDLL-------NNLIVMKANSGGIVLLSSHLESSI  186 (195)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCCcccc
Confidence            4  45555       666766655566666668887543

>TIGR00611 recf recF protein

Probab=92.92  E-value=1.3  Score=48.09  Aligned_cols=162  Identities=10%  Similarity=0.019  Sum_probs=84.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Q psy834          392 MQLQLNKEQQRLAPLLDRLRRYEADLK--ALY-KRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQV  468 (926)
Q Consensus       392 Lk~vnkKAIEQYEEfeEQyEELeaRrE--ELd-KekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi  468 (926)
                      +.+.-..++.+|....+++..+.++..  ... ...+...+.+..+-.+-...=..+++.++..|.++|..|..... . 
T Consensus       144 ~~~~y~~~~~~y~r~lkqRN~lLk~~~~~~~~~~~l~~w~~~L~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~-~-  221 (365)
T TIGR00611       144 VEPVYLSAWSDYQRVLKQRNAALKQAQRQYGDRTTLEVWDSQLAELGAKVSAWRAEFIEKLEPEAQKAHQLLLPELE-S-  221 (365)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-
Confidence            444447788888888888888876421  000 12444455555555444455556778888999999998742110 0 


Q ss_pred             hhhhcCCCC--cccc-h----hhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHH
Q psy834          469 YLIVSGWPK--KKEN-L----VIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGER  541 (926)
Q Consensus       469 ~L~lSgwP~--GkGN-L----vIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEK  541 (926)
                       +.+.-.|+  +... +    .-....++-        -|..       ..-|.-.-+.|.+  .|+..  -..+|+|||
T Consensus       222 -~~l~y~~~~~~~~~~~~~~L~~~~~~d~~--------~g~T-------~~GPHRdDl~~~~--~g~~~--~~~~S~Gq~  281 (365)
T TIGR00611       222 -LSLFYRGELWDKETDYAEALARNFERDLE--------RGYT-------LVGPHRDDLRFRL--NGLPV--EDFASQGQL  281 (365)
T ss_pred             -eEEEEeCchHHHHHHHHHHHHHhHHHHHH--------cCCC-------CCCcchhceEEEE--CCEEH--HHhcChhHH
Confidence             00100111  0000 0    000000000        0000       0112222334444  22221  348999999


Q ss_pred             HHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          542 TLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       542 SLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      .+++|||.+|-..+--....-.||..+          |||-+=|
T Consensus       282 r~l~lal~la~~~~l~~~~~~~pilLL----------DD~~seL  315 (365)
T TIGR00611       282 RSLALALRLAEGELLREEGGEYPILLL----------DDVASEL  315 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEE----------cCchhcc
Confidence            999999999985442111222599999          8888888

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=92.90  E-value=0.11  Score=50.47  Aligned_cols=74  Identities=20%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+=+                        |.
T Consensus       137 ~~~~LSgG~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~  173 (220)
T cd03245         137 RGRGLSGGQRQAVALARALLN---DP------PILLL----------DEPTSAM------------------------DM  173 (220)
T ss_pred             CCccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence            466999999999999999986   56      78888          7655555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~  658 (926)
                      .  +...+       .+.|.++... -|=.+|+|+.-...-.|+.+-
T Consensus       174 ~--~~~~l-------~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~  210 (220)
T cd03245         174 N--SEERL-------KERLRQLLGD-KTLIIITHRPSLLDLVDRIIV  210 (220)
T ss_pred             H--HHHHH-------HHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEE
Confidence            4  44555       5667777653 344455898876555555543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=92.87  E-value=0.086  Score=59.97  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      -..||||||+++|||=.|.=   +|      ||..+          ||--+-+                        |..
T Consensus       586 G~~LSGGQrQRialARAll~---~p------~iLiL----------DEpTS~L------------------------D~~  622 (686)
T TIGR03797       586 GGTLSGGQRQRLLIARALVR---KP------RILLF----------DEATSAL------------------------DNR  622 (686)
T ss_pred             CCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH
Confidence            35799999999999876542   55      89999          7765555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-.++       .+.|.++   ..|..+|+|++-+...+|+.+-+
T Consensus       623 --te~~i-------~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl  657 (686)
T TIGR03797       623 --TQAIV-------SESLERL---KVTRIVIAHRLSTIRNADRIYVL  657 (686)
T ss_pred             --HHHHH-------HHHHHHh---CCeEEEEecChHHHHcCCEEEEE
Confidence              33344       2234444   36899999999999999998766

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.87  E-value=0.089  Score=53.96  Aligned_cols=77  Identities=13%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..++.   +|      +|..+          ||..+.+                        |
T Consensus       137 ~~~~~LS~G~~qrl~laraL~~---~p------~lLil----------DEPt~gL------------------------D  173 (283)
T PRK13636        137 KPTHCLSFGQKKRVAIAGVLVM---EP------KVLVL----------DEPTAGL------------------------D  173 (283)
T ss_pred             CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------C
Confidence            4577999999999999988876   77      88888          8887777                        6


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       ..+|.++... .-|=.+++|+.....+ +|+.+-+
T Consensus       174 ~~--~~~~l-------~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l  215 (283)
T PRK13636        174 PM--GVSEI-------MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM  215 (283)
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            55  66666       6678888764 4565666999887654 6776544

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=92.85  E-value=0.1  Score=51.10  Aligned_cols=74  Identities=18%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-..-+                        |..
T Consensus       136 ~~~LS~G~~qrv~la~al~~---~p------~lllL----------DEP~~~L------------------------D~~  172 (234)
T cd03251         136 GVKLSGGQRQRIAIARALLK---DP------PILIL----------DEATSAL------------------------DTE  172 (234)
T ss_pred             CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CHH
Confidence            56899999999999999986   56      68888          7766666                        555


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       .+.|.++.. ..|=.+++|++-.....|+.+-+
T Consensus       173 --~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l  209 (234)
T cd03251         173 --SERLV-------QAALERLMK-NRTTFVIAHRLSTIENADRIVVL  209 (234)
T ss_pred             --HHHHH-------HHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEe
Confidence              55556       566777764 44555569999888877777554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.84  E-value=0.085  Score=54.04  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=54.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       147 ~~~~LS~Gq~qrv~laral~~---~p------~lLlL----------DEPt~~L------------------------D~  183 (289)
T PRK13645        147 SPFELSGGQKRRVALAGIIAM---DG------NTLVL----------DEPTGGL------------------------DP  183 (289)
T ss_pred             ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999998887   67      78888          8877766                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus       184 ~--~~~~l-------~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l  224 (289)
T PRK13645        184 K--GEEDF-------INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM  224 (289)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            4  44445       5667777664 3455555998876544 5776554

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=92.83  E-value=0.095  Score=50.80  Aligned_cols=74  Identities=15%  Similarity=0.051  Sum_probs=51.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-.
T Consensus       131 ~~~LS~G~~qrv~la~al~~---~p------~llll----------DEP~~~L------------------------D~~  167 (220)
T cd03263         131 ARTLSGGMKRKLSLAIALIG---GP------SVLLL----------DEPTSGL------------------------DPA  167 (220)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCCCCC------------------------CHH
Confidence            45899999999999999885   66      78888          7766655                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       -+.|.++... -|=.+++|++-...+ +|+.+-+
T Consensus       168 --~~~~l-------~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l  205 (220)
T cd03263         168 --SRRAI-------WDLILEVRKG-RSIILTTHSMDEAEALCDRIAIM  205 (220)
T ss_pred             --HHHHH-------HHHHHHHhcC-CEEEEEcCCHHHHHHhcCEEEEE
Confidence              44555       4567777653 444444898876655 5665443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=92.80  E-value=0.1  Score=50.40  Aligned_cols=74  Identities=23%  Similarity=0.203  Sum_probs=52.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.. 
T Consensus       127 ~~LS~G~~qrv~ia~al~~---~p------~llll----------DEP~~~L------------------------D~~-  162 (211)
T cd03298         127 GELSGGERQRVALARVLVR---DK------PVLLL----------DEPFAAL------------------------DPA-  162 (211)
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence            4899999999999999984   56      78888          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                       +...+       .+.|.++... .-|=.+++|++-.... .|+.+-+
T Consensus       163 -~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  202 (211)
T cd03298         163 -LRAEM-------LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL  202 (211)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence             44555       6677777654 3454555998876654 6766544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=92.80  E-value=0.1  Score=57.67  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+.+|||=.|.=   +|      |+..+          ||-.+-+                        |.. 
T Consensus       475 ~~LSgGq~Qrl~laRal~~---~~------~ilil----------DEpts~l------------------------D~~-  510 (576)
T TIGR02204       475 VTLSGGQRQRIAIARAILK---DA------PILLL----------DEATSAL------------------------DAE-  510 (576)
T ss_pred             CcCCHHHHHHHHHHHHHHh---CC------CeEEE----------eCccccc------------------------CHH-
Confidence            3799999999999976542   44      89999          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       ...|..+.. ..|...|+|++.....+|+.+.+
T Consensus       511 -~~~~i-------~~~l~~~~~-~~t~IiitH~~~~~~~~d~vi~l  547 (576)
T TIGR02204       511 -SEQLV-------QQALETLMK-GRTTLIIAHRLATVLKADRIVVM  547 (576)
T ss_pred             -HHHHH-------HHHHHHHhC-CCEEEEEecchHHHHhCCEEEEE
Confidence             32333       334555543 46888889999999999998776

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=92.75  E-value=0.084  Score=52.01  Aligned_cols=76  Identities=16%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       122 ~~~~LS~G~~qrv~laral~~---~p------~vllL----------DEPt~~L------------------------D~  158 (230)
T TIGR02770       122 YPFQLSGGMLQRVMIALALLL---EP------PFLIA----------DEPTTDL------------------------DV  158 (230)
T ss_pred             ChhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccc------------------------CH
Confidence            446899999999999999886   66      78888          7755555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+++|++-...+ +|+.+-+
T Consensus       159 ~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  199 (230)
T TIGR02770       159 V--NQARV-------LKLLRELRQLFGTGILLITHDLGVVARIADEVAVM  199 (230)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  34444       5567777654 4465666999877765 5655443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=92.74  E-value=0.1  Score=51.80  Aligned_cols=75  Identities=13%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       146 ~~~~LSgGq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  182 (253)
T PRK14242        146 SALGLSGGQQQRLCIARALAV---EP------EVLLM----------DEPASAL------------------------DP  182 (253)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999998876   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. ..|=.+|+|++-...+ +|+.+-+
T Consensus       183 ~--~~~~l-------~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l  221 (253)
T PRK14242        183 I--ATQKI-------EELIHELKA-RYTIIIVTHNMQQAARVSDVTAFF  221 (253)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEE
Confidence            4  44455       566777754 3465666999877655 6776555

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=92.72  E-value=0.12  Score=51.74  Aligned_cols=76  Identities=21%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..++.   +|      ++..+          ||-..-+                        |.
T Consensus       135 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  171 (255)
T PRK11231        135 RLTDLSGGQRQRAFLAMVLAQ---DT------PVVLL----------DEPTTYL------------------------DI  171 (255)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            356899999999999998887   67      88888          7766555                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++....-|-.+++|++-...+ .|+.+-+
T Consensus       172 ~--~~~~l-------~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l  211 (255)
T PRK11231        172 N--HQVEL-------MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL  211 (255)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence            4  55666       66788877654565555999887554 5665544

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=92.69  E-value=0.079  Score=54.16  Aligned_cols=75  Identities=15%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.+
T Consensus       142 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~~  178 (280)
T PRK13633        142 PHLLSGGQKQRVAIAGILAM---RP------ECIIF----------DEPTAML------------------------DPS  178 (280)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            36999999999999999876   66      77777          6655555                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|-.+|+|+.-....+|+.+-+
T Consensus       179 --~~~~l-------~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l  217 (280)
T PRK13633        179 --GRREV-------VNTIKELNKKYGITIILITHYMEEAVEADRIIVM  217 (280)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE
Confidence              55555       5667777654 45666679999887777776554

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.69  E-value=0.12  Score=51.50  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |
T Consensus       143 ~~~~~LS~Gq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D  179 (251)
T PRK14249        143 KSGLALSGGQQQRLCIARVLAI---EP------EVILM----------DEPCSAL------------------------D  179 (251)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------C
Confidence            4567899999999999999975   66      78888          7765555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v  659 (926)
                      -.  +...+       .++|.++. ..-|=.+|+|+.-...++ |+.+-+
T Consensus       180 ~~--~~~~l-------~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l  219 (251)
T PRK14249        180 PV--STMRI-------EELMQELK-QNYTIAIVTHNMQQAARASDWTGFL  219 (251)
T ss_pred             HH--HHHHH-------HHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEE
Confidence            44  44444       45676764 334555559998887775 776554

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.68  E-value=0.091  Score=53.66  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=55.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-.
T Consensus       134 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~gL------------------------D~~  170 (274)
T PRK13644        134 PKTLSGGQGQCVALAGILTM---EP------ECLIF----------DEVTSML------------------------DPD  170 (274)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            36899999999999998887   67      78888          6655555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       .+.|.++....-|-.+++|+.-....+|+.+-+
T Consensus       171 --~~~~l-------~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l  208 (274)
T PRK13644        171 --SGIAV-------LERIKKLHEKGKTIVYITHNLEELHDADRIIVM  208 (274)
T ss_pred             --HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEE
Confidence              44555       566777776556767779998888777776554

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.68  E-value=0.097  Score=52.04  Aligned_cols=76  Identities=12%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       128 ~~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~  164 (241)
T PRK14250        128 DVKNLSGGEAQRVSIARTLAN---NP------EVLLL----------DEPTSAL------------------------DP  164 (241)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999999885   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|+.-.... +|+.+-+
T Consensus       165 ~--~~~~l-------~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l  205 (241)
T PRK14250        165 T--STEII-------EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL  205 (241)
T ss_pred             H--HHHHH-------HHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence            4  55566       6678887654 4465556999876544 6776544

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.67  E-value=0.12  Score=51.71  Aligned_cols=76  Identities=11%  Similarity=0.054  Sum_probs=54.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       151 ~~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D  187 (259)
T PRK14274        151 TQALSLSGGQQQRLCIARALAT---NP------DVLLM----------DEPTSAL------------------------D  187 (259)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------C
Confidence            3456899999999999998887   66      78888          7766666                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      -+  +...+       .+.|.++.. ..|=++|+|+.-... -+|+.+-+
T Consensus       188 ~~--~~~~l-------~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l  227 (259)
T PRK14274        188 PV--STRKI-------EELILKLKE-KYTIVIVTHNMQQAARVSDQTAFF  227 (259)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence            44  55555       667888865 356677799987644 46766544

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=92.61  E-value=0.12  Score=51.71  Aligned_cols=76  Identities=12%  Similarity=0.027  Sum_probs=54.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       144 ~~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D  180 (258)
T PRK14241        144 KPGGGLSGGQQQRLCIARAIAV---EP------DVLLM----------DEPCSAL------------------------D  180 (258)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------C
Confidence            4566899999999999998886   56      88888          7766655                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      ..  +...+       .+.|.++.. .-|-.+|+|+.-... -+|+.+-+
T Consensus       181 ~~--~~~~l-------~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l  220 (258)
T PRK14241        181 PI--STLAI-------EDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFF  220 (258)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEE
Confidence            44  44555       677888864 346556699987654 46876654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.60  E-value=0.1  Score=49.78  Aligned_cols=70  Identities=14%  Similarity=0.049  Sum_probs=50.0

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      ||||||.+++||..++.   +|      ++..+          ||-.+-+                        |..  +
T Consensus       105 LS~G~~qrl~la~al~~---~p------~llll----------DEP~~~L------------------------D~~--~  139 (182)
T cd03215         105 LSGGNQQKVVLARWLAR---DP------RVLIL----------DEPTRGV------------------------DVG--A  139 (182)
T ss_pred             cCHHHHHHHHHHHHHcc---CC------CEEEE----------CCCCcCC------------------------CHH--H
Confidence            99999999999998887   66      78888          7755555                        444  4


Q ss_pred             hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      ...+       .+.|.++....-|=.+++|+.-...+ +|+.+
T Consensus       140 ~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~  175 (182)
T cd03215         140 KAEI-------YRLIRELADAGKAVLLISSELDELLGLCDRIL  175 (182)
T ss_pred             HHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence            4455       66788886654555555999877766 45543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.58  E-value=0.12  Score=51.34  Aligned_cols=75  Identities=13%  Similarity=0.125  Sum_probs=53.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..++.   +|      +|..+          ||..+-+                        |.
T Consensus       143 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  179 (250)
T PRK14245        143 SAFALSGGQQQRLCIARAMAV---SP------SVLLM----------DEPASAL------------------------DP  179 (250)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999999876   66      78888          7755544                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++.. .-|-.+|+|++-...+ +|+.+-+
T Consensus       180 ~--~~~~l-------~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l  218 (250)
T PRK14245        180 I--STAKV-------EELIHELKK-DYTIVIVTHNMQQAARVSDKTAFF  218 (250)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence            3  34444       566777754 3566666999987655 6887665

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=92.57  E-value=0.1  Score=50.87  Aligned_cols=76  Identities=9%  Similarity=-0.033  Sum_probs=54.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       121 ~~~~LS~G~~~rv~laral~~---~p------~llll----------DEP~~~L------------------------D~  157 (223)
T TIGR03740       121 KAKQFSLGMKQRLGIAIALLN---HP------KLLIL----------DEPTNGL------------------------DP  157 (223)
T ss_pred             hHhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCccCC------------------------CH
Confidence            346899999999999998887   56      88888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+++|++-.... .|+.+-+
T Consensus       158 ~--~~~~l-------~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  197 (223)
T TIGR03740       158 I--GIQEL-------RELIRSFPEQGITVILSSHILSEVQQLADHIGII  197 (223)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence            4  55556       56777776554565566999887654 5766554

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=92.55  E-value=0.1  Score=51.32  Aligned_cols=74  Identities=24%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||..++||..|+.   +|      ++..+          ||-.+-+                        |.. 
T Consensus       128 ~~LS~G~~qrv~laral~~---~p------~lllL----------DEP~~gL------------------------D~~-  163 (232)
T PRK10771        128 GQLSGGQRQRVALARCLVR---EQ------PILLL----------DEPFSAL------------------------DPA-  163 (232)
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence            4899999999999998886   66      78888          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                       +...+       .++|.++... .-|=.+++|++-.... .|+.+-+
T Consensus       164 -~~~~~-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  203 (232)
T PRK10771        164 -LRQEM-------LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV  203 (232)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence             45555       6677787664 3455555999887655 5776555

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=92.48  E-value=0.1  Score=51.73  Aligned_cols=76  Identities=16%  Similarity=0.080  Sum_probs=53.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..|+-   +|      ++..+          ||-.+-+                        |.
T Consensus       132 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  168 (242)
T cd03295         132 YPHELSGGQQQRVGVARALAA---DP------PLLLM----------DEPFGAL------------------------DP  168 (242)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CH
Confidence            346899999999999998885   66      78888          7766655                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus       169 ~--~~~~l-------~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l  209 (242)
T cd03295         169 I--TRDQL-------QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM  209 (242)
T ss_pred             H--HHHHH-------HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            4  56666       6678888764 3454555999876554 5665543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=92.47  E-value=0.12  Score=51.68  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=54.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |..
T Consensus       135 ~~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~  171 (256)
T TIGR03873       135 MSTLSGGERQRVHVARALAQ---EP------KLLLL----------DEPTNHL------------------------DVR  171 (256)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCccccC------------------------CHH
Confidence            45899999999999999887   66      78888          7776666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                        +...+       .+.|.++....-|=.+++|++-... -+|+.+-+
T Consensus       172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (256)
T TIGR03873       172 --AQLET-------LALVRELAATGVTVVAALHDLNLAASYCDHVVVL  210 (256)
T ss_pred             --HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              55566       6778888755445455589887664 46766554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14079 recF recombination protein F; Provisional

Probab=92.46  E-value=2.2  Score=46.03  Aligned_cols=159  Identities=11%  Similarity=0.023  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Q psy834          392 MQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLI  471 (926)
Q Consensus       392 Lk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~  471 (926)
                      +.....+++.+|....+++..+.+...+  ...+...+.+..+-.+-...=...++.++..|.++|..|. ... .  |.
T Consensus       140 l~~~y~~~l~~y~k~lkqRn~lLk~~~~--~~l~~w~~~l~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~-~~~-~--l~  213 (349)
T PRK14079        140 LSARYAALLSAYERAVQQRNAALKSGGG--WGLHVWDDELVKLGDEIMALRRRALTRLSELAREAYAELG-SRK-P--LR  213 (349)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-c--EE
Confidence            3344467777888887777777764321  1244455555555555555556677888899999999872 111 1  11


Q ss_pred             hcCCCCcccc-hhh----hhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHH
Q psy834          472 VSGWPKKKEN-LVI----VVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAAL  546 (926)
Q Consensus       472 lSgwP~GkGN-LvI----v~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVAL  546 (926)
                      +.--++.... +.-    .+..++-        -|..       ..-|.-.-+.|.+.  |+.  --.-+|+|||.+++|
T Consensus       214 l~y~~~~~~~~~~~~l~~~~~~d~~--------~g~T-------~~GpHRdD~~~~~~--g~~--~~~~~S~Gqqr~~~l  274 (349)
T PRK14079        214 LELSESTAPEGYLAALEARRAEELA--------RGAT-------VVGPHRDDLVLTLE--GRP--AHRYASRGEARTVAL  274 (349)
T ss_pred             EEEecCcCHHHHHHHHHHhhHHHHH--------cCCC-------CCCCchhceEEEEC--CEe--hHHhCChhHHHHHHH
Confidence            1000110000 000    0000000        0000       01122222334442  332  224799999999999


Q ss_pred             HHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          547 AMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       547 ALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      |+.+|-..+--....-.|+..+          ||+-+-|
T Consensus       275 al~la~~~~~~~~~~~~pilLl----------Dd~~seL  303 (349)
T PRK14079        275 ALRLAEHRLLWEHFGEAPVLLV----------DDFTAEL  303 (349)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEE----------cccchhc
Confidence            9999922211111122589999          9988888

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=92.42  E-value=0.15  Score=45.06  Aligned_cols=26  Identities=31%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             ccccccCchhHH-HHHHHHHHHHHhcc
Q psy834          530 YVGIQHLSGGER-TLAALAMIFTIWKL  555 (926)
Q Consensus       530 ~QsIQQLSGGEK-SLVALALIFAIQKc  555 (926)
                      ...+..|||||| .+++|||..|+...
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~   53 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAAL   53 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHH
Confidence            568899999999 88888888887654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=92.36  E-value=0.13  Score=56.27  Aligned_cols=77  Identities=12%  Similarity=0.035  Sum_probs=54.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||--+=+                        |
T Consensus       387 ~~~~~LSgGq~qrv~la~al~~---~p------~illL----------DEPt~gL------------------------D  423 (491)
T PRK10982        387 TQIGSLSGGNQQKVIIGRWLLT---QP------EILML----------DEPTRGI------------------------D  423 (491)
T ss_pred             cccccCCcHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccc------------------------C
Confidence            4556999999999999998875   77      78888          6633333                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       +++|.++.....|=.+|+|+.-...+ .|+.+-+
T Consensus       424 ~~--~~~~~-------~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l  464 (491)
T PRK10982        424 VG--AKFEI-------YQLIAELAKKDKGIIIISSEMPELLGITDRILVM  464 (491)
T ss_pred             hh--HHHHH-------HHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence            33  44445       67788887776776677999776655 4666544

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.32  E-value=0.099  Score=53.10  Aligned_cols=73  Identities=12%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||...-+                        |..
T Consensus       140 ~~~LS~G~~qrl~laral~~---~p------~lllL----------DEP~~gL------------------------D~~  176 (271)
T PRK13632        140 PQNLSGGQKQRVAIASVLAL---NP------EIIIF----------DESTSML------------------------DPK  176 (271)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            36999999999999998885   55      88999          8877766                        555


Q ss_pred             CCchhhhhhcccCCCCChhhhccCC-CceeEeecChhhHHhhhhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t~sr~~~~~  657 (926)
                        +...+       .+.|.++.... .|-.+++|++-...-+|+.+
T Consensus       177 --~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~  213 (271)
T PRK13632        177 --GKREI-------KKIMVDLRKTRKKTLISITHDMDEAILADKVI  213 (271)
T ss_pred             --HHHHH-------HHHHHHHHHhcCcEEEEEEechhHHhhCCEEE
Confidence              55666       77888887653 45556699886555555554

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=92.32  E-value=0.11  Score=49.58  Aligned_cols=70  Identities=17%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      ||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-.  +
T Consensus       101 lS~G~~qr~~la~al~~---~p------~llil----------DEP~~~L------------------------D~~--~  135 (178)
T cd03229         101 LSGGQQQRVALARALAM---DP------DVLLL----------DEPTSAL------------------------DPI--T  135 (178)
T ss_pred             CCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCcccC------------------------CHH--H
Confidence            99999999999998887   56      78888          7766666                        555  6


Q ss_pred             hhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          616 LSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      ...+       .++|.++... ..|=.+|+|++-.... +|+.+
T Consensus       136 ~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~  172 (178)
T cd03229         136 RREV-------RALLKSLQAQLGITVVLVTHDLDEAARLADRVV  172 (178)
T ss_pred             HHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence            6666       6778888776 3454555998876654 45543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.30  E-value=0.12  Score=51.34  Aligned_cols=76  Identities=18%  Similarity=0.147  Sum_probs=53.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |
T Consensus       145 ~~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D  181 (253)
T PRK14267        145 DYPSNLSGGQRQRLVIARALAM---KP------KILLM----------DEPTANI------------------------D  181 (253)
T ss_pred             cChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------C
Confidence            3457999999999999998876   66      78888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++.. ..|=.+++|++-...+ +|+.+-+
T Consensus       182 ~~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  221 (253)
T PRK14267        182 PV--GTAKI-------EELLFELKK-EYTIVLVTHSPAQAARVSDYVAFL  221 (253)
T ss_pred             HH--HHHHH-------HHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEE
Confidence            44  55555       667777765 2455555999887554 6765443

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=92.29  E-value=0.12  Score=57.05  Aligned_cols=76  Identities=17%  Similarity=0.092  Sum_probs=55.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||++++||..|+.   +|      +|..+          ||-.+=+                        |.
T Consensus       165 ~~~~LSgGq~qrv~iA~al~~---~p------~lllL----------DEPt~~L------------------------D~  201 (520)
T TIGR03269       165 IARDLSGGEKQRVVLARQLAK---EP------FLFLA----------DEPTGTL------------------------DP  201 (520)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEe----------eCCcccC------------------------CH
Confidence            467899999999999999986   66      78888          7755555                        55


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +..++       -++|.++... ..|=.+|+|.+-...+ +|+.+-+
T Consensus       202 ~--~~~~l-------~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l  242 (520)
T TIGR03269       202 Q--TAKLV-------HNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL  242 (520)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            5  56666       6678888654 4565666999877654 5776544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=92.28  E-value=0.12  Score=51.12  Aligned_cols=75  Identities=16%  Similarity=0.051  Sum_probs=52.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |..
T Consensus       112 ~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D~~  148 (230)
T TIGR01184       112 PGQLSGGMKQRVAIARALSI---RP------KVLLL----------DEPFGAL------------------------DAL  148 (230)
T ss_pred             hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCcCC------------------------CHH
Confidence            46899999999999999887   66      78888          7755545                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                        +...+       -+.|.++... .-|=.+|+|++-... -+|+.+-+
T Consensus       149 --~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  188 (230)
T TIGR01184       149 --TRGNL-------QEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML  188 (230)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence              44455       5567777664 446566699987644 46766544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=92.26  E-value=0.13  Score=48.77  Aligned_cols=71  Identities=18%  Similarity=0.036  Sum_probs=52.2

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      |||||+.+++||..++.   +|      ++..+          ||-.+-+                        |..  +
T Consensus        96 LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~~--~  130 (173)
T cd03230          96 LSGGMKQRLALAQALLH---DP------ELLIL----------DEPTSGL------------------------DPE--S  130 (173)
T ss_pred             cCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------CHH--H
Confidence            99999999999999986   66      88888          8877777                        555  5


Q ss_pred             hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      ...+       .+.|.++.....|=++++|++-.... .|+.+-
T Consensus       131 ~~~l-------~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~  167 (173)
T cd03230         131 RREF-------WELLRELKKEGKTILLSSHILEEAERLCDRVAI  167 (173)
T ss_pred             HHHH-------HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence            5566       67788887654455555999876654 455443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=92.22  E-value=0.12  Score=52.57  Aligned_cols=74  Identities=19%  Similarity=0.066  Sum_probs=50.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |..
T Consensus       141 ~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~  177 (269)
T PRK11831        141 PSELSGGMARRAALARAIAL---EP------DLIMF----------DEPFVGQ------------------------DPI  177 (269)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CHH
Confidence            46899999999999998886   56      78888          6655544                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       .+.|.++... .-|=.+|+|+.-...+ +|+.+-
T Consensus       178 --~~~~l-------~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~  216 (269)
T PRK11831        178 --TMGVL-------VKLISELNSALGVTCVVVSHDVPEVLSIADHAYI  216 (269)
T ss_pred             --HHHHH-------HHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence              34444       5677787664 3455556999765554 566543

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=92.20  E-value=0.13  Score=51.98  Aligned_cols=75  Identities=20%  Similarity=0.125  Sum_probs=53.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |-.
T Consensus       145 ~~~LSgG~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~~  181 (265)
T PRK10575        145 VDSLSGGERQRAWIAMLVAQ---DS------RCLLL----------DEPTSAL------------------------DIA  181 (265)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            35899999999999999887   66      88888          8866666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       ..+|.+++.. .-|=.+++|++....+ +|+.+-+
T Consensus       182 --~~~~~-------~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l  221 (265)
T PRK10575        182 --HQVDV-------LALVHRLSQERGLTVIAVLHDINMAARYCDYLVAL  221 (265)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              45555       6678888765 3444444999876654 5766543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.19  E-value=0.1  Score=50.80  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||..++||..|+.   +|      ++..+          ||-.+-+                        |-. 
T Consensus       126 ~~LS~G~~qrl~la~al~~---~p------~llll----------DEPt~~L------------------------D~~-  161 (207)
T PRK13539        126 GYLSAGQKRRVALARLLVS---NR------PIWIL----------DEPTAAL------------------------DAA-  161 (207)
T ss_pred             hhcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence            4799999999999988887   56      78888          7755555                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       ....+       .+.|.++....-|=.+++|+...... ++.+.+
T Consensus       162 -~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~  198 (207)
T PRK13539        162 -AVALF-------AELIRAHLAQGGIVIAATHIPLGLPG-ARELDL  198 (207)
T ss_pred             -HHHHH-------HHHHHHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence             44455       67788876655565566998876665 666544

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=92.18  E-value=0.15  Score=51.45  Aligned_cols=78  Identities=14%  Similarity=0.036  Sum_probs=53.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhc---cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWK---LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQK---cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      +..||||||.+++||..|+...   .+|      +|..+          ||-.+-+                        
T Consensus       132 ~~~LSgGe~qrv~la~al~~~~~~~~~p------~lllL----------DEPt~~L------------------------  171 (258)
T PRK13548        132 YPQLSGGEQQRVQLARVLAQLWEPDGPP------RWLLL----------DEPTSAL------------------------  171 (258)
T ss_pred             cccCCHHHHHHHHHHHHHhcccccCCCC------CEEEE----------eCCcccC------------------------
Confidence            4699999999999999888532   456      78888          7766656                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhc-cCCCceeEeecChhhHHh-hhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVS-SSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~-~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      |..  +...+       .+.|.++. ....|=.+++|.+--..+ +|+.+-+
T Consensus       172 D~~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  214 (258)
T PRK13548        172 DLA--HQHHV-------LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL  214 (258)
T ss_pred             CHH--HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence            444  44555       56777877 444565555898876554 5766544

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=92.15  E-value=0.13  Score=50.92  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-
T Consensus       145 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  181 (252)
T PRK14239        145 SALGLSGGQQQRVCIARVLAT---SP------KIILL----------DEPTSAL------------------------DP  181 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccc------------------------CH
Confidence            456899999999999998875   66      78888          7755555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       -.+|.++.. ..|-.+|+|+.-...+ +|+.+-+
T Consensus       182 ~--~~~~l-------~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l  220 (252)
T PRK14239        182 I--SAGKI-------EETLLGLKD-DYTMLLVTRSMQQASRISDRTGFF  220 (252)
T ss_pred             H--HHHHH-------HHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEE
Confidence            3  44445       456777754 3566666999866544 6877655

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=92.15  E-value=0.15  Score=51.72  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=53.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       159 ~~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D  195 (267)
T PRK14235        159 EPGTGLSGGQQQRLCIARAIAV---SP------EVILM----------DEPCSAL------------------------D  195 (267)
T ss_pred             CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCcCC------------------------C
Confidence            3456899999999999999987   66      78888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v  659 (926)
                      ..  +...+       .+.|.+++. .-|=++|+|+.-....+ |+.+-+
T Consensus       196 ~~--~~~~l-------~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l  235 (267)
T PRK14235        196 PI--ATAKV-------EELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFF  235 (267)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEE
Confidence            44  44455       566777765 24656669998877554 665443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.14  E-value=0.15  Score=50.92  Aligned_cols=75  Identities=13%  Similarity=0.108  Sum_probs=53.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-
T Consensus       147 ~~~~LSgG~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  183 (254)
T PRK14273        147 NALSLSGGQQQRLCIARTLAI---EP------NVILM----------DEPTSAL------------------------DP  183 (254)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccc------------------------CH
Confidence            456899999999999998875   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .++|.++.. ..|=.+++|++-.... +|+.+-+
T Consensus       184 ~--~~~~l-------~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l  222 (254)
T PRK14273        184 I--STGKI-------EELIINLKE-SYTIIIVTHNMQQAGRISDRTAFF  222 (254)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  55555       667778754 3454455999887655 5665543

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.11  E-value=0.11  Score=53.13  Aligned_cols=75  Identities=15%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||-.|+.   +|      +|..+          ||..+-+                        |.+
T Consensus       138 ~~~LS~G~~qrv~lAraL~~---~p------~llll----------DEPt~~L------------------------D~~  174 (277)
T PRK13642        138 PARLSGGQKQRVAVAGIIAL---RP------EIIIL----------DESTSML------------------------DPT  174 (277)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            46899999999999999987   77      78888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|..-....+|+.+-+
T Consensus       175 --~~~~l-------~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l  213 (277)
T PRK13642        175 --GRQEI-------MRVIHEIKEKYQLTVLSITHDLDEAASSDRILVM  213 (277)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence              44455       5677777765 45656669998887777776543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.01  E-value=0.14  Score=52.43  Aligned_cols=75  Identities=12%  Similarity=0.056  Sum_probs=54.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||-.++.   +|      ++..+          ||-.+-+                        |..
T Consensus       136 ~~~LSgG~~qrv~laraL~~---~p------~llll----------DEPt~~L------------------------D~~  172 (274)
T PRK13647        136 PYHLSYGQKKRVAIAGVLAM---DP------DVIVL----------DEPMAYL------------------------DPR  172 (274)
T ss_pred             hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCcCC------------------------CHH
Confidence            34899999999999999887   66      77788          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       -++|.++....-|=++|+|+.-...+ .|+.+-+
T Consensus       173 --~~~~l-------~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l  211 (274)
T PRK13647        173 --GQETL-------MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL  211 (274)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              44555       56777887654566667999876644 6766544

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=91.98  E-value=0.14  Score=53.69  Aligned_cols=77  Identities=14%  Similarity=0.089  Sum_probs=55.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.++|||-.++.   +|      +|..+          ||..+-+                        |
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~---~P------~lLlL----------DEPt~~L------------------------D  197 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAM---EP------DFLVF----------DEPTAGL------------------------D  197 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------C
Confidence            3456899999999999999998   67      78888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhh-HHhhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT-RSRVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t-~sr~~~~~~v  659 (926)
                      -.  +...+       .+.|.++.....|=.+|+|+.-. ..-+|+.+-+
T Consensus       198 ~~--~~~~l-------~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl  238 (305)
T PRK13651        198 PQ--GVKEI-------LEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF  238 (305)
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence            44  45555       67788887655565566999764 4447766544

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=91.95  E-value=0.13  Score=49.84  Aligned_cols=75  Identities=19%  Similarity=0.069  Sum_probs=51.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       128 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  164 (214)
T cd03297         128 YPAQLSGGEKQRVALARALAA---QP------ELLLL----------DEPFSAL------------------------DR  164 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            346899999999999999886   66      78888          7744444                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +...+       .+.|.+++.. .-|=.+++|+.-.... .|+.+-
T Consensus       165 ~--~~~~l-------~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  204 (214)
T cd03297         165 A--LRLQL-------LPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV  204 (214)
T ss_pred             H--HHHHH-------HHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE
Confidence            3  44455       5677777665 4455555999876644 565543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.95  E-value=0.13  Score=52.60  Aligned_cols=75  Identities=16%  Similarity=0.110  Sum_probs=53.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |-.
T Consensus       135 ~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~~  171 (275)
T PRK13639        135 PHHLSGGQKKRVAIAGILAM---KP------EIIVL----------DEPTSGL------------------------DPM  171 (275)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CHH
Confidence            45899999999999999876   66      88888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       -++|.++....-|=.+|+|+...-.+ +|+.+-+
T Consensus       172 --~~~~l-------~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l  210 (275)
T PRK13639        172 --GASQI-------MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM  210 (275)
T ss_pred             --HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence              44455       56677776654454555999876655 6766544

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.94  E-value=0.11  Score=53.16  Aligned_cols=74  Identities=12%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||.+++||-.|+.   +|      ++..+          ||..+-+                        |-. 
T Consensus       139 ~~LSgGq~qrv~lAral~~---~p------~lLlL----------DEPt~~L------------------------D~~-  174 (279)
T PRK13650        139 ARLSGGQKQRVAIAGAVAM---RP------KIIIL----------DEATSML------------------------DPE-  174 (279)
T ss_pred             ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CHH-
Confidence            6899999999999999988   77      78888          8877777                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +...+       .+.|.++... .-|=.+|+|+.-.....|+.+-+
T Consensus       175 -~~~~l-------~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l  213 (279)
T PRK13650        175 -GRLEL-------IKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM  213 (279)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence             45555       5667777764 44555669998776667776544

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=91.93  E-value=0.14  Score=50.89  Aligned_cols=75  Identities=16%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      ++..+          ||..+.+                        |.. 
T Consensus       129 ~~lS~G~~qrl~laral~~---~p------~llll----------DEP~~~L------------------------D~~-  164 (237)
T TIGR00968       129 NQLSGGQRQRVALARALAV---EP------QVLLL----------DEPFGAL------------------------DAK-  164 (237)
T ss_pred             hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence            5899999999999999887   66      78888          7776666                        555 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhccee
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLTIQ  660 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~v~  660 (926)
                       +...+       -..|.++... ..|=.+++|++-.. .-.|+.+-+.
T Consensus       165 -~~~~~-------~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~  205 (237)
T TIGR00968       165 -VRKEL-------RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS  205 (237)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence             56666       5678888765 45556669999864 4478776553

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=91.93  E-value=0.13  Score=54.32  Aligned_cols=75  Identities=16%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||+++|||..++.   +|      ++..+          ||--+-+                        |..
T Consensus        98 ~~~LSgGq~qRvalaraL~~---~p------~lllL----------DEP~s~L------------------------D~~  134 (325)
T TIGR01187        98 PHQLSGGQQQRVALARALVF---KP------KILLL----------DEPLSAL------------------------DKK  134 (325)
T ss_pred             hhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            46899999999999999986   66      78888          7755555                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|||+.....+ .|+.+-+
T Consensus       135 --~~~~l-------~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl  174 (325)
T TIGR01187       135 --LRDQM-------QLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM  174 (325)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              34444       5667777665 3455666999876444 5766543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=91.89  E-value=0.13  Score=54.82  Aligned_cols=75  Identities=16%  Similarity=0.043  Sum_probs=51.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.++|||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       129 ~~~LSgGqkqRvalAraL~~---~p------~lllL----------DEPts~L------------------------D~~  165 (354)
T TIGR02142       129 PGRLSGGEKQRVAIGRALLS---SP------RLLLM----------DEPLAAL------------------------DDP  165 (354)
T ss_pred             hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCcCC------------------------CHH
Confidence            36899999999999999886   67      78888          7755555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       ...|.++... .-|=.+|+|++-.... .|+.+-+
T Consensus       166 --~~~~l-------~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l  205 (354)
T TIGR02142       166 --RKYEI-------LPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL  205 (354)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence              34444       5667777665 3455556999876554 5765444

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=91.89  E-value=0.11  Score=51.81  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=29.1

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      ...+..||||||.++++|.+||+..+..     .|+..+
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~-----p~llll  154 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTR-----CPFRVV  154 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccC-----CCEEEE
Confidence            3456799999999999999999888777     688888

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=91.89  E-value=0.12  Score=57.24  Aligned_cols=77  Identities=16%  Similarity=0.084  Sum_probs=55.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||++|+||..|+.   +|      .|..+          ||-.+-|                        |
T Consensus       152 ~~~~~LSgGe~qrv~iAraL~~---~p------~llll----------DEPt~~L------------------------D  188 (529)
T PRK15134        152 DYPHQLSGGERQRVMIAMALLT---RP------ELLIA----------DEPTTAL------------------------D  188 (529)
T ss_pred             hCCcccCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCcc------------------------C
Confidence            4567999999999999999985   77      78888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .++|.+++.. .-|=.+|+|+.-...+ +|+.+-+
T Consensus       189 ~~--~~~~l-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l  230 (529)
T PRK15134        189 VS--VQAQI-------LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM  230 (529)
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence            44  45555       5678887664 4555566999866544 5776544

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=91.88  E-value=0.15  Score=50.55  Aligned_cols=73  Identities=12%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||.+++||..++.   +|      +|..+          ||-.+-+                        |..  
T Consensus       151 ~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~~--  185 (252)
T CHL00131        151 GFSGGEKKRNEILQMALL---DS------ELAIL----------DETDSGL------------------------DID--  185 (252)
T ss_pred             CCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CHH--
Confidence            599999999999999886   66      78888          7755555                        444  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v  659 (926)
                      +...+       .+.|.++....-|=.+|+|++-....  .|+.+-+
T Consensus       186 ~~~~l-------~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l  225 (252)
T CHL00131        186 ALKII-------AEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM  225 (252)
T ss_pred             HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence            55556       56788887655565555898776665  4665544

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=91.86  E-value=0.12  Score=49.82  Aligned_cols=72  Identities=11%  Similarity=0.010  Sum_probs=51.1

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      +||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-.  
T Consensus       108 ~LSgGe~qrv~la~al~~---~p------~vlll----------DEP~~~L------------------------D~~--  142 (192)
T cd03232         108 GLSVEQRKRLTIGVELAA---KP------SILFL----------DEPTSGL------------------------DSQ--  142 (192)
T ss_pred             cCCHHHhHHHHHHHHHhc---CC------cEEEE----------eCCCcCC------------------------CHH--
Confidence            899999999999998887   55      78888          7766666                        444  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChh--hHHhhhhhcc
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT--TRSRVQSSLT  658 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~--t~sr~~~~~~  658 (926)
                      +...+       ...|.+++...-|=++|+|++-  ....+|+.+-
T Consensus       143 ~~~~l-------~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~  181 (192)
T cd03232         143 AAYNI-------VRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL  181 (192)
T ss_pred             HHHHH-------HHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE
Confidence            45555       5567777765455556699975  2566776543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=91.84  E-value=0.15  Score=50.40  Aligned_cols=76  Identities=13%  Similarity=0.039  Sum_probs=50.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.
T Consensus       134 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  170 (241)
T PRK10895        134 MGQSLSGGERRRVEIARALAA---NP------KFILL----------DEPFAGV------------------------DP  170 (241)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            346899999999999998876   55      78888          6655555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v  659 (926)
                      .  +...+       .++|.++....-|=.+++|++-.. .-+|+.+-+
T Consensus       171 ~--~~~~l-------~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l  210 (241)
T PRK10895        171 I--SVIDI-------KRIIEHLRDSGLGVLITDHNVRETLAVCERAYIV  210 (241)
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence            3  33344       456777766555656669998544 345665444

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=91.77  E-value=0.13  Score=56.67  Aligned_cols=76  Identities=9%  Similarity=0.059  Sum_probs=53.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||++++||..|+.   +|      +|..+          ||-.+=+                        |.
T Consensus       140 ~~~~LSgGqkqrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D~  176 (506)
T PRK13549        140 PVGNLGLGQQQLVEIAKALNK---QA------RLLIL----------DEPTASL------------------------TE  176 (506)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CH
Confidence            457899999999999999985   67      78888          7754444                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.....|=.+|+|+.-.... +|+.+-+
T Consensus       177 ~--~~~~l-------~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l  216 (506)
T PRK13549        177 S--ETAVL-------LDIIRDLKAHGIACIYISHKLNEVKAISDTICVI  216 (506)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence            4  44444       56777876554565666999876655 5776544

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=91.75  E-value=0.15  Score=57.23  Aligned_cols=73  Identities=18%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||=.+.-   +|      |+..+          ||--+-+                        |.. 
T Consensus       474 ~~LSgGqrqRialARall~---~~------~ilil----------DE~ts~l------------------------D~~-  509 (574)
T PRK11160        474 RQLSGGEQRRLGIARALLH---DA------PLLLL----------DEPTEGL------------------------DAE-  509 (574)
T ss_pred             CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence            4799999999999976653   55      89999          7755555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-.++       .+.|.+... ..|-.+|+|.+-+...+|+.+-+
T Consensus       510 -t~~~i-------~~~l~~~~~-~~tviiitHr~~~~~~~d~i~~l  546 (574)
T PRK11160        510 -TERQI-------LELLAEHAQ-NKTVLMITHRLTGLEQFDRICVM  546 (574)
T ss_pred             -HHHHH-------HHHHHHHcC-CCEEEEEecChhHHHhCCEEEEE
Confidence             33444       344555543 46888889999999999998766

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.75  E-value=0.12  Score=52.21  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=54.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |..
T Consensus       140 ~~~LS~G~~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D~~  176 (269)
T PRK13648        140 PNALSGGQKQRVAIAGVLAL---NP------SVIIL----------DEATSML------------------------DPD  176 (269)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            45899999999999998887   66      88888          8877666                        554


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       ...|.++... .-|=.+|+|++-....+|+.+-+
T Consensus       177 --~~~~l-------~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l  215 (269)
T PRK13648        177 --ARQNL-------LDLVRKVKSEHNITIISITHDLSEAMEADHVIVM  215 (269)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEE
Confidence              45555       5667777654 44555569998766667766544

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=91.73  E-value=0.14  Score=54.35  Aligned_cols=75  Identities=11%  Similarity=0.100  Sum_probs=52.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||++++||..++.   +|      .|..+          ||-..-|                        |..
T Consensus       152 p~~LSgGq~QRv~iArAL~~---~P------~lLil----------DEPts~L------------------------D~~  188 (327)
T PRK11308        152 PHMFSGGQRQRIAIARALML---DP------DVVVA----------DEPVSAL------------------------DVS  188 (327)
T ss_pred             CccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCccC------------------------CHH
Confidence            46999999999999999988   77      67777          7765555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       -++|.++... .-|=.+|||+.-...+ .|+.+-+
T Consensus       189 --~~~~i-------~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm  228 (327)
T PRK11308        189 --VQAQV-------LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM  228 (327)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              33333       5567777665 3455556999888876 5666543

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.72  E-value=0.13  Score=52.02  Aligned_cols=75  Identities=15%  Similarity=0.046  Sum_probs=52.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |..
T Consensus       126 ~~~LSgGq~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D~~  162 (255)
T PRK11248        126 IWQLSGGQRQRVGIARALAA---NP------QLLLL----------DEPFGAL------------------------DAF  162 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            46899999999999999885   66      78888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... ..|=.+|+|++-...+ +|+.+-+
T Consensus       163 --~~~~l-------~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  202 (255)
T PRK11248        163 --TREQM-------QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL  202 (255)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              55556       6677777543 4454555999876655 4665433

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=91.68  E-value=0.15  Score=57.54  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||-.|.-   +|      |+..+          ||--+-+                        |.. 
T Consensus       470 ~~LSgGq~qrl~lARall~---~p------~ilil----------DEpts~L------------------------D~~-  505 (585)
T TIGR01192       470 NRLSGGERQRLAIARAILK---NA------PILVL----------DEATSAL------------------------DVE-  505 (585)
T ss_pred             CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------CHH-
Confidence            4699999999999987774   55      89999          7765555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       .+.|.++.. ..|-.+|+|++-+...+|+.+-+
T Consensus       506 -~~~~i-------~~~l~~~~~-~~tvI~isH~~~~~~~~d~i~~l  542 (585)
T TIGR01192       506 -TEARV-------KNAIDALRK-NRTTFIIAHRLSTVRNADLVLFL  542 (585)
T ss_pred             -HHHHH-------HHHHHHHhC-CCEEEEEEcChHHHHcCCEEEEE
Confidence             44444       455666543 56777779999999999998766

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=91.67  E-value=0.12  Score=54.86  Aligned_cols=76  Identities=16%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..|+.   +|      +|..+          ||-.+-|                        |.
T Consensus       137 ~~~~LSgGq~qRv~lAraL~~---~p------~iLlL----------DEPts~L------------------------D~  173 (343)
T PRK11153        137 YPAQLSGGQKQRVAIARALAS---NP------KVLLC----------DEATSAL------------------------DP  173 (343)
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            346899999999999998886   67      78888          7755444                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .++|.++... .-|=.+++|+.-...+ +|+.+-+
T Consensus       174 ~--~~~~l-------~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l  214 (343)
T PRK11153        174 A--TTRSI-------LELLKDINRELGLTIVLITHEMDVVKRICDRVAVI  214 (343)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  44444       6678888765 3455555898876554 6766544

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=91.66  E-value=0.16  Score=52.22  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=55.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHh------ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIW------KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN  605 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQ------KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~  605 (926)
                      .+.+||||||.+++||..|+..      ..+|      ++..+          ||-.+-+                    
T Consensus       142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p------~lllL----------DEPt~~L--------------------  185 (272)
T PRK13547        142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPP------RYLLL----------DEPTAAL--------------------  185 (272)
T ss_pred             CcccCCHHHHHHHHHHHHHhccccccccCCCC------CEEEE----------cCccccC--------------------
Confidence            4568999999999999888752      1466      77788          7755555                    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          606 PNPNSRANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                          |-.  +..++       .+.|.++... .-|=.+|+|++-...+ +|+.+-+
T Consensus       186 ----D~~--~~~~l-------~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l  228 (272)
T PRK13547        186 ----DLA--HQHRL-------LDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML  228 (272)
T ss_pred             ----CHH--HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence                444  56666       6778888765 4565666999877654 6766544

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=91.62  E-value=0.14  Score=52.96  Aligned_cols=76  Identities=14%  Similarity=-0.002  Sum_probs=53.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       132 ~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D~  168 (303)
T TIGR01288       132 RVALLSGGMKRRLTLARALIN---DP------QLLIL----------DEPTTGL------------------------DP  168 (303)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            346899999999999999875   66      78888          6655555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+++|+.--... +|+.+-+
T Consensus       169 ~--~~~~l-------~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l  208 (303)
T TIGR01288       169 H--ARHLI-------WERLRSLLARGKTILLTTHFMEEAERLCDRLCVL  208 (303)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            3  44455       67788887655565666999876654 5765544

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=91.60  E-value=0.16  Score=50.15  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-
T Consensus       134 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  170 (225)
T PRK10247        134 NIAELSGGEKQRISLIRNLQF---MP------KVLLL----------DEITSAL------------------------DE  170 (225)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            345899999999999998886   55      78888          7765555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhccee
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v~  660 (926)
                      .  +...+       .+.|.++... ..|=.+++|+.-....+|+.+-+.
T Consensus       171 ~--~~~~l-------~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~  211 (225)
T PRK10247        171 S--NKHNV-------NEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ  211 (225)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence            4  55555       5667887664 445555589886666677766553

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.59  E-value=0.13  Score=52.78  Aligned_cols=75  Identities=11%  Similarity=0.131  Sum_probs=55.4

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||-.|+.   +|      +|..+          ||..+-+                        |-+
T Consensus       138 ~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~gL------------------------D~~  174 (279)
T PRK13635        138 PHRLSGGQKQRVAIAGVLAL---QP------DIIIL----------DEATSML------------------------DPR  174 (279)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            35899999999999999887   66      78888          7766666                        544


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|++-....+|+.+-+
T Consensus       175 --~~~~l-------~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l  213 (279)
T PRK13635        175 --GRREV-------LETVRQLKEQKGITVLSITHDLDEAAQADRVIVM  213 (279)
T ss_pred             --HHHHH-------HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEE
Confidence              45555       6678888765 45556669998777777776554

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=91.56  E-value=0.17  Score=56.05  Aligned_cols=74  Identities=20%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+.+|||=.+.-   +|      |+..+          ||--+=+                        |.. 
T Consensus       453 ~~LSgGq~qrl~lARall~---~~------~ilil----------DEpts~L------------------------D~~-  488 (544)
T TIGR01842       453 ATLSGGQRQRIALARALYG---DP------KLVVL----------DEPNSNL------------------------DEE-  488 (544)
T ss_pred             CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccc------------------------CHH-
Confidence            5799999999999976632   45      89999          7744444                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-.++       .+.|.++.....|-.+|+|++-+...+|+.+-+
T Consensus       489 -~~~~i-------~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l  526 (544)
T TIGR01842       489 -GEQAL-------ANAIKALKARGITVVVITHRPSLLGCVDKILVL  526 (544)
T ss_pred             -HHHHH-------HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence             55555       455666654457888889999999889987655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=91.56  E-value=0.16  Score=49.19  Aligned_cols=73  Identities=18%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||.+++||..++.   +|      ++..+          ||-.+-+                        |..  
T Consensus       111 ~LS~G~~qrv~laral~~---~p------~illl----------DEP~~~L------------------------D~~--  145 (194)
T cd03213         111 GLSGGERKRVSIALELVS---NP------SLLFL----------DEPTSGL------------------------DSS--  145 (194)
T ss_pred             cCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCcCC------------------------CHH--
Confidence            799999999999998886   66      78888          7766666                        444  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChh--hHHhhhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT--TRSRVQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~--t~sr~~~~~~v  659 (926)
                      +...+       ...|.++....-|=.+++|++-  -....|+.+-+
T Consensus       146 ~~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l  185 (194)
T cd03213         146 SALQV-------MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL  185 (194)
T ss_pred             HHHHH-------HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence            33444       5567777655556566699874  33446766543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=91.54  E-value=0.15  Score=52.80  Aligned_cols=74  Identities=9%  Similarity=-0.046  Sum_probs=51.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       121 ~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D~  157 (302)
T TIGR01188       121 PVGTYSGGMRRRLDIAASLIH---QP------DVLFL----------DEPTTGL------------------------DP  157 (302)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            456899999999999998876   66      78888          6644444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  +...+       .+.|.++....-|=.+++|+.-...+ +|+.+
T Consensus       158 ~--~~~~l-------~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~  195 (302)
T TIGR01188       158 R--TRRAI-------WDYIRALKEEGVTILLTTHYMEEADKLCDRIA  195 (302)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence            3  44455       67788887665565555998876655 56544

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.51  E-value=0.18  Score=50.11  Aligned_cols=75  Identities=19%  Similarity=0.169  Sum_probs=52.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       145 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  181 (252)
T PRK14255        145 SALSLSGGQQQRVCIARVLAV---KP------DVILL----------DEPTSAL------------------------DP  181 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence            456999999999999999887   66      68888          6655555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .|=.+|+|++-.... +|+.+-+
T Consensus       182 ~--~~~~l-------~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~l  220 (252)
T PRK14255        182 I--SSTQI-------ENMLLELRDQ-YTIILVTHSMHQASRISDKTAFF  220 (252)
T ss_pred             H--HHHHH-------HHHHHHHHhC-CEEEEEECCHHHHHHhCCEEEEE
Confidence            4  44555       5677777653 455555999876544 6776544

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.50  E-value=0.19  Score=51.20  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=53.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       150 ~~~~~LS~G~~qrl~laral~~---~p------~lllL----------DEPt~gL------------------------D  186 (269)
T PRK14259        150 ESGYSLSGGQQQRLCIARTIAI---EP------EVILM----------DEPCSAL------------------------D  186 (269)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------C
Confidence            3456899999999999998886   66      88888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhccee
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTIQ  660 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v~  660 (926)
                      ..  +..++       .+.|.++.. .-|=.+|+|++-.. .-.|+.+-+.
T Consensus       187 ~~--~~~~l-------~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        187 PI--STLKI-------EETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            44  55556       677888854 34545558987544 4456665443

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=91.50  E-value=0.16  Score=55.58  Aligned_cols=76  Identities=7%  Similarity=0.030  Sum_probs=54.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||++++||..|+.   +|      ++..+          ||-.+=+                        |.
T Consensus       131 ~~~~LSgGq~qrv~lA~al~~---~p------~lllL----------DEPt~~L------------------------D~  167 (491)
T PRK10982        131 KVATLSVSQMQMIEIAKAFSY---NA------KIVIM----------DEPTSSL------------------------TE  167 (491)
T ss_pred             chhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------CH
Confidence            467899999999999999886   66      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.+++....|=.+|+|++--..+ +|+.+-+
T Consensus       168 ~--~~~~l-------~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l  207 (491)
T PRK10982        168 K--EVNHL-------FTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL  207 (491)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            4  45555       56678887655565555998876554 5666544

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=91.49  E-value=0.17  Score=49.18  Aligned_cols=74  Identities=9%  Similarity=0.061  Sum_probs=53.8

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||..++||..++.   +|      +|..+          ||--+-+                        |.. 
T Consensus       103 ~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~~-  138 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLL---EP------DLAIL----------DEPDSGL------------------------DID-  138 (200)
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH-
Confidence            6899999999999999885   56      78888          7755555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v  659 (926)
                       +...+       .+.|.++....-|=.+++|++-....  .|+.+-+
T Consensus       139 -~~~~l-------~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l  178 (200)
T cd03217         139 -ALRLV-------AEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVL  178 (200)
T ss_pred             -HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEE
Confidence             55566       67788876544455556999887764  5776555

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=91.48  E-value=0.21  Score=55.05  Aligned_cols=77  Identities=10%  Similarity=0.032  Sum_probs=53.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||--+-+                        |
T Consensus       405 ~~~~~LSgGq~qrv~lAral~~---~p------~lLlL----------DEPt~~L------------------------D  441 (510)
T PRK09700        405 QNITELSGGNQQKVLISKWLCC---CP------EVIIF----------DEPTRGI------------------------D  441 (510)
T ss_pred             CccccCChHHHHHHHHHHHHhc---CC------CEEEE----------CCCCCCc------------------------C
Confidence            4567899999999999999885   56      88998          7744444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++....-|=.+|+|++--... .|+.+-+
T Consensus       442 ~~--~~~~l-------~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l  482 (510)
T PRK09700        442 VG--AKAEI-------YKVMRQLADDGKVILMVSSELPEIITVCDRIAVF  482 (510)
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            44  45555       56788877665565555999765544 4655433

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.48  E-value=0.15  Score=50.56  Aligned_cols=76  Identities=17%  Similarity=0.091  Sum_probs=52.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       142 ~~~~~LS~Gq~qr~~la~al~~---~p------~llll----------DEP~~~L------------------------D  178 (250)
T PRK14262        142 KPGTRLSGGQQQRLCIARALAV---EP------EVILL----------DEPTSAL------------------------D  178 (250)
T ss_pred             CChhhcCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCcccc------------------------C
Confidence            3456899999999999999887   56      78888          7766655                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +..-+       .+.|.+++. ..|=.+|+|++-.... .|+.+-+
T Consensus       179 ~~--~~~~l-------~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l  218 (250)
T PRK14262        179 PI--ATQRI-------EKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFM  218 (250)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  44444       566777765 3455566999876544 6666443

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=91.45  E-value=0.2  Score=49.78  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||..+-+                        |.
T Consensus       143 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  179 (250)
T PRK14240        143 SALGLSGGQQQRLCIARALAV---EP------EVLLM----------DEPTSAL------------------------DP  179 (250)
T ss_pred             CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999999887   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. ..|=.+|+|+.-.... .|+.+-+
T Consensus       180 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l  218 (250)
T PRK14240        180 I--STLKI-------EELIQELKK-DYTIVIVTHNMQQASRISDKTAFF  218 (250)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEE
Confidence            4  44444       566777754 3465666998765444 5665444

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=91.42  E-value=0.17  Score=61.33  Aligned_cols=78  Identities=23%  Similarity=0.114  Sum_probs=60.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      +.+..|||||+++++||..++.   +|     . .++++          ||-.+=|                        
T Consensus       483 r~~~tLSGGE~QRv~LA~aL~~---~~-----~~~llIL----------DEPtagL------------------------  520 (924)
T TIGR00630       483 RAAGTLSGGEAQRIRLATQIGS---GL-----TGVLYVL----------DEPSIGL------------------------  520 (924)
T ss_pred             CCcCcCCHHHHHHHHHHHHHhh---CC-----CCcEEEE----------cCCccCC------------------------
Confidence            5678999999999999988875   33     2 48888          7766655                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |..  ...++       .+.|.++....+|=.+|+|++-.+..+|+.+-+
T Consensus       521 D~~--~~~~L-------~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~L  561 (924)
T TIGR00630       521 HQR--DNERL-------INTLKRLRDLGNTVIVVEHDEETIRAADYVIDI  561 (924)
T ss_pred             CHH--HHHHH-------HHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEe
Confidence            444  56677       677888887788888889999988888887655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.42  E-value=0.17  Score=52.12  Aligned_cols=77  Identities=13%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||.+++||-.++.   +|      +|..+          ||..+.+                        |
T Consensus       141 ~~~~~LSgGq~qrv~laraL~~---~p------~illl----------DEPt~~L------------------------D  177 (286)
T PRK13646        141 QSPFQMSGGQMRKIAIVSILAM---NP------DIIVL----------DEPTAGL------------------------D  177 (286)
T ss_pred             CCcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------C
Confidence            3456899999999999999998   77      78888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .++|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus       178 ~~--~~~~l-------~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l  219 (286)
T PRK13646        178 PQ--SKRQV-------MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM  219 (286)
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            44  44555       6678887654 4455666999876655 4776554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=91.41  E-value=0.14  Score=56.62  Aligned_cols=77  Identities=12%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       421 ~~~~~LSgG~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D  457 (529)
T PRK15134        421 RYPAEFSGGQRQRIAIARALIL---KP------SLIIL----------DEPTSSL------------------------D  457 (529)
T ss_pred             cCCccCCHHHHHHHHHHHHHhC---CC------CEEEe----------eCCcccc------------------------C
Confidence            3456899999999999999985   66      88999          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .++|.+++.. ..|=.+|+|+.-.... +|+.+-+
T Consensus       458 ~~--~~~~l-------~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l  499 (529)
T PRK15134        458 KT--VQAQI-------LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL  499 (529)
T ss_pred             HH--HHHHH-------HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            44  55555       6778888765 4454555999876655 6766544

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=91.40  E-value=0.17  Score=50.42  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=52.0

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-. 
T Consensus       145 ~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~~-  180 (252)
T TIGR03005       145 AQLSGGQQQRVAIARALAM---RP------KVMLF----------DEVTSAL------------------------DPE-  180 (252)
T ss_pred             hhcCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH-
Confidence            5899999999999998875   66      67888          7766666                        433 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                       +...+       .+.|.++... .-|=.+|+|++-... -+|+.+-+
T Consensus       181 -~~~~l-------~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  220 (252)
T TIGR03005       181 -LVGEV-------LNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF  220 (252)
T ss_pred             -HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence             44555       6678887764 345455599987654 46766543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=91.39  E-value=0.17  Score=56.29  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||++.|||=.|-    +.     +||.++          ||--+-+                        |.. 
T Consensus       464 ~~LSgGQrQrlaiARall----~~-----~~ILIL----------DEaTSal------------------------D~~-  499 (567)
T COG1132         464 VNLSGGQRQRLAIARALL----RN-----PPILIL----------DEATSAL------------------------DTE-  499 (567)
T ss_pred             ccCCHHHHHHHHHHHHHh----cC-----CCEEEE----------ecccccc------------------------CHH-
Confidence            379999999999997664    34     489999          7755555                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee---eecCCCC
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ---SAEQGSP  667 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~---~aE~G~~  667 (926)
                       +-...       ++-+.++.. ..|-++|.|++-|....|+.+=+.   ..|.|.+
T Consensus       500 -tE~~I-------~~~l~~l~~-~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h  547 (567)
T COG1132         500 -TEALI-------QDALKKLLK-GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH  547 (567)
T ss_pred             -hHHHH-------HHHHHHHhc-CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence             22222       333444443 258899999999999999987552   4566665

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=91.38  E-value=0.18  Score=51.32  Aligned_cols=75  Identities=15%  Similarity=0.063  Sum_probs=51.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |-.
T Consensus       158 ~~~LS~Gq~qrv~lAral~~---~p------~illL----------DEPt~~L------------------------D~~  194 (269)
T cd03294         158 PDELSGGMQQRVGLARALAV---DP------DILLM----------DEAFSAL------------------------DPL  194 (269)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CHH
Confidence            35899999999999999885   66      78888          7755555                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... ..|=.+++|+.-...+ .|+.+-+
T Consensus       195 --~~~~l-------~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l  234 (269)
T cd03294         195 --IRREM-------QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM  234 (269)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence              34444       5667777654 3455555999876554 5665544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=91.36  E-value=0.17  Score=56.59  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||-.+.-   +|      ||..+          ||-.+-+                        |.. 
T Consensus       469 ~~LSgGq~qRlalaRall~---~~------~ilil----------DE~ts~L------------------------D~~-  504 (555)
T TIGR01194       469 TALSTGQQKRLALICAWLE---DR------PILLF----------DEWAADQ------------------------DPA-  504 (555)
T ss_pred             ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------CHH-
Confidence            6899999999999975543   55      89999          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+.      ..++.++.....|-.+|+|++-+...+|+.+-+
T Consensus       505 -~~~~i~------~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l  543 (555)
T TIGR01194       505 -FKRFFY------EELLPDLKRQGKTIIIISHDDQYFELADQIIKL  543 (555)
T ss_pred             -HHHHHH------HHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEE
Confidence             444441      113344444567888889999999999988765

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=91.33  E-value=0.15  Score=51.47  Aligned_cols=76  Identities=12%  Similarity=0.016  Sum_probs=53.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       147 ~~~~LSgGe~qrv~laral~~---~p------~illL----------DEPt~~L------------------------D~  183 (265)
T TIGR02769       147 LPRQLSGGQLQRINIARALAV---KP------KLIVL----------DEAVSNL------------------------DM  183 (265)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            445899999999999988875   66      78888          7755555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|++..... +|+.+-+
T Consensus       184 ~--~~~~l-------~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l  224 (265)
T TIGR02769       184 V--LQAVI-------LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM  224 (265)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence            3  34444       5567777654 4565666999877664 6776655

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=91.28  E-value=0.14  Score=60.23  Aligned_cols=72  Identities=17%  Similarity=0.090  Sum_probs=53.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      -..||||||+..|||-.|--   +|      +|-.+          ||=-+-+                        |. 
T Consensus       607 G~~LSGGQrQrlalARaLl~---~P------~ILlL----------DEaTSaL------------------------D~-  642 (709)
T COG2274         607 GANLSGGQRQRLALARALLS---KP------KILLL----------DEATSAL------------------------DP-  642 (709)
T ss_pred             CCCCCHHHHHHHHHHHHhcc---CC------CEEEE----------eCccccc------------------------CH-
Confidence            35799999999999987644   78      88898          7755555                        22 


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~  657 (926)
                        +-++.      .++-|.++... .|+++|+|++-|-.++|+.+
T Consensus       643 --~sE~~------I~~~L~~~~~~-~T~I~IaHRl~ti~~adrIi  678 (709)
T COG2274         643 --ETEAI------ILQNLLQILQG-RTVIIIAHRLSTIRSADRII  678 (709)
T ss_pred             --hHHHH------HHHHHHHHhcC-CeEEEEEccchHhhhccEEE
Confidence              33333      15556666654 89999999999999999966

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=91.27  E-value=0.19  Score=47.72  Aligned_cols=73  Identities=22%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-.
T Consensus        96 ~~~LS~G~~qrv~laral~~---~p------~~lll----------DEP~~~L------------------------D~~  132 (178)
T cd03247          96 GRRFSGGERQRLALARILLQ---DA------PIVLL----------DEPTVGL------------------------DPI  132 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------CHH
Confidence            77899999999999998885   66      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~  658 (926)
                        ....+       .+.|.++.. .-|=.+++|++-.....|+.+-
T Consensus       133 --~~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~  168 (178)
T cd03247         133 --TERQL-------LSLIFEVLK-DKTLIWITHHLTGIEHMDKILF  168 (178)
T ss_pred             --HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEE
Confidence              44445       455666643 3455556999887776666543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=91.24  E-value=0.17  Score=55.71  Aligned_cols=77  Identities=6%  Similarity=0.029  Sum_probs=54.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++|+||..|+.   +|      +|..+          ||-.+=+                        |
T Consensus       141 ~~~~~LSgG~~qrv~ia~al~~---~p------~lllL----------DEPt~~L------------------------D  177 (510)
T PRK09700        141 EKVANLSISHKQMLEIAKTLML---DA------KVIIM----------DEPTSSL------------------------T  177 (510)
T ss_pred             cchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------C
Confidence            3456899999999999999986   67      78888          7755555                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .++|.+++...-|=.+|+|+.-.... +|+.+-+
T Consensus       178 ~~--~~~~l-------~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l  218 (510)
T PRK09700        178 NK--EVDYL-------FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM  218 (510)
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  55566       67788887654454555998766554 5665544

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=91.22  E-value=0.19  Score=47.74  Aligned_cols=70  Identities=20%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||.+++||-.++.   +|      ++..+          ||-.+-+                        |.
T Consensus        88 ~~~~LS~G~~~rv~laral~~---~p------~~lll----------DEPt~~L------------------------D~  124 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLH---KP------KFVFL----------DEATSAL------------------------DE  124 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccc------------------------CH
Confidence            467899999999999988875   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhh
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSS  656 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~  656 (926)
                      .  +..++       .+.|.++   ..|-.+|+|++....-.|+.
T Consensus       125 ~--~~~~l-------~~~l~~~---~~tiiivsh~~~~~~~~d~i  157 (166)
T cd03223         125 E--SEDRL-------YQLLKEL---GITVISVGHRPSLWKFHDRV  157 (166)
T ss_pred             H--HHHHH-------HHHHHHh---CCEEEEEeCChhHHhhCCEE
Confidence            4  45555       4455555   24556669998766555554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=91.22  E-value=0.16  Score=51.85  Aligned_cols=75  Identities=19%  Similarity=0.047  Sum_probs=51.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       131 ~~~LSgGqkqrl~laraL~~---~p------~lllL----------DEPt~~L------------------------D~~  167 (257)
T PRK11247        131 PAALSGGQKQRVALARALIH---RP------GLLLL----------DEPLGAL------------------------DAL  167 (257)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCCC------------------------CHH
Confidence            46899999999999999986   56      78888          7755555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|++-.... +|+.+-+
T Consensus       168 --~~~~l-------~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l  207 (257)
T PRK11247        168 --TRIEM-------QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI  207 (257)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              34444       4566676543 4565666999876544 5666544

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.17  E-value=0.21  Score=49.72  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=52.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-..-+                        |.
T Consensus       144 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  180 (251)
T PRK14270        144 SALKLSGGQQQRLCIARTIAV---KP------DVILM----------DEPTSAL------------------------DP  180 (251)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999999985   66      78888          7755555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++... .|-.+|+|++-.... .|+.+-+
T Consensus       181 ~--~~~~l-------~~~L~~~~~~-~tiiivsH~~~~~~~~~d~v~~l  219 (251)
T PRK14270        181 I--STLKI-------EDLMVELKKE-YTIVIVTHNMQQASRVSDYTAFF  219 (251)
T ss_pred             H--HHHHH-------HHHHHHHHhC-CeEEEEEcCHHHHHHhcCEEEEE
Confidence            3  44445       5677777653 565666999876444 6776655

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=91.17  E-value=0.19  Score=49.87  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..++-   +|      ++..+          ||-.+.+                        |-. 
T Consensus       128 ~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~gL------------------------D~~-  163 (235)
T cd03299         128 ETLSGGEQQRVAIARALVV---NP------KILLL----------DEPFSAL------------------------DVR-  163 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------CCCcccC------------------------CHH-
Confidence            5799999999999988876   66      67788          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                       +...+       .+.|.+++.. ..|-.+++|++-... -.|+.+-+
T Consensus       164 -~~~~l-------~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l  203 (235)
T cd03299         164 -TKEKL-------REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM  203 (235)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence             55556       6677777664 445555699987644 46766544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=91.16  E-value=0.18  Score=50.03  Aligned_cols=76  Identities=8%  Similarity=0.001  Sum_probs=53.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||...-+                        |-
T Consensus       150 ~~~~LS~G~~qrv~la~al~~---~p------~llll----------DEPt~~L------------------------D~  186 (255)
T PRK11300        150 QAGNLAYGQQRRLEIARCMVT---QP------EILML----------DEPAAGL------------------------NP  186 (255)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCccCC------------------------CH
Confidence            446899999999999998887   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+++|+.-.... +|+.+-+
T Consensus       187 ~--~~~~l-------~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  227 (255)
T PRK11300        187 K--ETKEL-------DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV  227 (255)
T ss_pred             H--HHHHH-------HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  45555       6778888765 3354555898876655 5665544

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=91.16  E-value=0.2  Score=48.77  Aligned_cols=74  Identities=18%  Similarity=0.101  Sum_probs=50.7

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-. 
T Consensus       127 ~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D~~-  162 (213)
T TIGR01277       127 EQLSGGQRQRVALARCLVR---PN------PILLL----------DEPFSAL------------------------DPL-  162 (213)
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CHH-
Confidence            4899999999999999885   55      78888          7766655                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                       +...+       ...|.++... .-|=.+|+|+.-... -.|+.+-+
T Consensus       163 -~~~~~-------~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l  202 (213)
T TIGR01277       163 -LREEM-------LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV  202 (213)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence             34444       5677787764 334455588876544 46766554

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=91.15  E-value=0.18  Score=49.40  Aligned_cols=74  Identities=12%  Similarity=0.012  Sum_probs=51.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..++.   +|      ++..+          ||-.+.+                        |.
T Consensus       128 ~~~~LS~G~~qrv~la~al~~---~p------~illl----------DEPt~~L------------------------D~  164 (230)
T TIGR03410       128 RGGDLSGGQQQQLAIARALVT---RP------KLLLL----------DEPTEGI------------------------QP  164 (230)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccC------------------------CH
Confidence            345799999999999998886   55      78888          7765555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  +...+       ..+|.++... .-|=.+++|+.-.... .|+.+
T Consensus       165 ~--~~~~l-------~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~  203 (230)
T TIGR03410       165 S--IIKDI-------GRVIRRLRAEGGMAILLVEQYLDFARELADRYY  203 (230)
T ss_pred             H--HHHHH-------HHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE
Confidence            3  44444       5677787764 4565666999876665 45544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.14  E-value=0.18  Score=49.40  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       135 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~~  171 (214)
T PRK13543        135 VRQLSAGQKKRLALARLWLS---PA------PLWLL----------DEPYANL------------------------DLE  171 (214)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            46799999999999999987   66      78888          7655545                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~  657 (926)
                        +...+       ...|.++.....|=++++|+.-....+ ++.+
T Consensus       172 --~~~~l-------~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~  208 (214)
T PRK13543        172 --GITLV-------NRMISAHLRGGGAALVTTHGAYAAPPVRTRML  208 (214)
T ss_pred             --HHHHH-------HHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence              44455       567777766655645558887655433 4443

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=91.14  E-value=0.26  Score=56.34  Aligned_cols=71  Identities=15%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||=.|.=   +|      ||..+          ||--+-+                        |.. 
T Consensus       614 ~~LSGGQrQRiaLARall~---~p------~iliL----------DEptS~L------------------------D~~-  649 (710)
T TIGR03796       614 ANLSGGQRQRLEIARALVR---NP------SILIL----------DEATSAL------------------------DPE-  649 (710)
T ss_pred             CCCCHHHHHHHHHHHHHhh---CC------CEEEE----------ECccccC------------------------CHH-
Confidence            5799999999999976642   44      89999          7755444                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-.++       .+.|.   ....|..+|+|++-+...+|+.+-+
T Consensus       650 -te~~i-------~~~l~---~~~~T~IiitHrl~~i~~~D~Iivl  684 (710)
T TIGR03796       650 -TEKII-------DDNLR---RRGCTCIIVAHRLSTIRDCDEIIVL  684 (710)
T ss_pred             -HHHHH-------HHHHH---hcCCEEEEEecCHHHHHhCCEEEEE
Confidence             22333       12222   2467999999999999999998766

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=91.11  E-value=0.18  Score=50.98  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=53.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      .+..+          ||-..-+                        |-
T Consensus       140 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~  176 (265)
T PRK10253        140 SVDTLSGGQRQRAWIAMVLAQ---ET------AIMLL----------DEPTTWL------------------------DI  176 (265)
T ss_pred             CcccCChHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CH
Confidence            457999999999999999886   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v  659 (926)
                      .  +...+       ...|.++... .-|=.+++|++-. +.-+|+.+-+
T Consensus       177 ~--~~~~l-------~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l  217 (265)
T PRK10253        177 S--HQIDL-------LELLSELNREKGYTLAAVLHDLNQACRYASHLIAL  217 (265)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  55555       6677787664 3344444999864 4557777555

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=91.09  E-value=0.21  Score=54.97  Aligned_cols=76  Identities=14%  Similarity=0.064  Sum_probs=53.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      .|..+          ||--+-+                        |
T Consensus       401 ~~~~~LSgG~kqrv~lA~al~~---~p------~lllL----------DEPt~~L------------------------D  437 (506)
T PRK13549        401 LAIARLSGGNQQKAVLAKCLLL---NP------KILIL----------DEPTRGI------------------------D  437 (506)
T ss_pred             cccccCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCCCc------------------------C
Confidence            4557999999999999999986   67      78888          6644444                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      -.  +...+       .++|.++.....|=.+|+|..-...+ +|+.+-
T Consensus       438 ~~--~~~~l-------~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~  477 (506)
T PRK13549        438 VG--AKYEI-------YKLINQLVQQGVAIIVISSELPEVLGLSDRVLV  477 (506)
T ss_pred             Hh--HHHHH-------HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence            33  44455       66788887765564555999876655 577543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=91.09  E-value=0.19  Score=50.36  Aligned_cols=77  Identities=13%  Similarity=-0.029  Sum_probs=53.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +....||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       147 ~~~~~LS~Gq~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D  183 (258)
T PRK11701        147 DLPTTFSGGMQQRLQIARNLVT---HP------RLVFM----------DEPTGGL------------------------D  183 (258)
T ss_pred             CCCccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------C
Confidence            3446899999999999998875   56      78888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++... .-|=.+|+|+.-...+ +|+.+-+
T Consensus       184 ~~--~~~~l-------~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l  225 (258)
T PRK11701        184 VS--VQARL-------LDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM  225 (258)
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            44  44555       5566776654 3444455999888775 6765443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=91.08  E-value=0.23  Score=54.64  Aligned_cols=77  Identities=12%  Similarity=0.063  Sum_probs=54.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      ++..+          ||-.+=+                        |
T Consensus       136 ~~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D  172 (501)
T PRK11288        136 TPLKYLSIGQRQMVEIAKALAR---NA------RVIAF----------DEPTSSL------------------------S  172 (501)
T ss_pred             CchhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------cCCCCCC------------------------C
Confidence            3456899999999999999987   66      78888          7755545                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++.....|=.+|+|++....+ +|+.+-+
T Consensus       173 ~~--~~~~l-------~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l  213 (501)
T PRK11288        173 AR--EIEQL-------FRVIRELRAEGRVILYVSHRMEEIFALCDAITVF  213 (501)
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  45555       56777876655565555999876554 5765543

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=91.08  E-value=0.17  Score=48.83  Aligned_cols=74  Identities=15%  Similarity=0.052  Sum_probs=50.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..
T Consensus       128 ~~~LS~G~~qr~~laral~~---~p------~llll----------DEPt~~L------------------------D~~  164 (213)
T cd03301         128 PKQLSGGQRQRVALGRAIVR---EP------KVFLM----------DEPLSNL------------------------DAK  164 (213)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            35899999999999998875   66      78888          7755555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       .+.|.++... ..|=.+++|++-.... .|+.+-
T Consensus       165 --~~~~l-------~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~  203 (213)
T cd03301         165 --LRVQM-------RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV  203 (213)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence              44444       5677777764 4454555998865544 465443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.04  E-value=0.25  Score=49.28  Aligned_cols=75  Identities=12%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||-.|+.   +|      ++..+          ||-..-+                        |-
T Consensus       145 ~~~~LS~G~~qrl~laral~~---~p------~llll----------DEP~~gL------------------------D~  181 (252)
T PRK14256        145 NAMELSGGQQQRLCIARTIAV---KP------EVILM----------DEPASAL------------------------DP  181 (252)
T ss_pred             CcCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            456899999999999998875   66      78888          6655555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      .  +...+       ...|.++... -|=.+|+|++-... -+|+.+-+
T Consensus       182 ~--~~~~l-------~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l  220 (252)
T PRK14256        182 I--STLKI-------EELIEELKEK-YTIIIVTHNMQQAARVSDYTAFF  220 (252)
T ss_pred             H--HHHHH-------HHHHHHHHhC-CcEEEEECCHHHHHhhCCEEEEE
Confidence            3  44444       6678888653 46566699987654 46776654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.97  E-value=0.2  Score=50.37  Aligned_cols=75  Identities=13%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       151 ~~~~LSgG~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  187 (258)
T PRK14268        151 PALSLSGGQQQRLCIARTLAV---KP------KIILF----------DEPTSAL------------------------DP  187 (258)
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccc------------------------CH
Confidence            456899999999999998887   66      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. .-|=.+|+|++-...+ +|+.+-+
T Consensus       188 ~--~~~~l-------~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l  226 (258)
T PRK14268        188 I--STARI-------EDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFF  226 (258)
T ss_pred             H--HHHHH-------HHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence            3  44444       566777754 3454555999876555 5766544

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.92  E-value=0.17  Score=52.22  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||.+++||-.++.   +|      +|..+          ||..+-|                        |
T Consensus       141 ~~~~~LSgGq~qrv~lAraL~~---~P------~llll----------DEPt~~L------------------------D  177 (290)
T PRK13634        141 RSPFELSGGQMRRVAIAGVLAM---EP------EVLVL----------DEPTAGL------------------------D  177 (290)
T ss_pred             CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------C
Confidence            3456899999999999999986   77      78888          7766666                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       -+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus       178 ~~--~~~~l-------~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l  219 (290)
T PRK13634        178 PK--GRKEM-------MEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM  219 (290)
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  44445       5667777664 4565666999877655 5665544

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.89  E-value=0.23  Score=51.18  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=53.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       142 ~~~~LSgGq~qrl~laral~~---~p------~lLlL----------DEPt~gL------------------------D~  178 (287)
T PRK13641        142 SPFELSGGQMRRVAIAGVMAY---EP------EILCL----------DEPAAGL------------------------DP  178 (287)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCCCC------------------------CH
Confidence            466899999999999999988   67      78888          7755555                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus       179 ~--~~~~l-------~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l  218 (287)
T PRK13641        179 E--GRKEM-------MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL  218 (287)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  45555       66778876543444445898776544 5766555

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.89  E-value=0.17  Score=51.92  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=53.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.. 
T Consensus       142 ~~LS~G~~qrv~laral~~---~P------~llll----------DEPt~gL------------------------D~~-  177 (282)
T PRK13640        142 ANLSGGQKQRVAIAGILAV---EP------KIIIL----------DESTSML------------------------DPA-  177 (282)
T ss_pred             ccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CHH-
Confidence            6999999999999999887   67      77888          7765555                        544 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +...+       .+.|.++... .-|=.+++|+.-....+|+.+-+
T Consensus       178 -~~~~l-------~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l  216 (282)
T PRK13640        178 -GKEQI-------LKLIRKLKKKNNLTVISITHDIDEANMADQVLVL  216 (282)
T ss_pred             -HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence             45555       6677777764 33444559998777667776544

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=90.83  E-value=0.23  Score=48.36  Aligned_cols=73  Identities=12%  Similarity=-0.048  Sum_probs=48.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      .+..+          ||-.+-+                        |.
T Consensus       137 ~~~~LS~G~~qrv~laral~~---~p------~illl----------DEPt~~L------------------------D~  173 (218)
T cd03290         137 RGINLSGGQRQRICVARALYQ---NT------NIVFL----------DDPFSAL------------------------DI  173 (218)
T ss_pred             CCCcCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccc------------------------CH
Confidence            356899999999999999887   66      67777          7766655                        43


Q ss_pred             CCCchhhhhhcccCCCC--ChhhhccCCCceeEeecChhhHHhhhhh
Q psy834          612 ANPNLSRRAQANNSAQN--PLPEVSSSPNTRSRVQSSPTTRSRVQSS  656 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~--~l~e~~~~~~tr~~v~~~~~t~sr~~~~  656 (926)
                      .  +...+       .+  ++..+....-|=++++|.+......|+.
T Consensus       174 ~--~~~~l-------~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i  211 (218)
T cd03290         174 H--LSDHL-------MQEGILKFLQDDKRTLVLVTHKLQYLPHADWI  211 (218)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCCEEEEEeCChHHHhhCCEE
Confidence            3  33333       22  3444444444556669998776655554

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=90.82  E-value=0.19  Score=55.60  Aligned_cols=77  Identities=8%  Similarity=-0.021  Sum_probs=55.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       136 ~~~~~LSgG~~qrv~la~aL~~---~p------~lllL----------DEPt~~L------------------------D  172 (510)
T PRK15439        136 SSAGSLEVADRQIVEILRGLMR---DS------RILIL----------DEPTASL------------------------T  172 (510)
T ss_pred             CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCCCCC------------------------C
Confidence            3567899999999999999986   67      78888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.+++...-|=.+|+|+.-.... +|+.+-+
T Consensus       173 ~~--~~~~l-------~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l  213 (510)
T PRK15439        173 PA--ETERL-------FSRIRELLAQGVGIVFISHKLPEIRQLADRISVM  213 (510)
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  55666       67788887654454455998876554 5776544

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=90.78  E-value=0.2  Score=57.29  Aligned_cols=73  Identities=15%  Similarity=0.091  Sum_probs=52.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      -..||||||+++|||=.|.=   +|      ||..+          ||--+-+                        |..
T Consensus       609 G~~LSgGQrQRialARall~---~p------~iliL----------DE~Ts~L------------------------D~~  645 (708)
T TIGR01193       609 GSSISGGQKQRIALARALLT---DS------KVLIL----------DESTSNL------------------------DTI  645 (708)
T ss_pred             CCCCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCccccC------------------------CHH
Confidence            35799999999999876653   55      89999          7766655                        443


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-.++       .+.|.++  ...|..+|+|++-+...+|+.+-+
T Consensus       646 --te~~i-------~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l  681 (708)
T TIGR01193       646 --TEKKI-------VNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVL  681 (708)
T ss_pred             --HHHHH-------HHHHHHh--cCCEEEEEecchHHHHcCCEEEEE
Confidence              33444       3334444  246888889999999999998766

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=90.75  E-value=0.19  Score=55.01  Aligned_cols=76  Identities=11%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||++++||..|+.   +|      .|..+          ||-.+=+                        |.
T Consensus       138 ~~~~LSgG~~qrv~iA~al~~---~p------~lllL----------DEPt~~L------------------------D~  174 (500)
T TIGR02633       138 PVGDYGGGQQQLVEIAKALNK---QA------RLLIL----------DEPSSSL------------------------TE  174 (500)
T ss_pred             chhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCCCCC------------------------CH
Confidence            456899999999999999987   67      68888          7744444                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.+++...-|=.+|+|+.-.... +|+.+-+
T Consensus       175 ~--~~~~l-------~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l  214 (500)
T TIGR02633       175 K--ETEIL-------LDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI  214 (500)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence            4  45555       56778887655565666999776554 5776654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=90.75  E-value=0.21  Score=60.57  Aligned_cols=81  Identities=15%  Similarity=0.053  Sum_probs=60.9

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||+.++||..|+....+|      +|+.+          ||-..-|                        
T Consensus       823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p------~llIL----------DEPtsgL------------------------  862 (924)
T TIGR00630       823 GQPATTLSGGEAQRIKLAKELSKRSTGR------TLYIL----------DEPTTGL------------------------  862 (924)
T ss_pred             cCccccCCHHHHHHHHHHHHHhhcCCCC------CEEEE----------ECCCCCC------------------------
Confidence            3568899999999999999988543445      78899          8866666                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |-.  ++.++       .+.|.++.....|=++|+|++-.+...|+.+-+
T Consensus       863 D~~--~~~~L-------~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~L  903 (924)
T TIGR00630       863 HFD--DIKKL-------LEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDL  903 (924)
T ss_pred             CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence            544  66677       667788876677777779999888777765433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.74  E-value=0.25  Score=50.53  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=54.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       157 ~~~~~LSgGq~qrv~LAraL~~---~p------~lllL----------DEPt~~L------------------------D  193 (274)
T PRK14265        157 EKGTALSGGQQQRLCIARAIAM---KP------DVLLM----------DEPCSAL------------------------D  193 (274)
T ss_pred             CCcccCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCcccC------------------------C
Confidence            3456899999999999999875   66      78888          7766666                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .++|.++.. .-|=.+++|++-...+ +|+.+=+
T Consensus       194 ~~--~~~~l-------~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  233 (274)
T PRK14265        194 PI--STRQV-------EELCLELKE-QYTIIMVTHNMQQASRVADWTAFF  233 (274)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence            44  56666       677888865 3455555999866554 5766544

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=90.74  E-value=0.19  Score=51.09  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=52.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.
T Consensus       117 ~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  153 (251)
T PRK09544        117 PMQKLSGGETQRVLLARALLN---RP------QLLVL----------DEPTQGV------------------------DV  153 (251)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            357899999999999998876   66      78888          7766555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHH-hhhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRS-RVQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~s-r~~~~~~  658 (926)
                      .  +...+       .+.|.++... .-|=.+|+|+.-... -+|+.+-
T Consensus       154 ~--~~~~l-------~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~  193 (251)
T PRK09544        154 N--GQVAL-------YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLC  193 (251)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            3  34444       6677777664 445555589987754 4676653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=90.65  E-value=0.23  Score=47.18  Aligned_cols=70  Identities=19%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      ||||||.+++||..++.   +|      ++..+          ||--+-+                        |..  +
T Consensus        97 LS~G~~qrv~la~al~~---~p------~~lll----------DEPt~~L------------------------D~~--~  131 (173)
T cd03246          97 LSGGQRQRLGLARALYG---NP------RILVL----------DEPNSHL------------------------DVE--G  131 (173)
T ss_pred             cCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccc------------------------CHH--H
Confidence            99999999999998886   56      78888          7765555                        444  3


Q ss_pred             hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834          616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~  657 (926)
                      ...+       .+.|.++....-|=.+|+|+.-...-+|+.+
T Consensus       132 ~~~l-------~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~  166 (173)
T cd03246         132 ERAL-------NQAIAALKAAGATRIVIAHRPETLASADRIL  166 (173)
T ss_pred             HHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence            4444       4566677654445455599887665555543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=90.64  E-value=0.29  Score=54.18  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=54.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..++.   +|      +|..+          ||--+=+                        |
T Consensus       399 ~~~~~LSgG~kqrl~la~al~~---~p------~lLlL----------DEPt~gL------------------------D  435 (510)
T PRK15439        399 QAARTLSGGNQQKVLIAKCLEA---SP------QLLIV----------DEPTRGV------------------------D  435 (510)
T ss_pred             CccccCCcHHHHHHHHHHHHhh---CC------CEEEE----------CCCCcCc------------------------C
Confidence            4567999999999999999886   66      78888          6644444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .+.|.++.....|=.+|+|++-...+ +|+.+-+
T Consensus       436 ~~--~~~~l-------~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l  476 (510)
T PRK15439        436 VS--ARNDI-------YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM  476 (510)
T ss_pred             hh--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            44  55555       66777777665554555999877765 4665544

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=90.59  E-value=0.19  Score=51.15  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=54.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      .|..+          ||-.+-+                        |-
T Consensus       148 ~~~~LS~Ge~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D~  184 (268)
T PRK10419        148 RPPQLSGGQLQRVCLARALAV---EP------KLLIL----------DEAVSNL------------------------DL  184 (268)
T ss_pred             CCccCChHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccc------------------------CH
Confidence            345899999999999999987   66      67777          6655545                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|++-.... +|+.+-+
T Consensus       185 ~--~~~~~-------~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l  225 (268)
T PRK10419        185 V--LQAGV-------IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM  225 (268)
T ss_pred             H--HHHHH-------HHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence            3  45555       5678888764 4455666999887766 5776554

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.56  E-value=0.28  Score=48.87  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=52.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.++|||-.|+.   +|      +|..+          ||-.+-+                        |-
T Consensus       139 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEP~~~L------------------------D~  175 (246)
T PRK14269        139 NALALSGGQQQRLCIARALAI---KP------KLLLL----------DEPTSAL------------------------DP  175 (246)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            345899999999999998887   66      88888          7766666                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. .-|=.+|+|+.-...+ +|+.+-+
T Consensus       176 ~--~~~~l-------~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l  214 (246)
T PRK14269        176 I--SSGVI-------EELLKELSH-NLSMIMVTHNMQQGKRVADYTAFF  214 (246)
T ss_pred             H--HHHHH-------HHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEE
Confidence            3  44555       456667654 4455556999875544 5665544

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.55  E-value=0.25  Score=49.27  Aligned_cols=75  Identities=15%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       146 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  182 (251)
T PRK14244        146 SAFELSGGQQQRLCIARAIAV---KP------TMLLM----------DEPCSAL------------------------DP  182 (251)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999998885   66      78888          7755545                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. ..|=.+|+|++-.... +|+.+-+
T Consensus       183 ~--~~~~l-------~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l  221 (251)
T PRK14244        183 V--ATNVI-------ENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFF  221 (251)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEE
Confidence            3  34444       566777754 3455566999887554 6766544

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=90.54  E-value=0.25  Score=48.73  Aligned_cols=74  Identities=11%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-
T Consensus       110 ~~~~LS~G~~qrv~laral~~---~p------~llil----------DEP~~~L------------------------D~  146 (223)
T TIGR03771       110 PVGELSGGQRQRVLVARALAT---RP------SVLLL----------DEPFTGL------------------------DM  146 (223)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            345799999999999998887   55      88888          7766655                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  +...+       .+.|.++.....|=.+++|+.-...+ +|+.+
T Consensus       147 ~--~~~~l-------~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~  184 (223)
T TIGR03771       147 P--TQELL-------TELFIELAGAGTAILMTTHDLAQAMATCDRVV  184 (223)
T ss_pred             H--HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence            4  55566       56677777655555566999876655 56654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.53  E-value=0.25  Score=49.16  Aligned_cols=74  Identities=16%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-
T Consensus       144 ~~~~LS~Gq~qr~~laral~~---~p------~llll----------DEP~~~L------------------------D~  180 (251)
T PRK14251        144 NAQAFSGGQQQRICIARALAV---RP------KVVLL----------DEPTSAL------------------------DP  180 (251)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCccC------------------------CH
Confidence            456999999999999988875   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +...+       ...|.++.. ..|=.+|+|++-.... +|+.+-
T Consensus       181 ~--~~~~l-------~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~  218 (251)
T PRK14251        181 I--SSSEI-------EETLMELKH-QYTFIMVTHNLQQAGRISDQTAF  218 (251)
T ss_pred             H--HHHHH-------HHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEE
Confidence            4  44455       556666654 3465666999977555 576543

>PRK13409 putative ATPase RIL; Provisional

Probab=90.46  E-value=0.2  Score=57.43  Aligned_cols=77  Identities=16%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||+++|||..++.   +|      +|..+          ||-.+-|                        |
T Consensus       449 ~~~~~LSGGe~QRvaiAraL~~---~p------~llLL----------DEPt~~L------------------------D  485 (590)
T PRK13409        449 KNVKDLSGGELQRVAIAACLSR---DA------DLYLL----------DEPSAHL------------------------D  485 (590)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------C
Confidence            4567999999999999999885   45      89999          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +....       .++|.+++.. .-|=++|+|......+ .|+.+-+
T Consensus       486 ~~--~~~~l-------~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl  527 (590)
T PRK13409        486 VE--QRLAV-------AKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF  527 (590)
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            33  33444       5678888664 4566777999876655 5665544

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=90.46  E-value=0.19  Score=53.44  Aligned_cols=74  Identities=12%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||++++||..|+.   +|      .|..+          ||-..-|                        |-.
T Consensus       159 p~~LSgG~~QRv~iArAL~~---~P------~llil----------DEPts~L------------------------D~~  195 (331)
T PRK15079        159 PHEFSGGQCQRIGIARALIL---EP------KLIIC----------DEPVSAL------------------------DVS  195 (331)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            45899999999999999987   77      77787          6755555                        332


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +-..+       -++|.++... .-|=.+|||+.-...+ .|+.+-
T Consensus       196 --~~~~i-------~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v  234 (331)
T PRK15079        196 --IQAQV-------VNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV  234 (331)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence              22222       4567777654 3455555999887776 566543

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=90.44  E-value=0.29  Score=49.66  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |-
T Consensus       148 ~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  184 (264)
T PRK14243        148 SGLSLSGGQQQRLCIARAIAV---QP------EVILM----------DEPCSAL------------------------DP  184 (264)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999999986   77      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.+++.. .|=.+++|++-...+ +|+.+-+
T Consensus       185 ~--~~~~l-------~~~L~~~~~~-~tvi~vtH~~~~~~~~~d~v~~l  223 (264)
T PRK14243        185 I--STLRI-------EELMHELKEQ-YTIIIVTHNMQQAARVSDMTAFF  223 (264)
T ss_pred             H--HHHHH-------HHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEE
Confidence            4  44555       6677777653 454555999876544 4665443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=90.41  E-value=0.27  Score=54.15  Aligned_cols=76  Identities=14%  Similarity=0.007  Sum_probs=53.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..++.   +|      +|..+          ||--+=+                        |
T Consensus       391 ~~~~~LSgGekqrv~lA~al~~---~p------~lllL----------DEPt~~L------------------------D  427 (501)
T PRK10762        391 QAIGLLSGGNQQKVAIARGLMT---RP------KVLIL----------DEPTRGV------------------------D  427 (501)
T ss_pred             CchhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCCCC------------------------C
Confidence            3456899999999999999986   66      78998          7755444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      ..  +...+       .+.|.++.....|=.+|+|+.-...+ .|+.+-
T Consensus       428 ~~--~~~~l-------~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~  467 (501)
T PRK10762        428 VG--AKKEI-------YQLINQFKAEGLSIILVSSEMPEVLGMSDRILV  467 (501)
T ss_pred             Hh--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE
Confidence            44  55566       66788887654454444999776655 355443

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=90.37  E-value=0.25  Score=56.46  Aligned_cols=74  Identities=15%  Similarity=0.077  Sum_probs=54.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||+++|||=.+.   .+|      ||..+          ||--+-+                        |..
T Consensus       591 g~~LSgGq~qri~lARall---~~~------~ilil----------DEpts~L------------------------D~~  627 (694)
T TIGR01846       591 GANLSGGQRQRIAIARALV---GNP------RILIF----------DEATSAL------------------------DYE  627 (694)
T ss_pred             CCCCCHHHHHHHHHHHHHH---hCC------CEEEE----------ECCCcCC------------------------CHH
Confidence            3579999999999998774   255      89999          7765555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-..+       .+.|.++. ...|-.+|+|++-+...+|+.+-+
T Consensus       628 --~~~~i-------~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l  664 (694)
T TIGR01846       628 --SEALI-------MRNMREIC-RGRTVIIIAHRLSTVRACDRIIVL  664 (694)
T ss_pred             --HHHHH-------HHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEE
Confidence              44445       45566664 346777889999999999997766

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.36  E-value=0.26  Score=50.56  Aligned_cols=75  Identities=13%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||..+-+                        |.
T Consensus       160 ~~~~LSgGq~qrl~LAral~~---~p------~lllL----------DEPt~~L------------------------D~  196 (276)
T PRK14271        160 SPFRLSGGQQQLLCLARTLAV---NP------EVLLL----------DEPTSAL------------------------DP  196 (276)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            456899999999999999875   66      78888          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      .  +...+       ...|.++... .|=.+|+|+.-... -+|+.+-+
T Consensus       197 ~--~~~~l-------~~~L~~~~~~-~tiiivsH~~~~~~~~~dri~~l  235 (276)
T PRK14271        197 T--TTEKI-------EEFIRSLADR-LTVIIVTHNLAQAARISDRAALF  235 (276)
T ss_pred             H--HHHHH-------HHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  45555       5667777653 45566699987644 46766554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=90.32  E-value=0.29  Score=53.89  Aligned_cols=78  Identities=15%  Similarity=0.033  Sum_probs=55.6

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||.+++||..|+.   +|      .|..+          ||=-.-+                        
T Consensus       391 ~~~~~~LSgGq~qrl~la~al~~---~p------~lllL----------DEPt~~L------------------------  427 (501)
T PRK11288        391 EQLIMNLSGGNQQKAILGRWLSE---DM------KVILL----------DEPTRGI------------------------  427 (501)
T ss_pred             cCccccCCHHHHHHHHHHHHHcc---CC------CEEEE----------cCCCCCC------------------------
Confidence            34567999999999999998874   56      78888          6643333                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      |-.  +...+       .++|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus       428 D~~--~~~~l-------~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l  469 (501)
T PRK11288        428 DVG--AKHEI-------YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM  469 (501)
T ss_pred             CHh--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence            444  55555       67788888776675566999877655 4666544

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=90.29  E-value=0.22  Score=49.95  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..++.   +|      +|..+          ||..+-+                        |.
T Consensus       137 ~~~~LS~Gq~qrv~laral~~---~p------~lLlL----------DEPt~~L------------------------D~  173 (254)
T PRK10418        137 YPFEMSGGMLQRMMIALALLC---EA------PFIIA----------DEPTTDL------------------------DV  173 (254)
T ss_pred             CCcccCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccc------------------------CH
Confidence            456899999999999999885   66      78888          7766666                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++... .-|=.+++|++-.... +|+.+-+
T Consensus       174 ~--~~~~l-------~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l  214 (254)
T PRK10418        174 V--AQARI-------LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM  214 (254)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence            3  44444       5667777654 3344455898877654 5765443

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=90.24  E-value=0.3  Score=49.21  Aligned_cols=75  Identities=16%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       153 ~~~~LS~Gq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  189 (260)
T PRK10744        153 SGYSLSGGQQQRLCIARGIAI---RP------EVLLL----------DEPCSAL------------------------DP  189 (260)
T ss_pred             CCCCCCHHHHHHHHHHHHHHC---CC------CEEEE----------cCCCccC------------------------CH
Confidence            456899999999999999986   66      88898          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++.. .-|=.+++|++-.... +|+.+-+
T Consensus       190 ~--~~~~l-------~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l  228 (260)
T PRK10744        190 I--STGRI-------EELITELKQ-DYTVVIVTHNMQQAARCSDYTAFM  228 (260)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence            4  44555       556777754 2354444999876654 5665444

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=90.20  E-value=0.28  Score=49.35  Aligned_cols=76  Identities=12%  Similarity=0.084  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||..++.   +|      ++..+          ||-..-+                        |.
T Consensus       149 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~~L------------------------D~  185 (262)
T PRK09984        149 RVSTLSGGQQQRVAIARALMQ---QA------KVILA----------DEPIASL------------------------DP  185 (262)
T ss_pred             CccccCHHHHHHHHHHHHHhc---CC------CEEEe----------cCccccC------------------------CH
Confidence            446899999999999999886   66      67777          6655555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+++|++-- +.-.|+.+-+
T Consensus       186 ~--~~~~l-------~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l  226 (262)
T PRK09984        186 E--SARIV-------MDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL  226 (262)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  44555       5567777654 3344444899864 5556665544

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.15  E-value=0.34  Score=48.13  Aligned_cols=71  Identities=14%  Similarity=0.145  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||..+-+                        |-
T Consensus       143 ~~~~LS~Gq~qrv~laral~~---~p------~llll----------DEP~~gL------------------------D~  179 (250)
T PRK14266        143 SALGLSGGQQQRLCIARTIAV---SP------EVILM----------DEPCSAL------------------------DP  179 (250)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCCccC------------------------CH
Confidence            356899999999999999886   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS  655 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~  655 (926)
                      .  +...+       ...|.++.. .-|=.+|+|+.-....+..
T Consensus       180 ~--~~~~l-------~~~l~~~~~-~~tiii~sh~~~~~~~~~~  213 (250)
T PRK14266        180 I--STTKI-------EDLIHKLKE-DYTIVIVTHNMQQATRVSK  213 (250)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEECCHHHHHhhcC
Confidence            4  44555       666777754 3455556999887766554

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=90.15  E-value=0.27  Score=49.35  Aligned_cols=79  Identities=16%  Similarity=0.072  Sum_probs=52.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHh----ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIW----KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN  607 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQ----KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~  607 (926)
                      .+..||||||.+++||..|+..    ..+|      ++..+          ||-.+-+                      
T Consensus       123 ~~~~LS~G~~qrv~la~al~~~~~~~~p~p------~llll----------DEPt~~L----------------------  164 (248)
T PRK03695        123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAG------QLLLL----------DEPMNSL----------------------  164 (248)
T ss_pred             CcccCCHHHHHHHHHHHHHhccccccCCCC------CEEEE----------cCCcccC----------------------
Confidence            3468999999999999988852    2244      67888          7766655                      


Q ss_pred             CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChh-hHHhhhhhcce
Q psy834          608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT-TRSRVQSSLTI  659 (926)
Q Consensus       608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~-t~sr~~~~~~v  659 (926)
                        |-.  +...+       .++|.++....-|=.+++|+.- ...-.|+.+-+
T Consensus       165 --D~~--~~~~l-------~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  206 (248)
T PRK03695        165 --DVA--QQAAL-------DRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL  206 (248)
T ss_pred             --CHH--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence              444  44455       5678888765455455588876 44556766544

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=90.14  E-value=0.19  Score=55.46  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=54.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |
T Consensus       423 ~~~~~LSgGq~qrv~laral~~---~p------~lLll----------DEPt~~L------------------------D  459 (520)
T TIGR03269       423 KYPDELSEGERHRVALAQVLIK---EP------RIVIL----------DEPTGTM------------------------D  459 (520)
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence            4567999999999999998875   66      78888          7755555                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++... .-|=.+|+|+.-...+ +|+.+-+
T Consensus       460 ~~--~~~~l-------~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l  501 (520)
T TIGR03269       460 PI--TKVDV-------THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM  501 (520)
T ss_pred             HH--HHHHH-------HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence            55  55556       6677777654 3454555999876665 5666544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.13  E-value=0.29  Score=50.55  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       177 ~~~~LSgGe~qrv~LAraL~~---~p------~lLLL----------DEPts~L------------------------D~  213 (285)
T PRK14254        177 SGLDLSGGQQQRLCIARAIAP---DP------EVILM----------DEPASAL------------------------DP  213 (285)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCCC------------------------CH
Confidence            456899999999999999875   66      78888          7766555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhh
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSS  656 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~  656 (926)
                      .  +...+       .+.|.++... .|=.+++|++-...+ +|+.
T Consensus       214 ~--~~~~l-------~~~L~~~~~~-~tiii~tH~~~~i~~~~dri  249 (285)
T PRK14254        214 V--ATSKI-------EDLIEELAEE-YTVVIVTHNMQQAARISDKT  249 (285)
T ss_pred             H--HHHHH-------HHHHHHHhcC-CEEEEEeCCHHHHHhhcCEE
Confidence            4  55555       5667777654 454555999877655 4553

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=90.03  E-value=0.26  Score=46.67  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      +||||||.+++||..++.   +|      ++..+          ||-.+-+                        |..  
T Consensus        82 qLS~G~~qrl~laral~~---~p------~illl----------DEP~~~L------------------------D~~--  116 (163)
T cd03216          82 QLSVGERQMVEIARALAR---NA------RLLIL----------DEPTAAL------------------------TPA--  116 (163)
T ss_pred             ecCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCcCC------------------------CHH--
Confidence            399999999999988876   66      78888          7766666                        544  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      +...+       .+.|.++.....|=.+++|+.-.... .|+.+-+
T Consensus       117 ~~~~l-------~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  155 (163)
T cd03216         117 EVERL-------FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL  155 (163)
T ss_pred             HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            55566       66777776554454555898876554 5665443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=89.95  E-value=0.22  Score=53.74  Aligned_cols=75  Identities=13%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||+++|||..++.   +|      +|..+          ||--+-|                        |..
T Consensus       131 ~~~LSgGq~QRvaLAraL~~---~P------~lLLL----------DEPts~L------------------------D~~  167 (369)
T PRK11000        131 PKALSGGQRQRVAIGRTLVA---EP------SVFLL----------DEPLSNL------------------------DAA  167 (369)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            45899999999999999986   67      78888          6644444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~v  659 (926)
                        +-..+       .+.|.++... .-|=.+|||+.-.. .-.|+.+-+
T Consensus       168 --~~~~l-------~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl  207 (369)
T PRK11000        168 --LRVQM-------RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL  207 (369)
T ss_pred             --HHHHH-------HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              33344       4567777664 34555569998654 445766544

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=89.93  E-value=0.33  Score=43.45  Aligned_cols=46  Identities=13%  Similarity=0.102  Sum_probs=29.9

Q ss_pred             EeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCC
Q psy834          523 CTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       523 VSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      ....++....+..||.|+|.++  +|+.+|+....     . .+...          ||.+.=|
T Consensus       224 ~~~~~~~~~~~~~~S~G~~~~l--~l~~~l~~~~~-----~~~illi----------DEpE~~L  270 (303)
T PF13304_consen  224 KIKGDGKEIPLSSLSSGEKRLL--SLLSLLLSAKK-----NGSILLI----------DEPENHL  270 (303)
T ss_dssp             EETTEEEEGGGS---HHHHHHH--HHHHHHHTTTT-----T-SEEEE----------ESSSTTS
T ss_pred             EEcCCCeEEeeccCCHHHHHHH--HHHHHHhCcCC-----CCeEEEe----------cCCcCCC
Confidence            3344556789999999999996  55555555554     3 67777          8888877

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=89.87  E-value=0.26  Score=54.32  Aligned_cols=77  Identities=10%  Similarity=0.051  Sum_probs=52.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||..|+.   +|      ++..+          ||-.+-+                        |
T Consensus       137 ~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------D  173 (501)
T PRK10762        137 KLVGELSIGEQQMVEIAKVLSF---ES------KVIIM----------DEPTDAL------------------------T  173 (501)
T ss_pred             CchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcCCC------------------------C
Confidence            3466899999999999999986   66      78888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .++|.++....-|=.+|+|+.--... +|+.+-+
T Consensus       174 ~~--~~~~l-------~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l  214 (501)
T PRK10762        174 DT--ETESL-------FRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF  214 (501)
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            43  34444       55677776554454445998765544 5776655

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=89.86  E-value=0.29  Score=56.60  Aligned_cols=71  Identities=17%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||+++|||=.+.    +.     +||..+          ||-.+-+                        |.. 
T Consensus       616 ~~LSGGQkQRlalARALl----~~-----p~ILIL----------DEpTSaL------------------------D~~-  651 (711)
T TIGR00958       616 SQLSGGQKQRIAIARALV----RK-----PRVLIL----------DEATSAL------------------------DAE-  651 (711)
T ss_pred             CcCCHHHHHHHHHHHHHh----cC-----CCEEEE----------Ecccccc------------------------CHH-
Confidence            579999999999987654    34     489999          7766666                        332 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        .+..-+.       ...  ....|-.+|+|++-+..++|+.+-+
T Consensus       652 --te~~i~~-------~~~--~~~~TvIiItHrl~~i~~aD~IivL  686 (711)
T TIGR00958       652 --CEQLLQE-------SRS--RASRTVLLIAHRLSTVERADQILVL  686 (711)
T ss_pred             --HHHHHHH-------hhc--cCCCeEEEEeccHHHHHhCCEEEEE
Confidence              2222121       111  2346888889999999999998766

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=89.81  E-value=0.22  Score=55.39  Aligned_cols=74  Identities=12%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||-.|.-   +|      |+..+          ||-.+-+                        |.. 
T Consensus       448 ~~LSgGq~qRl~lARal~~---~~------~ilil----------DE~ts~L------------------------D~~-  483 (547)
T PRK10522        448 LKLSKGQKKRLALLLALAE---ER------DILLL----------DEWAADQ------------------------DPH-  483 (547)
T ss_pred             CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------CHH-
Confidence            4799999999999987653   55      89999          8877766                        444 


Q ss_pred             CchhhhhhcccCCCCChh-hhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLP-EVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~-e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       .+.|. .+.....|-.+|+|++-++..+|+.+-+
T Consensus       484 -~~~~i-------~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l  522 (547)
T PRK10522        484 -FRREF-------YQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEM  522 (547)
T ss_pred             -HHHHH-------HHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEE
Confidence             33333       22222 2222356888889999999999988765

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.81  E-value=0.34  Score=48.18  Aligned_cols=75  Identities=15%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |.
T Consensus       142 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEP~~~L------------------------D~  178 (249)
T PRK14253        142 HAFGLSGGQQQRLCIARTIAM---EP------DVILM----------DEPTSAL------------------------DP  178 (249)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999998875   66      68888          6655444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       -+.|.+++.. .|=.+|+|++-.... +|+.+-+
T Consensus       179 ~--~~~~l-------~~~l~~~~~~-~tii~~sh~~~~~~~~~d~i~~l  217 (249)
T PRK14253        179 I--ATHKI-------EELMEELKKN-YTIVIVTHSMQQARRISDRTAFF  217 (249)
T ss_pred             H--HHHHH-------HHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEE
Confidence            3  44444       4567777653 454555999877555 6766544

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=89.81  E-value=0.28  Score=52.35  Aligned_cols=75  Identities=16%  Similarity=0.046  Sum_probs=49.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.++|||..++.   +|      ++..+          ||--+-+                        |..
T Consensus       126 ~~~LSgGq~qRvalaraL~~---~p------~llLL----------DEPts~L------------------------D~~  162 (352)
T PRK11144        126 PGSLSGGEKQRVAIGRALLT---AP------ELLLM----------DEPLASL------------------------DLP  162 (352)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            36899999999999999986   67      67777          6644444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCC-CceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++.... -|=.+|||++-...+ .|+.+-+
T Consensus       163 --~~~~l-------~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l  202 (352)
T PRK11144        163 --RKREL-------LPYLERLAREINIPILYVSHSLDEILRLADRVVVL  202 (352)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEE
Confidence              33444       55677776653 344555999865444 5665443

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.76  E-value=0.3  Score=49.30  Aligned_cols=75  Identities=13%  Similarity=0.045  Sum_probs=50.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..++.   +|      ++..+          ||-.+-+                        |.
T Consensus       147 ~~~~LSgGq~qrv~laral~~---~p------~vllL----------DEP~~~L------------------------D~  183 (261)
T PRK14258        147 SALDLSGGQQQRLCIARALAV---KP------KVLLM----------DEPCFGL------------------------DP  183 (261)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999999874   56      78888          6655444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhh-hhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRV-QSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~-~~~~~  658 (926)
                      .  +...+       ...|.+++.. ..|=.+|+|++.....+ |+.+-
T Consensus       184 ~--~~~~l-------~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~  223 (261)
T PRK14258        184 I--ASMKV-------ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF  223 (261)
T ss_pred             H--HHHHH-------HHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE
Confidence            3  33444       5667777543 44555669998766543 55443

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=89.72  E-value=0.27  Score=54.01  Aligned_cols=71  Identities=21%  Similarity=0.146  Sum_probs=49.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||=-|.-   +|      ++..+          ||--+-+                        |.. 
T Consensus       457 ~~LSgGq~qri~laRal~~---~~------~ilil----------DE~ts~l------------------------D~~-  492 (529)
T TIGR02857       457 AGLSGGQAQRLALARAFLR---DA------PLLLL----------DEPTAHL------------------------DAE-  492 (529)
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc------------------------CHH-
Confidence            4799999999999875543   44      88888          7765555                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~  657 (926)
                       +-.+.       .+.|.++. ...|...|+|++-+...+|+.+
T Consensus       493 -~~~~i-------~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~  527 (529)
T TIGR02857       493 -TEALV-------TEALRALA-QGRTVLLVTHRLALAERADRIV  527 (529)
T ss_pred             -HHHHH-------HHHHHHhc-CCCEEEEEecCHHHHHhCCEEE
Confidence             33444       34455543 3468888899999998888754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=89.65  E-value=0.26  Score=48.67  Aligned_cols=74  Identities=15%  Similarity=0.009  Sum_probs=54.1

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..|+-   +|      +|..+          ||..+-+                        |.. 
T Consensus       129 ~~lS~G~~qrl~laral~~---~p------~llll----------DEP~~gL------------------------D~~-  164 (232)
T cd03300         129 SQLSGGQQQRVAIARALVN---EP------KVLLL----------DEPLGAL------------------------DLK-  164 (232)
T ss_pred             hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CHH-
Confidence            5999999999999998887   66      78888          7766666                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v  659 (926)
                       +...+       .+.|.++... .-|=.+++|++-. +.-+|+.+-+
T Consensus       165 -~~~~l-------~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l  204 (232)
T cd03300         165 -LRKDM-------QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM  204 (232)
T ss_pred             -HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence             44455       5667777764 4566777999876 4557877554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=89.55  E-value=0.21  Score=52.93  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=46.8

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNP  606 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~  606 (926)
                      .|......+||||||+.||||=-+|+   +|      .+...          ||.-.-|                     
T Consensus       128 ~ka~~yP~qLSGGQqQRVAIARALaM---~P------~vmLF----------DEPTSAL---------------------  167 (240)
T COG1126         128 DKADAYPAQLSGGQQQRVAIARALAM---DP------KVMLF----------DEPTSAL---------------------  167 (240)
T ss_pred             hhhhhCccccCcHHHHHHHHHHHHcC---CC------CEEee----------cCCcccC---------------------
Confidence            44455668999999999999999998   66      22222          4433333                     


Q ss_pred             CCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecCh
Q psy834          607 NPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSP  647 (926)
Q Consensus       607 ~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~  647 (926)
                         |--  -|.-.       -+.+.+++...-|=-+|||-=
T Consensus       168 ---DPE--lv~EV-------L~vm~~LA~eGmTMivVTHEM  196 (240)
T COG1126         168 ---DPE--LVGEV-------LDVMKDLAEEGMTMIIVTHEM  196 (240)
T ss_pred             ---CHH--HHHHH-------HHHHHHHHHcCCeEEEEechh
Confidence               111  23333       566788899999988889963

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=89.51  E-value=0.29  Score=56.66  Aligned_cols=76  Identities=12%  Similarity=0.070  Sum_probs=52.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       140 ~~~~LSGGQrQRVaLArAL~~---~P------~LLLL----------DEPTsgL------------------------D~  176 (549)
T PRK13545        140 PVKTYSSGMKSRLGFAISVHI---NP------DILVI----------DEALSVG------------------------DQ  176 (549)
T ss_pred             CcccCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------CH
Confidence            357899999999999999987   66      78888          7755444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       ...|.++....-|=++|+|++-...+ +|+.+-+
T Consensus       177 ~--sr~~L-------lelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL  216 (549)
T PRK13545        177 T--FTKKC-------LDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL  216 (549)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence            3  33344       45677776555566667999766554 6776554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=89.45  E-value=0.24  Score=54.19  Aligned_cols=70  Identities=16%  Similarity=0.005  Sum_probs=50.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||.+++||..++.   +|      +|..+          ||--+-+                        |
T Consensus       397 ~~~~~LSgGq~qrv~la~al~~---~p------~lllL----------DEPt~gL------------------------D  433 (490)
T PRK10938        397 APFHSLSWGQQRLALIVRALVK---HP------TLLIL----------DEPLQGL------------------------D  433 (490)
T ss_pred             CchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCccccC------------------------C
Confidence            4567999999999999998875   66      78888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCc-eeEeecChhhHHh
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNT-RSRVQSSPTTRSR  652 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~t-r~~v~~~~~t~sr  652 (926)
                      ..  +...+       .+.|.+++....+ =.+|+|+.-....
T Consensus       434 ~~--~~~~l-------~~~L~~l~~~~~~tviivsHd~~~~~~  467 (490)
T PRK10938        434 PL--NRQLV-------RRFVDVLISEGETQLLFVSHHAEDAPA  467 (490)
T ss_pred             HH--HHHHH-------HHHHHHHHhcCCcEEEEEecchhhhhh
Confidence            44  55566       6778888765444 3445998766655

>PRK13409 putative ATPase RIL; Provisional

Probab=89.43  E-value=0.27  Score=56.31  Aligned_cols=74  Identities=15%  Similarity=0.018  Sum_probs=53.9

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||+++|||..++.   +|      .|+.+          ||-.+=|                        
T Consensus       207 ~~~~~~LSgGe~qrv~ia~al~~---~p------~lllL----------DEPts~L------------------------  243 (590)
T PRK13409        207 DRDISELSGGELQRVAIAAALLR---DA------DFYFF----------DEPTSYL------------------------  243 (590)
T ss_pred             cCChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------
Confidence            35677999999999999988874   56      79999          7766666                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhh
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSS  656 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~  656 (926)
                      |..  +..++       .+.|.++.. ..|-.+|+|.......+ |+.
T Consensus       244 D~~--~~~~l-------~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v  281 (590)
T PRK13409        244 DIR--QRLNV-------ARLIRELAE-GKYVLVVEHDLAVLDYLADNV  281 (590)
T ss_pred             CHH--HHHHH-------HHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE
Confidence            444  45555       567788776 56666669998776654 554

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=89.20  E-value=0.32  Score=47.50  Aligned_cols=75  Identities=11%  Similarity=0.014  Sum_probs=49.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |
T Consensus       114 ~~~~~LS~Ge~qrl~laral~~---~p------~llll----------DEPt~~L------------------------D  150 (202)
T cd03233         114 EFVRGISGGERKRVSIAEALVS---RA------SVLCW----------DNSTRGL------------------------D  150 (202)
T ss_pred             cchhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------cCCCccC------------------------C
Confidence            4567899999999999999887   66      78888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCce-eEeecChh-h-HHhhhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTR-SRVQSSPT-T-RSRVQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr-~~v~~~~~-t-~sr~~~~~  657 (926)
                      ..  +...+       .+.|.++.....+- .+++||.. . ..-.|+.+
T Consensus       151 ~~--~~~~~-------~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~  191 (202)
T cd03233         151 SS--TALEI-------LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL  191 (202)
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence            33  34444       66788887754444 44466642 3 33455443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=89.19  E-value=0.37  Score=47.45  Aligned_cols=70  Identities=17%  Similarity=0.046  Sum_probs=49.0

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      ||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |..  +
T Consensus        72 LSgGq~qrv~laral~~---~p------~lllL----------DEPts~L------------------------D~~--~  106 (177)
T cd03222          72 LSGGELQRVAIAAALLR---NA------TFYLF----------DEPSAYL------------------------DIE--Q  106 (177)
T ss_pred             CCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------CHH--H
Confidence            99999999999999987   66      77777          7755555                        444  4


Q ss_pred             hhhhhhcccCCCCChhhhccCC-CceeEeecChhhHHh-hhhhc
Q psy834          616 LSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      ...+       .+.|.++.... -|-.+|+|+.....+ +|+.+
T Consensus       107 ~~~l-------~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~  143 (177)
T cd03222         107 RLNA-------ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH  143 (177)
T ss_pred             HHHH-------HHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence            4445       45666665543 565666999876665 56554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=89.12  E-value=0.24  Score=53.28  Aligned_cols=75  Identities=12%  Similarity=0.049  Sum_probs=47.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||++||||--++.   +|      .|..+          ||--+-|                        |..
T Consensus       132 ~~~LSgGq~QRvalARAL~~---~P------~llLL----------DEP~s~L------------------------D~~  168 (356)
T PRK11650        132 PRELSGGQRQRVAMGRAIVR---EP------AVFLF----------DEPLSNL------------------------DAK  168 (356)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            45999999999999999885   67      67777          6644444                        322


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCC-ceeEeecChh-hHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPT-TRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~-t~sr~~~~~~v  659 (926)
                        +-..+       ...|.++....+ |=..|||+.. .+.-.|+.+-+
T Consensus       169 --~r~~l-------~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl  208 (356)
T PRK11650        169 --LRVQM-------RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM  208 (356)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              22333       445666666533 4444599986 45556765443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=89.12  E-value=0.35  Score=49.77  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=51.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..++.   +|      +|..+          ||...-+                        |.
T Consensus       140 ~~~~LS~Gq~qrv~Laral~~---~p------~iLlL----------DEPt~gL------------------------D~  176 (264)
T PRK13546        140 PVKKYSSGMRAKLGFSINITV---NP------DILVI----------DEALSVG------------------------DQ  176 (264)
T ss_pred             CcccCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCccccC------------------------CH
Confidence            456899999999999988775   55      88998          7755555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  ....+       .+.|.++....-|=.+++|+...... .|+.+-
T Consensus       177 ~--~~~~l-------~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~  215 (264)
T PRK13546        177 T--FAQKC-------LDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAW  215 (264)
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEE
Confidence            3  33344       55677776555565666998776554 566543

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=89.08  E-value=0.4  Score=48.90  Aligned_cols=75  Identities=13%  Similarity=0.104  Sum_probs=52.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..++.   +|      +|..+          ||--+-+                        |.
T Consensus       164 ~~~~LSgGe~qrv~laraL~~---~p------~lllL----------DEPt~~L------------------------D~  200 (271)
T PRK14238        164 NAYGLSGGQQQRLCIARCLAI---EP------DVILM----------DEPTSAL------------------------DP  200 (271)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCcC------------------------CH
Confidence            456899999999999999876   66      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.+++. .-|=.+|+|++-...+ +|+.+-+
T Consensus       201 ~--~~~~l-------~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l  239 (271)
T PRK14238        201 I--STLKV-------EELVQELKK-DYSIIIVTHNMQQAARISDKTAFF  239 (271)
T ss_pred             H--HHHHH-------HHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence            4  45555       667777765 3454555998876544 5665443

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=89.01  E-value=0.32  Score=52.44  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=50.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||++||||--++.   +|      +|..+          ||--+-+                        |..
T Consensus       134 ~~~LSgGq~QRVaLARaL~~---~P------~lLLL----------DEP~s~L------------------------D~~  170 (351)
T PRK11432        134 VDQISGGQQQRVALARALIL---KP------KVLLF----------DEPLSNL------------------------DAN  170 (351)
T ss_pred             hhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CHH
Confidence            46899999999999999887   77      67777          6644444                        322


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        .-..+       ...|.++... .-|=.+|||++....+ .|+..-+
T Consensus       171 --~r~~l-------~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm  210 (351)
T PRK11432        171 --LRRSM-------REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVM  210 (351)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence              22333       5566777654 3455666999987544 4665433

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.95  E-value=0.44  Score=48.22  Aligned_cols=76  Identities=11%  Similarity=0.068  Sum_probs=52.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       160 ~~~~~LSgGq~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D  196 (268)
T PRK14248        160 SSALSLSGGQQQRLCIARTLAM---KP------AVLLL----------DEPASAL------------------------D  196 (268)
T ss_pred             cCcccCCHHHHHHHHHHHHHhC---CC------CEEEE----------cCCCccc------------------------C
Confidence            3567999999999999999985   66      78888          7765555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~~~~~v  659 (926)
                      ..  ....+       .++|.++.. ..|=.+++|++-... -+|+.+-+
T Consensus       197 ~~--~~~~l-------~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l  236 (268)
T PRK14248        197 PI--SNAKI-------EELITELKE-EYSIIIVTHNMQQALRVSDRTAFF  236 (268)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEE
Confidence            33  34444       667777755 245445599987544 46766544

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=88.88  E-value=0.36  Score=51.14  Aligned_cols=74  Identities=15%  Similarity=0.081  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||++++||.-++.   +|      .|..+          ||-..-|                        |.
T Consensus       150 ~p~~LSgGq~QRv~iArAL~~---~P------~llil----------DEPts~L------------------------D~  186 (326)
T PRK11022        150 YPHQLSGGMSQRVMIAMAIAC---RP------KLLIA----------DEPTTAL------------------------DV  186 (326)
T ss_pred             CchhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------CH
Confidence            456999999999999999997   78      67777          7755555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  +...+       -++|.++..... |=.+|||+.-...+ .|+.+
T Consensus       187 ~--~~~~i-------l~lL~~l~~~~g~til~iTHdl~~~~~~adri~  225 (326)
T PRK11022        187 T--IQAQI-------IELLLELQQKENMALVLITHDLALVAEAAHKII  225 (326)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            3  33334       567888876433 44444999876655 56654

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.79  E-value=5.9  Score=47.01  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             ccCchhHHHHHHHHHHHHHhcccc
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVV  557 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP  557 (926)
                      .-||-|||+-.|+++.+|=.+-.|
T Consensus       528 n~LSEGekt~iaf~yflakL~enp  551 (758)
T COG4694         528 NTLSEGEKTFIAFLYFLAKLKENP  551 (758)
T ss_pred             ccccccchhHHHHHHHHHHHHhCc
Confidence            349999999999998888877777

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=88.79  E-value=9.3  Score=47.07  Aligned_cols=96  Identities=18%  Similarity=0.107  Sum_probs=62.5

Q ss_pred             EEEEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          520 NFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPN  599 (926)
Q Consensus       520 eISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~  599 (926)
                      .|.|.-..+..+....||-|=|=..=|||-||+.+.--+-.- =||.+-                      ..-|+    
T Consensus       886 ~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~-LP~i~D----------------------D~fVh----  938 (984)
T COG4717         886 SIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREP-LPFIAD----------------------DIFVH----  938 (984)
T ss_pred             eeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCC-CCeeec----------------------cchhc----
Confidence            466666666677888999999999999999999876530000 122221                      00111    


Q ss_pred             CCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceee
Q psy834          600 SRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQS  661 (926)
Q Consensus       600 ~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~  661 (926)
                               -|+.  -..|.       |++|.+|+. ++-=+-+|||+-|..++-++=+|+.
T Consensus       939 ---------FD~~--R~~r~-------~e~l~dls~-~~QviYFTCHe~~~d~~~s~~vI~l  981 (984)
T COG4717         939 ---------FDDE--RAKRM-------LELLADLSE-GNQVIYFTCHEHTCDAFPSSEVITL  981 (984)
T ss_pred             ---------cCHH--HHHHH-------HHHHHHhcc-CCeEEEEEechhhhcccccccceee
Confidence                     1333  33455       999999998 5555555999999877666666653

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=88.78  E-value=0.33  Score=52.27  Aligned_cols=76  Identities=14%  Similarity=0.050  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||++||||-.++.   +|      ++..+          ||--.-|                        |.
T Consensus       133 ~~~~LSgGq~QRvalArAL~~---~P------~llLL----------DEP~s~L------------------------D~  169 (353)
T PRK10851        133 YPAQLSGGQKQRVALARALAV---EP------QILLL----------DEPFGAL------------------------DA  169 (353)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            346999999999999998876   66      67777          6644444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCC-CceeEeecChhh-HHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSP-NTRSRVQSSPTT-RSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~-~tr~~v~~~~~t-~sr~~~~~~v  659 (926)
                      .  +-..+       .+.|.++.... -|=.+|||++.- +.-.|+.+-+
T Consensus       170 ~--~r~~l-------~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl  210 (353)
T PRK10851        170 Q--VRKEL-------RRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM  210 (353)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  33344       56777887763 455666999976 4446665443

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.75  E-value=0.45  Score=47.90  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..|+.   +|      +|..+          ||..+-+                        |-
T Consensus       147 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  183 (259)
T PRK14260        147 SALGLSGGQQQRLCIARALAI---KP------KVLLM----------DEPCSAL------------------------DP  183 (259)
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCccC------------------------CH
Confidence            456899999999999999874   66      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... -|=.+|+|++-.... +|+.+-+
T Consensus       184 ~--~~~~l-------~~~l~~~~~~-~tiii~tH~~~~i~~~~d~i~~l  222 (259)
T PRK14260        184 I--ATMKV-------EELIHSLRSE-LTIAIVTHNMQQATRVSDFTAFF  222 (259)
T ss_pred             H--HHHHH-------HHHHHHHhcC-CEEEEEeCCHHHHHHhcCeEEEE
Confidence            4  44455       5667777653 455556999877655 4664433

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=88.72  E-value=0.4  Score=48.82  Aligned_cols=75  Identities=16%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.++|||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       165 ~~~~LS~Gq~qrv~laral~~---~p------~lllL----------DEPt~gL------------------------D~  201 (272)
T PRK14236        165 NAFGLSGGQQQRLVIARAIAI---EP------EVLLL----------DEPTSAL------------------------DP  201 (272)
T ss_pred             CcccCCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999998875   56      78888          6655544                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.+++. ..|-++++|++-...+ .|+.+-+
T Consensus       202 ~--~~~~l-------~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l  240 (272)
T PRK14236        202 I--STLKI-------EELITELKS-KYTIVIVTHNMQQAARVSDYTAFM  240 (272)
T ss_pred             H--HHHHH-------HHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence            3  44445       566777765 3566666999876544 6766554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=88.69  E-value=0.33  Score=55.49  Aligned_cols=77  Identities=12%  Similarity=0.050  Sum_probs=54.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||++|+||..|+.   +|      .|..+          ||--+-|                        |
T Consensus       164 ~~~~~LSgGq~QRv~iA~AL~~---~P------~lLll----------DEPt~~L------------------------D  200 (623)
T PRK10261        164 RYPHQLSGGMRQRVMIAMALSC---RP------AVLIA----------DEPTTAL------------------------D  200 (623)
T ss_pred             CCCccCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCCCcc------------------------C
Confidence            4567999999999999999985   88      68888          7755555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       -++|.++... .-|=.+|+|..-...+ +|+.+-+
T Consensus       201 ~~--~~~~l-------~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl  242 (623)
T PRK10261        201 VT--IQAQI-------LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM  242 (623)
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence            44  44444       5678888765 4454555999766555 5776544

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=88.57  E-value=0.33  Score=52.89  Aligned_cols=75  Identities=16%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||++||||-.++.   +|      ++..+          ||-.+-+                        |..
T Consensus       142 p~~LSgGq~QRVaLARaL~~---~P------~llLL----------DEP~s~L------------------------D~~  178 (375)
T PRK09452        142 PHQLSGGQQQRVAIARAVVN---KP------KVLLL----------DESLSAL------------------------DYK  178 (375)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCcC------------------------CHH
Confidence            36899999999999999887   67      67777          5543333                        222


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~~v  659 (926)
                        .-..+       ...|.++... .-|=..|||++.- ++-.|+.+-+
T Consensus       179 --~r~~l-------~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl  218 (375)
T PRK09452        179 --LRKQM-------QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM  218 (375)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              22233       5566666664 3344555999885 5556665433

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=88.52  E-value=0.37  Score=60.62  Aligned_cols=75  Identities=12%  Similarity=0.136  Sum_probs=54.9

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||=-|.-   +|      ||..+          ||--+-|                        |.. 
T Consensus      1357 ~~LSGGQkQRIaIARALlr---~p------~ILLL----------DEaTSaL------------------------D~~- 1392 (1466)
T PTZ00265       1357 KSLSGGQKQRIAIARALLR---EP------KILLL----------DEATSSL------------------------DSN- 1392 (1466)
T ss_pred             CcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc------------------------CHH-
Confidence            5799999999999864433   56      89999          8877777                        433 


Q ss_pred             CchhhhhhcccCCCCChhhhc-cCCCceeEeecChhhHHhhhhhccee
Q psy834          614 PNLSRRAQANNSAQNPLPEVS-SSPNTRSRVQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~-~~~~tr~~v~~~~~t~sr~~~~~~v~  660 (926)
                       +-...       +.-|.++. ....|-.+|+|..-|+.++|+.+-+.
T Consensus      1393 -sE~~I-------~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~ 1432 (1466)
T PTZ00265       1393 -SEKLI-------EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432 (1466)
T ss_pred             -HHHHH-------HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEe
Confidence             22223       33455654 24578888899999999999998764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.46  E-value=0.37  Score=48.14  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||.+++||..++.   +|      +|..+          ||..+-+                        |.
T Consensus       146 ~~~~LS~G~~qrv~laral~~---~p------~lllL----------DEP~~gL------------------------D~  182 (253)
T PRK14261        146 SALSLSGGQQQRLCIARTLAV---NP------EVILM----------DEPCSAL------------------------DP  182 (253)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456899999999999998887   66      78888          7766655                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v  659 (926)
                      .  +...+       ...|.++... .|=.+++|++-.- .-+|+.+-+
T Consensus       183 ~--~~~~l-------~~~l~~~~~~-~tvii~sh~~~~~~~~~d~v~~l  221 (253)
T PRK14261        183 I--ATAKI-------EDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFM  221 (253)
T ss_pred             H--HHHHH-------HHHHHHHhhC-ceEEEEEcCHHHHHhhCCEEEEE
Confidence            4  44555       4567777653 3434448987654 346766544

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=88.43  E-value=0.43  Score=47.10  Aligned_cols=75  Identities=11%  Similarity=0.059  Sum_probs=50.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||.+++||..|+.   +|      ++..+          ||-.+-+                        |.
T Consensus       140 ~~~~LS~Ge~qrv~laral~~---~p------~~lll----------DEPt~~L------------------------D~  176 (242)
T TIGR03411       140 LAGLLSHGQKQWLEIGMLLMQ---DP------KLLLL----------DEPVAGM------------------------TD  176 (242)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCccCC------------------------CH
Confidence            446899999999999998876   55      78888          7766666                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. ..|=.+++|+.-.... +|+.+-+
T Consensus       177 ~--~~~~l-------~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l  215 (242)
T TIGR03411       177 E--ETEKT-------AELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVL  215 (242)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence            4  44444       566777765 2344444888876654 5655433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=88.32  E-value=0.39  Score=48.46  Aligned_cols=73  Identities=12%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |..
T Consensus       159 ~~~LS~G~~qrv~laral~~---~p------~llll----------DEPt~gL------------------------D~~  195 (265)
T PRK14252        159 AFNLSGGQQQRLCIARALAT---DP------EILLF----------DEPTSAL------------------------DPI  195 (265)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            56899999999999998887   66      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       +..|.+++.. .|=.+|+|+.-.... .|+.+-
T Consensus       196 --~~~~l-------~~~l~~l~~~-~tiiivth~~~~~~~~~d~i~~  232 (265)
T PRK14252        196 --ATASI-------EELISDLKNK-VTILIVTHNMQQAARVSDYTAY  232 (265)
T ss_pred             --HHHHH-------HHHHHHHHhC-CEEEEEecCHHHHHHhCCEEEE
Confidence              55556       6677777652 455666998866543 565543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=88.29  E-value=0.36  Score=55.17  Aligned_cols=75  Identities=12%  Similarity=0.045  Sum_probs=52.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||++++||..++.   +|      +|..+          ||--.-|                        |
T Consensus       459 ~~~~~LSgGqrQRv~iAraL~~---~p------~llll----------DEPts~L------------------------D  495 (623)
T PRK10261        459 RYPHEFSGGQRQRICIARALAL---NP------KVIIA----------DEAVSAL------------------------D  495 (623)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence            3456899999999999999985   67      78888          7755545                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      ..  +...+       .++|.++... ..|=.+|+|+.-...+ .|+.+
T Consensus       496 ~~--~~~~i-------~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~  535 (623)
T PRK10261        496 VS--IRGQI-------INLLLDLQRDFGIAYLFISHDMAVVERISHRVA  535 (623)
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            44  44444       6778888765 3454445999776554 56544

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=88.27  E-value=0.38  Score=52.16  Aligned_cols=28  Identities=25%  Similarity=0.146  Sum_probs=23.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      .+.+||||||++||||-.++.   +|      +|..+
T Consensus       134 ~~~~LSgGq~QRvaLARAL~~---~P------~llLL  161 (362)
T TIGR03258       134 LPAQLSGGMQQRIAIARAIAI---EP------DVLLL  161 (362)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            345999999999999999987   67      67777

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=88.25  E-value=0.47  Score=48.57  Aligned_cols=75  Identities=15%  Similarity=0.110  Sum_probs=52.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||..++||..|+.   +|      ++..+          ||..+-+                        |-.
T Consensus       135 ~~~LS~Gq~qrl~laraL~~---~p------~llil----------DEPt~gL------------------------D~~  171 (277)
T PRK13652        135 PHHLSGGEKKRVAIAGVIAM---EP------QVLVL----------DEPTAGL------------------------DPQ  171 (277)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            35899999999999999887   66      67888          7766665                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .++|.++... .-|=.+++|++-.... .|+.+-+
T Consensus       172 --~~~~l-------~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l  211 (277)
T PRK13652        172 --GVKEL-------IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM  211 (277)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence              44445       5667777764 4455555999876644 5665443

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=88.24  E-value=0.43  Score=45.23  Aligned_cols=71  Identities=17%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy834          536 LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPN  615 (926)
Q Consensus       536 LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N  615 (926)
                      ||||||.+++||..++.   +|      .+..+          ||-.+-+                        |.+  +
T Consensus        97 LS~G~~~rl~la~al~~---~p------~llll----------DEP~~gL------------------------D~~--~  131 (171)
T cd03228          97 LSGGQRQRIAIARALLR---DP------PILIL----------DEATSAL------------------------DPE--T  131 (171)
T ss_pred             hCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCcCC------------------------CHH--H
Confidence            99999999999998876   66      67788          7755555                        444  4


Q ss_pred             hhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          616 LSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       616 ~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      ...+       -+.|.++.. .-|=.+++|.+-.+...|+.+-+
T Consensus       132 ~~~l-------~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l  167 (171)
T cd03228         132 EALI-------LEALRALAK-GKTVIVIAHRLSTIRDADRIIVL  167 (171)
T ss_pred             HHHH-------HHHHHHhcC-CCEEEEEecCHHHHHhCCEEEEE
Confidence            4444       445666643 23434448988777666665443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=88.17  E-value=0.53  Score=45.48  Aligned_cols=28  Identities=21%  Similarity=0.106  Sum_probs=24.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      ....||||||.+++||..++.   +|      +|..+
T Consensus       124 ~~~~lS~G~~qrv~laral~~---~p------~llll  151 (204)
T cd03250         124 KGINLSGGQKQRISLARAVYS---DA------DIYLL  151 (204)
T ss_pred             CCCcCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            356899999999999999887   66      78888

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=87.98  E-value=0.39  Score=51.74  Aligned_cols=74  Identities=16%  Similarity=0.067  Sum_probs=48.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||++||||--++.   +|      ++..+          ||--+-+                        |.
T Consensus       131 ~~~~LSgGq~QRvaLARaL~~---~P------~llLL----------DEP~s~L------------------------D~  167 (353)
T TIGR03265       131 YPGQLSGGQQQRVALARALAT---SP------GLLLL----------DEPLSAL------------------------DA  167 (353)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            446899999999999999987   67      66777          5544444                        22


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhh-HHhhhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTT-RSRVQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t-~sr~~~~~  657 (926)
                      .  .-..+       ...|.++....+ |=..|||++-. +.-.|+.+
T Consensus       168 ~--~r~~l-------~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~  206 (353)
T TIGR03265       168 R--VREHL-------RTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV  206 (353)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence            2  22233       556667666533 44555999985 45567654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=87.98  E-value=0.43  Score=58.03  Aligned_cols=78  Identities=22%  Similarity=0.094  Sum_probs=59.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      +.+..||||||++++||-.++.   +|     . .++++          ||-.+=|                        
T Consensus       485 r~~~~LSgGE~QRv~LA~aL~~---~~-----~~~llIL----------DEPtagL------------------------  522 (943)
T PRK00349        485 RSAGTLSGGEAQRIRLATQIGS---GL-----TGVLYVL----------DEPSIGL------------------------  522 (943)
T ss_pred             CchhhCCHHHHHHHHHHHHHhh---CC-----CCcEEEe----------cCCccCC------------------------
Confidence            5778999999999999999986   33     2 37888          6644444                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |..  ...++       -..|.++....+|-.+|+|.+-.+...|+.+-+
T Consensus       523 d~~--~~~~L-------~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L  563 (943)
T PRK00349        523 HQR--DNDRL-------IETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI  563 (943)
T ss_pred             CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence            334  55666       667888877788988889999988878886654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=87.83  E-value=0.5  Score=49.34  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||.+++||..++.   +|      +|..+          ||-.+-|                        |..
T Consensus       198 ~~~LSgGq~qrv~LAraL~~---~p------~lLLL----------DEPtsgL------------------------D~~  234 (305)
T PRK14264        198 ALGLSGGQQQRLCIARCLAV---DP------EVILM----------DEPASAL------------------------DPI  234 (305)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CHH
Confidence            45899999999999999986   66      78888          7766666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhh
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSS  656 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~  656 (926)
                        +...+       .+.|.++... -|=.+|+|++-.... +|+.
T Consensus       235 --~~~~l-------~~~L~~~~~~-~tiiivtH~~~~i~~~~d~i  269 (305)
T PRK14264        235 --ATSKI-------EDLIEELAEE-YTVVVVTHNMQQAARISDQT  269 (305)
T ss_pred             --HHHHH-------HHHHHHHhcC-CEEEEEEcCHHHHHHhcCEE
Confidence              44455       5667777664 454555999877544 5653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=87.67  E-value=0.43  Score=53.45  Aligned_cols=74  Identities=19%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        
T Consensus       438 ~~~~~~LSgGe~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------  474 (552)
T TIGR03719       438 QKKVGQLSGGERNRVHLAKTLKS---GG------NVLLL----------DEPTNDL------------------------  474 (552)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhh---CC------CEEEE----------eCCCCCC------------------------
Confidence            45678999999999999998875   66      89999          8755555                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      |..  +...+       .+.|.++.   .|=.+|+|++-...+ +|+.+-
T Consensus       475 D~~--~~~~l-------~~~l~~~~---~~viivsHd~~~~~~~~d~i~~  512 (552)
T TIGR03719       475 DVE--TLRAL-------EEALLEFA---GCAVVISHDRWFLDRIATHILA  512 (552)
T ss_pred             CHH--HHHHH-------HHHHHHCC---CeEEEEeCCHHHHHHhCCEEEE
Confidence            544  55555       45565553   364455999887776 466543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=87.60  E-value=0.41  Score=52.10  Aligned_cols=74  Identities=15%  Similarity=0.056  Sum_probs=50.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||++++||..+|.   +|      +|..+          ||--+-+                        |-
T Consensus       126 ~p~~LSGGq~QRV~lARAL~~---~p------~iLLl----------DEP~saL------------------------D~  162 (363)
T TIGR01186       126 YPDELSGGMQQRVGLARALAA---EP------DILLM----------DEAFSAL------------------------DP  162 (363)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            344899999999999999885   66      78888          6654444                        22


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  .-..+       ++.|.++... .-|-++|||..-...+ .|+.+
T Consensus       163 ~--~r~~l-------~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~  201 (363)
T TIGR01186       163 L--IRDSM-------QDELKKLQATLQKTIVFITHDLDEAIRIGDRIV  201 (363)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            2  22333       5566666543 5677778999876555 56654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=87.60  E-value=0.52  Score=52.79  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       157 ~~~~~LSgGqkqrv~la~al~~---~p------~lLLL----------DEPt~~L------------------------D  193 (552)
T TIGR03719       157 ADVTKLSGGERRRVALCRLLLS---KP------DMLLL----------DEPTNHL------------------------D  193 (552)
T ss_pred             CchhhcCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------C
Confidence            3567999999999999999985   66      78888          7765555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhccee
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSLTIQ  660 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~~v~  660 (926)
                      ..  +...+       .+.|.+..   .|=.+|+|+.--...+ |+.+-+.
T Consensus       194 ~~--~~~~l-------~~~L~~~~---~tvIiisHd~~~~~~~~d~v~~l~  232 (552)
T TIGR03719       194 AE--SVAWL-------EQHLQEYP---GTVVAVTHDRYFLDNVAGWILELD  232 (552)
T ss_pred             hH--HHHHH-------HHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEE
Confidence            44  44444       33444442   3545559988766554 6665543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=87.45  E-value=0.51  Score=54.27  Aligned_cols=75  Identities=15%  Similarity=0.049  Sum_probs=51.3

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||++++||.+|+.   +|      +|..+          ||-..-|                        
T Consensus       425 ~~~~~~LSgGekqRl~La~~l~~---~p------~lLlL----------DEPt~~L------------------------  461 (638)
T PRK10636        425 TEETRRFSGGEKARLVLALIVWQ---RP------NLLLL----------DEPTNHL------------------------  461 (638)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence            45788999999999999999885   55      88898          7733333                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      |-.  ....+       .+.|.++   ..|=.+|+|..-...+ +|+.+-+
T Consensus       462 D~~--~~~~l-------~~~L~~~---~gtvi~vSHd~~~~~~~~d~i~~l  500 (638)
T PRK10636        462 DLD--MRQAL-------TEALIDF---EGALVVVSHDRHLLRSTTDDLYLV  500 (638)
T ss_pred             CHH--HHHHH-------HHHHHHc---CCeEEEEeCCHHHHHHhCCEEEEE
Confidence            333  44445       4455555   2476667999887766 4555433

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=87.43  E-value=0.52  Score=53.96  Aligned_cols=73  Identities=21%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||.+++||..|+.   +|      +|..+          ||-..-+                        
T Consensus       435 ~~~~~~LSgGekqRl~la~al~~---~p------~lLlL----------DEPt~~L------------------------  471 (635)
T PRK11147        435 MTPVKALSGGERNRLLLARLFLK---PS------NLLIL----------DEPTNDL------------------------  471 (635)
T ss_pred             hChhhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence            45678999999999999998876   55      78888          7655444                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL  657 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~  657 (926)
                      |-.  +...+       ++.|.++   ..|=.+|+|+.-.+.++ |+.+
T Consensus       472 D~~--~~~~l-------~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~  508 (635)
T PRK11147        472 DVE--TLELL-------EELLDSY---QGTVLLVSHDRQFVDNTVTECW  508 (635)
T ss_pred             CHH--HHHHH-------HHHHHhC---CCeEEEEECCHHHHHHhcCEEE
Confidence            444  45555       5556555   24656669998776653 4443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=87.42  E-value=0.43  Score=52.64  Aligned_cols=75  Identities=17%  Similarity=0.099  Sum_probs=51.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||++++||..|+.   +|      +|..+          ||--+-+                        |..
T Consensus       162 ~~~LSgGq~QRv~LArAL~~---~P------~iLLL----------DEPts~L------------------------D~~  198 (400)
T PRK10070        162 PDELSGGMRQRVGLARALAI---NP------DILLM----------DEAFSAL------------------------DPL  198 (400)
T ss_pred             cccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCccC------------------------CHH
Confidence            35899999999999999887   67      78888          7755555                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        +...+       .+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus       199 --~r~~l-------~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL  238 (400)
T PRK10070        199 --IRTEM-------QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM  238 (400)
T ss_pred             --HHHHH-------HHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence              44445       6677777653 3455666999876544 5665543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=87.38  E-value=0.55  Score=47.36  Aligned_cols=74  Identities=18%  Similarity=0.090  Sum_probs=51.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||..++||..|+-   +|      ++..+          ||-.+-+                        |..
T Consensus       154 ~~~LS~G~~qrl~laral~~---~p------~llll----------DEPt~gL------------------------D~~  190 (257)
T cd03288         154 GENFSVGQRQLFCLARAFVR---KS------SILIM----------DEATASI------------------------DMA  190 (257)
T ss_pred             CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH
Confidence            45899999999999998875   56      77888          6655444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +...+       ...|.++.. .-|=.+++|++-....+|+.+-+
T Consensus       191 --~~~~l-------~~~l~~~~~-~~tiii~sh~~~~~~~~dri~~l  227 (257)
T cd03288         191 --TENIL-------QKVVMTAFA-DRTVVTIAHRVSTILDADLVLVL  227 (257)
T ss_pred             --HHHHH-------HHHHHHhcC-CCEEEEEecChHHHHhCCEEEEE
Confidence              34445       455666543 34555569999988878877554

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=87.28  E-value=0.49  Score=59.59  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||+++|||--|.-   +|      +|..+          ||--+-+                        |..
T Consensus       577 g~~LSGGQkQRiaIARAll~---~P------~ILlL----------DEpTSaL------------------------D~~  613 (1466)
T PTZ00265        577 ASKLSGGQKQRISIARAIIR---NP------KILIL----------DEATSSL------------------------DNK  613 (1466)
T ss_pred             CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc------------------------CHH
Confidence            34799999999999987764   66      89999          8866666                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHhhhhhcceeeecCC
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSRVQSSLTIQSAEQG  665 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr~~~~~~v~~aE~G  665 (926)
                        +-..+       +..|.++.. ...|-.+|+|..-+....|+.+-+.-.+.|
T Consensus       614 --se~~i-------~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g  658 (1466)
T PTZ00265        614 --SEYLV-------QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERG  658 (1466)
T ss_pred             --HHHHH-------HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccc
Confidence              44445       666777764 356777779999998888887766543333

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=87.24  E-value=0.49  Score=50.36  Aligned_cols=74  Identities=16%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+|||||++.++||..++.   +|      .|..+          ||--.-|                        |-.
T Consensus       159 p~~LSgG~~QRv~IArAL~~---~P------~llil----------DEPts~L------------------------D~~  195 (330)
T PRK09473        159 PHEFSGGMRQRVMIAMALLC---RP------KLLIA----------DEPTTAL------------------------DVT  195 (330)
T ss_pred             cccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CHH
Confidence            45899999999999999987   77      77788          7754444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhcc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~~  658 (926)
                        +...+       -++|.++....+ |=.+|+|..-...+ .|+.+-
T Consensus       196 --~~~~i-------~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~v  234 (330)
T PRK09473        196 --VQAQI-------MTLLNELKREFNTAIIMITHDLGVVAGICDKVLV  234 (330)
T ss_pred             --HHHHH-------HHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence              33333       556777776533 44444999877665 466543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=87.17  E-value=0.57  Score=52.03  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||.+++||..|+.   +|      +|..+          ||-.+-+                        
T Consensus       433 ~~~~~~LSgGq~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------  469 (530)
T PRK15064        433 KKSVKVLSGGEKGRMLFGKLMMQ---KP------NVLVM----------DEPTNHM------------------------  469 (530)
T ss_pred             cCcccccCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence            45689999999999999999885   55      89999          7755555                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      |-.  +...+       .+.|.++   ..|=.+|+|++-.... +|+.+-+
T Consensus       470 D~~--~~~~l-------~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l  508 (530)
T PRK15064        470 DME--SIESL-------NMALEKY---EGTLIFVSHDREFVSSLATRIIEI  508 (530)
T ss_pred             CHH--HHHHH-------HHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEE
Confidence            444  45555       3445555   2365666999887665 4665543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=87.03  E-value=0.76  Score=43.01  Aligned_cols=68  Identities=22%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      +|||||+.+++||..|+.   +|      ++..+          ||-.+-+                        |..  
T Consensus        70 ~lS~G~~~rv~laral~~---~p------~illl----------DEP~~~L------------------------D~~--  104 (144)
T cd03221          70 QLSGGEKMRLALAKLLLE---NP------NLLLL----------DEPTNHL------------------------DLE--  104 (144)
T ss_pred             cCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCccCC------------------------CHH--
Confidence            499999999999888866   66      78888          7766666                        444  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL  657 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~  657 (926)
                      +...+       .+.|.++.   .|=++++|.+-..... |+.+
T Consensus       105 ~~~~l-------~~~l~~~~---~til~~th~~~~~~~~~d~v~  138 (144)
T cd03221         105 SIEAL-------EEALKEYP---GTVILVSHDRYFLDQVATKII  138 (144)
T ss_pred             HHHHH-------HHHHHHcC---CEEEEEECCHHHHHHhCCEEE
Confidence            44555       34455542   3545558887766553 6554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=86.95  E-value=0.5  Score=50.98  Aligned_cols=75  Identities=16%  Similarity=0.074  Sum_probs=50.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||++|+||--||.   +|      ++..+          ||-.+-+                        |-
T Consensus       137 ~~~~LSgGqkQRV~IARAL~~---~P------~iLLl----------DEPts~L------------------------D~  173 (343)
T TIGR02314       137 YPSNLSGGQKQRVAIARALAS---NP------KVLLC----------DEATSAL------------------------DP  173 (343)
T ss_pred             ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------CH
Confidence            346999999999999999996   67      67777          6644444                        32


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +...+       .++|.++... .-|=.+|||..-...+ +|+.+-
T Consensus       174 ~--t~~~i-------~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v  213 (343)
T TIGR02314       174 A--TTQSI-------LELLKEINRRLGLTILLITHEMDVVKRICDCVAV  213 (343)
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            2  33333       5677888765 3455555998766555 576543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PLN03130 ABC transporter C family member; Provisional

Probab=86.87  E-value=0.64  Score=59.14  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      -..||||||+++|||=  |+++ +      ++|+.+          ||.-+-+                        | +
T Consensus       738 G~~LSGGQKQRIaLAR--Aly~-~------~~IlLL----------DEptSAL------------------------D-~  773 (1622)
T PLN03130        738 GVNISGGQKQRVSMAR--AVYS-N------SDVYIF----------DDPLSAL------------------------D-A  773 (1622)
T ss_pred             CCCCCHHHHHHHHHHH--HHhC-C------CCEEEE----------CCCcccc------------------------C-H
Confidence            3479999999999985  3332 3      489999          7766666                        3 2


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        .+++..-     .+.+..+. ...|+-+|||+.-+...+|+.+-+
T Consensus       774 --~~~~~I~-----~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L  812 (1622)
T PLN03130        774 --HVGRQVF-----DKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILV  812 (1622)
T ss_pred             --HHHHHHH-----HHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEE
Confidence              3444210     12222222 357999999999999999998765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=86.35  E-value=0.75  Score=46.79  Aligned_cols=76  Identities=12%  Similarity=0.056  Sum_probs=53.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +....||||||..++||-.|+.   +|      ++..+          ||..+-+                        |
T Consensus       159 ~~~~~LS~G~~qrl~laral~~---~p------~lllL----------DEPt~~L------------------------D  195 (267)
T PRK14237        159 KSALTLSGGQQQRLCIARAIAV---KP------DILLM----------DEPASAL------------------------D  195 (267)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------C
Confidence            3456899999999999988876   66      78888          7766666                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v  659 (926)
                      ..  +...+       ...|.++.. ..|=.+|+|++-.. .=+|+.+-+
T Consensus       196 ~~--~~~~l-------~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l  235 (267)
T PRK14237        196 PI--STMQL-------EETMFELKK-NYTIIIVTHNMQQAARASDYTAFF  235 (267)
T ss_pred             HH--HHHHH-------HHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEE
Confidence            44  56666       667777754 34445559998654 446776554

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=86.23  E-value=0.56  Score=57.12  Aligned_cols=80  Identities=15%  Similarity=0.078  Sum_probs=57.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||..++.   +|   .=.+|+.+          ||-..-|                        |
T Consensus       826 ~~~~tLSgGEkQRl~LAraL~~---~p---~~~~llIL----------DEPtsGL------------------------D  865 (943)
T PRK00349        826 QPATTLSGGEAQRVKLAKELSK---RS---TGKTLYIL----------DEPTTGL------------------------H  865 (943)
T ss_pred             CCcccCCHHHHHHHHHHHHHhc---CC---CCCeEEEE----------ECCCCCC------------------------C
Confidence            5678999999999999999874   33   00268998          7766555                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      ..  +...+       .+.|.++....+|=++|+|++-.+...|..+-+
T Consensus       866 ~~--~~~~L-------~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~L  905 (943)
T PRK00349        866 FE--DIRKL-------LEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDL  905 (943)
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence            44  55666       566777776677877779999888777765433

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=85.77  E-value=0.6  Score=49.57  Aligned_cols=78  Identities=21%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          529 SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNP  608 (926)
Q Consensus       529 r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~  608 (926)
                      .-+.|..|||||+++|-||--||-   +|      -|.++          ||   |+-|-                    
T Consensus       133 ~~r~i~~LSGGQ~QRV~lARAL~~---~p------~lllL----------DE---P~~gv--------------------  170 (254)
T COG1121         133 RDRQIGELSGGQKQRVLLARALAQ---NP------DLLLL----------DE---PFTGV--------------------  170 (254)
T ss_pred             hCCcccccCcHHHHHHHHHHHhcc---CC------CEEEe----------cC---CcccC--------------------
Confidence            346799999999999999998875   66      67787          55   55322                    


Q ss_pred             CCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcc
Q psy834          609 NSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       609 ~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                       |-+  +...+       -++|.++....-|=..|+|..-.... .|+.+-
T Consensus       171 -D~~--~~~~i-------~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~  211 (254)
T COG1121         171 -DVA--GQKEI-------YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVIC  211 (254)
T ss_pred             -CHH--HHHHH-------HHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEE
Confidence             333  44555       78899999986666666888755443 666543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=85.48  E-value=0.76  Score=51.66  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=48.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||..|+.   +|      ++..+          ||-.+=|                        |
T Consensus       159 ~~~~~LSgGqkqrv~la~al~~---~p------~vlLL----------DEPt~~L------------------------D  195 (556)
T PRK11819        159 AKVTKLSGGERRRVALCRLLLE---KP------DMLLL----------DEPTNHL------------------------D  195 (556)
T ss_pred             CchhhcCHHHHHHHHHHHHHhC---CC------CEEEE----------cCCCCcC------------------------C
Confidence            4567899999999999999985   66      78888          7744444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.+..   .|=.+|+|+.-.... .|+.+-+
T Consensus       196 ~~--~~~~l-------~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l  233 (556)
T PRK11819        196 AE--SVAWL-------EQFLHDYP---GTVVAVTHDRYFLDNVAGWILEL  233 (556)
T ss_pred             hH--HHHHH-------HHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEE
Confidence            33  34444       34455543   354555999876665 4555444

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.30  E-value=0.92  Score=46.20  Aligned_cols=75  Identities=15%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..|||||+.+++||..|+.   +|      ++..+          ||-.+-+                        |-
T Consensus       146 ~~~~LS~G~~qrv~laral~~---~p------~llll----------DEPtsgL------------------------D~  182 (261)
T PRK14263        146 SGLSLSGGQQQRLCIARAIAT---EP------EVLLL----------DEPCSAL------------------------DP  182 (261)
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            456899999999999988874   66      78888          7765555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .++|.++.. .-|=++++|++-.... +|+.+-+
T Consensus       183 ~--~~~~l-------~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l  221 (261)
T PRK14263        183 I--ATRRV-------EELMVELKK-DYTIALVTHNMQQAIRVADTTAFF  221 (261)
T ss_pred             H--HHHHH-------HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence            3  45555       667777754 3454555999876544 5665433

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=85.30  E-value=0.69  Score=48.98  Aligned_cols=73  Identities=12%  Similarity=0.036  Sum_probs=49.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||+.++||..++.   +|      .|..+          ||--.-|                        |-.
T Consensus       156 p~~LSgG~~QRv~iArAL~~---~P------~llil----------DEPts~L------------------------D~~  192 (330)
T PRK15093        156 PYELTEGECQKVMIAIALAN---QP------RLLIA----------DEPTNAM------------------------EPT  192 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCCCcC------------------------CHH
Confidence            46999999999999999987   77      77888          7755555                        322


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                        +-..+       .++|.++... .-|=.+|+|+.-...+ .|+.+
T Consensus       193 --~~~~i-------~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~  230 (330)
T PRK15093        193 --TQAQI-------FRLLTRLNQNNNTTILLISHDLQMLSQWADKIN  230 (330)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence              22223       5678887764 3454555998765544 55543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=85.24  E-value=0.86  Score=57.50  Aligned_cols=82  Identities=18%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||++.|||=.+.    +.     ++|..+          ||-.+-+                        |.. 
T Consensus      1420 ~~LSgGQrQrl~LARALL----r~-----~~ILiL----------DEaTSal------------------------D~~- 1455 (1522)
T TIGR00957      1420 ENLSVGQRQLVCLARALL----RK-----TKILVL----------DEATAAV------------------------DLE- 1455 (1522)
T ss_pred             CcCCHHHHHHHHHHHHHH----cC-----CCEEEE----------ECCcccC------------------------CHH-
Confidence            579999999999998554    33     589999          7766555                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCCC
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSPN  668 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~~  668 (926)
                       +-...       +..|.+... ..|-..|+|..-|....|+.+-+   ..+|.|.|.
T Consensus      1456 -Te~~I-------q~~l~~~~~-~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957      1456 -TDNLI-------QSTIRTQFE-DCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred             -HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence             21222       444554432 36888889999999999998866   345666553

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=84.92  E-value=0.71  Score=49.55  Aligned_cols=77  Identities=14%  Similarity=0.010  Sum_probs=52.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..|+.   +|      ++..+          ||-.+-|                        |
T Consensus       168 ~~~~~LS~G~kqrv~lA~aL~~---~P------~lLiL----------DEPt~gL------------------------D  204 (340)
T PRK13536        168 ARVSDLSGGMKRRLTLARALIN---DP------QLLIL----------DEPTTGL------------------------D  204 (340)
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------C
Confidence            3456899999999999999887   77      77888          6644444                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .+.|.++.....|=++++|+.--..+ +|+.+-+
T Consensus       205 ~~--~r~~l-------~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il  245 (340)
T PRK13536        205 PH--ARHLI-------WERLRSLLARGKTILLTTHFMEEAERLCDRLCVL  245 (340)
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            23  34445       66788887655565566888776655 5665544

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=84.89  E-value=0.78  Score=40.94  Aligned_cols=28  Identities=32%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      .+..||||||.+++||..|+-   +|      +|..+
T Consensus       105 ~~~~LS~Ge~~rl~la~al~~---~~------~llll  132 (137)
T PF00005_consen  105 RASSLSGGEKQRLALARALLK---NP------KLLLL  132 (137)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHT---TS------SEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHc---CC------CEEEE
Confidence            338999999999999998763   44      77777

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=84.72  E-value=0.66  Score=45.42  Aligned_cols=72  Identities=14%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||..++.   +|      ++..+          ||-.+-+                        |-. 
T Consensus       140 ~~lS~G~~qrv~laral~~---~p------~illl----------DEP~~~L------------------------D~~-  175 (220)
T TIGR02982       140 HNLSGGQKQRVAIARALVH---RP------KLVLA----------DEPTAAL------------------------DSK-  175 (220)
T ss_pred             hhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCCcC------------------------CHH-
Confidence            4799999999999998877   66      77777          6654444                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~  657 (926)
                       ....+       .+.|.++..+ .-|=.+|+|..-.+.-.|+.+
T Consensus       176 -~~~~l-------~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~  212 (220)
T TIGR02982       176 -SGRDV-------VELMQKLAREQGCTILIVTHDNRILDVADRIV  212 (220)
T ss_pred             -HHHHH-------HHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEE
Confidence             22333       4567777653 455566699987665555543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=84.65  E-value=0.77  Score=48.19  Aligned_cols=76  Identities=14%  Similarity=0.009  Sum_probs=50.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..|+.   +|      .+..+          ||-.+-+                        |-
T Consensus       135 ~~~~LS~G~~qrl~la~aL~~---~P------~lllL----------DEPt~gL------------------------D~  171 (306)
T PRK13537        135 KVGELSGGMKRRLTLARALVN---DP------DVLVL----------DEPTTGL------------------------DP  171 (306)
T ss_pred             chhhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            446899999999999998876   77      67777          5533333                        22


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=++++|..--..+ +|+.+=+
T Consensus       172 ~--~~~~l-------~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il  211 (306)
T PRK13537        172 Q--ARHLM-------WERLRSLLARGKTILLTTHFMEEAERLCDRLCVI  211 (306)
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            2  33444       66788887654555555888876666 5665433

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=84.65  E-value=0.7  Score=58.24  Aligned_cols=78  Identities=14%  Similarity=0.054  Sum_probs=49.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||+++|||=.+.-   +      ++|+.+          ||.-+-+                        |.
T Consensus       757 ~g~~LSGGQkqRiaLARAl~~---~------~~illL----------DEp~saL------------------------D~  793 (1522)
T TIGR00957       757 KGVNLSGGQKQRVSLARAVYS---N------ADIYLF----------DDPLSAV------------------------DA  793 (1522)
T ss_pred             CCCCCCHHHHHHHHHHHHHhc---C------CCEEEE----------cCCcccc------------------------CH
Confidence            356899999999999976553   3      489999          7766666                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .   +.+....+   |.-+..+. ...|..+|||++-....+|+.+-+
T Consensus       794 ~---~~~~i~~~---l~~~~~~~-~~~tvIlvTH~~~~l~~~D~ii~l  834 (1522)
T TIGR00957       794 H---VGKHIFEH---VIGPEGVL-KNKTRILVTHGISYLPQVDVIIVM  834 (1522)
T ss_pred             H---HHHHHHHH---Hhhhhhhh-cCCEEEEEeCChhhhhhCCEEEEe
Confidence            2   32221100   10001111 236888999999999999987655

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PF13175 AAA_15: AAA ATPase domain

Probab=84.52  E-value=5.8  Score=41.20  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPN  605 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~  605 (926)
                      ++...++.++|.|++.++.|+|+|++....-.-.... -|...          ||-.+=|                    
T Consensus       333 ~~~~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illi----------dEPE~~L--------------------  382 (415)
T PF13175_consen  333 DDESIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLI----------DEPELHL--------------------  382 (415)
T ss_pred             CCCcCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEE----------eCccccC--------------------
Confidence            3447899999999999999999987764433111100 06666          6644444                    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChh
Q psy834          606 PNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPT  648 (926)
Q Consensus       606 ~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~  648 (926)
                             +|.+-|-      ..+-|.+.+...+..+++ ||+|.
T Consensus       383 -------Hp~~q~~------~~~~L~~~~~~~~~QiiitTHSp~  413 (415)
T PF13175_consen  383 -------HPQAQRK------FIDFLKKLSKNNNIQIIITTHSPF  413 (415)
T ss_pred             -------CHHHHHH------HHHHHHHHhccCCCEEEEECCChh
Confidence                   2333332      245577778877888888 99985

>PLN03211 ABC transporter G-25; Provisional

Probab=84.49  E-value=0.7  Score=53.77  Aligned_cols=75  Identities=21%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||.+++||..++.   +|      +|..+          ||-..-|                        |-.
T Consensus       204 ~~~LSgGerqRv~ia~aL~~---~P------~iLlL----------DEPtsgL------------------------D~~  240 (659)
T PLN03211        204 IRGISGGERKRVSIAHEMLI---NP------SLLIL----------DEPTSGL------------------------DAT  240 (659)
T ss_pred             CCCcChhhhhHHHHHHHHHh---CC------CEEEE----------eCCCCCc------------------------CHH
Confidence            46899999999999999887   67      78888          6655555                        444


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhh--HHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT--RSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t--~sr~~~~~~v  659 (926)
                        +....       ...|.+++....|=..++|.|-.  ..-.|+.+-+
T Consensus       241 --~~~~l-------~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL  280 (659)
T PLN03211        241 --AAYRL-------VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL  280 (659)
T ss_pred             --HHHHH-------HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence              44445       56788888766676777999864  4456766543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=84.48  E-value=0.9  Score=46.98  Aligned_cols=76  Identities=16%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      ..+..||||||.+++||..++.   +|      +|..+          ||-.+-+                        |
T Consensus       178 ~~~~~LSgGq~qrv~LAraL~~---~p------~lllL----------DEPt~gL------------------------D  214 (286)
T PRK14275        178 KNALGLSGGQQQRLCVARTLAV---EP------EILLL----------DEPTSAL------------------------D  214 (286)
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------C
Confidence            3456899999999999988887   66      78888          7755555                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       -..|.++... -|=.+|+|++-.... +|+.+-+
T Consensus       215 ~~--~~~~l-------~~~L~~~~~~-~tvIivsH~~~~~~~~~d~i~~L  254 (286)
T PRK14275        215 PK--ATAKI-------EDLIQELRGS-YTIMIVTHNMQQASRVSDYTMFF  254 (286)
T ss_pred             HH--HHHHH-------HHHHHHHhcC-CeEEEEeCCHHHHHHhCCEEEEE
Confidence            33  34444       4456666542 344455898877544 6766544

>PLN03232 ABC transporter C family member; Provisional

Probab=83.93  E-value=1.2  Score=56.15  Aligned_cols=74  Identities=9%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||=  |++  ..     ++|+.+          ||.-+-+                        |.  
T Consensus       739 ~~LSGGQkQRIaLAR--Aly--~~-----~~IlLL----------DEptSaL------------------------D~--  773 (1495)
T PLN03232        739 VNISGGQKQRVSMAR--AVY--SN-----SDIYIF----------DDPLSAL------------------------DA--  773 (1495)
T ss_pred             cccCHHHHHHHHHHH--HHh--cC-----CCEEEE----------cCCcccc------------------------CH--
Confidence            479999999999985  333  23     589999          7766666                        32  


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       .+++..-     .+.+.... ...|+-+|||+.-+...+|+.+-+
T Consensus       774 -~t~~~I~-----~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L  812 (1495)
T PLN03232        774 -HVAHQVF-----DSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILV  812 (1495)
T ss_pred             -HHHHHHH-----HHHhhhhh-cCCEEEEEECChhhHHhCCEEEEE
Confidence             3443210     11222221 347999999999999999987755

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=83.87  E-value=1  Score=44.58  Aligned_cols=29  Identities=17%  Similarity=0.057  Sum_probs=24.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      ..+..||||||..++||..|+.   +|      ++..+
T Consensus       100 ~~~~~lS~G~~qrv~la~al~~---~p------~llll  128 (213)
T PRK15177        100 DRVSEYSVTMKTHLAFAINLLL---PC------RLYIA  128 (213)
T ss_pred             chHhhcCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            3556799999999999999875   56      78888

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=83.68  E-value=1  Score=50.72  Aligned_cols=73  Identities=19%  Similarity=0.092  Sum_probs=50.6

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||..++||..++.   +|      +|..+          ||-..-+                        
T Consensus       440 ~~~~~~LSgG~~qrv~la~al~~---~p------~lllL----------DEPt~~L------------------------  476 (556)
T PRK11819        440 QKKVGVLSGGERNRLHLAKTLKQ---GG------NVLLL----------DEPTNDL------------------------  476 (556)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCCCCC------------------------
Confidence            34577999999999999998875   66      88888          7755544                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      |..  +...+       ++.|.++.   .|-.+|+|+.-...+ +|+.+
T Consensus       477 D~~--~~~~l-------~~~l~~~~---~tvi~vtHd~~~~~~~~d~i~  513 (556)
T PRK11819        477 DVE--TLRAL-------EEALLEFP---GCAVVISHDRWFLDRIATHIL  513 (556)
T ss_pred             CHH--HHHHH-------HHHHHhCC---CeEEEEECCHHHHHHhCCEEE
Confidence            444  55555       55566653   365555999877666 46654

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=82.73  E-value=0.87  Score=50.18  Aligned_cols=32  Identities=34%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      .||||||++.|||=.|.    +.     +||..+          ||-.+-+
T Consensus       470 ~LSGGQrQRiaiARall----~~-----~~iliL----------DE~TSaL  501 (529)
T TIGR02868       470 RLSGGERQRLALARALL----AD-----APILLL----------DEPTEHL  501 (529)
T ss_pred             cCCHHHHHHHHHHHHHh----cC-----CCEEEE----------eCCcccC
Confidence            69999999999986543    33     489999          8877777

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PTZ00243 ABC transporter; Provisional

Probab=82.65  E-value=0.99  Score=57.24  Aligned_cols=83  Identities=23%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||++.|||=.|  .+ ++     ++|..+          ||-.+-+                        |.+ 
T Consensus      1444 ~nLSgGQrQrLaLARAL--L~-~~-----~~ILlL----------DEATSaL------------------------D~~- 1480 (1560)
T PTZ00243       1444 SNYSVGQRQLMCMARAL--LK-KG-----SGFILM----------DEATANI------------------------DPA- 1480 (1560)
T ss_pred             CcCCHHHHHHHHHHHHH--hc-CC-----CCEEEE----------eCCCccC------------------------CHH-
Confidence            57999999999998644  33 34     589999          7755544                        322 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCCC
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSPN  668 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~~  668 (926)
                        .++.-      ++.|.+... ..|-..|+|..-|...+|+.+=+   ..+|.|.|.
T Consensus      1481 --te~~I------q~~L~~~~~-~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243       1481 --LDRQI------QATVMSAFS-AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred             --HHHHH------HHHHHHHCC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHH
Confidence              33332      333444322 36778889999999999998755   345666654

>KOG2391|consensus

Probab=82.07  E-value=41  Score=38.16  Aligned_cols=53  Identities=23%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy834          405 PLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATY  457 (926)
Q Consensus       405 EfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIF  457 (926)
                      ++.+-..+|++.++.|+....+|...|+.|+.+.++++.++=+-++-.+++.|
T Consensus       243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~  295 (365)
T KOG2391|consen  243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAI  295 (365)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhh
Confidence            34556677788888888899999999999999999977776554444444433

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=82.04  E-value=1.1  Score=49.49  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||.+++||-.++-   +|      +|..+          ||-.+-|                        |-
T Consensus       136 ~~~~LSgGerQRv~IArAL~~---~P------~iLLL----------DEPtsgL------------------------D~  172 (402)
T PRK09536        136 PVTSLSGGERQRVLLARALAQ---AT------PVLLL----------DEPTASL------------------------DI  172 (402)
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CH
Confidence            457999999999999999885   67      78888          6644444                        22


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  ....+       .++|.++....-|=.+++|..-...+ +|+.+-+
T Consensus       173 ~--~~~~l-------~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l  212 (402)
T PRK09536        173 N--HQVRT-------LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL  212 (402)
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            2  22334       56788887644454444888777766 5776544

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=81.90  E-value=1.1  Score=48.98  Aligned_cols=28  Identities=32%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      ...+||||||++||||-.++.   +|      .|..+
T Consensus       146 ~~~~LSgGq~QRVaLARAL~~---~P------~lLLL  173 (377)
T PRK11607        146 KPHQLSGGQRQRVALARSLAK---RP------KLLLL  173 (377)
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            345899999999999999987   77      56666

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=81.34  E-value=1.5  Score=45.82  Aligned_cols=73  Identities=18%  Similarity=0.037  Sum_probs=48.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||.+++||-.++.   +|      +|..+          ||-.+-+                        |-. 
T Consensus       137 ~~LS~G~~qrl~LaRall~---~p------~illl----------DEpts~L------------------------D~~-  172 (275)
T cd03289         137 CVLSHGHKQLMCLARSVLS---KA------KILLL----------DEPSAHL------------------------DPI-  172 (275)
T ss_pred             CCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECccccC------------------------CHH-
Confidence            4899999999999988876   56      77888          6655555                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +...+       .+.|.++.. .-|=.+|+|..-+..-.|+.+-+
T Consensus       173 -~~~~l-------~~~l~~~~~-~~tii~isH~~~~i~~~dri~vl  209 (275)
T cd03289         173 -TYQVI-------RKTLKQAFA-DCTVILSEHRIEAMLECQRFLVI  209 (275)
T ss_pred             -HHHHH-------HHHHHHhcC-CCEEEEEECCHHHHHhCCEEEEe
Confidence             23333       455555543 34545559998877667766544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=81.30  E-value=37  Score=31.29  Aligned_cols=76  Identities=9%  Similarity=0.084  Sum_probs=57.4

Q ss_pred             ChhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy834          380 DRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKH--TRRQKFENMYDFVNDNIDAT  456 (926)
Q Consensus       380 dleeL~~eL~~KLk~vnkKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDK--EKrEAFmkTFKQVNenFsEI  456 (926)
                      ++......+. -|+.-|..+..+|.++.+....+....++|......++..+..|+.  .....|+.+-..+..+-..+
T Consensus        15 el~~t~~d~~-LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L   92 (99)
T PF10046_consen   15 ELEATNEDYN-LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL   92 (99)
T ss_pred             hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666 7777778899999999999999999999999988888888888886  45555666655555554443

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=81.24  E-value=1.2  Score=51.42  Aligned_cols=71  Identities=20%  Similarity=0.053  Sum_probs=49.1

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||-.|+-   +|      +|..+          ||--+-+                        |.. 
T Consensus       581 ~~LSgGqkQRl~iARal~~---~p------~illL----------DEpts~L------------------------D~~-  616 (659)
T TIGR00954       581 DVLSGGEKQRIAMARLFYH---KP------QFAIL----------DECTSAV------------------------SVD-  616 (659)
T ss_pred             cCCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------CHH-
Confidence            5899999999999988875   66      88888          6644444                        322 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +...+       .+.|.+   ...|-.+|+|++-+....|+.+-+
T Consensus       617 -~~~~l-------~~~l~~---~~~tvI~isH~~~~~~~~d~il~l  651 (659)
T TIGR00954       617 -VEGYM-------YRLCRE---FGITLFSVSHRKSLWKYHEYLLYM  651 (659)
T ss_pred             -HHHHH-------HHHHHH---cCCEEEEEeCchHHHHhCCEEEEE
Confidence             23333       122333   245667779999999888887755

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=81.11  E-value=1.1  Score=49.27  Aligned_cols=75  Identities=17%  Similarity=0.087  Sum_probs=49.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +.+||||||.+++||..||.   +|      .|..+          ||-.+-+                        |..
T Consensus       162 ~~~LSgGq~QRV~LARALa~---~P------~ILLl----------DEPts~L------------------------D~~  198 (382)
T TIGR03415       162 PGELSGGMQQRVGLARAFAM---DA------DILLM----------DEPFSAL------------------------DPL  198 (382)
T ss_pred             hhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCccC------------------------CHH
Confidence            35899999999999999985   66      77777          6655444                        222


Q ss_pred             CCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        ....+       ++.|.++... .-|=.+|+|..-...+ .|+.+-+
T Consensus       199 --~r~~l-------~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl  238 (382)
T TIGR03415       199 --IRTQL-------QDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM  238 (382)
T ss_pred             --HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              22233       6667777654 4455556998776444 5665433

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=80.98  E-value=2.1  Score=47.64  Aligned_cols=29  Identities=10%  Similarity=-0.090  Sum_probs=24.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      +.+..||||||.+++||..|+.   +|      +|..+
T Consensus       151 ~~~~~LSgGq~qrv~lA~aL~~---~p------~lLlL  179 (530)
T PRK15064        151 GLMSEVAPGWKLRVLLAQALFS---NP------DILLL  179 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            3567999999999999999875   66      78888

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=80.97  E-value=1.3  Score=51.15  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||..++||.-|+.   +|      ++..+          ||-..-+                        |.. 
T Consensus       143 ~~LS~Gq~qrv~LAraL~~---~P------~lLll----------DEP~~gL------------------------D~~-  178 (648)
T PRK10535        143 SQLSGGQQQRVSIARALMN---GG------QVILA----------DEPTGAL------------------------DSH-  178 (648)
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------CHH-
Confidence            3899999999999998887   67      66777          6655555                        444 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +...+       .++|.++....-|=.+|+|++.....+|+.+-+
T Consensus       179 -s~~~l-------~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l  216 (648)
T PRK10535        179 -SGEEV-------MAILHQLRDRGHTVIIVTHDPQVAAQAERVIEI  216 (648)
T ss_pred             -HHHHH-------HHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEE
Confidence             44555       667777765444545559999888778877544

>PLN03073 ABC transporter F family; Provisional

Probab=80.74  E-value=2  Score=50.72  Aligned_cols=30  Identities=23%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      .+.+..||||||+++|||..|+.   +|      +|..+
T Consensus       622 ~~~~~~LSgGqkqRvaLAraL~~---~p------~lLLL  651 (718)
T PLN03073        622 LQPMYTLSGGQKSRVAFAKITFK---KP------HILLL  651 (718)
T ss_pred             cCCccccCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            45688999999999999998885   66      88888

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=80.65  E-value=0.83  Score=50.52  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=23.5

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHHhcccc
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTIWKLVV  557 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAIQKcDP  557 (926)
                      .|......|||||||++||+|=-+|.   +|
T Consensus       133 dk~~~yP~qLSGGQKQRVaIARALa~---~P  160 (339)
T COG1135         133 DKADRYPAQLSGGQKQRVAIARALAN---NP  160 (339)
T ss_pred             hhhccCchhcCcchhhHHHHHHHHhc---CC
Confidence            45556678999999999999998887   67

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=80.53  E-value=1.5  Score=45.68  Aligned_cols=75  Identities=16%  Similarity=0.068  Sum_probs=50.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||..++||..++-   +|      ++..+          ||-..-+                        |-
T Consensus       130 ~~~~LS~G~~qrv~la~al~~---~p------~lliL----------DEPt~gL------------------------D~  166 (301)
T TIGR03522       130 KIGQLSKGYRQRVGLAQALIH---DP------KVLIL----------DEPTTGL------------------------DP  166 (301)
T ss_pred             chhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            357899999999999988866   77      77788          6644444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. .-|=.+++|..-...+ +|+.+-+
T Consensus       167 ~--~~~~l-------~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l  205 (301)
T TIGR03522       167 N--QLVEI-------RNVIKNIGK-DKTIILSTHIMQEVEAICDRVIII  205 (301)
T ss_pred             H--HHHHH-------HHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence            3  45555       567777765 3443444888876655 5766544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=80.51  E-value=1.5  Score=50.36  Aligned_cols=29  Identities=24%  Similarity=0.142  Sum_probs=25.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      +.+..||||||++||||-.|+.   +|      +|..+
T Consensus       152 ~~~~~LSgGekqRv~LAraL~~---~P------~lLLL  180 (635)
T PRK11147        152 AALSSLSGGWLRKAALGRALVS---NP------DVLLL  180 (635)
T ss_pred             CchhhcCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            4678999999999999999986   66      78888

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=80.29  E-value=1.1  Score=47.53  Aligned_cols=30  Identities=27%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      .+.+..||||||++|.||..+|=   +|      |+-.+
T Consensus       133 ~r~~~~LSGGerQrv~iArALaQ---~~------~iLLL  162 (258)
T COG1120         133 DRPVDELSGGERQRVLIARALAQ---ET------PILLL  162 (258)
T ss_pred             cCcccccChhHHHHHHHHHHHhc---CC------CEEEe
Confidence            45689999999999999999884   44      77777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	926
1w1w_A	430	Sc Smc1hd:scc1-c Complex, Atpgs Length = 430		2e-09

>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs Length = 430

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 29/123 (23%)
Query: 430 KFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSN 489
           +F K+K  R++ FE  +D+V+D++DA Y+   K+    V L                   
Sbjct: 257 QFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVEL------------------- 297
Query: 490 LFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMI 549
                    + G+A L I   E EP+ AG+ +  TP  + +  +++LSGGE+T+AALA++
Sbjct: 298 ---------AGGNASLTIED-EDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALL 347
Query: 550 FTI 552
           F I
Sbjct: 348 FAI 350

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	926
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3kta_B	173	Chromosome segregation protein SMC; structural mai	3e-05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	1e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	3e-04

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 33/154 (21%)

Query: 401 QRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVH 460
            R      R      + + L      +  +F K+K  R++ FE  +D+V+D++DA Y+  
Sbjct: 228 SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYR-- 285

Query: 461 LKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSF--GHAFLDITGAEQEPYLAG 518
                                        L            G+A L I   + EP+ AG
Sbjct: 286 ----------------------------ELTKNPNSNVELAGGNASLTIEDED-EPFNAG 316

Query: 519 MNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTI 552
           + +  TP  + +  +++LSGGE+T+AALA++F I
Sbjct: 317 IKYHATPPLKRFKDMEYLSGGEKTVAALALLFAI 350

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 80/598 (13%), Positives = 162/598 (27%), Gaps = 211/598 (35%)

Query: 66  IQHTESSTSSSNSEQNLRELTKATTYIQN----IESLLSQASDLIERRQLEAHRILYVLL 121
            +  +    S  S++ +  +  +   +        +LLS+  +++++   E  RI Y  L
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 122 --KFRTELEGTHQSYDSGSDQAGFISPME-TQDENPPSEHSSEFPGVERCLRRIESSLLN 178
               +TE                +I   +   ++N        F   +  + R++   L 
Sbjct: 95  MSPIKTEQRQPSMMTRM------YIEQRDRLYNDNQV------FA--KYNVSRLQP-YLK 139

Query: 179 VRDLLENRPSDTLSPAQ------------SEVQAEFLSGESREE--------LTFANESS 218
           +R  L       L PA+            + V  +       +         L   N +S
Sbjct: 140 LRQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 219 ETNSQGVPRAERIMQRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELS-----PPTPG 273
                     E +++ ++  L Q+      R              Q EL       P   
Sbjct: 195 P---------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE- 244

Query: 274 PNPNSRA--------NPNP----NPNSR-----ANPNLSRRAQANNSAQNPL------FS 310
                          N       N + +         ++    A  +    L       +
Sbjct: 245 -----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 311 KGEHL----------CGTLNFQDCTPHPLIIKI---------------QQVFLYKKSCIS 345
             E               L  +  T +P  + I               + V   K + I 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI- 358

Query: 346 FSPRRESLDSIGSSPSKQH---------SVGHTTSCNIPLR-----WQDRGGVCRQHDVK 391
                 SL+ +  +  ++          S       +IP       W D         V 
Sbjct: 359 ---IESSLNVLEPAEYRKMFDRLSVFPPSA------HIPTILLSLIWFDVIKSDVMVVVN 409

Query: 392 MQLQ----LNKEQQ----RLAPLLDRLRRYEADLKALYKR---RWILQKKFD-------- 432
            +L     + K+ +     +  +   L+    +  AL++     + + K FD        
Sbjct: 410 -KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 433 --------------KVKHTRRQK-FENMY-DF--------------------VNDNID-A 455
                          ++H  R   F  ++ DF                    +N      
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 456 TYKVHLKSSACQ----VYLIVSGWPKKKENLVI-----VVQSNLFSP------QALTQ 498
            YK ++  +  +    V  I+   PK +ENL+      +++  L +       +A  Q
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 5e-08
 Identities = 74/532 (13%), Positives = 150/532 (28%), Gaps = 162/532 (30%)

Query: 387 QHDVKMQLQLNKEQQRLAPLL-DRLRRYEADL---------KALYKRR---WILQKKFDK 433
            H   M  +  + Q +   +L      +  +          K++  +     I+  K D 
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DA 60

Query: 434 VKHTRR------QKFENMYD-FVNDNIDATYK---VHLKSSACQVYLIVSGWPKKKENLV 483
           V  T R       K E M   FV + +   YK     +K+   Q  ++   + ++++ L 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 484 IVVQSNLFSPQALTQSFGHAFLDITGA----EQEPYLA--GMNFSCTPQGRSYVGIQHLS 537
              Q  +F+   +++     +L +  A         +   G+           +G     
Sbjct: 121 NDNQ--VFAKYNVSRL--QPYLKLRQALLELRPAKNVLIDGV-----------LGS---- 161

Query: 538 GGERTLAALA---------MIFTI-WKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPG 587
            G+  +A            M F I W  +        +    Q                 
Sbjct: 162 -GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----------------- 203

Query: 588 PNPHSRVNPNPNSRANPNPNPNSRAN--PNLSRRAQANNSAQNPL--------PEVSSSP 637
                +++PN  SR++ + N   R +      RR   +   +N L         +  ++ 
Sbjct: 204 -KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 638 NTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYT 697
           N   ++    TTR +       Q  +  S  T + +    +  +        ++   KY 
Sbjct: 263 NLSCKILL--TTRFK-------QVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKY- 310

Query: 698 LQSTKSNLSRRAQANNSAQNPLP------EVSSSPNTRSRVQSSPTTRSRVQSSPTTRSR 751
           L     +L R         NP         +     T    +        V     T   
Sbjct: 311 LDCRPQDLPREVLTT----NPRRLSIIAESIRDGLATWDNWK-------HVNCDKLTTI- 358

Query: 752 VQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQS------SANI----------RSAEQGS 795
                     ++SSL +          R           SA+I             +   
Sbjct: 359 ----------IESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 796 PSI------RSAVQRSPNTRSRVQSSLTTHSAEQGSPTTRSTVQGAPRIHSR 841
             +       S V++ P      +S+++  S        +  ++    +H  
Sbjct: 405 MVVVNKLHKYSLVEKQPK-----ESTISIPSIYL---ELKVKLENEYALHRS 448

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-04
 Identities = 75/480 (15%), Positives = 127/480 (26%), Gaps = 183/480 (38%)

Query: 131 HQSYDSGSDQAG-----------FISPMETQDENPPSEHSSEFPGVERCLRRIESS---- 175
           H  +++G  Q             F+   + +D             V+   + I S     
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-------------VQDMPKSILSKEEID 52

Query: 176 -LLNVRDLLEN--RPSDTLSPAQSEVQAEFLSGESREELTFANESSETNSQGVPRAERIM 232
            ++  +D +    R   TL   Q E+  +F+    R    F                 +M
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----------------LM 95

Query: 233 QRIESSLLQVRNLLELRPLTPPPQSDPESGTQGELSPPTPGPNPNSRANPNPNPNSRANP 292
             I++   Q                           P         + +   N N     
Sbjct: 96  SPIKTEQRQ---------------------------PSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 293 -NLSRRAQANNSAQNPLFS------------KGEHLCG-T-------------------- 318
            N+SR  Q     +  L               G    G T                    
Sbjct: 129 YNVSRL-QPYLKLRQALLELRPAKNVLIDGVLG---SGKTWVALDVCLSYKVQCKMDFKI 184

Query: 319 --LNFQDCTPHPLIIKIQQVFLYKKSCISFSPRRESLDSIGSSPSKQHSVGHTTSCNIPL 376
             LN ++C     ++++ Q  LY+            +D   +S S         S NI L
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ------------IDPNWTSRSDH-------SSNIKL 225

Query: 377 RWQDRGGVCRQHDVKMQLQLNKEQQRLAPLLDRLRRYEADLKAL--YKRRWILQKKFD-- 432
           R                  ++  Q  L  LL + + YE  L  L   +        F+  
Sbjct: 226 R------------------IHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAW-NAFNLS 265

Query: 433 -KVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENL---VIVVQS 488
            K+  T R K       V D + A    H+      + L     P + ++L    +  + 
Sbjct: 266 CKILLTTRFK------QVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315

Query: 489 NLFSPQALTQSFGHAF-LDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGG-ERTLAAL 546
                + LT    +   L I            +   T     +V    L+   E +L  L
Sbjct: 316 QDLPREVLT---TNPRRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIESSLNVL 366

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* Length = 173

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 501 GHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKL 555
           G A L +   E +P+  G+     P G+    I+ +SGGE+ L ALA +F I K 
Sbjct: 31  GSARLILENPE-DPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKF 84

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 11/196 (5%)

Query: 578 QGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSP 637
           Q +++   P    H          A  N   +       S  +  +     P      + 
Sbjct: 297 QSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTL 356

Query: 638 NTRSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYT 697
             +     +  + S+           + S ++R    SS+        S  SRTR     
Sbjct: 357 AKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTR----- 411

Query: 698 LQSTKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPT 757
                       +  +  Q   P  S+ P   S  + S   ++        +     +  
Sbjct: 412 ---ATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNY---ESALKGIEGLNFD 465

Query: 758 TRSRVQSSLTIQSAEQ 773
              RVQ +  ++    
Sbjct: 466 GDERVQYAAALEHHHH 481

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 17/184 (9%), Positives = 52/184 (28%), Gaps = 2/184 (1%)

Query: 640 RSRVQSSPTTRSRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPISRTRFTKYTLQ 699
            +             S L   + +    +     ++S       + +P           Q
Sbjct: 300 IASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQ 359

Query: 700 STKSNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSPTTRSRVQSSPTTR 759
             K+ +   A  +              +  SR  +  ++R  +    +  SR +++  + 
Sbjct: 360 --KAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTRATDASP 417

Query: 760 SRVQSSLTIQSAEQGSPNTRSRVQSSANIRSAEQGSPSIRSAVQRSPNTRSRVQSSLTTH 819
              + +   Q +   +        S+ +  + +    +++     + +   RVQ +    
Sbjct: 418 GAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGIEGLNFDGDERVQYAAALE 477

Query: 820 SAEQ 823
               
Sbjct: 478 HHHH 481

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	926
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.9
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.85
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.63
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.43
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.94
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.79
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.72
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.5
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.26
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.63
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.28
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.24
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.1
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.8
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.75
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.7
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.42
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.31
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.29
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.26
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.24
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.23
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.22
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.17
1g6h_A	257	High-affinity branched-chain amino acid transport	94.05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.04
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.73
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	93.57
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	93.52
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.46
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.46
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.42
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.41
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.37
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.35
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.03
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.87
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.74
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	92.28
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.21
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	91.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.81
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	91.79
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.9
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.55
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	90.2
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	89.48
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	89.45
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	89.29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.26
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	88.43
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	88.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	87.53
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	87.45
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	87.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	86.9
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	86.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	85.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	85.63
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	85.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	85.04
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	84.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	84.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	84.13
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	83.85
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	83.39
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	82.55

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.90  E-value=3.8e-24  Score=202.07  Aligned_cols=144  Identities=21%  Similarity=0.368  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCC
Q psy834          434 VKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQE  513 (926)
Q Consensus       434 LDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeED  513 (926)
                      +|++|+++|++||++|+.+|.++|+.|+                                     .||++.|.+ ++++|
T Consensus         1 ~~~~~~~~f~~~f~~i~~~f~~~f~~L~-------------------------------------~~g~~~l~l-~~~~~   42 (173)
T 3kta_B            1 MEKEKKNVFMRTFEAISRNFSEIFAKLS-------------------------------------PGGSARLIL-ENPED   42 (173)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHS-------------------------------------TTCEEEEEE-SCSSS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------------------------CCCEEEEEe-eCCCC
Confidence            5789999999999999999999999985                                     488999999 77899


Q ss_pred             ccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          514 PYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSR  593 (926)
Q Consensus       514 PFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~  593 (926)
                      ||..||.|.|.|+|+..+.+..||||||+++|||++||++.++|     +||+.+          ||.++.|        
T Consensus        43 ~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~-----~~~llL----------DEp~a~L--------   99 (173)
T 3kta_B           43 PFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKP-----APFYLF----------DEIDAHL--------   99 (173)
T ss_dssp             GGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSC-----CSEEEE----------ESTTTTC--------
T ss_pred             ccccCceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCC-----CCEEEE----------CCCccCC--------
Confidence            99999999999999999999999999999999999999999999     999999          9999999        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCC
Q psy834          594 VNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                                      |..  |..++       +++|.+++..  +-++| +|+..++..+|+++||+| +.|+
T Consensus       100 ----------------D~~--~~~~~-------~~~l~~~~~~--~~~ivith~~~~~~~ad~i~~v~~-~~g~  145 (173)
T 3kta_B          100 ----------------DDA--NVKRV-------ADLIKESSKE--SQFIVITLRDVMMANADKIIGVSM-RDGV  145 (173)
T ss_dssp             ----------------CHH--HHHHH-------HHHHHHHTTT--SEEEEECSCHHHHTTCSEEEEEEE-ETTE
T ss_pred             ----------------CHH--HHHHH-------HHHHHHhccC--CEEEEEEecHHHHHhCCEEEEEEe-cCCE
Confidence                            887  88898       6788888754  34555 999999999999999999 6675

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.85  E-value=4.1e-22  Score=205.24  Aligned_cols=194  Identities=24%  Similarity=0.358  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCC
Q psy834          397 NKEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWP  476 (926)
Q Consensus       397 kKAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP  476 (926)
                      .+|+++|+++.+++.++..+++++++....+.+.|++|++++.+.|+.+|+.|+.+|.++|+.|+.+...|+        
T Consensus       224 ~~a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~--------  295 (430)
T 1w1w_A          224 GPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNV--------  295 (430)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc--------
Confidence            478999999999999999999999999999999999999999999999999999999999999873211110        


Q ss_pred             CcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhccc
Q psy834          477 KKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLV  556 (926)
Q Consensus       477 ~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcD  556 (926)
                                   .+       .||.+.|.+ .++.++|..|+.|.+.||++.++.+..||||||+++|||++||++.+.
T Consensus       296 -------------~~-------~~g~~~l~~-~d~~~~~~~g~~~~~~~~~~~~~~~~~lS~Gq~~~~~la~~la~~~~~  354 (430)
T 1w1w_A          296 -------------EL-------AGGNASLTI-EDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQ  354 (430)
T ss_dssp             ------------------------CEEEEC-------------CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSS
T ss_pred             -------------cC-------CCceEEEEe-cCCCCcccCceEEEEECCCccccccccCCcchHHHHHHHHHHHHhcCC
Confidence                         11       388999988 566789999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccC
Q psy834          557 VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSS  636 (926)
Q Consensus       557 P~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~  636 (926)
                      |     .||+.+          ||+++.|                        |..  +..++       ++.|.++...
T Consensus       355 ~-----~~~lll----------DEp~~~L------------------------D~~--~~~~l-------~~~l~~~~~~  386 (430)
T 1w1w_A          355 P-----SPFFVL----------DEVDAAL------------------------DIT--NVQRI-------AAYIRRHRNP  386 (430)
T ss_dssp             C-----CSEEEE----------SSTTTTC------------------------CHH--HHHHH-------HHHHHHHCBT
T ss_pred             C-----CCEEEe----------CCCcccC------------------------CHH--HHHHH-------HHHHHHHhcC
Confidence            9     999999          9999999                        877  88888       6677777654


Q ss_pred             CCceeEeecChhhHHhhhhhcceeee-cCCCC
Q psy834          637 PNTRSRVQSSPTTRSRVQSSLTIQSA-EQGSP  667 (926)
Q Consensus       637 ~~tr~~v~~~~~t~sr~~~~~~v~~a-E~G~~  667 (926)
                      ..+=++|+|++.++..+|++++|+|. |.|+-
T Consensus       387 ~~~~ii~th~~~~~~~~d~~~~~~~~~~~~~s  418 (430)
T 1w1w_A          387 DLQFIVISLKNTMFEKSDALVGVYRQQQENSS  418 (430)
T ss_dssp             TBEEEEECSCHHHHTTCSEEEEEEEETTTTEE
T ss_pred             CCEEEEEECCHHHHHhCCEEEEEEEeCCCCee
Confidence            33334449999999999999999998 56753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.63  E-value=3.3e-08  Score=98.86  Aligned_cols=134  Identities=21%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEE
Q psy834          444 NMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSC  523 (926)
Q Consensus       444 kTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISV  523 (926)
                      ..|+.|.++|..+|+.+.                                     .||.+.+.+.....+.+..|+.+.+
T Consensus       165 ~~y~rv~e~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~g~~~~~  207 (322)
T 1e69_A          165 GSYQRVNESFNRFISLLF-------------------------------------FGGEGRLNIVSEAKSILDAGFEISI  207 (322)
T ss_dssp             --CHHHHHHHHHHHHHHH-------------------------------------TSCEEEC--------------CCEE
T ss_pred             HHHHHHHHHHHHHHHHhc-------------------------------------CCceEEEEeeccccccccCCeEEEE
Confidence            457788888888888753                                     1333444331111222334677777


Q ss_pred             eCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          524 TPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRAN  603 (926)
Q Consensus       524 SPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~  603 (926)
                      .++++....+..||||||.+++||..||+..+.+     .||+.+          ||..+-|                  
T Consensus       208 ~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~-----~~~lll----------DEp~~~L------------------  254 (322)
T 1e69_A          208 RKPGRRDQKLSLLSGGEKALVGLALLFALMEIKP-----SPFYVL----------DEVDSPL------------------  254 (322)
T ss_dssp             ECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSC-----CSEEEE----------ESCCSSC------------------
T ss_pred             ecCccccCchhhCCHHHHHHHHHHHHHHHhccCC-----CCEEEE----------eCCCCCC------------------
Confidence            7777777788999999999999999999887777     799999          9988888                  


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeeec
Q psy834          604 PNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSAE  663 (926)
Q Consensus       604 ~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~aE  663 (926)
                            |..  +..++       .+.|.++.. ..|=++|+|++..+.-.|+..+|.|..
T Consensus       255 ------D~~--~~~~l-------~~~l~~~~~-~~~vi~~tH~~~~~~~~d~~~~v~~~~  298 (322)
T 1e69_A          255 ------DDY--NAERF-------KRLLKENSK-HTQFIVITHNKIVMEAADLLHGVTMVN  298 (322)
T ss_dssp             ------CHH--HHHHH-------HHHHHHHTT-TSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred             ------CHH--HHHHH-------HHHHHHhcC-CCeEEEEECCHHHHhhCceEEEEEEeC
Confidence                  655  66777       567777743 334455599987777788888898864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.43  E-value=6e-06  Score=87.96  Aligned_cols=94  Identities=14%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             ceEEEEeC-CCCcccccccC-chhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTP-QGRSYVGIQHL-SGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN  595 (926)
Q Consensus       518 GVeISVSP-PGKr~QsIQQL-SGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~  595 (926)
                      .|.|.+.. +|...+.+..| |||||++++||..++.   +|.  .  |+..+          ||.++-+          
T Consensus       378 ~v~~~~~~~~~~~~~~~~~l~SgG~~qrv~la~~l~~---~~~--~--~~lil----------DEp~~gl----------  430 (517)
T 4ad8_A          378 DVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVL---GAD--T--PSVVF----------DEVDAGI----------  430 (517)
T ss_dssp             EEEEEEESSTTSCCCBSSSSSCSSHHHHHHHHHHHHH---CCC--S--SEEEE----------CSCSSSC----------
T ss_pred             eeeeeccCCCCCCcccHHhcCCHHHHHHHHHHHHHHh---CCC--C--CEEEE----------eCCcCCC----------
Confidence            45565555 56678899998 9999999999995553   340  1  78999          9988888          


Q ss_pred             CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834          596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA  662 (926)
Q Consensus       596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a  662 (926)
                                    |..  +...+       .+.|.+++. ..|=.+|||.+-.....|+.+.|...
T Consensus       431 --------------d~~--~~~~i-------~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          431 --------------GGA--AAIAV-------AEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             --------------CTH--HHHHH-------HHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             --------------CHH--HHHHH-------HHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEEecc
Confidence                          655  56666       567888876 45545559999999999999887654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.94  E-value=5.3e-05  Score=77.42  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             eEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhc---cc-cCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          519 MNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWK---LV-VRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRV  594 (926)
Q Consensus       519 VeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQK---cD-P~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~  594 (926)
                      +.|.+..+++. ..+..||||||.+++|||.+|+-+   .+ |      |+..+          ||+.+-+         
T Consensus       265 ~~~~~~~~~~~-~~~~~lS~G~~~~~~lal~la~a~~l~~~~~------~~lll----------DEp~~~L---------  318 (371)
T 3auy_A          265 FEVRVHAPNGV-LTIDNLSGGEQIAVALSLRLAIANALIGNRV------ECIIL----------DEPTVYL---------  318 (371)
T ss_dssp             CCEEEEETTEE-ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCC------SEEEE----------ESTTTTC---------
T ss_pred             eeEEEEcCCCc-cchHhcCHHHHHHHHHHHHHHHHHHHhcCCC------CeEEE----------eCCCCcC---------
Confidence            56666665543 367789999999999998877643   35 5      89999          9988888         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee
Q psy834          595 NPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       595 ~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~  660 (926)
                                     |..  ....+       .+.|.++... .+=++|+|.+-...-.|+.+-|.
T Consensus       319 ---------------D~~--~~~~l-------~~~l~~~~~~-~~vi~~th~~~~~~~~d~~~~l~  359 (371)
T 3auy_A          319 ---------------DEN--RRAKL-------AEIFRKVKSI-PQMIIITHHRELEDVADVIINVK  359 (371)
T ss_dssp             ---------------CHH--HHHHH-------HHHHHHCCSC-SEEEEEESCGGGGGGCSEEEEEE
T ss_pred             ---------------CHH--HHHHH-------HHHHHHhccC-CeEEEEEChHHHHhhCCEEEEEE
Confidence                           544  44444       4456665433 45566699987666667766553

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.79  E-value=0.00016  Score=73.28  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=63.8

Q ss_pred             eEEEEeCC-CCcccccccC-chhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          519 MNFSCTPQ-GRSYVGIQHL-SGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNP  596 (926)
Q Consensus       519 VeISVSPP-GKr~QsIQQL-SGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~  596 (926)
                      +.+.+... +...+.+..| |||||++++||+.++-   +|  .  .|+..+          ||+++=|           
T Consensus       277 ~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~---~~--~--~~~LlL----------DEpt~~L-----------  328 (415)
T 4aby_A          277 VLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVL---GA--D--TPSVVF----------DEVDAGI-----------  328 (415)
T ss_dssp             EEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHH---CC--S--SSEEEE----------SSTTTTC-----------
T ss_pred             EEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHh---CC--C--CCEEEE----------ECCCCCC-----------
Confidence            34455543 3345666666 9999999999996553   44  1  189999          9988888           


Q ss_pred             CCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          597 NPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       597 ~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                                   |..  ....+       .+.|.+++ ..-|=++|||.+-..+.+|+.+-|
T Consensus       329 -------------D~~--~~~~l-------~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l  368 (415)
T 4aby_A          329 -------------GGA--AAIAV-------AEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKV  368 (415)
T ss_dssp             -------------CHH--HHHHH-------HHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEE
T ss_pred             -------------CHH--HHHHH-------HHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEE
Confidence                         544  55566       66778887 345666779999888888887765

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.72  E-value=2.9e-05  Score=78.45  Aligned_cols=88  Identities=15%  Similarity=0.060  Sum_probs=59.1

Q ss_pred             CCcccccccCchhHHHHHHHHHHHHHhc--cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          527 GRSYVGIQHLSGGERTLAALAMIFTIWK--LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANP  604 (926)
Q Consensus       527 GKr~QsIQQLSGGEKSLVALALIFAIQK--cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~  604 (926)
                      ....+.+..||||||.+++||+.+|+-+  +..     .||..+          ||..+-|                   
T Consensus       240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~-----p~~lll----------DEp~~~L-------------------  285 (339)
T 3qkt_A          240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGE-----ISLLIL----------DEPTPYL-------------------  285 (339)
T ss_dssp             TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTT-----TCEEEE----------ECCCTTC-------------------
T ss_pred             ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCC-----CCEEEE----------ECCCCCC-------------------
Confidence            3456788999999999998876655532  222     488888          7755555                   


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcceeee
Q psy834          605 NPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQSA  662 (926)
Q Consensus       605 ~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~~a  662 (926)
                           |..  ....+       .+.|.++.....|=++|+|++-.+..+|+.+-+.+.
T Consensus       286 -----D~~--~~~~l-------~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~~~  329 (339)
T 3qkt_A          286 -----DEE--RRRKL-------ITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE  329 (339)
T ss_dssp             -----CHH--HHHHH-------HHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEE
T ss_pred             -----CHH--HHHHH-------HHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEEec
Confidence                 333  33333       455666655444556669998888888888877653

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.50  E-value=0.00015  Score=67.18  Aligned_cols=94  Identities=14%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             ceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHh--ccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          518 GMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIW--KLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVN  595 (926)
Q Consensus       518 GVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQ--KcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~  595 (926)
                      |+.+.+... ...+.+..||||||.+++||+.|||-  .+..     .++..+          ||-.+-+          
T Consensus        41 ~~~l~~~~~-~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~-----p~lllL----------DEPt~~L----------   94 (148)
T 1f2t_B           41 KVRLFVVWE-GKERPLTFLSGGERIALGLAFRLAMSLYLAGE-----ISLLIL----------DEPTPYL----------   94 (148)
T ss_dssp             SEEEEEEET-TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSS-----CSEEEE----------ESCSCTT----------
T ss_pred             ceEEEeccc-cccCChhHCCHHHHHHHHHHhhhHHHHHHcCC-----CCEEEE----------ECCCccC----------
Confidence            566665432 23467889999999999999877762  2233     388888          7755555          


Q ss_pred             CCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhccee
Q psy834          596 PNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTIQ  660 (926)
Q Consensus       596 ~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v~  660 (926)
                                    |..  +...+       .+.|.++.....|=.+|+|+......+|+.+-+.
T Consensus        95 --------------D~~--~~~~l-------~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~  136 (148)
T 1f2t_B           95 --------------DEE--RRRKL-------ITIMERYLKKIPQVILVSHDEELKDAADHVIRIS  136 (148)
T ss_dssp             --------------CHH--HHHHH-------HHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             --------------CHH--HHHHH-------HHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence                          433  44445       5566666554455555699986555567665553

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.26  E-value=0.0067  Score=62.59  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhc---cccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWK---LVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN  607 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQK---cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~  607 (926)
                      +.+..||||||.+++||+.+++-+   .+|      ++..+          ||--+-|                      
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p------~~lll----------DEpt~~L----------------------  316 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRL------DAFFI----------DEGFSSL----------------------  316 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTC------CEEEE----------ESCCTTS----------------------
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCC------CEEEE----------eCCCccC----------------------
Confidence            678899999999999999888533   355      78888          7755544                      


Q ss_pred             CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        |..  ....+       .+.|.++.....|=.+|+|+.-.+..+|+.+-+
T Consensus       317 --D~~--~~~~~-------~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l  357 (365)
T 3qf7_A          317 --DTE--NKEKI-------ASVLKELERLNKVIVFITHDREFSEAFDRKLRI  357 (365)
T ss_dssp             --CHH--HHHHH-------HHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEE
T ss_pred             --CHH--HHHHH-------HHHHHHHHhCCCEEEEEecchHHHHhCCEEEEE
Confidence              433  44444       566778877666766779998777667765433

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.63  E-value=0.0076  Score=58.70  Aligned_cols=75  Identities=19%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||+++|||..|+.   +|      +|..+          ||--+-+                        |.
T Consensus       136 ~~~~LSgGq~qrv~lAral~~---~p------~lllL----------DEPts~L------------------------D~  172 (243)
T 1mv5_A          136 RGVKISGGQRQRLAIARAFLR---NP------KILML----------DEATASL------------------------DS  172 (243)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCSCSS------------------------CS
T ss_pred             CcCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------CH
Confidence            457899999999999999987   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +..++       .+.|.++. ..-|=.+|+|+.-....+|+.+-+
T Consensus       173 ~--~~~~i-------~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l  210 (243)
T 1mv5_A          173 E--SESMV-------QKALDSLM-KGRTTLVIAHRLSTIVDADKIYFI  210 (243)
T ss_dssp             S--SCCHH-------HHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEE
Confidence            4  44555       55677776 445666669998776677876644

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.28  E-value=0.0059  Score=60.42  Aligned_cols=75  Identities=19%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ....||||||+++|||..|+.   +|      +|..+          ||--+-+                        |.
T Consensus       152 ~~~~LSgGqkqRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  188 (260)
T 2ghi_A          152 KGMKLSGGERQRIAIARCLLK---DP------KIVIF----------DEATSSL------------------------DS  188 (260)
T ss_dssp             SSBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCCCTT------------------------CH
T ss_pred             CcCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence            356999999999999999986   67      88888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       .+.|.++.. ..|-.+|+|++-....+|+.+-+
T Consensus       189 ~--~~~~i-------~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l  226 (260)
T 2ghi_A          189 K--TEYLF-------QKAVEDLRK-NRTLIIIAHRLSTISSAESIILL  226 (260)
T ss_dssp             H--HHHHH-------HHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEE
Confidence            4  44555       567777754 45666669998877677776544

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.24  E-value=0.004  Score=60.62  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=54.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||+++|||-.|+.   +|      +|..+          ||--+-|                        |
T Consensus       141 ~~~~~LSgGq~QRv~iAral~~---~p------~llll----------DEPts~L------------------------D  177 (235)
T 3tif_A          141 HKPNQLSGGQQQRVAIARALAN---NP------PIILA----------DQPTWAL------------------------D  177 (235)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------C
Confidence            3567999999999999999986   67      78888          7765555                        5


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~  657 (926)
                      ..  +...+       .+.|.++... .-|=.+|||+.-....+|+.+
T Consensus       178 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~  216 (235)
T 3tif_A          178 SK--TGEKI-------MQLLKKLNEEDGKTVVVVTHDINVARFGERII  216 (235)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHHCCEEEEECSCHHHHTTSSEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE
Confidence            44  55555       6677887654 456566699987554556554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.10  E-value=0.0077  Score=59.18  Aligned_cols=75  Identities=13%  Similarity=0.058  Sum_probs=54.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||+++|||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       142 ~~~~LSgGq~qRv~iAraL~~---~p------~lllL----------DEPts~L------------------------D~  178 (247)
T 2ff7_A          142 QGAGLSGGQRQRIAIARALVN---NP------KILIF----------DEATSAL------------------------DY  178 (247)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTT---CC------SEEEE----------CCCCSCC------------------------CH
T ss_pred             CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            457999999999999999986   66      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       .+.|.++. ...|=.+|+|+.-....+|+.+-+
T Consensus       179 ~--~~~~i-------~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l  216 (247)
T 2ff7_A          179 E--SEHVI-------MRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVM  216 (247)
T ss_dssp             H--HHHHH-------HHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEE
Confidence            4  55555       56777774 345555669998877677776544

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.89  E-value=0.094  Score=54.94  Aligned_cols=39  Identities=18%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             cccc-cCchhHHHHHHHHHHHHHhc------cccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQ-HLSGGERTLAALAMIFTIWK------LVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       531 QsIQ-QLSGGEKSLVALALIFAIQK------cDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      +.+. .||||||..++||+.+|-..      .+|      ||..+          ||+.+-|
T Consensus       260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p------~iLLL----------DEp~s~L  305 (359)
T 2o5v_A          260 FPASDYASRGEGRTVALALRRAELELLREKFGED------PVLLL----------DDFTAEL  305 (359)
T ss_dssp             EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSC------CEEEE----------CCGGGCC
T ss_pred             cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCC------CEEEE----------eCccccC
Confidence            4555 89999999999999999311      345      89999          8888888

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.80  E-value=0.012  Score=57.47  Aligned_cols=76  Identities=16%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||+++|||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       136 ~~~~LSgGq~qrv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  172 (240)
T 1ji0_A          136 LGGTLSGGEQQMLAIGRALMS---RP------KLLMM----------DEPSLGL------------------------AP  172 (240)
T ss_dssp             BSSSSCHHHHHHHHHHHHHTT---CC------SEEEE----------ECTTTTC------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCCcccC------------------------CH
Confidence            456899999999999998875   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhH-Hhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTR-SRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~-sr~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+|+|+.-.. .-+|+.+-+
T Consensus       173 ~--~~~~l-------~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l  212 (240)
T 1ji0_A          173 I--LVSEV-------FEVIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            4  55555       567778765555656669998544 446776544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.75  E-value=0.011  Score=59.09  Aligned_cols=76  Identities=22%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||+++|||..|+.   +|      +|..+          ||-.+-|                        |.
T Consensus       153 ~~~~LSgGq~QRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  189 (271)
T 2ixe_A          153 TGNQLSGGQRQAVALARALIR---KP------RLLIL----------DNATSAL------------------------DA  189 (271)
T ss_dssp             GGTTSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred             CcCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------CH
Confidence            467899999999999999886   66      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|+.-....+|+.+-+
T Consensus       190 ~--~~~~i-------~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l  229 (271)
T 2ixe_A          190 G--NQLRV-------QRLLYESPEWASRTVLLITQQLSLAERAHHILFL  229 (271)
T ss_dssp             H--HHHHH-------HHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence            4  44555       5667777543 44555569998776667776544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.70  E-value=0.0075  Score=58.21  Aligned_cols=74  Identities=19%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||..|+.   +|      +|..+          ||--+-+                        |.
T Consensus       137 ~~~~LSgGq~qrv~laral~~---~p------~lllL----------DEPt~~L------------------------D~  173 (224)
T 2pcj_A          137 KPYELSGGEQQRVAIARALAN---EP------ILLFA----------DEPTGNL------------------------DS  173 (224)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCCCC------------------------CH
Confidence            456999999999999998875   66      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~  657 (926)
                      .  +...+       .+.|.++....-|=.+|+|+.-...-+|+.+
T Consensus       174 ~--~~~~~-------~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~  210 (224)
T 2pcj_A          174 A--NTKRV-------MDIFLKINEGGTSIVMVTHERELAELTHRTL  210 (224)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHTTSSEEE
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEcCCHHHHHhCCEEE
Confidence            4  44555       5678888766455555599865543345543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.63  E-value=0.0087  Score=58.64  Aligned_cols=75  Identities=8%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             ccc-CchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQH-LSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       533 IQQ-LSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      +.. ||||||+++|||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       140 ~~~~LSgGqkQrv~iAraL~~---~p------~lllL----------DEPts~L------------------------D~  176 (250)
T 2d2e_A          140 LNEGFSGGEKKRNEILQLLVL---EP------TYAVL----------DETDSGL------------------------DI  176 (250)
T ss_dssp             TTCC----HHHHHHHHHHHHH---CC------SEEEE----------ECGGGTT------------------------CH
T ss_pred             cccCCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCCcCC------------------------CH
Confidence            446 99999999999999986   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh--hhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV--QSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~--~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+|+|+.-...++  |+.+-+
T Consensus       177 ~--~~~~l-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l  217 (250)
T 2d2e_A          177 D--ALKVV-------ARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM  217 (250)
T ss_dssp             H--HHHHH-------HHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence            4  55555       566777765545656669997766663  665543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.50  E-value=0.011  Score=58.61  Aligned_cols=76  Identities=13%  Similarity=-0.033  Sum_probs=54.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||++++||..|+.   +|      +|..+          ||--+-+                        |.
T Consensus       143 ~~~~LSgGq~qRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  179 (256)
T 1vpl_A          143 RVSTYSKGMVRKLLIARALMV---NP------RLAIL----------DEPTSGL------------------------DV  179 (256)
T ss_dssp             BGGGCCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccc------------------------CH
Confidence            467999999999999998886   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+|+|..-...+ +|+.+-+
T Consensus       180 ~--~~~~l-------~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l  219 (256)
T 1vpl_A          180 L--NAREV-------RKILKQASQEGLTILVSSHNMLEVEFLCDRIALI  219 (256)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence            4  45555       56778887655555556999877666 5765543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.42  E-value=0.01  Score=58.84  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=54.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||+++|||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       135 ~~~~LSgGq~qRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  171 (266)
T 2yz2_A          135 VPFFLSGGEKRRVAIASVIVH---EP------DILIL----------DEPLVGL------------------------DR  171 (266)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------cCccccC------------------------CH
Confidence            347899999999999999887   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++.....|=.+|+|+.-...+ +|+.+-+
T Consensus       172 ~--~~~~l-------~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l  211 (266)
T 2yz2_A          172 E--GKTDL-------LRIVEKWKTLGKTVILISHDIETVINHVDRVVVL  211 (266)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4  45555       56677876554555556999877665 5765543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.31  E-value=0.017  Score=59.36  Aligned_cols=74  Identities=23%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||+++|||-.|+-   +|      +|..+          ||--+-+                        |..
T Consensus       188 g~~LSGGqrQRvaiARAL~~---~p------~iLlL----------DEPts~L------------------------D~~  224 (306)
T 3nh6_A          188 GLKLSGGEKQRVAIARTILK---AP------GIILL----------DEATSAL------------------------DTS  224 (306)
T ss_dssp             SBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCSSCC------------------------CHH
T ss_pred             cCCCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------CHH
Confidence            45899999999999998876   66      88888          7654444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-.++       .+.|.++.. ..|-.+|+|..-+...+|+.+-+
T Consensus       225 --~~~~i-------~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl  261 (306)
T 3nh6_A          225 --NERAI-------QASLAKVCA-NRTTIVVAHRLSTVVNADQILVI  261 (306)
T ss_dssp             --HHHHH-------HHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEE
T ss_pred             --HHHHH-------HHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEE
Confidence              33344       455666654 36778889999999889988755

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.29  E-value=0.022  Score=56.32  Aligned_cols=76  Identities=21%  Similarity=0.177  Sum_probs=54.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||..|+.   +|      +|..+          ||--+-+                        |.
T Consensus       125 ~~~~LSgGq~qrv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  161 (253)
T 2nq2_C          125 EFTSLSGGQRQLILIARAIAS---EC------KLILL----------DEPTSAL------------------------DL  161 (253)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHT---TC------SEEEE----------SSSSTTS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            467999999999999999987   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|+.-...+ +|+.+-+
T Consensus       162 ~--~~~~l-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l  202 (253)
T 2nq2_C          162 A--NQDIV-------LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL  202 (253)
T ss_dssp             H--HHHHH-------HHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            4  55555       5677777665 4565556999776544 5765543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.26  E-value=0.019  Score=56.91  Aligned_cols=76  Identities=12%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||..|+.   +|      +|..+          ||--+-|                        |.
T Consensus       150 ~~~~LSgGq~qRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  186 (262)
T 1b0u_A          150 YPVHLSGGQQQRVSIARALAM---EP------DVLLF----------DEPTSAL------------------------DP  186 (262)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCCCccC------------------------CH
Confidence            457899999999999999986   67      78888          7755444                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .++|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus       187 ~--~~~~~-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (262)
T 1b0u_A          187 E--LVGEV-------LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  226 (262)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  44555       56788887664565566999766554 5665433

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.24  E-value=0.018  Score=57.25  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=52.1

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      .||||||+++|||..|+.   +|      +|..+          ||-.+-|                        |..  
T Consensus       164 ~LSgGq~QRv~iAraL~~---~p------~lLlL----------DEPts~L------------------------D~~--  198 (267)
T 2zu0_C          164 GFSGGEKKRNDILQMAVL---EP------ELCIL----------DESDSGL------------------------DID--  198 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTC------------------------CHH--
T ss_pred             CCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCCCCC------------------------CHH--
Confidence            599999999999999986   77      78888          7755555                        544  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh--hhhhcce
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR--VQSSLTI  659 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr--~~~~~~v  659 (926)
                      +...+       .+.|.++.....|=.+|+|+.-...+  +|+.+-+
T Consensus       199 ~~~~l-------~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l  238 (267)
T 2zu0_C          199 ALKVV-------ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL  238 (267)
T ss_dssp             HHHHH-------HHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred             HHHHH-------HHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence            55555       55677776554555555998766655  4776544

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.23  E-value=0.022  Score=61.83  Aligned_cols=74  Identities=20%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||+++|||-.|+-   +|      ||..+          ||--+-+                        |..
T Consensus       478 ~~~LSgGq~qr~~iAral~~---~p------~illl----------DEpts~L------------------------D~~  514 (582)
T 3b5x_A          478 GTSLSGGQRQRVAIARALLR---DA------PVLIL----------DEATSAL------------------------DTE  514 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CHH
Confidence            46899999999999988865   66      89999          7755555                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-..+       .+.|.++.. ..|-.+|+|+.-+...+|+.+-+
T Consensus       515 --~~~~i-------~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l  551 (582)
T 3b5x_A          515 --SERAI-------QAALDELQK-NKTVLVIAHRLSTIEQADEILVV  551 (582)
T ss_pred             --HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEE
Confidence              33444       556677654 56777779999988888887654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.22  E-value=0.011  Score=57.37  Aligned_cols=69  Identities=9%  Similarity=0.015  Sum_probs=49.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+..||||||++++||..|+.   +|      +|..+          ||-.+-+                        |.
T Consensus       130 ~~~~LSgGqkqrv~laraL~~---~p------~lllL----------DEPts~L------------------------D~  166 (214)
T 1sgw_A          130 KLGELSQGTIRRVQLASTLLV---NA------EIYVL----------DDPVVAI------------------------DE  166 (214)
T ss_dssp             BGGGSCHHHHHHHHHHHHTTS---CC------SEEEE----------ESTTTTS------------------------CT
T ss_pred             ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCCcCC------------------------CH
Confidence            467999999999999998875   66      88899          7766666                        54


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR  652 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr  652 (926)
                      .  +...+       .+.|.++.....|=.+|+|++-...+
T Consensus       167 ~--~~~~l-------~~~l~~~~~~g~tiiivtHd~~~~~~  198 (214)
T 1sgw_A          167 D--SKHKV-------LKSILEILKEKGIVIISSREELSYCD  198 (214)
T ss_dssp             T--THHHH-------HHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            4  55666       56677776544455566998765444

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.05  E-value=0.016  Score=56.98  Aligned_cols=77  Identities=12%  Similarity=0.022  Sum_probs=53.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||+++|||..|+.   +|      +|..+          ||--+-+                        |
T Consensus       149 ~~~~~LSgGqkQrv~iAraL~~---~p------~lllL----------DEPts~L------------------------D  185 (257)
T 1g6h_A          149 RKAGELSGGQMKLVEIGRALMT---NP------KMIVM----------DEPIAGV------------------------A  185 (257)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred             CCchhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------C
Confidence            4567999999999999999885   67      78888          7755444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus       186 ~~--~~~~l-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (257)
T 1g6h_A          186 PG--LAHDI-------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  226 (257)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            44  44555       56788887665555556998765443 5665443

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.04  E-value=0.02  Score=57.27  Aligned_cols=76  Identities=13%  Similarity=0.056  Sum_probs=53.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||..|+.   +|      +|..+          ||--+-|                        |.
T Consensus       156 ~~~~LSgGqkQRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~  192 (263)
T 2olj_A          156 YPDSLSGGQAQRVAIARALAM---EP------KIMLF----------DEPTSAL------------------------DP  192 (263)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHC---CC------CEEEE----------eCCcccC------------------------CH
Confidence            457999999999999999886   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++....-|=.+|+|+.-...+ +|+.+-+
T Consensus       193 ~--~~~~~-------~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  232 (263)
T 2olj_A          193 E--MVGEV-------LSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM  232 (263)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            4  44455       56788887664455555999776655 5665443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.73  E-value=0.013  Score=59.02  Aligned_cols=77  Identities=13%  Similarity=0.020  Sum_probs=53.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||+++|||..|+.   +|      +|..+          ||--+-|                        |
T Consensus       139 ~~~~~LSgGqkQRv~iAraL~~---~P------~lLlL----------DEPts~L------------------------D  175 (275)
T 3gfo_A          139 KPTHCLSFGQKKRVAIAGVLVM---EP------KVLIL----------DEPTAGL------------------------D  175 (275)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred             CCcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------C
Confidence            3456899999999999999986   77      78888          6644444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhc-cCCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVS-SSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~-~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      ..  +...+       .++|.++. ...-|=.+|+|+.-...+ +|+.+-+
T Consensus       176 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l  217 (275)
T 3gfo_A          176 PM--GVSEI-------MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM  217 (275)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            44  44555       66788876 444565666999766655 6775433

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.58  E-value=0.033  Score=55.15  Aligned_cols=79  Identities=18%  Similarity=0.097  Sum_probs=53.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCc----eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP----LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN  607 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP----i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~  607 (926)
                      .+..||||||++++||..|+.   +|.   -++    |..+          ||-.+-|                      
T Consensus       123 ~~~~LSgGq~qrv~lAraL~~---~p~---~~~~~~~lllL----------DEPts~L----------------------  164 (249)
T 2qi9_C          123 STNQLSGGEWQRVRLAAVVLQ---ITP---QANPAGQLLLL----------DEPMNSL----------------------  164 (249)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHH---HCT---TTCTTCCEEEE----------SSTTTTC----------------------
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CCC---cCCCCCeEEEE----------ECCcccC----------------------
Confidence            567999999999999999987   550   011    7778          6655545                      


Q ss_pred             CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce
Q psy834          608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        |..  +...+       .+.|.++.....|=.+|+|+.-...+ .|+.+-+
T Consensus       165 --D~~--~~~~l-------~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l  206 (249)
T 2qi9_C          165 --DVA--QQSAL-------DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL  206 (249)
T ss_dssp             --CHH--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             --CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence              444  55555       56788887654565555999776544 5665543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=93.57  E-value=0.03  Score=61.77  Aligned_cols=78  Identities=22%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCc-eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP-LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP-i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      +.+..||||||++++||-.++.   +|     .| |..+          ||-.+=|                        
T Consensus       198 ~~~~~LSGGe~QRv~iArAL~~---~p-----~~~lLlL----------DEPtsgL------------------------  235 (670)
T 3ux8_A          198 RSAGTLSGGEAQRIRLATQIGS---RL-----TGVLYVL----------DEPSIGL------------------------  235 (670)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHT---CC-----CSCEEEE----------ECTTTTC------------------------
T ss_pred             CCcccCCHHHHHHHHHHHHHhh---CC-----CCCEEEE----------ECCccCC------------------------
Confidence            5678999999999999998876   66     43 7777          6644444                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |..  +...+       .++|.++.....|=.+|+|+.-.+..+|+.+-+
T Consensus       236 D~~--~~~~l-------~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l  276 (670)
T 3ux8_A          236 HQR--DNDRL-------IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI  276 (670)
T ss_dssp             CGG--GHHHH-------HHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEE
T ss_pred             CHH--HHHHH-------HHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEe
Confidence            444  56666       667888876667767779998877777776533

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=93.52  E-value=0.018  Score=63.55  Aligned_cols=79  Identities=15%  Similarity=0.061  Sum_probs=57.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||+++|||-.++..--+|      +|..+          ||-.+=|                        |
T Consensus       539 ~~~~~LSgG~~qrv~iAraL~~~p~~p------~llll----------DEPt~~L------------------------D  578 (670)
T 3ux8_A          539 QPATTLSGGEAQRVKLAAELHRRSNGR------TLYIL----------DEPTTGL------------------------H  578 (670)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHSCCCSC------EEEEE----------ESTTTTC------------------------C
T ss_pred             CCchhCCHHHHHHHHHHHHHhhCCCCC------cEEEE----------eCCCCCC------------------------C
Confidence            567899999999999999988633333      58888          6654444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT  658 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~  658 (926)
                      ..  +...+       .++|.++.....|=.+|+|+.-....+|+.+-
T Consensus       579 ~~--~~~~i-------~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~  617 (670)
T 3ux8_A          579 VD--DIARL-------LDVLHRLVDNGDTVLVIEHNLDVIKTADYIID  617 (670)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE
Confidence            44  45555       56788887766677777999887777777653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.46  E-value=0.028  Score=56.04  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             cccccCchhHHHHHHHHHHHHH-hcc--ccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTI-WKL--VVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN  607 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAI-QKc--DP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~  607 (926)
                      +.+.+||||||+++|||..|+. +-+  +|      +|..+          ||--+-|                      
T Consensus       137 ~~~~~LSgGq~QRv~iAraL~~~~~~~~~p------~lLll----------DEPts~L----------------------  178 (266)
T 4g1u_C          137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTP------RWLFL----------DEPTSAL----------------------  178 (266)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHHTCCSSCCC------EEEEE----------CCCCSSC----------------------
T ss_pred             CCcccCCHHHHHHHHHHHHHhcccccCCCC------CEEEE----------eCccccC----------------------
Confidence            3456899999999999999985 322  44      56666          6644434                      


Q ss_pred             CCCCCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhcce
Q psy834          608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                        |..  +...+       .++|.++..... |=.+|+|+.-...+ +|+.+-+
T Consensus       179 --D~~--~~~~i-------~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl  221 (266)
T 4g1u_C          179 --DLY--HQQHT-------LRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL  221 (266)
T ss_dssp             --CHH--HHHHH-------HHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred             --CHH--HHHHH-------HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence              433  44455       667888876554 55566999776654 6776544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.46  E-value=0.022  Score=57.30  Aligned_cols=75  Identities=17%  Similarity=-0.031  Sum_probs=52.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||..|+.   +|      +|..+          ||--+-|                        |.
T Consensus       158 ~~~~LSgGqkqRv~lAraL~~---~p------~lLlL----------DEPts~L------------------------D~  194 (279)
T 2ihy_A          158 YIGYLSTGEKQRVMIARALMG---QP------QVLIL----------DEPAAGL------------------------DF  194 (279)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHhC---CC------CEEEE----------eCCcccc------------------------CH
Confidence            467899999999999999886   67      78888          7755555                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCce--eEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTR--SRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr--~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +...+       .+.|.++....-|=  .+|+|+.-...+ +|+.+-
T Consensus       195 ~--~~~~l-------~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~  235 (279)
T 2ihy_A          195 I--ARESL-------LSILDSLSDSYPTLAMIYVTHFIEEITANFSKILL  235 (279)
T ss_dssp             H--HHHHH-------HHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEE
Confidence            4  44555       56777776654565  566998765433 566543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.42  E-value=0.032  Score=61.06  Aligned_cols=74  Identities=15%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||+++|||-.|+-   +|      +|..+          ||--+-+                        |..
T Consensus       489 g~~LSgGq~Qrv~iAral~~---~p------~illl----------DEpts~L------------------------D~~  525 (598)
T 3qf4_B          489 GEDLSQGQRQLLAITRAFLA---NP------KILIL----------DEATSNV------------------------DTK  525 (598)
T ss_dssp             HTTSCHHHHHHHHHHHHHHT---CC------SEEEE----------CCCCTTC------------------------CHH
T ss_pred             CCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCccCC------------------------CHH
Confidence            35899999999999988774   66      89999          7755444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-...       .+.|.++. ...|-.+|+|+.-+...+|+.+-+
T Consensus       526 --~~~~i-------~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l  562 (598)
T 3qf4_B          526 --TEKSI-------QAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVL  562 (598)
T ss_dssp             --HHHHH-------HHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEE
T ss_pred             --HHHHH-------HHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEE
Confidence              33333       44566664 357888889999999889987755

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.41  E-value=0.034  Score=53.82  Aligned_cols=75  Identities=17%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||++++||..|+.   +|      +|..+          ||--+-+                        |..
T Consensus       128 ~~~LSgGqkqrv~lAral~~---~p------~lllL----------DEPts~L------------------------D~~  164 (229)
T 2pze_A          128 GITLSGGQRARISLARAVYK---DA------DLYLL----------DSPFGYL------------------------DVL  164 (229)
T ss_dssp             CTTSCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTS------------------------CHH
T ss_pred             CCcCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECcccCC------------------------CHH
Confidence            56999999999999998885   66      78888          7755555                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +..++.+.      ++.++.. ..|-.+|+|+.-....+|+.+-+
T Consensus       165 --~~~~i~~~------l~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l  202 (229)
T 2pze_A          165 --TEKEIFES------CVCKLMA-NKTRILVTSKMEHLKKADKILIL  202 (229)
T ss_dssp             --HHHHHHHH------CCCCCTT-TSEEEEECCCHHHHHHCSEEEEE
T ss_pred             --HHHHHHHH------HHHHhhC-CCEEEEEcCChHHHHhCCEEEEE
Confidence              44444211      1233322 34656669998776667776544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.37  E-value=0.029  Score=54.69  Aligned_cols=35  Identities=17%  Similarity=0.081  Sum_probs=28.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPT  585 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~  585 (926)
                      .+..||||||+++|||..|+.   +|      +|..+          ||--+-+
T Consensus       124 ~~~~LSgGqkqRv~lAraL~~---~p------~lllL----------DEPts~L  158 (237)
T 2cbz_A          124 KGVNLSGGQKQRVSLARAVYS---NA------DIYLF----------DDPLSAV  158 (237)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccc
Confidence            457999999999999999986   67      88888          7755555

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.35  E-value=0.025  Score=55.59  Aligned_cols=76  Identities=20%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||..|+.   +|      ++..+          ||--+-+                        |.
T Consensus       123 ~~~~LSgGqkqRv~lAral~~---~p------~lllL----------DEPts~L------------------------D~  159 (240)
T 2onk_A          123 KPARLSGGERQRVALARALVI---QP------RLLLL----------DEPLSAV------------------------DL  159 (240)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SSBEE----------ESTTSSC------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            346999999999999999886   67      78888          7644444                        44


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      .  +...+       .+.|.++... .-|=.+|+|+.-...+ .|+.+-+
T Consensus       160 ~--~~~~~-------~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l  200 (240)
T 2onk_A          160 K--TKGVL-------MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM  200 (240)
T ss_dssp             H--HHHHH-------HHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3  44455       5667777653 4565666999765444 5765443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.03  E-value=0.036  Score=55.38  Aligned_cols=74  Identities=11%  Similarity=0.022  Sum_probs=50.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||+++|||..|+.   +|      +|..+          ||-.+-+                        |
T Consensus       124 ~~~~~LSgGqkqRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D  160 (263)
T 2pjz_A          124 RKLYKLSAGQSVLVRTSLALAS---QP------EIVGL----------DEPFENV------------------------D  160 (263)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccc------------------------C
Confidence            3467999999999999999886   67      78888          7754444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHH-hhh-hhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRS-RVQ-SSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~s-r~~-~~~~v  659 (926)
                      ..  +...+       .+.|.++..   |=.+|+|+.-... -+| +.+-+
T Consensus       161 ~~--~~~~l-------~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l  199 (263)
T 2pjz_A          161 AA--RRHVI-------SRYIKEYGK---EGILVTHELDMLNLYKEYKAYFL  199 (263)
T ss_dssp             HH--HHHHH-------HHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEE
Confidence            44  44445       455666654   5555699976544 356 55433

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.87  E-value=0.034  Score=60.47  Aligned_cols=74  Identities=19%  Similarity=0.157  Sum_probs=54.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||+++|||-.|+-   +|      ||..+          ||--+-+                        |..
T Consensus       478 ~~~LSgGq~qrl~iAral~~---~p------~illl----------DEpts~L------------------------D~~  514 (582)
T 3b60_A          478 GVLLSGGQRQRIAIARALLR---DS------PILIL----------DEATSAL------------------------DTE  514 (582)
T ss_dssp             SCSSCHHHHHHHHHHHHHHH---CC------SEEEE----------ETTTSSC------------------------CHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECccccC------------------------CHH
Confidence            46899999999999998875   66      89999          7755555                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-...       .+.|.++.. ..|-.+|+|++-+...+|+.+-+
T Consensus       515 --~~~~i-------~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l  551 (582)
T 3b60_A          515 --SERAI-------QAALDELQK-NRTSLVIAHRLSTIEQADEIVVV  551 (582)
T ss_dssp             --HHHHH-------HHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEE
T ss_pred             --HHHHH-------HHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEE
Confidence              33344       456677654 56777779999888888886644

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.74  E-value=0.036  Score=60.65  Aligned_cols=74  Identities=12%  Similarity=0.074  Sum_probs=53.1

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||+++|||-.++-   +|      ||..+          ||--+-+                        |..
T Consensus       477 ~~~LSgGqrQrv~lARal~~---~p------~illl----------DEpts~L------------------------D~~  513 (587)
T 3qf4_A          477 GRNFSGGQKQRLSIARALVK---KP------KVLIL----------DDCTSSV------------------------DPI  513 (587)
T ss_dssp             SCSSCHHHHHHHHHHHHHHT---CC------SEEEE----------ESCCTTS------------------------CHH
T ss_pred             CCCcCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------CHH
Confidence            46899999999999987764   66      89999          7755444                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-.+.       .+.|.++. ...|-.+|+|+.-+...+|+.+-+
T Consensus       514 --~~~~i-------~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl  550 (587)
T 3qf4_A          514 --TEKRI-------LDGLKRYT-KGCTTFIITQKIPTALLADKILVL  550 (587)
T ss_dssp             --HHHHH-------HHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEE
T ss_pred             --HHHHH-------HHHHHHhC-CCCEEEEEecChHHHHhCCEEEEE
Confidence              33333       33455553 357888889999998888887755

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=92.28  E-value=0.032  Score=65.22  Aligned_cols=80  Identities=15%  Similarity=0.053  Sum_probs=59.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +....||||||++++||-.++-...+|      .|+.+          ||--.=|                        |
T Consensus       801 q~~~~LSGGErQRV~LAraL~~~p~~p------~LLIL----------DEPTsGL------------------------D  840 (916)
T 3pih_A          801 QPATTLSGGEAQRIKLASELRKRDTGR------TLYIL----------DEPTVGL------------------------H  840 (916)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHTSCCCSS------EEEEE----------ESTTTTC------------------------C
T ss_pred             CCccCCCHHHHHHHHHHHHHhhCCCCC------CEEEE----------ECCCCCC------------------------C
Confidence            567899999999999999887533333      68888          6643333                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      -+  +...+       .+.|.++.....|=.+|+|+.-.....|+.+-+
T Consensus       841 ~~--~~~~L-------~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivL  880 (916)
T 3pih_A          841 FE--DVRKL-------VEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDL  880 (916)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEe
Confidence            34  55566       667888877788877789999888888887644

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.21  E-value=0.049  Score=59.23  Aligned_cols=75  Identities=23%  Similarity=0.175  Sum_probs=54.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||+++|||-.++-   +|      +|..+          ||--+-+                        |.
T Consensus       474 ~g~~LSgGq~Qrv~lAral~~---~p------~illl----------DEpts~L------------------------D~  510 (578)
T 4a82_A          474 RGVKLSGGQKQRLSIARIFLN---NP------PILIL----------DEATSAL------------------------DL  510 (578)
T ss_dssp             GGTTSCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTC------------------------CH
T ss_pred             CCCcCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence            346899999999999988875   66      89999          7755555                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      .  +-..+       .+.|.++.. ..|-.+|+|+.-+...+|+.+-+
T Consensus       511 ~--~~~~i-------~~~l~~~~~-~~t~i~itH~l~~~~~~d~i~~l  548 (578)
T 4a82_A          511 E--SESII-------QEALDVLSK-DRTTLIVAHRLSTITHADKIVVI  548 (578)
T ss_dssp             H--HHHHH-------HHHHHHHTT-TSEEEEECSSGGGTTTCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHcCCEEEEE
Confidence            3  33344       445666644 46888889999998888887654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=91.94  E-value=0.07  Score=55.69  Aligned_cols=74  Identities=19%  Similarity=0.017  Sum_probs=49.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||++||||-.|+.   +|      +|..+          ||--+-|                        |.
T Consensus       137 ~~~~LSGGq~QRvalAraL~~---~P------~lLLL----------DEP~s~L------------------------D~  173 (353)
T 1oxx_K          137 FPRELSGAQQQRVALARALVK---DP------SLLLL----------DEPFSNL------------------------DA  173 (353)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------CG
T ss_pred             ChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCcccC------------------------CH
Confidence            356999999999999999887   77      78888          6643333                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  +-..+       .+.|.++... .-|=..|||+.-...+ .|+.+
T Consensus       174 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~  212 (353)
T 1oxx_K          174 R--MRDSA-------RALVKEVQSRLGVTLLVVSHDPADIFAIADRVG  212 (353)
T ss_dssp             G--GHHHH-------HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            3  33333       4556666543 4455556999765444 57654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.81  E-value=0.07  Score=54.12  Aligned_cols=75  Identities=17%  Similarity=0.025  Sum_probs=48.9

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      +..||||||++++||..|+.   +|      +|..+          ||--+-+                        |..
T Consensus       157 ~~~LSgGq~QRv~lAraL~~---~p------~lllL----------DEPts~L------------------------D~~  193 (290)
T 2bbs_A          157 GITLSGGQRARISLARAVYK---DA------DLYLL----------DSPFGYL------------------------DVL  193 (290)
T ss_dssp             -CCCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------CHH
T ss_pred             cCcCCHHHHHHHHHHHHHHC---CC------CEEEE----------ECCcccC------------------------CHH
Confidence            46899999999999999885   66      78888          7755555                        443


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +..++.+.      ++.++.. .-|=.+|+|+.-....+|+.+-+
T Consensus       194 --~~~~i~~~------ll~~~~~-~~tviivtHd~~~~~~~d~i~~l  231 (290)
T 2bbs_A          194 --TEKEIFES------CVCKLMA-NKTRILVTSKMEHLKKADKILIL  231 (290)
T ss_dssp             --HHHHHHHH------CCCCCTT-TSEEEEECCCHHHHHHSSEEEEE
T ss_pred             --HHHHHHHH------HHHHhhC-CCEEEEEecCHHHHHcCCEEEEE
Confidence              44444211      1223322 34555569998777777776543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=91.79  E-value=0.08  Score=62.03  Aligned_cols=78  Identities=18%  Similarity=0.097  Sum_probs=59.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCc-eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP-LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP-i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      +.+..||||||++++||-.++-   +|     .| ++.+          ||=.+-|                        
T Consensus       460 r~~~~LSGGe~QRv~LAraL~~---~p-----~~~lllL----------DEPT~gL------------------------  497 (916)
T 3pih_A          460 RSATTLSGGESQRIRLATQIGS---GL-----TGVIYVL----------DEPTIGL------------------------  497 (916)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHT---TC-----CSCEEEE----------ECTTTTC------------------------
T ss_pred             CCcccCCHHHHHHHHHHHHHhh---CC-----CCcEEEE----------ECCccCC------------------------
Confidence            5678999999999999988876   34     32 7777          6644444                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |..  +..+.       .+.|.++....+|=.+|+|+.-.+...|+.+-+
T Consensus       498 D~~--~~~~l-------~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~l  538 (916)
T 3pih_A          498 HPR--DTERL-------IKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDI  538 (916)
T ss_dssp             CGG--GHHHH-------HHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEE
T ss_pred             CHH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence            444  56666       667888888888888889999888888887654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.07  E-value=0.053  Score=57.49  Aligned_cols=75  Identities=13%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||++||||-.++.   +|      .|..+          ||--+-|                        |.
T Consensus       160 ~~~~LSGGqkQRVaIArAL~~---~P------~lLLl----------DEPTs~L------------------------D~  196 (366)
T 3tui_C          160 YPSNLSGGQKQRVAIARALAS---NP------KVLLC----------DQATSAL------------------------DP  196 (366)
T ss_dssp             CTTTSCHHHHHHHHHHHHTTT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCccC------------------------CH
Confidence            456999999999999998876   77      67788          6644444                        43


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +...+       .++|.++... .-|=.+|||..-...+ +|+.+-
T Consensus       197 ~--~~~~i-------~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v  236 (366)
T 3tui_C          197 A--TTRSI-------LELLKDINRRLGLTILLITHEMDVVKRICDCVAV  236 (366)
T ss_dssp             H--HHHHH-------HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            3  44445       6778888655 4565666999766555 677543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.90  E-value=0.061  Score=56.20  Aligned_cols=74  Identities=18%  Similarity=0.088  Sum_probs=48.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||+++|||-.|+.   +|      ++..+          ||--+-|                        |.
T Consensus       124 ~~~~LSgGq~QRvalAraL~~---~P------~lLLL----------DEP~s~L------------------------D~  160 (348)
T 3d31_A          124 NPLTLSGGEQQRVALARALVT---NP------KILLL----------DEPLSAL------------------------DP  160 (348)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTS---CC------SEEEE----------ESSSTTS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence            456999999999999998886   67      78888          6644333                        32


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhh-HHhhhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTT-RSRVQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t-~sr~~~~~  657 (926)
                      .  +-..+       .+.|.++... .-|=..|||..-. +.-.|+.+
T Consensus       161 ~--~~~~l-------~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~  199 (348)
T 3d31_A          161 R--TQENA-------REMLSVLHKKNKLTVLHITHDQTEARIMADRIA  199 (348)
T ss_dssp             H--HHHHH-------HHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            2  33333       4567777554 3455555999764 44457654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.89  E-value=0.078  Score=55.80  Aligned_cols=75  Identities=16%  Similarity=0.037  Sum_probs=48.7

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||++||||-.|+.   +|      ++..+          ||--+-|                        |.
T Consensus       136 ~~~~LSGGq~QRvalArAL~~---~P------~lLLL----------DEP~s~L------------------------D~  172 (372)
T 1g29_1          136 KPRELSGGQRQRVALGRAIVR---KP------QVFLM----------DEPLSNL------------------------DA  172 (372)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ECTTTTS------------------------CH
T ss_pred             CcccCCHHHHHHHHHHHHHhc---CC------CEEEE----------CCCCccC------------------------CH
Confidence            346999999999999999987   77      67777          6633333                        32


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~  658 (926)
                      .  +-..+       .+.|.++... .-|=..|||..-...+ .|+.+-
T Consensus       173 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  212 (372)
T 1g29_1          173 K--LRVRM-------RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV  212 (372)
T ss_dssp             H--HHHHH-------HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence            2  22333       4456666544 3455556999765444 566543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.55  E-value=0.08  Score=55.67  Aligned_cols=74  Identities=16%  Similarity=0.032  Sum_probs=48.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||++||||-.|+.   +|      +|..+          ||--+-|                        |.
T Consensus       142 ~~~~LSGGq~QRvalArAL~~---~P------~lLLL----------DEP~s~L------------------------D~  178 (355)
T 1z47_A          142 FPHELSGGQQQRVALARALAP---RP------QVLLF----------DEPFAAI------------------------DT  178 (355)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTCCS------------------------SH
T ss_pred             CcccCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCcccC------------------------CH
Confidence            456999999999999999887   77      67777          6633333                        32


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      .  +-..+       .+.|.++... .-|=..|||......+ .|+.+
T Consensus       179 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~  217 (355)
T 1z47_A          179 Q--IRREL-------RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVL  217 (355)
T ss_dssp             H--HHHHH-------HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE
Confidence            2  22333       4556666554 3455556999766544 56654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=90.20  E-value=0.093  Score=55.18  Aligned_cols=28  Identities=25%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      .+.+||||||++||||-.|+.   +|      ++..+
T Consensus       130 ~~~~LSgGq~QRvalArAL~~---~P------~lLLL  157 (359)
T 2yyz_A          130 KPTQLSGGQQQRVALARALVK---QP------KVLLF  157 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence            356999999999999998886   77      77888

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=89.48  E-value=0.08  Score=55.70  Aligned_cols=75  Identities=13%  Similarity=-0.002  Sum_probs=48.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      .+.+||||||++||||-.|+.   +|      ++..+          ||--+-|                        |.
T Consensus       130 ~~~~LSGGq~QRvalArAL~~---~P------~lLLL----------DEP~s~L------------------------D~  166 (362)
T 2it1_A          130 YPWQLSGGQQQRVAIARALVK---EP------EVLLL----------DEPLSNL------------------------DA  166 (362)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESGGGGS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECccccC------------------------CH
Confidence            446999999999999999886   77      67777          6633333                        32


Q ss_pred             CCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhH-Hhhhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTR-SRVQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~-sr~~~~~~  658 (926)
                      .  +-..+       .+.|.++... .-|=..|||..-.. .-.|+.+-
T Consensus       167 ~--~r~~l-------~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  206 (362)
T 2it1_A          167 L--LRLEV-------RAELKRLQKELGITTVYVTHDQAEALAMADRIAV  206 (362)
T ss_dssp             H--HHHHH-------HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence            2  22333       4566666554 44555569997654 44576543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=89.45  E-value=0.16  Score=60.22  Aligned_cols=79  Identities=22%  Similarity=0.081  Sum_probs=59.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||-.++.   +|    -..|+++          ||=.+=|                        |
T Consensus       500 R~~~tLSGGEkQRV~LA~aL~~---~~----~~~llIL----------DEPTagL------------------------d  538 (972)
T 2r6f_A          500 RSAGTLSGGEAQRIRLATQIGS---RL----TGVLYVL----------DEPSIGL------------------------H  538 (972)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHTT---CC----CSCEEEE----------ECTTTTC------------------------C
T ss_pred             CccccCCHHHHHHHHHHHHHhh---CC----CCCEEEE----------eCcccCC------------------------C
Confidence            4667999999999999999885   32    0148888          7755555                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      ..  ...++       -+.|..+....+|=.+|+|..-.+..+|+.+-+
T Consensus       539 p~--~~~~L-------~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~L  578 (972)
T 2r6f_A          539 QR--DNDRL-------IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI  578 (972)
T ss_dssp             GG--GHHHH-------HHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence            33  55666       566788888889888889999998888887654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=89.29  E-value=0.09  Score=55.51  Aligned_cols=29  Identities=24%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      +.+.+||||||++||||-.|+.   +|      ++..+
T Consensus       137 r~~~~LSGGq~QRvalArAL~~---~P------~lLLL  165 (372)
T 1v43_A          137 RYPAQLSGGQRQRVAVARAIVV---EP------DVLLM  165 (372)
T ss_dssp             SCTTTCCSSCHHHHHHHHHHTT---CC------SEEEE
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            3457999999999999998886   77      67888

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.26  E-value=0.15  Score=56.83  Aligned_cols=77  Identities=13%  Similarity=0.007  Sum_probs=53.3

Q ss_pred             cccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          529 SYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNP  608 (926)
Q Consensus       529 r~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~  608 (926)
                      ..+.+.+||||||+++|||-.|+.   +|      .|..+          ||-.+-|                       
T Consensus       222 ~~~~~~~LSGGekQRvaIAraL~~---~P------~lLlL----------DEPTs~L-----------------------  259 (607)
T 3bk7_A          222 LDRELHQLSGGELQRVAIAAALLR---KA------HFYFF----------DEPSSYL-----------------------  259 (607)
T ss_dssp             GGSBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ECTTTTC-----------------------
T ss_pred             hCCChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC-----------------------
Confidence            346788999999999999999885   67      78888          7755555                       


Q ss_pred             CCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhh-hhhc
Q psy834          609 NSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRV-QSSL  657 (926)
Q Consensus       609 ~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~-~~~~  657 (926)
                       |..  +...+       .+.|.++....-|=.+|+|..-...++ |+.+
T Consensus       260 -D~~--~~~~l-------~~~L~~l~~~g~tvIivsHdl~~~~~~adri~  299 (607)
T 3bk7_A          260 -DIR--QRLKV-------ARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH  299 (607)
T ss_dssp             -CHH--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred             -CHH--HHHHH-------HHHHHHHHhcCCEEEEEecChHHHHhhCCEEE
Confidence             444  44444       556777766545555559987655553 6653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=88.43  E-value=0.18  Score=58.70  Aligned_cols=78  Identities=17%  Similarity=0.035  Sum_probs=58.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCC-ceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLR-PLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~a-Pi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      +.+..||||||++++||-.++.   +|     . -|+++          ||=.+-|                        
T Consensus       375 r~~~tLSGGe~QRV~LA~aL~~---~p-----~~~llIL----------DEPT~~L------------------------  412 (842)
T 2vf7_A          375 RSTPTLSPGELQRLRLATQLYS---NL-----FGVVYVL----------DEPSAGL------------------------  412 (842)
T ss_dssp             CBGGGSCHHHHHHHHHHHHTTT---CC-----CSCEEEE----------ECTTTTC------------------------
T ss_pred             CCcCcCCHHHHHHHHHHHHHhh---CC-----CCeEEEe----------eCccccC------------------------
Confidence            4567999999999999998885   44     2 38888          7755555                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |.+  .+.++       -+.|..+....+|=.+|+|+.-.+..+|+.+-+
T Consensus       413 d~~--~~~~L-------~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l  453 (842)
T 2vf7_A          413 HPA--DTEAL-------LSALENLKRGGNSLFVVEHDLDVIRRADWLVDV  453 (842)
T ss_dssp             CGG--GHHHH-------HHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred             CHH--HHHHH-------HHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence            444  45566       566778888888888889999888777776544

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=88.29  E-value=0.17  Score=53.89  Aligned_cols=29  Identities=21%  Similarity=0.174  Sum_probs=24.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      +.+.+||||||++||||-.++.   +|      .+..+
T Consensus       129 r~p~~LSGGqrQRVaiArAL~~---~P------~lLLL  157 (381)
T 3rlf_A          129 RKPKALSGGQRQRVAIGRTLVA---EP------SVFLL  157 (381)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHH---CC------SEEEE
T ss_pred             CChhHCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence            3457999999999999999986   77      67777

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=87.53  E-value=0.23  Score=54.26  Aligned_cols=75  Identities=19%  Similarity=0.060  Sum_probs=51.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||+++|||-.|+.   +|      .|..+          ||-.+-|                        |
T Consensus       154 ~~~~~LSgGekQRv~iAraL~~---~P------~lLlL----------DEPTs~L------------------------D  190 (538)
T 1yqt_A          154 REIQHLSGGELQRVAIAAALLR---NA------TFYFF----------DEPSSYL------------------------D  190 (538)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCcccC------------------------C
Confidence            4578999999999999998885   77      78888          7744444                        4


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      ..  +...+       .+.|.++....-|=.+|+|..--..+ +|+.+
T Consensus       191 ~~--~~~~l-------~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~  229 (538)
T 1yqt_A          191 IR--QRLNA-------ARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH  229 (538)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            33  44444       55677776654555555998665555 36654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=87.08  E-value=0.2  Score=52.91  Aligned_cols=29  Identities=31%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      +.+.+||||||++||||-.++.   +|      .+..+
T Consensus       134 r~~~~LSGGq~QRValArAL~~---~P------~lLLL  162 (359)
T 3fvq_A          134 RYPHELSGGQQQRAALARALAP---DP------ELILL  162 (359)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTT---CC------SEEEE
T ss_pred             CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE
Confidence            4567999999999999999886   77      67777

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=86.90  E-value=0.26  Score=59.13  Aligned_cols=74  Identities=15%  Similarity=0.105  Sum_probs=52.8

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      -..||||||+++|||=-+  +  +.     +||..+          ||.-+-+                        |-.
T Consensus       552 G~~LSGGQkQRiaiARAl--~--~~-----~~IliL----------DE~tSaL------------------------D~~  588 (1321)
T 4f4c_A          552 GTQLSGGQKQRIAIARAL--V--RN-----PKILLL----------DEATSAL------------------------DAE  588 (1321)
T ss_dssp             SCCCCHHHHHHHHHHHHH--T--TC-----CSEEEE----------ESTTTTS------------------------CTT
T ss_pred             CCCCCHHHHHHHHHHHHH--c--cC-----CCEEEE----------ecccccC------------------------CHH
Confidence            358999999999998643  3  34     589999          8866666                        433


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        + ++..      ++-|.++.. ..|..+|+|..-|...+|+.+-+
T Consensus       589 --t-e~~i------~~~l~~~~~-~~T~iiiaHrls~i~~aD~Iivl  625 (1321)
T 4f4c_A          589 --S-EGIV------QQALDKAAK-GRTTIIIAHRLSTIRNADLIISC  625 (1321)
T ss_dssp             --T-HHHH------HHHHHHHHT-TSEEEEECSCTTTTTTCSEEEEE
T ss_pred             --H-HHHH------HHHHHHHhC-CCEEEEEcccHHHHHhCCEEEEe
Confidence              2 3332      233455443 57999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=86.84  E-value=0.32  Score=54.32  Aligned_cols=76  Identities=14%  Similarity=-0.002  Sum_probs=51.5

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+.+||||||+++|||-.++.   +|      .|..+          ||-.+-|                        
T Consensus       216 ~~~~~~LSgGe~Qrv~iAraL~~---~p------~llll----------DEPts~L------------------------  252 (608)
T 3j16_B          216 KRDIEKLSGGELQRFAIGMSCVQ---EA------DVYMF----------DEPSSYL------------------------  252 (608)
T ss_dssp             GSCTTTCCHHHHHHHHHHHHHHS---CC------SEEEE----------ECTTTTC------------------------
T ss_pred             CCChHHCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECcccCC------------------------
Confidence            35667999999999999988875   67      68888          7754444                        


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      |..  ....+       .+.|.++.....|=.+|+|..-...+ .|+.+
T Consensus       253 D~~--~~~~l-------~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~  292 (608)
T 3j16_B          253 DVK--QRLNA-------AQIIRSLLAPTKYVICVEHDLSVLDYLSDFVC  292 (608)
T ss_dssp             CHH--HHHHH-------HHHHHGGGTTTCEEEEECSCHHHHHHHCSEEE
T ss_pred             CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence            333  33334       45677777766665555998765555 35543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=85.86  E-value=0.29  Score=54.51  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=52.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||..|+.   +|      .|..+          ||-.+=|                        |
T Consensus       467 ~~~~~LSGGe~QRv~iAraL~~---~p------~lLlL----------DEPt~~L------------------------D  503 (607)
T 3bk7_A          467 RNVEDLSGGELQRVAIAATLLR---DA------DIYLL----------DEPSAYL------------------------D  503 (607)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHTS---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCccCC------------------------C
Confidence            4567999999999999998875   55      78888          6633333                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .++|.++.. ..-|=.+|+|......+ .|+.+-+
T Consensus       504 ~~--~~~~l-------~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl  545 (607)
T 3bk7_A          504 VE--QRLAV-------SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF  545 (607)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            33  33333       456777753 35566677999877665 5776544

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=85.21  E-value=0.14  Score=59.56  Aligned_cols=81  Identities=25%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||++++||..++.....|      .|+.+          ||   ||-|-                     
T Consensus       725 ~~~~~~LSGGekQRv~LAraL~~~p~~p------~lLIL----------DE---PTsGL---------------------  764 (842)
T 2vf7_A          725 GQPATELSGGEAQRIKLATELRRSGRGG------TVYVL----------DE---PTTGL---------------------  764 (842)
T ss_dssp             TCCGGGCCHHHHHHHHHHHTTSSCCSSC------EEEEE----------EC---TTTTC---------------------
T ss_pred             cCCcccCCHHHHHHHHHHHHHHhCCCCC------CEEEE----------EC---CCCCC---------------------
Confidence            3567899999999999998776532234      68888          66   55221                     


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                      |-+  ....+       .++|.++.....|=.+|+|+.-.....|+.+-+
T Consensus       765 D~~--~~~~l-------~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L  805 (842)
T 2vf7_A          765 HPA--DVERL-------QRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDI  805 (842)
T ss_dssp             CHH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred             CHH--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEE
Confidence            333  55566       567888887778878889998777666765443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=85.04  E-value=0.47  Score=52.06  Aligned_cols=72  Identities=11%  Similarity=-0.047  Sum_probs=49.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||-.++.   +|      .|..+          ||-.+-|                        |
T Consensus       134 ~~~~~LSgGe~Qrv~iA~aL~~---~p------~illl----------DEPts~L------------------------D  170 (538)
T 3ozx_A          134 KDANILSGGGLQRLLVAASLLR---EA------DVYIF----------DQPSSYL------------------------D  170 (538)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------ECCcccC------------------------C
Confidence            5678999999999999988875   67      68888          6644444                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhh
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQS  655 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~  655 (926)
                      ..  ....+       .+.|.++.. ..|=.+|+|..--...+..
T Consensus       171 ~~--~~~~l-------~~~l~~l~~-g~tii~vsHdl~~~~~~~d  205 (538)
T 3ozx_A          171 VR--ERMNM-------AKAIRELLK-NKYVIVVDHDLIVLDYLTD  205 (538)
T ss_dssp             HH--HHHHH-------HHHHHHHCT-TSEEEEECSCHHHHHHHCS
T ss_pred             HH--HHHHH-------HHHHHHHhC-CCEEEEEEeChHHHHhhCC
Confidence            33  34444       566777765 4565555998766555443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=84.97  E-value=0.19  Score=59.55  Aligned_cols=80  Identities=19%  Similarity=0.118  Sum_probs=55.5

Q ss_pred             ccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          530 YVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPN  609 (926)
Q Consensus       530 ~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~  609 (926)
                      .+.+..||||||++++||..++.....|      .|+.+          ||   |+-|-                     
T Consensus       840 ~~~~~~LSGGekQRv~LAraL~~~p~~p------~lLIL----------DE---PTsGL---------------------  879 (972)
T 2r6f_A          840 GQPATTLSGGEAQRVKLAAELHRRSNGR------TLYIL----------DE---PTTGL---------------------  879 (972)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHHSSCCCSC------EEEEE----------EC---TTTTC---------------------
T ss_pred             cCchhhCCHHHHHHHHHHHHHhcCCCCC------CEEEE----------EC---CCCCC---------------------
Confidence            3577899999999999999887532334      68888          66   55221                     


Q ss_pred             CCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcc
Q psy834          610 SRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLT  658 (926)
Q Consensus       610 ~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~  658 (926)
                      |-.  +...+       .+.|.++.....|=.+|+|+.-.+...|+.+-
T Consensus       880 D~~--~~~~l-------~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv  919 (972)
T 2r6f_A          880 HVD--DIARL-------LDVLHRLVDNGDTVLVIEHNLDVIKTADYIID  919 (972)
T ss_dssp             CHH--HHHHH-------HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred             CHH--HHHHH-------HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence            333  45555       56677887777787777999877666666543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=84.63  E-value=0.32  Score=53.40  Aligned_cols=77  Identities=12%  Similarity=0.065  Sum_probs=51.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||++||||-.++.   +|      +|..+          ||-.+=|                        |
T Consensus       381 ~~~~~LSGGq~QRv~iAraL~~---~p------~lLlL----------DEPT~gL------------------------D  417 (538)
T 3ozx_A          381 SNVNDLSGGELQKLYIAATLAK---EA------DLYVL----------DQPSSYL------------------------D  417 (538)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHS---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHc---CC------CEEEE----------eCCccCC------------------------C
Confidence            4677999999999999999886   67      78888          6633333                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .++|.++... .-|=++|+|..-...+ +|+.+-+
T Consensus       418 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl  459 (538)
T 3ozx_A          418 VE--ERYIV-------AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF  459 (538)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            22  22233       4567777653 4455667999876665 5776543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=84.13  E-value=0.34  Score=54.15  Aligned_cols=77  Identities=17%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+.+||||||++||||..++.   +|      .|..+          ||-.+=|                        |
T Consensus       463 ~~~~~LSGGqkQRv~iAraL~~---~p------~lLlL----------DEPT~gL------------------------D  499 (608)
T 3j16_B          463 QEVQHLSGGELQRVAIVLALGI---PA------DIYLI----------DEPSAYL------------------------D  499 (608)
T ss_dssp             SBSSSCCHHHHHHHHHHHHTTS---CC------SEEEE----------CCTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------ECCCCCC------------------------C
Confidence            4667999999999999998876   66      78888          6633333                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .++|.++.. ..-|=.+|+|..-...+ .|+.+-+
T Consensus       500 ~~--~~~~i-------~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl  541 (608)
T 3j16_B          500 SE--QRIIC-------SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF  541 (608)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            22  22233       455666643 34566666999766655 5776543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=83.85  E-value=0.38  Score=57.52  Aligned_cols=74  Identities=15%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||+++|||=.+.-   +|      +|..+          ||--+-+                        |..
T Consensus       524 g~~LSgGq~QriaiARal~~---~p------~iliL----------DEpts~L------------------------D~~  560 (1284)
T 3g5u_A          524 GAQLSGGQKQRIAIARALVR---NP------KILLL----------DEATSAL------------------------DTE  560 (1284)
T ss_dssp             SCSSCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTCSS------------------------CHH
T ss_pred             CCccCHHHHHHHHHHHHHhc---CC------CEEEE----------ECCCCCC------------------------CHH
Confidence            45899999999999988764   66      89999          7755555                        332


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                        +-..+       ++.|.+... ..|-.+|+|..-+...+|+.+-+
T Consensus       561 --~~~~i-------~~~l~~~~~-~~t~i~itH~l~~i~~~d~i~vl  597 (1284)
T 3g5u_A          561 --SEAVV-------QAALDKARE-GRTTIVIAHRLSTVRNADVIAGF  597 (1284)
T ss_dssp             --HHHHH-------HHHHHHHHT-TSEEEEECSCHHHHTTCSEEEEC
T ss_pred             --HHHHH-------HHHHHHHcC-CCEEEEEecCHHHHHcCCEEEEE
Confidence              22222       334545433 57888889999998888886643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=83.39  E-value=0.36  Score=52.74  Aligned_cols=77  Identities=14%  Similarity=0.052  Sum_probs=51.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||..|+.   +|      +|..+          ||--.=+                        |
T Consensus       397 ~~~~~LSGGe~qrv~lAraL~~---~p------~lLlL----------DEPt~~L------------------------D  433 (538)
T 1yqt_A          397 REVNELSGGELQRVAIAATLLR---DA------DIYLL----------DEPSAYL------------------------D  433 (538)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHTS---CC------SEEEE----------ECTTTTC------------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHHh---CC------CEEEE----------eCCcccC------------------------C
Confidence            5667999999999999998875   56      78888          5533333                        3


Q ss_pred             CCCCchhhhhhcccCCCCChhhhcc-CCCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSS-SPNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~-~~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +...+       .++|.++.. ..-|=.+|+|..-...+ +|+.+-+
T Consensus       434 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl  475 (538)
T 1yqt_A          434 VE--QRLAV-------SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF  475 (538)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            33  33344       556777753 34565666999776665 5776544

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=82.55  E-value=0.19  Score=53.40  Aligned_cols=26  Identities=23%  Similarity=0.111  Sum_probs=22.5

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      ..||||||+++|||-.++.   +|      +|..+
T Consensus       154 ~~LSGGqrQRvalARAL~~---~P------~lLLL  179 (390)
T 3gd7_A          154 CVLSHGHKQLMCLARSVLS---KA------KILLL  179 (390)
T ss_dssp             TTSCHHHHHHHHHHHHHHT---TC------CEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhc---CC------CEEEE
Confidence            5799999999999999986   67      67777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	926
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.86
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.31
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.11
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.07
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.64
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.27
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.4
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.28
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.24
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.89
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.61
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.85
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.49
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.6
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	89.93
d1g2912	240	Maltose transport protein MalK, N-terminal domain	89.86
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	89.59
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	89.3
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	89.01
d2awna2	232	Maltose transport protein MalK, N-terminal domain	88.73
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	87.6
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	86.54
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	86.1
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	86.01
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	81.97

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.2e-22  Score=195.98  Aligned_cols=192  Identities=25%  Similarity=0.389  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCC
Q psy834          398 KEQQRLAPLLDRLRRYEADLKALYKRRWILQKKFDKVKHTRRQKFENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPK  477 (926)
Q Consensus       398 KAIEQYEEfeEQyEELeaRrEELdKekeSIrELIEeLDKEKrEAFmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~  477 (926)
                      +..+++......+..+..+++++......+.+.+.+++......|...|+.++..|.++|++|......           
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~-----------  292 (427)
T d1w1wa_         224 PRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNS-----------  292 (427)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHTC----------------
T ss_pred             ccccchhhhccccccccccchhhhhhhhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------
Confidence            344566667777888888899999999999999999999999999999999999999999998621100           


Q ss_pred             cccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEEEEeCCCCcccccccCchhHHHHHHHHHHHHHhcccc
Q psy834          478 KKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNFSCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVV  557 (926)
Q Consensus       478 GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeISVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP  557 (926)
                         .              ....+|.+.|.+ .+.++++..||.|.|.++||....+..||||||++++|||+||++.+.|
T Consensus       293 ---~--------------~~~~~~~~~l~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~lSgGEk~~~~lal~lal~~~~~  354 (427)
T d1w1wa_         293 ---N--------------VELAGGNASLTI-EDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQP  354 (427)
T ss_dssp             -----------------------CEEEEC-------------CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSSC
T ss_pred             ---h--------------ccccCceeEEee-eccCcccccCceEEEEeccchhhhhhhhccchHHHHHHHHHHHHhcCCC
Confidence               0              111478999998 6678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCC
Q psy834          558 RVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSP  637 (926)
Q Consensus       558 ~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~  637 (926)
                           .||+.+          ||+|+-|                        |..  |..++       .++|.++++ .
T Consensus       355 -----~pilil----------DE~d~~L------------------------d~~--~~~~~-------~~~l~~~~~-~  385 (427)
T d1w1wa_         355 -----SPFFVL----------DEVDAAL------------------------DIT--NVQRI-------AAYIRRHRN-P  385 (427)
T ss_dssp             -----CSEEEE----------SSTTTTC------------------------CHH--HHHHH-------HHHHHHHCB-T
T ss_pred             -----CCEEEE----------eCCCCCC------------------------CHH--HHHHH-------HHHHHHHhC-C
Confidence                 999999          9999999                        777  88898       778888754 5


Q ss_pred             CceeEe-ecChhhHHhhhhhccee-eecCCCC
Q psy834          638 NTRSRV-QSSPTTRSRVQSSLTIQ-SAEQGSP  667 (926)
Q Consensus       638 ~tr~~v-~~~~~t~sr~~~~~~v~-~aE~G~~  667 (926)
                      ++-|+| ||+|-+|..+|..++|+ +-+.|+-
T Consensus       386 ~~Q~I~iTH~~~~~~~ad~~~~V~~~~~~g~s  417 (427)
T d1w1wa_         386 DLQFIVISLKNTMFEKSDALVGVYRQQQENSS  417 (427)
T ss_dssp             TBEEEEECSCHHHHTTCSEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCCHHHHHhcccEEEEEEeCCCCeE
Confidence            677888 99999999999999998 4555543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=7.6e-13  Score=124.48  Aligned_cols=137  Identities=23%  Similarity=0.283  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhhcCCCCcccchhhhhhccccCcccccCCCceeeeeccCCCCCccccceEE
Q psy834          442 FENMYDFVNDNIDATYKVHLKSSACQVYLIVSGWPKKKENLVIVVQSNLFSPQALTQSFGHAFLDITGAEQEPYLAGMNF  521 (926)
Q Consensus       442 FmkTFKQVNenFsEIFKeLV~NsssPi~L~lSgwP~GkGNLvIv~qSnLFspsal~qgGGsAeLdLtEDeEDPFeSGVeI  521 (926)
                      +..+|+.++..+..++.+|.                                     .||.+.|.+..+..+.+..|+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~l~-------------------------------------~~~~~~L~~~~~~~~~l~~~i~~  205 (308)
T d1e69a_         163 PRGSYQRVNESFNRFISLLF-------------------------------------FGGEGRLNIVSEAKSILDAGFEI  205 (308)
T ss_dssp             ----CHHHHHHHHHHHHHHH-------------------------------------TSCEEEC--------------CC
T ss_pred             hcccccccchhhhhhhheec-------------------------------------CCceEEEEecccccchhhhhhhh
Confidence            45667888888888888874                                     37788887755566778889999


Q ss_pred             EEeCCCCcccccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          522 SCTPQGRSYVGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSR  601 (926)
Q Consensus       522 SVSPPGKr~QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~  601 (926)
                      .+.++||++..+.+||+|||++.+++++++++...+     .+++..          ||+++.|                
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~-----~~~~~i----------DEpe~~L----------------  254 (308)
T d1e69a_         206 SIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKP-----SPFYVL----------DEVDSPL----------------  254 (308)
T ss_dssp             EEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSC-----CSEEEE----------ESCCSSC----------------
T ss_pred             hhhccccccchhhhhhHHHhhHHHHHhhhhhhhhcc-----Cchhhh----------hhccccC----------------
Confidence            999999999999999999999999999999988887     788888          9999999                


Q ss_pred             CCCCCCCCCCCCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcceeeecCCC
Q psy834          602 ANPNPNPNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLTIQSAEQGS  666 (926)
Q Consensus       602 ~~~~~~~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~v~~aE~G~  666 (926)
                              +..  +..|+       .+.|.+++.  ++-++| ||+|..+..+|++++|+|. .|+
T Consensus       255 --------hp~--~~~~l-------~~~l~~~~~--~~QviitTHsp~~~~~~d~~~~v~~~-~g~  300 (308)
T d1e69a_         255 --------DDY--NAERF-------KRLLKENSK--HTQFIVITHNKIVMEAADLLHGVTMV-NGV  300 (308)
T ss_dssp             --------CHH--HHHHH-------HHHHHHHTT--TSEEEEECCCTTGGGGCSEEEEEEES-SSC
T ss_pred             --------CHH--HHHHH-------HHHHHHhcc--CCEEEEEECCHHHHHhcccEEEEEEe-CCE
Confidence                    444  66777       567888875  567888 9999999999999999985 553

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.27  E-value=0.0013  Score=63.32  Aligned_cols=81  Identities=20%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||+++|||=.|+-   +|      +|..+          ||--+.+                        |.. 
T Consensus       138 ~~LSGGqkQRv~iARal~~---~p------~ilil----------DEpts~L------------------------D~~-  173 (242)
T d1mv5a_         138 VKISGGQRQRLAIARAFLR---NP------KILML----------DEATASL------------------------DSE-  173 (242)
T ss_dssp             BCCCHHHHHHHHHHHHHHH---CC------SEEEE----------ECCSCSS------------------------CSS-
T ss_pred             CCCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCcccc------------------------CHH-
Confidence            4799999999999998875   77      89999          8876666                        443 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCC
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSP  667 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~  667 (926)
                       +-..+       .+.|.++.. ..|-.+|+|+.-+...+|+.+-+   ...|+|.|
T Consensus       174 -~~~~i-------~~~l~~l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~  221 (242)
T d1mv5a_         174 -SESMV-------QKALDSLMK-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKH  221 (242)
T ss_dssp             -SCCHH-------HHHHHHHHT-TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCH
T ss_pred             -HHHHH-------HHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCH
Confidence             33333       455777764 56777789999999889998765   45566654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.40  E-value=0.0021  Score=62.54  Aligned_cols=80  Identities=24%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             cCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          535 HLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRANP  614 (926)
Q Consensus       535 QLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  614 (926)
                      +||||||+++|||=.|+-   +|      +|..+          ||--+-+                        |..  
T Consensus       154 ~LSgGq~QRi~iARal~~---~p------~ilil----------DEpts~L------------------------D~~--  188 (255)
T d2hyda1         154 KLSGGQKQRLSIARIFLN---NP------PILIL----------DEATSAL------------------------DLE--  188 (255)
T ss_dssp             TSCHHHHHHHHHHHHHHH---CC------SEEEE----------ESTTTTC------------------------CHH--
T ss_pred             CcCHHHHHHHHHHHHHhc---CC------CEEEE----------eCccccC------------------------CHH--
Confidence            799999999999998864   66      89999          7766555                        433  


Q ss_pred             chhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCC
Q psy834          615 NLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSP  667 (926)
Q Consensus       615 N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~  667 (926)
                      +-..+       .+.|.++.. ..|-.+|||++-++..+|+.+-+   ..+|.|.|
T Consensus       189 t~~~i-------~~~l~~l~~-~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~  236 (255)
T d2hyda1         189 SESII-------QEALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTH  236 (255)
T ss_dssp             HHHHH-------HHHHHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECH
T ss_pred             HHHHH-------HHHHHHHhc-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence            22333       344555554 46878889999999999998765   44555554

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.28  E-value=0.0026  Score=61.39  Aligned_cols=82  Identities=20%  Similarity=0.176  Sum_probs=58.5

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||+++|||-.|+-   +|      +|..+          ||--+-+                        |-.
T Consensus       150 ~~~LSGGqkQRvaiARal~~---~p------~ilil----------DEpts~L------------------------D~~  186 (253)
T d3b60a1         150 GVLLSGGQRQRIAIARALLR---DS------PILIL----------DEATSAL------------------------DTE  186 (253)
T ss_dssp             SCSSCHHHHHHHHHHHHHHH---CC------SEEEE----------ETTTSSC------------------------CHH
T ss_pred             CCCcCHHHHHHHHHHHHHhc---CC------CEEEe----------ccccccC------------------------CHH
Confidence            35799999999999998875   66      89999          7765555                        333


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCC
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSP  667 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~  667 (926)
                        +-..+       .+.|.++.. ..|-.+|||+.-++..+|+.+-+   ..+|+|.|
T Consensus       187 --~~~~i-------~~~l~~l~~-~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~  234 (253)
T d3b60a1         187 --SERAI-------QAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH  234 (253)
T ss_dssp             --HHHHH-------HHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred             --HHHHH-------HHHHHHhcc-CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCH
Confidence              22333       445666654 45778889999999999987755   33556655

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.24  E-value=0.0026  Score=61.29  Aligned_cols=75  Identities=12%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||++||||-.+|.   +|      +|-.+          ||--+-|                        |-
T Consensus       142 ~p~~LSGGqkQRvaIAraL~~---~P------~lLll----------DEPTs~L------------------------D~  178 (230)
T d1l2ta_         142 KPNQLSGGQQQRVAIARALAN---NP------PIILA----------DQPTGAL------------------------DS  178 (230)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHhhhhc---CC------CEEEe----------cCCcccc------------------------CH
Confidence            346899999999999999985   88      77777          6644444                        33


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCCceeEe-ecChhhHHhhhhhcc
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPNTRSRV-QSSPTTRSRVQSSLT  658 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v-~~~~~t~sr~~~~~~  658 (926)
                      .  +-...       .++|.++....++-.++ ||+.-....+|+.+-
T Consensus       179 ~--~~~~i-------~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~  217 (230)
T d1l2ta_         179 K--TGEKI-------MQLLKKLNEEDGKTVVVVTHDINVARFGERIIY  217 (230)
T ss_dssp             H--HHHHH-------HHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEE
T ss_pred             H--HHHHH-------HHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEE
Confidence            3  33333       67788888776655554 999877666677543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0036  Score=60.37  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=51.8

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      .+||||||+++|||=.|+-   +|      +|..+          ||--+-+                        |-. 
T Consensus       150 ~~LSGGqkQRvaiARal~~---~p------~ilil----------DEpTs~L------------------------D~~-  185 (251)
T d1jj7a_         150 SQLSGGQRQAVALARALIR---KP------CVLIL----------DDATSAL------------------------DAN-  185 (251)
T ss_dssp             SSSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------CHH-
T ss_pred             ccCChhHceEEEEeecccc---CC------cEEEe----------cCcCccc------------------------Chh-
Confidence            5899999999999997764   67      89999          7755555                        322 


Q ss_pred             CchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       .+.|.++... ..|-.+|||+.-+...+|+.+=+
T Consensus       186 -~~~~i-------~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl  224 (251)
T d1jj7a_         186 -SQLQV-------EQLLYESPERYSRSVLLITQHLSLVEQADHILFL  224 (251)
T ss_dssp             -HHHHH-------HHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEE
T ss_pred             -hHHHH-------HHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence             21222       3445555543 45778889999988889987644

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0054  Score=58.98  Aligned_cols=73  Identities=14%  Similarity=0.085  Sum_probs=52.8

Q ss_pred             ccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          534 QHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRAN  613 (926)
Q Consensus       534 QQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  613 (926)
                      ..||||||+++|||=.|+-   +|      +|..+          ||.-+-+                        |-. 
T Consensus       138 ~~LSGGq~QRvalARal~~---~p------~ilil----------DEpts~L------------------------D~~-  173 (241)
T d2pmka1         138 AGLSGGQRQRIAIARALVN---NP------KILIF----------DEATSAL------------------------DYE-  173 (241)
T ss_dssp             TCCCHHHHHHHHHHHHHTT---CC------SEEEE----------CCCCSCC------------------------CHH-
T ss_pred             CccCHHHHHHHhhhhhhhc---cc------chhhh----------hCCcccc------------------------CHH-
Confidence            5899999999999987753   66      89999          8866666                        333 


Q ss_pred             CchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce
Q psy834          614 PNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI  659 (926)
Q Consensus       614 ~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v  659 (926)
                       +-..+       .+.|.++.. .-|-..|||+.-++..+|+.+-+
T Consensus       174 -~~~~i-------~~~l~~l~~-~~Tvi~itH~l~~~~~~D~i~vl  210 (241)
T d2pmka1         174 -SEHVI-------MRNMHKICK-GRTVIIIAHRLSTVKNADRIIVM  210 (241)
T ss_dssp             -HHHHH-------HHHHHHHHT-TSEEEEECSSGGGGTTSSEEEEE
T ss_pred             -HHHHH-------HHHHHHHhC-CCEEEEEECCHHHHHhCCEEEEE
Confidence             22222       345666654 45878889999999889988744

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.017  Score=56.41  Aligned_cols=83  Identities=18%  Similarity=0.020  Sum_probs=53.6

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ...||||||+++|||-.|+-   +|      +|..+          ||--+-+                        |-.
T Consensus       156 ~~~LSgGqkQRv~lARaL~~---~p------~illL----------DEPts~L------------------------D~~  192 (281)
T d1r0wa_         156 GVTLSGGQRARISLARAVYK---DA------DLYLL----------DSPFGYL------------------------DVF  192 (281)
T ss_dssp             CTTSCHHHHHHHHHHHHHHS---CC------SEEEE----------ESCCCSS------------------------CHH
T ss_pred             ccCCCHHHHHHHHHHHHHHh---Cc------cchhh----------cCccccC------------------------CHH
Confidence            34699999999999998885   66      89999          6644444                        221


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHhhhhhcce---eeecCCCC
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSRVQSSLTI---QSAEQGSP  667 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr~~~~~~v---~~aE~G~~  667 (926)
                        .-.+..      ...+.+.. ...|-.+|+|+.-....+|+.+=+   ...+.|.|
T Consensus       193 --~~~~i~------~~~~~~~~-~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~  241 (281)
T d1r0wa_         193 --TEEQVF------ESCVCKLM-ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF  241 (281)
T ss_dssp             --HHHHHH------HHCCCCCT-TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECH
T ss_pred             --HHHHHH------HHHHHHhh-CCCEEEEEechHHHHHhCCEEEEEECCEEEEECCH
Confidence              112221      11222222 345778889999888889987755   34556654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.49  E-value=0.01  Score=57.41  Aligned_cols=77  Identities=13%  Similarity=0.049  Sum_probs=53.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||++||||-.++.   +|      .|..+          ||--+-+                        |
T Consensus       132 ~~~~~LSGGq~QRvaiAraL~~---~P------~iLll----------DEPts~L------------------------D  168 (239)
T d1v43a3         132 RYPAQLSGGQRQRVAVARAIVV---EP------DVLLM----------DEPLSNL------------------------D  168 (239)
T ss_dssp             SCTTTCCSSCHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------C
T ss_pred             CChhhCCHHHHHHHHHHhhhcc---CC------Cceee----------cCCcccC------------------------C
Confidence            4567999999999999999986   88      77787          6644433                        2


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhh-hhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRV-QSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~-~~~~~v  659 (926)
                      -.  .-...       .++|.++....+ |=.+|||+.--..++ |+.+-+
T Consensus       169 ~~--~~~~i-------~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm  210 (239)
T d1v43a3         169 AK--LRVAM-------RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM  210 (239)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            22  22333       567888876644 444559999888775 776544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.60  E-value=0.029  Score=54.36  Aligned_cols=77  Identities=17%  Similarity=0.025  Sum_probs=50.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||++||||-.++.   +|      .|..+          ||--+-+                        |
T Consensus       136 ~~p~~LSGGqkQRvaiARaL~~---~P------~llll----------DEPt~~L------------------------D  172 (242)
T d1oxxk2         136 HFPRELSGAQQQRVALARALVK---DP------SLLLL----------DEPFSNL------------------------D  172 (242)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTS------------------------C
T ss_pred             CChhhCCHHHHhHHHHHhHHhh---cc------cceee----------cCCccCC------------------------C
Confidence            4557899999999999999887   78      66777          6644444                        2


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeE-eecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSR-VQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~-v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  .....       .++|.++....++-.+ |||+.--..+ .|+.+-+
T Consensus       173 ~~--~~~~i-------~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm  214 (242)
T d1oxxk2         173 AR--MRDSA-------RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL  214 (242)
T ss_dssp             GG--GHHHH-------HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEE
Confidence            22  22333       5677888665444444 4999765555 5776543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.036  Score=53.49  Aligned_cols=86  Identities=17%  Similarity=0.123  Sum_probs=55.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||++||||-.++.   +|      .|..+          ||   ||-|-                     |
T Consensus       136 ~~~~~LSGG~~QRvaiAraL~~---~P------~lLll----------DE---Pt~~L---------------------D  172 (240)
T d3dhwc1         136 SYPSNLSGGQKQRVAIARALAS---NP------KVLLC----------DE---ATSAL---------------------D  172 (240)
T ss_dssp             SCBSCCCHHHHHHHHHHHHHHT---CC------SEEEE----------ES---GGGSS---------------------C
T ss_pred             CChhhCCHHHHHHHHHhhhhcc---CC------CeEEe----------cc---ccccC---------------------C
Confidence            4557999999999999999986   88      56666          55   55111                     2


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhh-hhhcce---eeecCCCCC
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRV-QSSLTI---QSAEQGSPN  668 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~-~~~~~v---~~aE~G~~~  668 (926)
                      -.  +-...       .++|.++....+ |=.+|||+.-...++ |+.+-+   .+.|.|.|.
T Consensus       173 ~~--~~~~i-------~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~  226 (240)
T d3dhwc1         173 PA--TTRSI-------LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS  226 (240)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred             HH--HhhHH-------HHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            11  22222       567888877644 444459998776664 876543   445556553

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=89.86  E-value=0.039  Score=53.24  Aligned_cols=76  Identities=16%  Similarity=0.077  Sum_probs=49.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSR  611 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (926)
                      ...+||||||+.||||--++.   +|      .|-.+          ||--+-+                        |-
T Consensus       136 ~p~~LSGGqkQRv~IAraL~~---~P------~iLll----------DEPt~~L------------------------D~  172 (240)
T d1g2912         136 KPRELSGGQRQRVALGRAIVR---KP------QVFLM----------DEPLSNL------------------------DA  172 (240)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ECTTTTS------------------------CH
T ss_pred             ChhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCccc------------------------CH
Confidence            346899999999999999988   78      66666          5533333                        22


Q ss_pred             CCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHhh-hhhcce
Q psy834          612 ANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSRV-QSSLTI  659 (926)
Q Consensus       612 a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr~-~~~~~v  659 (926)
                      .  +-...       .++|.++....+ |=.+|||..-...++ |+.+-+
T Consensus       173 ~--~~~~i-------~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm  213 (240)
T d1g2912         173 K--LRVRM-------RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM  213 (240)
T ss_dssp             H--HHHHH-------HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             H--HHHHH-------HHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            2  22223       456777766534 444449998777774 775533

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.59  E-value=0.072  Score=51.44  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             cccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          533 IQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNSRA  612 (926)
Q Consensus       533 IQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  612 (926)
                      ..+||||||++|+||-.++.   +|      .|..+          ||   ||-|-                     |-.
T Consensus       147 p~~LSGG~~QRv~iAraL~~---~P------~llil----------DE---PT~gL---------------------D~~  183 (258)
T d1b0ua_         147 PVHLSGGQQQRVSIARALAM---EP------DVLLF----------DE---PTSAL---------------------DPE  183 (258)
T ss_dssp             GGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ES---TTTTS---------------------CHH
T ss_pred             cccccHHHHHHHHHHHHHhc---CC------CEEEe----------cc---ccccC---------------------CHH
Confidence            35899999999999998885   88      67777          55   55111                     222


Q ss_pred             CCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhcce---eeecCCCC
Q psy834          613 NPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSLTI---QSAEQGSP  667 (926)
Q Consensus       613 ~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~~v---~~aE~G~~  667 (926)
                        +....       .++|.++....-|=.+|||..-...+ .||.+-+   ...|.|.|
T Consensus       184 --~~~~i-------~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~  233 (258)
T d1b0ua_         184 --LVGEV-------LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP  233 (258)
T ss_dssp             --HHHHH-------HHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             --HHHHH-------HHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence              22222       56788888876665556999766665 5776543   33445544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=0.087  Score=49.64  Aligned_cols=81  Identities=19%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCc---eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRP---LTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPN  607 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aP---i~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~  607 (926)
                      +....||||||++++||-.++  +..|   ...|   |..+          ||-.+-+                      
T Consensus       121 ~~~~~LSgG~~Qrv~iA~al~--~~~p---~~~p~p~llll----------DEPt~gL----------------------  163 (231)
T d1l7vc_         121 RSTNQLSGGEWQRVRLAAVVL--QITP---QANPAGQLLLL----------DEPMNSL----------------------  163 (231)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHH--HHCT---TTCTTCCEEEE----------SSCSTTC----------------------
T ss_pred             cChhhcCHHHHHHHHHHHHHH--hhCc---ccCCCCCEEEE----------cCCCCCC----------------------
Confidence            355689999999999997553  2222   1122   5556          5543333                      


Q ss_pred             CCCCCCCchhhhhhcccCCCCChhhhccCCCceeEeecChh-hHHhhhhhcce
Q psy834          608 PNSRANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPT-TRSRVQSSLTI  659 (926)
Q Consensus       608 ~~~~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~-t~sr~~~~~~v  659 (926)
                        |-.  +...+       .++|.++....-|=.+|+|+.- .+.-+|+.+-+
T Consensus       164 --D~~--~~~~i-------~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl  205 (231)
T d1l7vc_         164 --DVA--QQSAL-------DKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLL  205 (231)
T ss_dssp             --CHH--HHHHH-------HHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBE
T ss_pred             --CHH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence              322  33333       6778999887666555599864 45556777654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=89.01  E-value=0.1  Score=49.69  Aligned_cols=75  Identities=17%  Similarity=0.107  Sum_probs=51.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +....||||||++++||-.++.   +|      .|..+          ||   |+-|-                     |
T Consensus       135 ~~~~~LSGG~~Qrv~iAraL~~---~P------~lLll----------DE---Pt~gL---------------------D  171 (240)
T d1ji0a_         135 QLGGTLSGGEQQMLAIGRALMS---RP------KLLMM----------DE---PSLGL---------------------A  171 (240)
T ss_dssp             SBSSSSCHHHHHHHHHHHHHTT---CC------SEEEE----------EC---TTTTC---------------------C
T ss_pred             CchhhCCHHHHHHHHHHHHHHh---CC------CEeee----------cC---CCcCC---------------------C
Confidence            4567899999999999998886   78      67777          55   55222                     2


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhh-HHhhhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTT-RSRVQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t-~sr~~~~~  657 (926)
                      -.  ....+       .++|.++....-|=.+|+|+--. +.-.|+.+
T Consensus       172 ~~--~~~~i-------~~~i~~l~~~g~til~~tH~l~~~~~~~drv~  210 (240)
T d1ji0a_         172 PI--LVSEV-------FEVIQKINQEGTTILLVEQNALGALKVAHYGY  210 (240)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence            22  33344       67788888876666666998544 44456644

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.033  Score=53.52  Aligned_cols=77  Identities=14%  Similarity=0.112  Sum_probs=37.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||++||||-.++.   +|      .+..+          ||   |+-|-                     |
T Consensus       126 ~~~~~LSGGqkQRvaiAraL~~---~P------~illl----------DE---Pts~L---------------------D  162 (232)
T d2awna2         126 RKPKALSGGQRQRVAIGRTLVA---EP------SVFLL----------DE---PLSNL---------------------D  162 (232)
T ss_dssp             --------------CHHHHHHT---CC------SEEEE----------ES---TTTTS---------------------C
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---CC------CEEEE----------cC---CCCCC---------------------C
Confidence            3457899999999999999986   88      66677          55   55111                     1


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHhh-hhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSRV-QSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr~-~~~~~v  659 (926)
                      -.  .-...       .+.|.++... .-|=.+|||+.-...++ |+.+-+
T Consensus       163 ~~--~~~~i-------~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm  204 (232)
T d2awna2         163 AA--LRVQM-------RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL  204 (232)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            11  11122       4556776554 44555569998777774 776544

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.60  E-value=0.071  Score=49.15  Aligned_cols=28  Identities=18%  Similarity=0.125  Sum_probs=24.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHhccccCCCCCCceecC
Q psy834          532 GIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPP  568 (926)
Q Consensus       532 sIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~  568 (926)
                      .+.+||||||..++||..|+.   +|      +|..+
T Consensus       122 ~~~~LSgG~~qrv~ia~al~~---~~------~llll  149 (200)
T d1sgwa_         122 KLGELSQGTIRRVQLASTLLV---NA------EIYVL  149 (200)
T ss_dssp             BGGGSCHHHHHHHHHHHHTTS---CC------SEEEE
T ss_pred             ccCcCCCcHHHHHHHHHHHhc---CC------CEEEE
Confidence            456899999999999998875   66      89999

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=86.54  E-value=0.11  Score=49.54  Aligned_cols=75  Identities=12%  Similarity=-0.058  Sum_probs=52.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||..++||.-++.   +|      +|..+          ||--+=+                        |
T Consensus       129 ~~~~~lSgG~~qrv~iA~al~~---~p------~illL----------DEPt~gL------------------------D  165 (238)
T d1vpla_         129 DRVSTYSKGMVRKLLIARALMV---NP------RLAIL----------DEPTSGL------------------------D  165 (238)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHTT---CC------SEEEE----------ESTTTTC------------------------C
T ss_pred             hhhhhCCHHHHHHHHHHHHHhc---CC------CEEEe----------cCCCCCC------------------------C
Confidence            4577999999999999998886   77      77788          6643333                        2


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      -.  ....+       .++|.+++...-|=.+++|..-.... +|+.+
T Consensus       166 ~~--~~~~i-------~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~  204 (238)
T d1vpla_         166 VL--NAREV-------RKILKQASQEGLTILVSSHNMLEVEFLCDRIA  204 (238)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            22  22333       67888888876666666998776665 36643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.10  E-value=0.12  Score=49.30  Aligned_cols=75  Identities=15%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +.+..||||||++++||-.++.   +|      .+..+          ||   |+-|-                     |
T Consensus       146 ~~~~~LSgG~~Qrv~iAraL~~---~P------~llil----------DE---Pt~gL---------------------D  182 (254)
T d1g6ha_         146 RKAGELSGGQMKLVEIGRALMT---NP------KMIVM----------DE---PIAGV---------------------A  182 (254)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHHT---CC------SEEEE----------ES---TTTTC---------------------C
T ss_pred             CchhhCCcHHHHHHHHHHHHHh---Cc------Cchhh----------cC---CcccC---------------------C
Confidence            4678999999999999998875   78      67777          55   55222                     2


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCCceeEeecChhhHHh-hhhhc
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPNTRSRVQSSPTTRSR-VQSSL  657 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~tr~~v~~~~~t~sr-~~~~~  657 (926)
                      -.  ....+       .+.|.++....-|=.+|+|+--...+ +|+.+
T Consensus       183 ~~--~~~~i-------~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~  221 (254)
T d1g6ha_         183 PG--LAHDI-------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLY  221 (254)
T ss_dssp             HH--HHHHH-------HHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE
T ss_pred             HH--HHHHH-------HHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEE
Confidence            22  23333       56788887766565666887655444 46654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.01  E-value=0.089  Score=50.88  Aligned_cols=77  Identities=21%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +...+||||||++||||--++.   +|      .|..+          ||   |+-|-.|                    
T Consensus       122 ~~~~~LSGG~kQRvaiAral~~---~P------~illl----------DE---Pts~LD~--------------------  159 (240)
T d2onka1         122 RKPARLSGGERQRVALARALVI---QP------RLLLL----------DE---PLSAVDL--------------------  159 (240)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHTT---CC------SSBEE----------ES---TTSSCCH--------------------
T ss_pred             CChhhCCHHHHHHHHHHHHHhc---cC------CceEe----------cC---ccccCCH--------------------
Confidence            3456999999999999998887   77      45555          44   5522111                    


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccC-CCceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSS-PNTRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~-~~tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                          ...+.      ..+.|.++... .-|=.+|||+.-...+ .|+..-+
T Consensus       160 ----~~~~~------i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm  200 (240)
T d2onka1         160 ----KTKGV------LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM  200 (240)
T ss_dssp             ----HHHHH------HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             ----HHHHH------HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence                11111      24567777665 3454556999776665 5776544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=81.97  E-value=0.19  Score=48.17  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHhccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy834          531 VGIQHLSGGERTLAALAMIFTIWKLVVRVQQLRPLTPPPQSDPESGTQGELSPPTPGPNPHSRVNPNPNSRANPNPNPNS  610 (926)
Q Consensus       531 QsIQQLSGGEKSLVALALIFAIQKcDP~V~q~aPi~~~~~~~~~~~~~~Ev~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  610 (926)
                      +....||||||+++|||-.++.   +|      .|..+          ||   |+-|-                     |
T Consensus       123 ~~~~~LSGG~~QRvaiAraL~~---~P------~iLll----------DE---Pts~L---------------------D  159 (229)
T d3d31a2         123 RNPLTLSGGEQQRVALARALVT---NP------KILLL----------DE---PLSAL---------------------D  159 (229)
T ss_dssp             SCGGGSCHHHHHHHHHHHHTTS---CC------SEEEE----------ES---SSTTS---------------------C
T ss_pred             CChhhCCHHHhcchhhhhhhhc---cC------Cceee----------cC---CCcCC---------------------C
Confidence            3457899999999999987664   88      56666          44   66221                     1


Q ss_pred             CCCCchhhhhhcccCCCCChhhhccCCC-ceeEeecChhhHHh-hhhhcce
Q psy834          611 RANPNLSRRAQANNSAQNPLPEVSSSPN-TRSRVQSSPTTRSR-VQSSLTI  659 (926)
Q Consensus       611 ~a~~N~~R~~~~~~~~~~~l~e~~~~~~-tr~~v~~~~~t~sr-~~~~~~v  659 (926)
                      -.  +-..+       .++|.++..... |=..|||+.-...+ .|+.+-+
T Consensus       160 ~~--~~~~i-------~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm  201 (229)
T d3d31a2         160 PR--TQENA-------REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV  201 (229)
T ss_dssp             HH--HHHHH-------HHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HH--HHHHH-------HHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEE
Confidence            11  22222       567778766544 55666999987776 4776544