Psyllid ID: psy8368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MVPVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEFRMAEAL
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEcccccccccccEEEEEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHccccccEEEEEEccccccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEcccccccccccEEEEEEEEEEEcccEEEccccccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEccHccccccccccccccccEEEEEEEEEEEEcccccccccccEEEEEEcccccccccHHHHHHHHHHHHcccHEEcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHccccHcccccccccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvpvpygkeqiqdGKLMKKIKEkgfgenpvlgaHVQVHYMYYAEANELPIDITYLRKSiperfqlgssglipAFEYAILSMQkgeksdffASYELCfgalgcppripakADLLFEVHLINfsidpqvvrssadiesdfidsqveEPAFAKVLKRAQELgasgknafndkNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVcynnnkqykltCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCmkmfssssspsqhsnVVRIAYQEHEQVRPATLQEiqdteesnesdgydvgdfEKLMEIRMSEFRMAEAL
Flexible Loop (DISEMBL)
mvpvpygkeqiqdgkLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQelgasgknafndknivSAVRRYRDAVKLLINtqvtnyedqmQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEilkadlgnqqyQKETKARCMKMFssssspsqhSNVVRIAYQEHEQVRPATLqeiqdteesnesdgydvgDFEKLMEIRMSEFRMAEAL
Low Complexity Region (SEG)
MVPVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFssssspsqhsNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEFRMAEAL
Disordered region (IsUnstruct)
***********************GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQV**PAFAKVLKRA**L***GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD*VRA*I***I***************************************************************************************
Disordered Region (DISOPRED)
****PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIES***********FAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN**************YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL*******E**ARC***************************************************FEKLMEIRMSEFRM****
Disordered Region (DISEMBL)
MVPVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ************************NVVRIAYQEHEQVRPATLQE**********DGYDVGDFEKLMEIRMSEFRMAEAL
Disordered Region (DISPRO)
****PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHE******************SDGYDVGDFEKLMEIRMSEFRMAEA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEFRMAEAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q91XW8	327	Peptidyl-prolyl cis-trans	yes	N/A	0.766	0.871	0.288	3e-17
A6QQ71	326	Peptidyl-prolyl cis-trans	yes	N/A	0.758	0.865	0.269	4e-17
Q54Y27	366	FK506-binding protein 6 O	yes	N/A	0.693	0.704	0.253	2e-16
O75344	327	Peptidyl-prolyl cis-trans	yes	N/A	0.766	0.871	0.272	2e-13
P30416	458	Peptidyl-prolyl cis-trans	no	N/A	0.279	0.227	0.356	2e-10
P27124	458	Peptidyl-prolyl cis-trans	no	N/A	0.279	0.227	0.347	6e-10
Q02790	459	Peptidyl-prolyl cis-trans	no	N/A	0.279	0.226	0.356	6e-10
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.290	0.236	0.351	7e-10
Q9XSH5	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.290	0.236	0.351	8e-10
Q38931	551	Peptidyl-prolyl cis-trans	yes	N/A	0.282	0.190	0.367	9e-10

>sp|Q91XW8|FKBP6_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP6 OS=Mus musculus GN=Fkbp6 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 129/305 (42%), Gaps = 20/305 (6%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           D  ++K I  +G G+     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct: 35  DRGVLKDIIREGTGDTVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 93

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E  +LSM+KGE + F       +G LGCPP IP  A +LFE+ LI+F     +  + +
Sbjct: 94  GMELGLLSMRKGELARFLFKPAYAYGTLGCPPLIPPNATVLFEIELIDF-----LDSAES 148

Query: 133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
           D        Q E+    KVLK A      G   F       A  RY+ A+ LL     T 
Sbjct: 149 DKFCALSAEQQEQFPLQKVLKVAATEREFGNYLFRQNRFCDAKVRYKRALLLLHRRLAT- 207

Query: 193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH---FATKDVKLFFVWG 249
            E+Q  +E  +  V  NL   Y       L  D  + AL++         ++ K  F  G
Sbjct: 208 CEEQHLVEPAVLLVLLNLSFVY-------LKLDRPAMALRYGEQALLIDKRNAKALFRCG 260

Query: 250 KALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS 309
           +A + L E+  A   L  A+K   +     +I+ E+ K     + Y    +  C +MF+ 
Sbjct: 261 QACLLLTEYERARDFLVRAQK---EQPCNHDINNELKKLSSHYRDYVDREREMCHRMFAP 317

Query: 310 SSSPS 314
             S S
Sbjct: 318 CGSRS 322

PPIases accelerate the folding of proteins.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|A6QQ71|FKBP6_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP6 OS=Bos taurus GN=FKBP6 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 26/308 (8%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           D  ++K +  +G GE     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct: 34  DRGVLKDVIREGAGELVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 92

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF---SIDPQVVR 129
             E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F   +   +   
Sbjct: 93  GMELGLLSMRRGELARFLFKPTYAYGTLGCPPLIPPNTTVLFEIELLDFLDSAESDKFCA 152

Query: 130 SSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ 189
            SA+ +S F           KVLK A      G   F       A  RY+ A+ LL++ +
Sbjct: 153 LSAEQQSQF--------PLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRAL-LLLHRR 203

Query: 190 VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH---FATKDVKLFF 246
               E+Q  +E     V+ NL   Y       L  +  + AL++         K+ K  F
Sbjct: 204 TAPPEEQHLVETAKLLVFLNLSFTY-------LKLERPTMALRYGEQALIIDRKNAKALF 256

Query: 247 VWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKM 306
             G+A + + E+  A   L  A++   +     +I+ E+ K     + Y  + +  C +M
Sbjct: 257 RCGQACLLMTEYQKARDFLVRAQR---EQPFNHDINNELKKLASYYRDYMDKEREMCHRM 313

Query: 307 FSSSSSPS 314
           F+S  + S
Sbjct: 314 FASGDNGS 321

PPIases accelerate the folding of proteins.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q54Y27|FKBP6_DICDI FK506-binding protein 6 OS=Dictyostelium discoideum GN=fkbp6 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 136/284 (47%), Gaps = 26/284 (9%)

Query: 3   PVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
           P   G +   DG L+K+I ++G+GE P   + V VHY  Y  +N++  D +  R S P  
Sbjct: 94  PRKAGIQLDSDGCLIKRIIKEGYGEIPPPRSIVTVHYEGYL-SNQVLFDSSVQRNS-PFT 151

Query: 63  FQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           FQ+G+  +I A E +I +M+ G++++   +    FG LG PP IP    +++++ L+++ 
Sbjct: 152 FQMGTKSVIDAIELSISTMKVGQEAEIVTTQRYAFGKLGLPPFIPPNVSVIYKIKLLSYK 211

Query: 123 IDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAV 182
           +            +DF +       F  ++ +++E    G   F   N   ++R Y  ++
Sbjct: 212 LK----------SNDFTN-------FESLINKSKEEKEIGNQFFQKSNYKKSIRHYVKSI 254

Query: 183 KLLINTQVTNYEDQMQ---LEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239
            +L + + T   ++M+   L++ L  +Y NL  C    K  K       K L+   +   
Sbjct: 255 WILNDPEQTLGLNEMENKLLKDTLIILYLNLASCNIKLKDGKRGISNCEKILELGGNTTA 314

Query: 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEID 282
              K ++  G+A    +++ SA + L  A +L   D  +R E++
Sbjct: 315 ---KFYYRMGQAYSLNKQYDSAKRCLVQAIRLEPNDKLLRDELE 355

PPIases accelerate the folding of proteins by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|O75344|FKBP6_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP6 OS=Homo sapiens GN=FKBP6 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 125/305 (40%), Gaps = 20/305 (6%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           D  ++K +  +G G+     A V V Y  Y E  + P D  Y RK+ P   +LG    + 
Sbjct: 35  DRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITLW 93

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F     +  + +
Sbjct: 94  GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF-----LDCAES 148

Query: 133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
           D        Q ++    KVLK A      G   F       A  RY+ A+ LL       
Sbjct: 149 DKFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRALLLLRRRSAPP 208

Query: 193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH---FATKDVKLFFVWG 249
            E+Q  +E     V  NL   Y       L  D  + AL +         K+ K  F  G
Sbjct: 209 -EEQHLVEAAKLPVLLNLSFTY-------LKLDRPTIALCYGEQALIIDQKNAKALFRCG 260

Query: 250 KALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS 309
           +A + L E+  A   L  A+K   +     +I+ E+ K     + Y  + K    +MF+ 
Sbjct: 261 QACLLLTEYQKARDFLVRAQK---EQPFNHDINNELKKLASCYRDYVDKEKEMWHRMFAP 317

Query: 310 SSSPS 314
               S
Sbjct: 318 CGDGS 322

PPIases accelerate the folding of proteins.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 82

Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ A+ +M+ GE        E  +GA G PP+IP  A L+FEV L  F
Sbjct: 83  KGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEF 137

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 82

Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ A+ +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 83  KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 82

Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ AI +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 83  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F +G   +
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKL-SNGKKFDSSHDRNE-PFVFSIGKGQV 86

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +GA G  P+IP+ A L FEV L+NF
Sbjct: 87  IKAWDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF 137

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSH5|FKBP5_SAIBB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     AN    D ++ R   P  F +G   +
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKL-ANGKKFDSSHDRNE-PFVFSIGKGQV 86

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +GA G  P+IP+ A L FEV L++F
Sbjct: 87  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 137

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 12/117 (10%)

Query: 10  QIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKS----IPERFQ 64
           +IQ G L KK+ ++G G E P  G  V+VHY          +D T    S     P +F 
Sbjct: 35  EIQQG-LKKKLLKEGEGYETPENGDEVEVHYTGTL------LDGTKFDSSRDRATPFKFT 87

Query: 65  LGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           LG   +I  ++  I +M+KGE + F    EL +G  G PP IPA A L F+V L+ +
Sbjct: 88  LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKW 144

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
193610719	443	PREDICTED: peptidyl-prolyl cis-trans iso	0.720	0.604	0.355	1e-38
383850417	446	PREDICTED: peptidyl-prolyl cis-trans iso	0.747	0.623	0.314	8e-29
307197309	439	FK506-binding protein 6 [Harpegnathos sa	0.787	0.667	0.298	2e-27
340373397	484	PREDICTED: peptidyl-prolyl cis-trans iso	0.795	0.611	0.314	3e-27
345482248	452	PREDICTED: peptidyl-prolyl cis-trans iso	0.688	0.566	0.318	8e-27
345482250	479	PREDICTED: peptidyl-prolyl cis-trans iso	0.688	0.534	0.318	1e-26
221119074	466	PREDICTED: peptidyl-prolyl cis-trans iso	0.844	0.673	0.290	2e-26
242020209	375	FK506-binding protein, putative [Pedicul	0.706	0.701	0.311	2e-26
307185529	446	FK506-binding protein 6 [Camponotus flor	0.736	0.614	0.306	7e-26
350403229	447	PREDICTED: peptidyl-prolyl cis-trans iso	0.787	0.655	0.287	9e-26

>gi|193610719|ref|XP_001942690.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like isoform 4 [Acyrthosiphon pisum] gi|328704816|ref|XP_003242614.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like isoform 2 [Acyrthosiphon pisum] gi|328704818|ref|XP_003242615.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like isoform 3 [Acyrthosiphon pisum]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 151/281 (53%), Gaps = 13/281 (4%)

Query: 8   KEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGS 67
           K+   D K++K +   G G+       V +HY+ Y    + P D+TYL+   P+RF LG+
Sbjct: 82  KDLTGDRKVLKILLNSGIGQVVPENYVVLIHYIAYISNLQEPFDVTYLQGRRPKRFTLGN 141

Query: 68  SGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
             LIP  E  I +M  GE + F    EL +  LGCPPRIP  A +LF+VHL++F + P+ 
Sbjct: 142 GELIPGLEIGIKTMTTGENARFIIKPELAYRELGCPPRIPPNATVLFDVHLVSF-LSPES 200

Query: 128 VRSSADIESDFIDSQVEEP-AFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLI 186
           + +         D +  +P AF K + + Q+L   G   FN KNI  AV +Y  A++LL 
Sbjct: 201 IIT--------FDRENRDPDAFNKNIVQVQKLRLEGNEQFNLKNIEKAVFKYNRALELLH 252

Query: 187 NTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFF 246
                N  +++++ +YL ++Y NL VCY     +   C    +AL+++  F+    KLFF
Sbjct: 253 IVGCKNNNEEIEMMKYLNKIYTNLSVCYLKQCAFNKVCRMGIEALKYSERFSKYSAKLFF 312

Query: 247 VWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK 287
            WGKAL  L+++T A K L  A KL  ++     I +EI K
Sbjct: 313 NWGKALRLLKDFTEAKKKLDIASKLEHQNET---IAREIYK 350

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850417|ref|XP_003700792.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like [Megachile rotundata]

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 21/299 (7%)

Query: 11  IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           I +GK+MK IK+KG GE     A V V Y+ + E  + P D ++ R    + F L    L
Sbjct: 93  IGNGKVMKLIKQKGVGEPVPYDAQVTVKYIGHFEYRDEPFDSSFTRGGT-DTFCLNQGML 151

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRS 130
           IP  E AI SM+K E + F    +L +G  GC PRIP   ++LF VHL+++ +D   + S
Sbjct: 152 IPGLEIAIASMRKHEIAIFIIHPDLAYGKYGCAPRIPPNEEILFVVHLVDY-LDSGCIES 210

Query: 131 SADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV 190
              +      S  E+  FA V KR Q      ++ F  K I  A+R Y   ++ L    +
Sbjct: 211 FKSL------SLEEQKLFANVSKRVQAKFNIARDCFKKKKIRQAIREYSRGLEWLEEAAL 264

Query: 191 TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK 250
            N E++ + +  L R Y NL VCYN     +  C   ++           + K  F +G+
Sbjct: 265 KNQEEEDEAKRLLTRGYNNLAVCYNLENMPRRVCIACNRV-------PLPNSKTHFNFGR 317

Query: 251 ALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY---QKETKARCMKM 306
           AL+ + E+T A++ L+ A K+   ++   +I KEI   +    +Y   +K+   RC K+
Sbjct: 318 ALMKMGEYTRAMEKLQLALKMEPGNT---DITKEIKLVNAKRSKYDEMEKQLWRRCFKI 373

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197309|gb|EFN78601.1| FK506-binding protein 6 [Harpegnathos saltator]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 152/318 (47%), Gaps = 25/318 (7%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           D K+MK  K+KG GE     A V VHY+ Y E N+ P D +Y     P   +LG + +IP
Sbjct: 94  DEKVMKFTKQKGIGEVVPYNAQVTVHYIGYFEDNDEPFDSSYASGK-PRTLRLGQNIIIP 152

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E AI SM+K E + F+   +  + A+GC PRIP   ++ F VHL +F     +   SA
Sbjct: 153 GLEIAICSMRKHEVAVFWLHPDYAYRAIGCLPRIPPNVEVAFIVHLTDF-----LDNGSA 207

Query: 133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
           D   +   S  E+ +F  V++  +    + K+ F  + I +A+R Y+  V  L   ++ +
Sbjct: 208 DTYYNL--SIEEKQSFPNVIESVKHRLVTAKDHFRKQRIKNAIREYKKVVDCLEMVKLKD 265

Query: 193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
             ++ ++ E L R Y NL VCYN         D    A    +       K  + +GKAL
Sbjct: 266 SAEEQEMNELLSRTYTNLGVCYNK-------MDMPRNACMVCNRVPFPTAKTHYNFGKAL 318

Query: 253 IGLQEWTSAIKHLKTARKL---------AAKDSVRAEIDKEILKADLGNQQYQKETKARC 303
           + + E+  A+K L+ A KL         A +     EI+K + K    +++ Q +TK+  
Sbjct: 319 LCIAEYNEAMKELQKAYKLDPHNESIKKAIQQRQYLEIEKRLWKNCFKSEE-QNKTKSDE 377

Query: 304 MKMFSSSSSPSQHSNVVR 321
            +  +     S  +N+ R
Sbjct: 378 FRKAARDLCESVQNNITR 395

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340373397|ref|XP_003385228.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like [Amphimedon queenslandica]

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 28/324 (8%)

Query: 14  GKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPA 73
           G + KKI   G G +   GA V+VHY  Y E ++ P D T LR   P   +LG+  +I  
Sbjct: 102 GMVFKKIIRPGIGLSIPEGATVKVHYNGYLEYSDEPYDSTRLRNK-PLTIRLGTHQVIEG 160

Query: 74  FEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSAD 133
            E  + SM+K E S F       FG +GCPPRIP  A +LFEV +++F     V  S+AD
Sbjct: 161 LEVGVASMRKEEVSQFLVKSPYAFGDMGCPPRIPPAASILFEVEVLSF-----VDHSAAD 215

Query: 134 IESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY 193
              +  D    + +  +++  A     +G + F  K    A   Y  A++LL ++++ + 
Sbjct: 216 SYDELPDEDKAKVSLKEIVNVANAEREAGNDFFGQKMYGRATNHYIKAIRLLESSRLQDE 275

Query: 194 EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTC---DCASKALQFASHFATKDVKLFFVWGK 250
           E++   ++ L ++Y NL +   N KQ K  C   +C  + L+   +    +VK  F   K
Sbjct: 276 EEEELWKDSLMKLYINLSLT--NLKQRKPKCVITNC-RRVLELKDN----NVKATFTLAK 328

Query: 251 ALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS- 309
           A   L EW+ + K+L  A KL+  +   AEI KE+ K D   ++++   +    +MF S 
Sbjct: 329 AFSMLGEWSESRKYLVKAIKLSPNN---AEIRKEMAKLDSKIREFEVMERGLYSRMFQSD 385

Query: 310 ----SSSPSQHSNVVRIAYQEHEQ 329
               SS P   S++    YQE E+
Sbjct: 386 ANGASSDPETDSSL----YQEGEE 405

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|345482248|ref|XP_003424555.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like isoform 1 [Nasonia vitripennis]

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 139/270 (51%), Gaps = 14/270 (5%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           DG+++K IK++G GE     A   V Y+ Y E  + P D T   +       LG  G+I 
Sbjct: 92  DGEILKLIKKEGIGEVIPKDAQATVEYVGYFEFQDEPFDSTLFHREKRATLNLGKGGMIE 151

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E AI +M+K EK+ F     L +G LGC PRIP  +++LF++ LI+F     +   SA
Sbjct: 152 GLEIAISTMRKYEKAIFIIQPHLAYGKLGCLPRIPPDSEVLFKIELIDF-----LDNGSA 206

Query: 133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
           ++  +   S  ++  F+K  K  ++L  +G++ F  + I  A+R Y  A+  L + ++ N
Sbjct: 207 ELYDEL--SNEDKRKFSKTEKIIRDLMNTGQDRFKRQKIKQAIRDYNKAIDCLESARLEN 264

Query: 193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
            E++ ++   L R   NL VCYN   + KL C     A Q   +  T   K  F +GKAL
Sbjct: 265 DEEEKKMNTLLSRALTNLTVCYNKVNKPKLAC----SAFQRLPNEPTG--KAHFQYGKAL 318

Query: 253 IGLQEWTSAIKHLKTARKLAAK-DSVRAEI 281
             L ++  A++ L  A+ L  + + +R +I
Sbjct: 319 AQLGDYDKAMESLLKAQALVPECEEIRIQI 348

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482250|ref|XP_003424556.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like isoform 2 [Nasonia vitripennis]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 139/270 (51%), Gaps = 14/270 (5%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           DG+++K IK++G GE     A   V Y+ Y E  + P D T   +       LG  G+I 
Sbjct: 119 DGEILKLIKKEGIGEVIPKDAQATVEYVGYFEFQDEPFDSTLFHREKRATLNLGKGGMIE 178

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E AI +M+K EK+ F     L +G LGC PRIP  +++LF++ LI+F     +   SA
Sbjct: 179 GLEIAISTMRKYEKAIFIIQPHLAYGKLGCLPRIPPDSEVLFKIELIDF-----LDNGSA 233

Query: 133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
           ++  +   S  ++  F+K  K  ++L  +G++ F  + I  A+R Y  A+  L + ++ N
Sbjct: 234 ELYDEL--SNEDKRKFSKTEKIIRDLMNTGQDRFKRQKIKQAIRDYNKAIDCLESARLEN 291

Query: 193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
            E++ ++   L R   NL VCYN   + KL C     A Q   +  T   K  F +GKAL
Sbjct: 292 DEEEKKMNTLLSRALTNLTVCYNKVNKPKLAC----SAFQRLPNEPTG--KAHFQYGKAL 345

Query: 253 IGLQEWTSAIKHLKTARKLAAK-DSVRAEI 281
             L ++  A++ L  A+ L  + + +R +I
Sbjct: 346 AQLGDYDKAMESLLKAQALVPECEEIRIQI 375

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221119074|ref|XP_002167164.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP6-like [Hydra magnipapillata]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 174/334 (52%), Gaps = 20/334 (5%)

Query: 14  GKLMKKIKEKGFGENPVLGAH--VQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
           G ++KKI ++G G  PV+  +   +VHY  Y E ++ P D + LR     +F+LGS   I
Sbjct: 106 GLVLKKIMKQGSG--PVIPPNSLCRVHYNGYIEYSDEPFDSSRLRGK-QHQFKLGSGEGI 162

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSS 131
             ++ AI +M++GE S F     + FG +GCPPRIP+ A++LFE+ LI++     V + +
Sbjct: 163 EGWQIAISTMKRGEISKFLLHPTVAFGKMGCPPRIPSNAEVLFEIELISY-----VDQLA 217

Query: 132 ADIESDFI-DSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV 190
           +D+  +F  D Q++ P F +++K    +  +G  AF  K    A  +Y  A++LL NT +
Sbjct: 218 SDVFQNFSKDEQMKTP-FEEIIKVVDSIRLTGNEAFMVKQYNRASSKYSQALRLLENTNL 276

Query: 191 TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK 250
            N  ++ ++++   ++Y N+ +C     +Y+ +   A KAL   +    K+VK  +   +
Sbjct: 277 KNENEEKEMKKCALKLYLNISLCDLKQVRYRKSIKYARKALDIDN----KNVKALYRLAR 332

Query: 251 ALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS 310
           +L  L E+  + + +  A +L   D    E+ +E+L+ D   ++ QK  +    KM + +
Sbjct: 333 SLRCLGEYEESKRQISKAHRL---DPRNKEVMQELLELDEEMKKTQKIDQQLSRKMLNLT 389

Query: 311 SSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEES 344
                  +  +   Q    VR A L+  +D  ES
Sbjct: 390 PEKKPDKSPAKETQQMVHVVREA-LKGFKDNNES 422

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|242020209|ref|XP_002430548.1| FK506-binding protein, putative [Pediculus humanus corporis] gi|212515712|gb|EEB17810.1| FK506-binding protein, putative [Pediculus humanus corporis]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 143/273 (52%), Gaps = 10/273 (3%)

Query: 12  QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
           ++G + K+I   G G      ++V VHY  Y E ++LP D TY R   PE+F+L     I
Sbjct: 110 ENGFVKKQIIVCGIGAVVPENSYVTVHYNLYKEHHDLPFDSTYFRNK-PEKFRLDQVETI 168

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSS 131
               YA+ +M+K E S FF  +E  FG+LGCP RI  K D++ ++ L++++       ++
Sbjct: 169 LGLNYAVKTMKKSENSRFFIKWEYAFGSLGCPDRIEPKCDIVADITLVDYT--NIEFENT 226

Query: 132 ADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT 191
            ++  D  D+++ +  F K +  A+    +G + F  K + SA+  ++ AV +L +T V 
Sbjct: 227 GNLNGD--DNEIIKRDFIKNINEAKLHHKNGNDEFKCKKLGSAISSFKKAVMILNSTAVD 284

Query: 192 NYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKA 251
           N  ++  L E   +   NL +CYN   +Y+  C     A Q       K+VK ++ +GKA
Sbjct: 285 NKTEEKVLLEQKSKSLINLALCYNKIGKYEQAC----LACQDVLAIDHKNVKAYYHYGKA 340

Query: 252 LIGLQEWTSAIKHLKTARKLAAKD-SVRAEIDK 283
            + L  + +A K L  A KL   D ++ +E+ K
Sbjct: 341 SLNLSNFPAAKKWLMKAVKLKPGDPNINSELKK 373

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185529|gb|EFN71505.1| FK506-binding protein 6 [Camponotus floridanus]

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 140/297 (47%), Gaps = 23/297 (7%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           D K+MK +K+KG GE       +  HY+ Y E  + P D TY     P   +LG   +IP
Sbjct: 96  DQKVMKYVKQKGVGEVVPANGQITFHYIGYFEDRDEPFDSTY-SSGKPRTLRLGQGYIIP 154

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E  I +MQK E + F    +L + A GCPPRIP   +++F VHLI++  D      SA
Sbjct: 155 GLEIGISTMQKHEIAIFLIHPDLAYKAFGCPPRIPPNEEVVFVVHLIDYLDD-----GSA 209

Query: 133 DIESDFIDSQVEEP-AFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT 191
           D   +    Q EE  +F  + +    +  + K+     N   A+R Y+  +  L N Q+ 
Sbjct: 210 DTYQNL---QTEEKQSFRHIKEPMLHMFVAAKDTCRKLNFKRAIREYKRIIDCLENVQLK 266

Query: 192 NYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKA 251
           +  ++ ++ E L R Y NL +CYN     +L C    +             K  + +GKA
Sbjct: 267 DNSEEEEMNELLLRAYSNLGICYNKIDLPRLACMACGRV-------PIPTAKSHYNFGKA 319

Query: 252 LIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY---QKETKARCMK 305
           L+ L E+  A+K L+ A  L   +    EI K I + ++  +QY   +K+    C K
Sbjct: 320 LLNLGEYDEAMKKLRKAYTLEPSNE---EIGKVIQQTNVKQRQYLEIEKKLWKNCFK 373

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403229|ref|XP_003486736.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP5-like [Bombus impatiens]

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 156/316 (49%), Gaps = 23/316 (7%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           DGK+MK IK++G G      A V + Y+ + E ++ P D ++      E   LG   L+P
Sbjct: 95  DGKVMKLIKQEGVGTVIPCDAQVSIKYIAHFEFSDEPFDSSFAHGDT-ETLHLGEDSLLP 153

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
             E  I SM+K E + F    +L +G  GC PRIP   ++LF VHL ++ +D    +   
Sbjct: 154 GLEIGITSMKKHEIAMFLIHPDLAYGKYGCAPRIPPNEEVLFIVHLTDY-VDNGSAKKFQ 212

Query: 133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
            +      S  E   FA  +K  Q    + K+ F+ K I  A + Y  A++ L  T++ N
Sbjct: 213 SL------SLEERRQFATAVKGVQGKFNTAKDYFSKKKIKQATKEYGKALQWLEETELKN 266

Query: 193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
            +++ ++ + L R Y NL +CYN     +  C+  ++     S       K  F +G+AL
Sbjct: 267 QQEEDEVNKLLSRGYNNLAICYNIQNMPRNACNACNRVPIPTS-------KTHFNYGRAL 319

Query: 253 IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY---QKETKARCMKMFSS 309
           + + E++ A++ L+ A K+  K+    EI KEI  A+   ++Y   +K+    C+K+   
Sbjct: 320 LKMGEFSRAMEKLQLALKMEPKN---MEIVKEIKLANEKQRKYLDMEKKLWENCLKV--K 374

Query: 310 SSSPSQHSNVVRIAYQ 325
            +   + S   ++AY+
Sbjct: 375 ENKKKEPSAFEKVAYE 390

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
FB|FBgn0003401	455	shu "shutdown" [Drosophila mel	0.739	0.604	0.303	2.1e-24
ZFIN|ZDB-GENE-050302-4	343	fkbp6 "FK506 binding protein 6	0.771	0.836	0.281	2.6e-22
MGI|MGI:2137612	327	Fkbp6 "FK506 binding protein 6	0.747	0.850	0.288	8e-21
RGD|1308926	327	Fkbp6 "FK506 binding protein 6	0.747	0.850	0.285	1.4e-18
UNIPROTKB|F1RKB8	327	FKBP6 "Uncharacterized protein	0.755	0.859	0.277	9.8e-18
UNIPROTKB|A6QQ71	326	FKBP6 "Peptidyl-prolyl cis-tra	0.755	0.861	0.267	3.8e-17
UNIPROTKB|E2RPV2	327	FKBP6 "Uncharacterized protein	0.755	0.859	0.274	4e-17
UNIPROTKB|Q6P889	305	fkbp6 "FK506 binding protein 6	0.752	0.918	0.260	7.1e-17
UNIPROTKB|O75344	327	FKBP6 "Peptidyl-prolyl cis-tra	0.755	0.859	0.274	4.8e-16
UNIPROTKB|F1NDF7	264	FKBP6 "Uncharacterized protein	0.682	0.962	0.286	5.9e-16

FB|FBgn0003401 shu "shutdown" [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 2.1e-24, P = 2.1e-24
 Identities = 88/290 (30%), Positives = 136/290 (46%)

Query:    13 DGKLMKKIKEKGFGENPVLG--AHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
             D  + K+I   G  +   +   A V V Y  Y E    P D + LR S    F+ G   +
Sbjct:    82 DENIYKRITRTGHVDREAVPNKARVSVRYSGYWEGETAPFDSSLLRGS-KFVFETGQGTV 140

Query:    71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRS 130
             +   E A+ SM+  E+++F  SY+L FG LGCPPRI  KAD LF+V +I++S+    +  
Sbjct:   141 VEGLEVAVRSMRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYSL----IGD 196

Query:   131 SADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV 190
             +  I  D I  Q +   F  V  +A +L   GK++       SA   +  AV  L   ++
Sbjct:   197 AKGI--DAIP-QEDRDKFCVVYPKAVDLHLHGKDSVKLGRYQSAATAFERAVSSLNYCRM 253

Query:   191 TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK 250
              N E++ +  E L  + +NLM+ YN   + K  C    KAL+  +       K  F  G+
Sbjct:   254 ANDEEERKQTELLTTLNQNLMIVYNKMNKPKRAC-IMMKALRHLT-MGNPSCKALFQEGR 311

Query:   251 ALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK 300
             AL  L E+  A      A+   AK     EI  EI+  +    +Y++ ++
Sbjct:   312 ALAALGEYNLARNAYLQAQ---AKQPANKEISDEIISMNKRISKYEEASR 358

GO:0048477 "oogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0070725 "Yb body" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0034587 "piRNA metabolic process" evidence=IMP

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0016020 "membrane" evidence=IBA

ZFIN|ZDB-GENE-050302-4 fkbp6 "FK506 binding protein 6" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 86/306 (28%), Positives = 144/306 (47%)

Query:     5 PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
             P  ++ + DG ++K++  +G G    + A V +++  + E  + P + T   K  P   +
Sbjct:    33 PQMQDILGDGGVLKEVIHEGEGPPVSMHASVSINFSGFIEYTDAPFETTNHLK-YPRMMK 91

Query:    65 LGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSID 124
             LG    +   E  +L+M+KGE S F    +  +G LGCPP IP  A +L+EV +++F +D
Sbjct:    92 LGKDVTLYGLELGLLTMKKGEFSRFLFKPKYAYGDLGCPPHIPPCATVLYEVQVLDF-LD 150

Query:   125 PQVVRSSADIESDFIDSQVEEPAFA--KVLKRAQELGAS-GKNAFNDKNIVSAVRRYRDA 181
                   SA ++ DF+D  +EE   A   VL    +   S G   FN K    A  RY+ A
Sbjct:   151 ------SAQVD-DFMDLTLEEQNTAPLSVLLNVLDTQRSFGNLCFNKKRYEDARERYKQA 203

Query:   182 VKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241
             + LL N +  + E++  LEE       NL   Y   ++ +       KAL        ++
Sbjct:   204 MTLLQNREPEDAEEKKHLEEIKLPFLLNLSFTYLKLEKPQKALLYGQKALDINP----QN 259

Query:   242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKA 301
              K  F  G+A + ++++  A  +L  A+   AK     +I+  ++K     + Y  + K 
Sbjct:   260 TKALFRCGQACLEMKDYEKAQDYLTLAQ---AKKPFDPDINTLLIKLAHCYKAYLDKEKD 316

Query:   302 RCMKMF 307
              C KMF
Sbjct:   317 ICTKMF 322

GO:0006457 "protein folding" evidence=IEA

GO:0005528 "FK506 binding" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IBA

GO:0016020 "membrane" evidence=IBA

GO:0016853 "isomerase activity" evidence=IEA

MGI|MGI:2137612 Fkbp6 "FK506 binding protein 6" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 86/298 (28%), Positives = 130/298 (43%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K I  +G G+     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct:    35 DRGVLKDIIREGTGDTVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 93

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +LSM+KGE + F       +G LGCPP IP  A +LFE+ LI+F +D     + +
Sbjct:    94 GMELGLLSMRKGELARFLFKPAYAYGTLGCPPLIPPNATVLFEIELIDF-LDS----AES 148

Query:   133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
             D        Q E+    KVLK A      G   F       A  RY+ A+ LL++ ++  
Sbjct:   149 DKFCALSAEQQEQFPLQKVLKVAATEREFGNYLFRQNRFCDAKVRYKRAL-LLLHRRLAT 207

Query:   193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH---FATKDVKLFFVWG 249
              E+Q  +E  +  V  NL   Y       L  D  + AL++         ++ K  F  G
Sbjct:   208 CEEQHLVEPAVLLVLLNLSFVY-------LKLDRPAMALRYGEQALLIDKRNAKALFRCG 260

Query:   250 KALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
             +A + L E+  A   L  A+K   +     +I+ E+ K     + Y    +  C +MF
Sbjct:   261 QACLLLTEYERARDFLVRAQK---EQPCNHDINNELKKLSSHYRDYVDREREMCHRMF 315

GO:0000239 "pachytene" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005528 "FK506 binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=IEA

GO:0007283 "spermatogenesis" evidence=ISO

GO:0016020 "membrane" evidence=IBA;TAS

GO:0016853 "isomerase activity" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IDA

RGD|1308926 Fkbp6 "FK506 binding protein 6" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 85/298 (28%), Positives = 129/298 (43%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K I  +G G+     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct:    35 DRGVLKDIIREGAGDPVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 93

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +LSM++GE + F       +G LGCPP IP  A +LFE+ LI+F +D     + +
Sbjct:    94 GMELGLLSMRRGELARFLFKPTYAYGTLGCPPLIPPNATVLFEIELIDF-LDS----AES 148

Query:   133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
             D        Q E+    KVLK A      G   F       A  RY+ A+ LL++ ++  
Sbjct:   149 DKFCALSAEQQEQFPLQKVLKVAATEREFGNYLFRQNRFCDAKVRYKRAL-LLLHRRLAI 207

Query:   193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH---FATKDVKLFFVWG 249
              E+Q  +E     V  NL   Y       L  D  + AL++         ++ K  F  G
Sbjct:   208 CEEQHLVEPAELLVLLNLSFVY-------LKLDRPAMALRYGEQALLIDKRNAKALFRCG 260

Query:   250 KALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
             +A + L E+  A   L  A+K   +     +I+ E+ K     + Y    +  C +MF
Sbjct:   261 QACLLLTEYEQARDFLVRAQK---EQPCNHDINNELKKLSSHYRDYVDREREMCHRMF 315

GO:0000239 "pachytene" evidence=IMP

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IBA

GO:0005528 "FK506 binding" evidence=ISO;IBA

GO:0006457 "protein folding" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=ISO;IBA

UNIPROTKB|F1RKB8 FKBP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 9.8e-18, P = 9.8e-18
 Identities = 82/295 (27%), Positives = 125/295 (42%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K +  +G GE     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct:    35 DRGVLKDVIREGTGELVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 93

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F +D        
Sbjct:    94 GMELGLLSMRRGELARFLFKPTYAYGTLGCPPLIPPNTTVLFEIELLDF-LDSAESDKFC 152

Query:   133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
              +    +D Q + P   KVLK A      G   F       A  RY+ A+ LL      +
Sbjct:   153 ALS---VDQQDQFP-LEKVLKVAATEREFGNYLFRQNRFYDAKMRYKRALVLLHRRSAPS 208

Query:   193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
              E+Q  +E     V  NL   Y   ++  +      +AL        K+ K  F  G+A 
Sbjct:   209 -EEQHLVETAKLLVLLNLSFVYLKLERPAMALRYGEQALIIDQ----KNAKALFRCGQAC 263

Query:   253 IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
             + + E+  A   L  A+K   +     +I+ E+ K     + Y  + K  C +MF
Sbjct:   264 LLMTEYLKARDFLVRAQK---EQPFNHDINNELKKLASYYRDYVDKEKEMCHRMF 315

GO:0005528 "FK506 binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|A6QQ71 FKBP6 "Peptidyl-prolyl cis-trans isomerase FKBP6" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 3.8e-17, P = 3.8e-17
 Identities = 79/295 (26%), Positives = 128/295 (43%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K +  +G GE     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct:    34 DRGVLKDVIREGAGELVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 92

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F +D        
Sbjct:    93 GMELGLLSMRRGELARFLFKPTYAYGTLGCPPLIPPNTTVLFEIELLDF-LDSAESDKFC 151

Query:   133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
              + ++    Q + P   KVLK A      G   F       A  RY+ A+ LL++ +   
Sbjct:   152 ALSAE---QQSQFP-LQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRAL-LLLHRRTAP 206

Query:   193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
              E+Q  +E     V+ NL   Y   ++  +      +AL        K+ K  F  G+A 
Sbjct:   207 PEEQHLVETAKLLVFLNLSFTYLKLERPTMALRYGEQALIIDR----KNAKALFRCGQAC 262

Query:   253 IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
             + + E+  A   L  A++   +     +I+ E+ K     + Y  + +  C +MF
Sbjct:   263 LLMTEYQKARDFLVRAQR---EQPFNHDINNELKKLASYYRDYMDKEREMCHRMF 314

GO:0018208 "peptidyl-proline modification" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E2RPV2 FKBP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 4.0e-17, P = 4.0e-17
 Identities = 81/295 (27%), Positives = 126/295 (42%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K +  +G GE     A V V Y  Y E  + P D    RK+ P   +LG    + 
Sbjct:    35 DRGVLKDVIREGAGELVTPDASVLVKYSGYLEHMDKPFDSNCFRKT-PRLMKLGEDITLW 93

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F +D     + +
Sbjct:    94 GMELGLLSMRRGELARFLFKPTYAYGTLGCPPLIPPNTTVLFEIELLDF-LDS----AES 148

Query:   133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
             D        Q ++    KVLK A      G   F       A  RY+ A+ LL++ +   
Sbjct:   149 DKFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRAL-LLLHRRSAP 207

Query:   193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
              E+Q  +E     V  NL   Y   ++         +AL        K+ K  F  G+A 
Sbjct:   208 PEEQHLVEAAKLLVLLNLSFTYLRLERPTTALRYGEQALLIDQ----KNAKALFRCGQAC 263

Query:   253 IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
             + + E+  A   L  A+K   +     +I+ E+ K     + Y  + K  C +MF
Sbjct:   264 LFMTEYEKARDFLVRAQK---EQPFNHDINNELKKLASYYRDYTDKEKEMCHRMF 315

GO:0005528 "FK506 binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q6P889 fkbp6 "FK506 binding protein 6" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 219 (82.2 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 77/296 (26%), Positives = 133/296 (44%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K++   G G      A V + Y  Y E  + P D +  R+  P+  +LG    + 
Sbjct:    18 DRGVLKEVIRPGKGGKVPCDATVILKYSGYLEHADKPFDTSCYRRH-PKMMKLGEDITLS 76

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +L+MQ+GE S F  S +  +G LGC P IP  A +LFE+ L++F +D     + +
Sbjct:    77 GMEIGLLTMQRGELSRFLFSPKYAYGTLGCSPLIPPSATVLFEIELLDF-LDT----AES 131

Query:   133 DIESDFIDSQVEEP-AFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT 191
             D+    +  +V+   +  K++K A      G   F       A  RY+ A  +L + + +
Sbjct:   132 DLFCA-LSPEVQATFSLDKIIKIAGTEREFGNYLFKRNRFYDARDRYKRASSVL-SCKAS 189

Query:   192 NYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKA 251
               E++  LE     V  NL + Y   ++         KAL   +    ++ K  F  G+A
Sbjct:   190 CEEERKLLEAAQLFVALNLSLTYLKLERPSRALKWGEKALSIDN----RNTKALFRCGQA 245

Query:   252 LIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
              + ++E+  A  +L  A+ L   +    EI+ E+ +     Q Y  + +  C  MF
Sbjct:   246 CLEMREYDKARNYLLKAQWL---EPYNPEINNELKRLSSCYQDYMDKEREMCFLMF 298

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|O75344 FKBP6 "Peptidyl-prolyl cis-trans isomerase FKBP6" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 4.8e-16, P = 4.8e-16
 Identities = 81/295 (27%), Positives = 125/295 (42%)

Query:    13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
             D  ++K +  +G G+     A V V Y  Y E  + P D  Y RK+ P   +LG    + 
Sbjct:    35 DRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITLW 93

Query:    73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSA 132
               E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F +D     + +
Sbjct:    94 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF-LDC----AES 148

Query:   133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN 192
             D        Q ++    KVLK A      G   F       A  RY+ A+ LL+  +   
Sbjct:   149 DKFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRAL-LLLRRRSAP 207

Query:   193 YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL 252
              E+Q  +E     V  NL   Y    +  +      +AL        K+ K  F  G+A 
Sbjct:   208 PEEQHLVEAAKLPVLLNLSFTYLKLDRPTIALCYGEQALIIDQ----KNAKALFRCGQAC 263

Query:   253 IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
             + L E+  A   L  A+K   +     +I+ E+ K     + Y  + K    +MF
Sbjct:   264 LLLTEYQKARDFLVRAQK---EQPFNHDINNELKKLASCYRDYVDKEKEMWHRMF 315

GO:0006457 "protein folding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

UNIPROTKB|F1NDF7 FKBP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 5.9e-16, P = 5.9e-16
 Identities = 78/272 (28%), Positives = 117/272 (43%)

Query:    37 VHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELC 96
             V Y  Y E  E P   T   K +P   +LG    +   E  +L+M+KGE + F  S    
Sbjct:     1 VKYSGYLEHMEKPF-CTNCTKKLPRLMKLGKDITLGGLEIGVLTMKKGEVARFIFSPSYA 59

Query:    97 FGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFA--KVLKR 154
             +G  GC P IP  A +LFEV LI+F +D      SAD ++ F  +  ++  F   KVLK 
Sbjct:    60 YGQQGCLPLIPPDATVLFEVELIDF-LD------SADSDTFFALTAEQQDTFPLQKVLKV 112

Query:   155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCY 214
             A      G   F  +    A  RY+ A  +L     T  E Q Q++     V  NL + Y
Sbjct:   113 AGMEREFGNYLFRKQYFEGAKDRYKRAYSILGRNPSTEAE-QCQIDASKLLVLLNLSITY 171

Query:   215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274
                +          KAL+       ++VK  F  G+A + + E+  A   L  A+ +   
Sbjct:   172 LKLESPARALMYGEKALEIDE----RNVKALFRCGQACLCMTEYEKARDFLIRAQHI--- 224

Query:   275 DSVRAEIDKEILKADLGNQQYQKETKARCMKM 306
             +    +I+ E+ K     + Y  + K  C +M
Sbjct:   225 EPFNHDINNELKKLASYYKDYLDKEKEMCCRM 256

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005528 "FK506 binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
4th Layer	5.2.1.8	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	372
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-14
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	3e-09
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 27  ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEK 86
           E    G  V VHY    E +    D +  R   P  F LGS  +IP ++  +L M+ GEK
Sbjct: 3   EKAKKGDTVTVHYTGKLE-DGTVFDSSKDRGK-PFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 87  SDFFASYELCFGALGC-PPRIPAKADLLFEVHLI 119
                  EL +G  G     IP  A L+FEV L+
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 10  QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQL 65
           +     L  K+ + G G  P  G  V VHY        L      D +Y R   P  F L
Sbjct: 97  KTLPSGLQYKVLKAGDGAAPKKGDTVTVHY-----TGTLIDGTVFDSSYDRGQ-PAEFPL 150

Query: 66  GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
           G  G+IP ++  +  M+ G K       EL +G  G P  IP  + L+FEV L+
Sbjct: 151 G--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELL 202

Length = 205

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 16  LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI----PERFQLGSSGLI 71
           L  ++  +G G  P     V+VHY       +L ID T    S+    P  F +  +G+I
Sbjct: 104 LQFRVLTQGEGAIPARTDRVRVHY-----TGKL-IDGTVFDSSVARGEPAEFPV--NGVI 155

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
           P +  A+  M  G K +    +EL +G  G    IP  + L+FEV L+
Sbjct: 156 PGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG0543|consensus	397		100.0
KOG0545|consensus	329		100.0
KOG0544|consensus	108		99.94
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.91
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.85
KOG0553|consensus	304		99.85
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.83
KOG0549|consensus	188		99.83
KOG4234|consensus	271		99.83
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.8
KOG0552|consensus	226		99.78
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.77
KOG0543|consensus	397		99.77
KOG0548|consensus	539		99.68
KOG0547|consensus	606		99.68
KOG4648|consensus	536		99.65
KOG0550|consensus	486		99.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.59
KOG0548|consensus	539		99.54
KOG0551|consensus	390		99.53
PRK15359	144	type III secretion system chaperone protein SscB;	99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.51
KOG0546|consensus	372		99.49
KOG4626|consensus	966		99.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.39
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.39
KOG0376|consensus	476		99.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.37
KOG4626|consensus	966		99.35
KOG4642|consensus	284		99.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.25
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
KOG0624|consensus	504		99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.25
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.23
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.15
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.13
KOG1308|consensus	377		99.11
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.06
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.06
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.06
KOG1126|consensus	638		99.05
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	99.04
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.03
PRK15359	144	type III secretion system chaperone protein SscB;	99.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.01
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.01
KOG0553|consensus	304		99.0
KOG4555|consensus	175		99.0
KOG0547|consensus	606		99.0
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.99
KOG1173|consensus	611		98.99
KOG1155|consensus	559		98.98
KOG0624|consensus	504		98.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.97
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.94
PRK15331	165	chaperone protein SicA; Provisional	98.94
PRK12370	553	invasion protein regulator; Provisional	98.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.92
KOG1155|consensus	559		98.91
PRK12370	553	invasion protein regulator; Provisional	98.9
KOG1126|consensus	638		98.89
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.89
PRK01490	435	tig trigger factor; Provisional	98.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.86
KOG1125|consensus	579		98.86
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.85
PRK11189	296	lipoprotein NlpI; Provisional	98.83
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.82
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.81
PF13371	73	TPR_9: Tetratricopeptide repeat	98.81
KOG0550|consensus	486		98.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.8
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.79
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.79
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.76
PRK10803	263	tol-pal system protein YbgF; Provisional	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.76
PLN02789	320	farnesyltranstransferase	98.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.76
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.75
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.68
PLN02789	320	farnesyltranstransferase	98.67
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.66
KOG1840|consensus	508		98.66
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.64
KOG1310|consensus	758		98.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.61
KOG2076|consensus	895		98.6
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.56
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.55
KOG2003|consensus	840		98.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.54
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.53
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.49
KOG1129|consensus	478		98.47
KOG1125|consensus	579		98.45
KOG4162|consensus	799		98.45
KOG2002|consensus	1018		98.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.43
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.42
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.39
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.39
KOG1840|consensus	508		98.37
PRK14574	822	hmsH outer membrane protein; Provisional	98.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.34
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.32
KOG2002|consensus	1018		98.3
PF13371	73	TPR_9: Tetratricopeptide repeat	98.3
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.29
PF12688	120	TPR_5: Tetratrico peptide repeat	98.27
PRK10803	263	tol-pal system protein YbgF; Provisional	98.26
KOG2076|consensus	895		98.23
KOG1130|consensus	639		98.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.21
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.21
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.2
KOG1174|consensus	564		98.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.17
KOG1128|consensus	777		98.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.16
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.15
PRK14574	822	hmsH outer membrane protein; Provisional	98.15
KOG1173|consensus	611		98.13
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.12
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.12
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.11
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.1
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.08
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.08
KOG4648|consensus	536		98.05
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.03
KOG1156|consensus	700		98.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.0
PF12688	120	TPR_5: Tetratrico peptide repeat	97.99
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.98
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.95
KOG1129|consensus	478		97.94
KOG2003|consensus	840		97.92
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.92
KOG4162|consensus	799		97.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.89
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.87
KOG4151|consensus	748		97.86
PF13431	34	TPR_17: Tetratricopeptide repeat	97.83
KOG1128|consensus	777		97.83
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.83
KOG3060|consensus	289		97.82
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.81
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.79
KOG1130|consensus	639		97.78
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.75
KOG4234|consensus	271		97.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.72
KOG1174|consensus	564		97.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.68
PF13428	44	TPR_14: Tetratricopeptide repeat	97.67
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.67
KOG1156|consensus	700		97.65
PRK10941	269	hypothetical protein; Provisional	97.62
KOG4642|consensus	284		97.61
PRK11906	458	transcriptional regulator; Provisional	97.61
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.54
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.53
KOG3060|consensus	289		97.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.51
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.51
KOG0551|consensus	390		97.49
KOG1127|consensus	1238		97.49
PRK15331	165	chaperone protein SicA; Provisional	97.47
KOG0495|consensus	913		97.46
KOG1127|consensus	1238		97.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.42
PF13512	142	TPR_18: Tetratricopeptide repeat	97.42
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.4
KOG4555|consensus	175		97.39
KOG3785|consensus	557		97.35
PRK11906	458	transcriptional regulator; Provisional	97.35
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.33
KOG1941|consensus	518		97.29
KOG3364|consensus	149		97.26
KOG4814|consensus	872		97.17
KOG0495|consensus	913		97.13
KOG4507|consensus	886		97.07
KOG1586|consensus	288		97.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.06
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.06
KOG2796|consensus	366		97.05
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.05
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.98
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.97
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.94
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.93
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.88
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.84
KOG4340|consensus	459		96.84
KOG0376|consensus	476		96.84
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.82
KOG3785|consensus	557		96.79
KOG0545|consensus	329		96.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.73
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.72
KOG2376|consensus	652		96.7
PF13431	34	TPR_17: Tetratricopeptide repeat	96.7
KOG3081|consensus	299		96.69
KOG2053|consensus	932		96.66
KOG1941|consensus	518		96.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.56
KOG2396|consensus	568		96.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.45
KOG3824|consensus	472		96.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.4
COG2912	269	Uncharacterized conserved protein [Function unknow	96.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.33
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.29
PRK04841	903	transcriptional regulator MalT; Provisional	96.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.23
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.2
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.18
PRK04841	903	transcriptional regulator MalT; Provisional	96.18
KOG1308|consensus	377		96.16
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.15
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.05
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.04
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.92
KOG2471|consensus	696		95.9
KOG1586|consensus	288		95.85
KOG2796|consensus	366		95.83
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	95.79
KOG2376|consensus	652		95.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.7
KOG1585|consensus	308		95.47
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.27
KOG4340|consensus	459		95.27
KOG1585|consensus	308		95.25
PLN03218	1060	maturation of RBCL 1; Provisional	95.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.13
KOG4507|consensus	886		95.0
PLN03218	1060	maturation of RBCL 1; Provisional	94.97
PLN03077	857	Protein ECB2; Provisional	94.72
KOG1915|consensus	677		94.71
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.66
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.54
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.44
KOG0549|consensus	188		94.38
KOG2610|consensus	491		94.38
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.34
KOG2114|consensus	933		94.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.31
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.19
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.09
KOG4814|consensus	872		93.97
KOG3081|consensus	299		93.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.94
KOG2300|consensus	629		93.91
KOG0686|consensus	466		93.83
KOG1915|consensus	677		93.78
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.76
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.59
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.57
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.57
KOG2471|consensus	696		93.35
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.27
KOG1070|consensus	1710		93.24
KOG1070|consensus	1710		93.02
COG3947	361	Response regulator containing CheY-like receiver a	92.96
PLN03077	857	Protein ECB2; Provisional	92.91
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.88
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.41
KOG3824|consensus	472		92.23
KOG3364|consensus	149		92.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	91.97
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.82
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.77
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.53
KOG0292|consensus	1202		91.5
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.42
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.23
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.99
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.53
KOG2053|consensus	932		89.9
PF04212	69	MIT: MIT (microtubule interacting and transport) d	89.56
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.46
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.39
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.36
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.23
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.09
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.02
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.86
PRK10941	269	hypothetical protein; Provisional	88.59
KOG1550|consensus	552		88.54
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	88.51
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	88.17
PHA02537	230	M terminase endonuclease subunit; Provisional	88.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.83
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.83
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.43
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	86.51
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.04
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.84
cd02656	75	MIT MIT: domain contained within Microtubule Inter	85.75
KOG3617|consensus	1416		85.7
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.59
KOG2047|consensus	835		85.55
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	85.23
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	84.41
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.39
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.26
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	83.75
COG3898	531	Uncharacterized membrane-bound protein [Function u	83.49
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.41
KOG2300|consensus	629		83.27
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.24
KOG1464|consensus	440		82.71
KOG2610|consensus	491		82.54
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	82.5
KOG1497|consensus	399		82.3
KOG2047|consensus	835		81.34
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	81.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	80.86
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	80.8
KOG2581|consensus	493		80.64
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.52
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.1

>KOG0543|consensus

Probab=100.00  E-value=7e-51  Score=375.47  Aligned_cols=275  Identities=27%  Similarity=0.383  Sum_probs=253.3

Q ss_pred             CCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCC-CccchHHHHHhccCCCCcEEEE
Q psy8368          13 DGKLMKKIKEKGFGE--NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGS-SGLIPAFEYAILSMQKGEKSDF   89 (372)
Q Consensus        13 d~~i~k~il~~G~g~--~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~-~~~~~~le~~l~~m~~Ge~~~~   89 (372)
                      ||+|+|+|+++|.|+  .|..|..|++||++.+.++  +|+++.   - ++.|.+|+ .+++.||+.||.+|++||++.|
T Consensus        83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~--~f~~~~---~-~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v  156 (397)
T KOG0543|consen   83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG--VFDQRE---L-RFEFGEGEDIDVIEGLEIALRMMKVGEVALV  156 (397)
T ss_pred             CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc--ceeccc---c-ceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence            999999999999993  4999999999999999875  777752   2 67888888 5899999999999999999999


Q ss_pred             EecCCCccC-CCCCCCCCCCCCcEEEEEEEEeeecCccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhc
Q psy8368          90 FASYELCFG-ALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFND  168 (372)
Q Consensus        90 ~i~~~~~yg-~~g~~~~ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~  168 (372)
                      +|+|.|+|| ..++++.||||++|.|+|+|++|. .+        -+.+|.|...      +++..+...++.||.+|+.
T Consensus       157 ~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~-~~--------~~~s~~~~~~------e~l~~A~~~ke~Gn~~fK~  221 (397)
T KOG0543|consen  157 TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFE-LK--------EDESWKMFAE------ERLEAADRKKERGNVLFKE  221 (397)
T ss_pred             EeCcccccCCCCCCCCCCCCCceEEEEEEEEeee-cC--------cccccccchH------HHHHHHHHHHHhhhHHHhh
Confidence            999999999 566788999999999999999998 21        1236666543      4799999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368         169 KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW  248 (372)
Q Consensus       169 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~  248 (372)
                      |+|..|...|.+|+.++++....++++......++..||+|+|.||+|+++|..|+..|+++|.    ++|+|+||+||+
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~~~~N~KALyRr  297 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE----LDPNNVKALYRR  297 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh----cCCCchhHHHHH
Confidence            9999999999999999999888888899999999999999999999999999999999999998    999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q psy8368         249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQ  315 (372)
Q Consensus       249 a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (372)
                      |+||+.+|+|+.|+.+|++|++++|+|.   +++.+|..|+++++.+..+++++|.+||.+....++
T Consensus       298 G~A~l~~~e~~~A~~df~ka~k~~P~Nk---a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~  361 (397)
T KOG0543|consen  298 GQALLALGEYDLARDDFQKALKLEPSNK---AARAELIKLKQKIREYEEKEKKMYANMFAKLAEESA  361 (397)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            9999999999999999999999999999   999999999999999999999999999999887643

>KOG0545|consensus

Probab=100.00  E-value=2.4e-36  Score=260.22  Aligned_cols=278  Identities=21%  Similarity=0.290  Sum_probs=239.3

Q ss_pred             CCCcEEEEEEecCCCCCC--CCCCEEEEEEEEEEcC-CceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEE
Q psy8368          12 QDGKLMKKIKEKGFGENP--VLGAHVQVHYMYYAEA-NELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD   88 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~~--~~g~~V~v~y~~~~~~-~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~   88 (372)
                      .-.|+.|+|+..|.|..|  .+|+.|+|||....-+ .++++|+|+.-+. |.++++|...-+|.||..|.+|.++|++.
T Consensus         8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gk-PmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGK-PMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCC-CeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            346899999999999875  5899999999986543 3569999998888 99999999889999999999999999999


Q ss_pred             EEecCC----------------------------------CccCCCCCC---CCCCCCCcEEEEEEEEeeecCccccccc
Q psy8368          89 FFASYE----------------------------------LCFGALGCP---PRIPAKADLLFEVHLINFSIDPQVVRSS  131 (372)
Q Consensus        89 ~~i~~~----------------------------------~~yg~~g~~---~~ip~~~~~~~~iel~~~~~~~~~~~~~  131 (372)
                      |+|...                                  .+|...|..   .......+++|.|++..|. .+..   +
T Consensus        87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe-~P~q---Y  162 (329)
T KOG0545|consen   87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVE-APSQ---Y  162 (329)
T ss_pred             hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhcc-Cchh---h
Confidence            987642                                  111111111   1233456899999999998 3322   1


Q ss_pred             cccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---CCChHHHHHHHHHHHHHHH
Q psy8368         132 ADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---VTNYEDQMQLEEYLCRVYR  208 (372)
Q Consensus       132 ~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~l~~~l~~  208 (372)
                        ..+.|.|+.+|+      +..+..+..+||.+|+.|+|.+|...|+.|+..+....   .|.++++.++......++.
T Consensus       163 --q~e~WqlsddeK------mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLll  234 (329)
T KOG0545|consen  163 --QRETWQLSDDEK------MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLL  234 (329)
T ss_pred             --ccccccCCchHh------hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHH
Confidence              145899998876      78899999999999999999999999999998886643   6778899999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      |.++|+++.++|.+++.+|..+|+    .+|.|+|||||+|+|+....+..+|..+|.++|+++|.-+  ..+.++|..+
T Consensus       235 Ny~QC~L~~~e~yevleh~seiL~----~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla--svVsrElr~l  308 (329)
T KOG0545|consen  235 NYCQCLLKKEEYYEVLEHCSEILR----HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA--SVVSRELRLL  308 (329)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH--HHHHHHHHHH
Confidence            999999999999999999999998    9999999999999999999999999999999999999865  5788999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q psy8368         289 DLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~  308 (372)
                      ..++.+.+...+-.+++||+
T Consensus       309 e~r~~ek~~edr~~~~kmfs  328 (329)
T KOG0545|consen  309 ENRMAEKQEEDRLRCRKMFS  328 (329)
T ss_pred             HHHHHHhhhHHHHHHHHhcC
Confidence            99999999999999999996

>KOG0544|consensus

Probab=99.94  E-value=6.2e-26  Score=165.54  Aligned_cols=105  Identities=29%  Similarity=0.506  Sum_probs=99.9

Q ss_pred             cEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecC
Q psy8368          15 KLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASY   93 (372)
Q Consensus        15 ~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~   93 (372)
                      |+.+.+++.|+|.. |+.|++|++||++.+.||. .|||+.+++. |+.|.+|.|.+|.||++++..|.+||++.+.|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~-kfDSs~dr~k-Pfkf~IGkgeVIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGK-KFDSSRDRGK-PFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCc-EeecccccCC-CeeEEecCcceeechhhcchhccccccceeeecc
Confidence            47889999999965 9999999999999999865 9999999998 9999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368          94 ELCFGALGCPPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        94 ~~~yg~~g~~~~ip~~~~~~~~iel~~~  121 (372)
                      +++||..|.|..||||++|+|+|+|+.+
T Consensus        80 d~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            9999999988899999999999999876

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8e-24  Score=179.11  Aligned_cols=108  Identities=32%  Similarity=0.540  Sum_probs=102.1

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      +..+|+.+++++.|+|..|..|+.|++||+|++.||+ +|||++.+++ |+.|++|  .+|+||.++|.+|++|+++.++
T Consensus        98 ~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~-vFDsS~~rg~-p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~  173 (205)
T COG0545          98 TLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGT-VFDSSYDRGQ-PAEFPLG--GVIPGWDEGLQGMKVGGKRKLT  173 (205)
T ss_pred             ECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCC-ccccccccCC-CceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence            4678899999999999999999999999999999865 9999999999 9999999  9999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||+++||..|.+..||||++|+|+|+|+++.
T Consensus       174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         174 IPPELAYGERGVPGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             eCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence            99999999999877899999999999999763

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.85  E-value=7.9e-21  Score=166.34  Aligned_cols=106  Identities=28%  Similarity=0.447  Sum_probs=99.5

Q ss_pred             CCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEe
Q psy8368          12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA   91 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i   91 (372)
                      ..+|+.++|+++|+|..|..||.|+|||++++.+| ++|||++.++. |++|.+|  .++|||+++|.+|++|+++.|.|
T Consensus       100 t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG-~vfdss~~~g~-P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570        100 TESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDG-TVFDSSVARGE-PAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             CCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCC-CEEEeccCCCC-CeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            56789999999999999999999999999999875 59999998888 9999997  79999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368          92 SYELCFGALGCPPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        92 ~~~~~yg~~g~~~~ip~~~~~~~~iel~~~  121 (372)
                      |++++||..|.++.|||+++++|+|+|++|
T Consensus       176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            999999999988889999999999999976

>KOG0553|consensus

Probab=99.85  E-value=8.1e-21  Score=169.80  Aligned_cols=125  Identities=20%  Similarity=0.254  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      +-...++.+|.+||.+.+.++|.+|+..|.+||.+.|..               ..+|.|+|.+|.+||+|..|+++|+.
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence            467899999999999999999999999999999998776               68999999999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      ||.    +||.++|+|.|+|.||+.+|+|++|++.|++||.++|+|.   ..+..|..+...+.+..
T Consensus       141 Al~----iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALS----IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHh----cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcCCC
Confidence            998    9999999999999999999999999999999999999999   99999999988877655

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.83  E-value=5.6e-20  Score=157.16  Aligned_cols=109  Identities=19%  Similarity=0.310  Sum_probs=97.5

Q ss_pred             cCCCcEEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEE
Q psy8368          11 IQDGKLMKKIKEK--GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD   88 (372)
Q Consensus        11 ~~d~~i~k~il~~--G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~   88 (372)
                      .+..|+++++++.  |+|..|..||.|++||++++.+|. +|++++. .. |++|.+|.+.+++||+++|.+|++||++.
T Consensus        66 ~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~-v~~ss~~-~~-P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        66 TSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGD-VIYSEEE-LG-PQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             ECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCC-EEEeCCC-CC-CEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            3566777777765  666679999999999999998865 8998875 35 99999999999999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          89 FFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        89 ~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |.+|+++|||..|.+..||+|++|+|+|+|+++.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888899999999999999886

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0549|consensus

Probab=99.83  E-value=6.6e-20  Score=151.86  Aligned_cols=109  Identities=30%  Similarity=0.531  Sum_probs=97.0

Q ss_pred             CCCcEEEEEEecCCC--CCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEE
Q psy8368          12 QDGKLMKKIKEKGFG--ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDF   89 (372)
Q Consensus        12 ~d~~i~k~il~~G~g--~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~   89 (372)
                      .++.+.-.|++.-..  .....||.|.+||++.+.||+ +||||+.++. |++|.+|.+++|+||+.+|.+|.+||+..+
T Consensus        66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt-~fdSS~~rg~-P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl  143 (188)
T KOG0549|consen   66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGT-KFDSSYSRGA-PFTFTLGTGQVIKGWDQGLLGMCVGEKRKL  143 (188)
T ss_pred             CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCC-EEeeeccCCC-CEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence            345566666665222  236799999999999888865 9999999999 999999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          90 FASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        90 ~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      .|||+++||+.|.|+.||++++|+|+|+++.+.
T Consensus       144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~  176 (188)
T KOG0549|consen  144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIE  176 (188)
T ss_pred             ecCccccCccCCCCCCCCCCeeEEEEEEEEEee
Confidence            999999999999988999999999999999998

>KOG4234|consensus

Probab=99.83  E-value=2.1e-19  Score=151.40  Aligned_cols=134  Identities=16%  Similarity=0.221  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      ..+..+..+|..||.+|+.|+|.+|...|..||.+++..+          ...+..||.|+|.|++|++.|..||..|.+
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsK  159 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSK  159 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence            3578899999999999999999999999999999987653          245689999999999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                      ||+    ++|.+.||+.|||.+|..+..|++|+++|++.++++|.+.   +++..+.++...+....++.+
T Consensus       160 aie----l~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~---ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  160 AIE----LNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR---EAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             hHh----cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH---HHHHHHHhcCHHHHHHHHHHH
Confidence            998    9999999999999999999999999999999999999999   999999999888877766655

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.80  E-value=1e-18  Score=158.56  Aligned_cols=107  Identities=31%  Similarity=0.541  Sum_probs=99.2

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      ..++|++|+|+++|+|..|..||.|+|||++++.+| ++|++++.++. |++|.++  .++|||+++|.+|++|+++.|.
T Consensus       143 ~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG-~vfdss~~~g~-p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        143 TTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDG-KEFDNSYTRGE-PLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             ECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCC-CEeeccccCCC-ceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            357789999999999999999999999999998765 59999988888 9999997  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      ||++++||..|.+ .||+|++++|+|+|+++.
T Consensus       219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~  249 (269)
T PRK10902        219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVK  249 (269)
T ss_pred             ECchhhCCCCCCC-CCCCCCcEEEEEEEEEec
Confidence            9999999998875 699999999999999998

>KOG0552|consensus

Probab=99.78  E-value=2.2e-18  Score=149.77  Aligned_cols=109  Identities=28%  Similarity=0.463  Sum_probs=100.0

Q ss_pred             ccCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeE-EEcCCCccchHHHHHhccCCCCcEEE
Q psy8368          10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER-FQLGSSGLIPAFEYAILSMQKGEKSD   88 (372)
Q Consensus        10 i~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~-~~~g~~~~~~~le~~l~~m~~Ge~~~   88 (372)
                      ++-.+|+.++-++-|.|..+..|+.|.+||.+++...|++||+++...  |+. |.+|.+.+|+||+.+|.+|++|.+..
T Consensus       116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~k--p~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGK--PFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCCC--CccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            344678889999999999999999999999999985567999998654  888 99999999999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368          89 FFASYELCFGALGCPPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        89 ~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~  121 (372)
                      |+|||.++||..+.+ .||+|++|+|+|+|+.+
T Consensus       194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            999999999999987 69999999999999976

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.77  E-value=5.1e-18  Score=131.10  Aligned_cols=92  Identities=38%  Similarity=0.720  Sum_probs=84.2

Q ss_pred             CCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCC-C
Q psy8368          26 GEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC-P  103 (372)
Q Consensus        26 g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~-~  103 (372)
                      |.. |..||.|+|||++++.+ +++|++++.... |++|.+|.+.+++||+.+|.+|++||++.|.||++++||..+. +
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~-~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLED-GKVFDSSYQEGE-PFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETT-SEEEEETTTTTS-EEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECC-CcEEEEeeecCc-ceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            344 89999999999999985 679999977777 9999999999999999999999999999999999999999887 4


Q ss_pred             CCCCCCCcEEEEEEEE
Q psy8368         104 PRIPAKADLLFEVHLI  119 (372)
Q Consensus       104 ~~ip~~~~~~~~iel~  119 (372)
                      ..||++++++|+|+|+
T Consensus        79 ~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTBTTTSEEEEEEEEE
T ss_pred             CCcCCCCeEEEEEEEC
Confidence            4799999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0543|consensus

Probab=99.77  E-value=1e-17  Score=155.76  Aligned_cols=265  Identities=20%  Similarity=0.210  Sum_probs=169.8

Q ss_pred             ecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCC
Q psy8368          22 EKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGAL  100 (372)
Q Consensus        22 ~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~  100 (372)
                      ++|+|.. |..|+.|.+||++++.+|+ .||||.+ +. |+.|.+|.|.++.||..++.+|+.              |..
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt-~fdss~d-~~-~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~   63 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGT-KFDSSRD-GD-PFKFDLGKGSVIKGWDLGVATMKK--------------GEA   63 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCe-ecccccC-CC-ceeeecCCCccccccccccccccc--------------ccc
Confidence            4799987 9999999999999999875 8999988 67 999999999999999999999999              677


Q ss_pred             CCCCCCCCCCcEEEEEEEE------eeecCccccc-c--------------------ccccccccccCccCchhHHHHHH
Q psy8368         101 GCPPRIPAKADLLFEVHLI------NFSIDPQVVR-S--------------------SADIESDFIDSQVEEPAFAKVLK  153 (372)
Q Consensus       101 g~~~~ip~~~~~~~~iel~------~~~~~~~~~~-~--------------------~~~~~~~~~~~~~e~~~~~~~~~  153 (372)
                      +.|+.||+++++.|+|++.      .+. .++.++ .                    |.+....|++...+-...-+-++
T Consensus        64 ~~pp~ip~~a~l~fe~el~Dg~iiKrii-r~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi~Gle  142 (397)
T KOG0543|consen   64 GSPPKIPSNATLLFEVELLDGGIIKRII-REGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVIEGLE  142 (397)
T ss_pred             CCCCCCCCCcceeeeecccCCceEEeee-ecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCccchhHHHH
Confidence            8889999999999999963      222 233331 0                    11111122222211111111222


Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------------CChHHHHHHHHHHHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------------TNYEDQMQLEEYLCRVYRNLMVCY  214 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------------~~~~~~~~~~~l~~~l~~Nla~~~  214 (372)
                      .+......|-..+---.+.-|.-   ......+..|.                   .+.....+.-.. +...--.|+.|
T Consensus       143 ~al~~M~~GE~a~v~i~~~YayG---~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~-A~~~ke~Gn~~  218 (397)
T KOG0543|consen  143 IALRMMKVGEVALVTIDPKYAYG---EEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA-ADRKKERGNVL  218 (397)
T ss_pred             HHHHhcCccceEEEEeCcccccC---CCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH-HHHHHHhhhHH
Confidence            22222222222111111100000   00000000000                   011111111111 34455678999


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCc-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKD-----------VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----------~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      +|.++|..|+..|++|+.++....+.+           ..++.++|.||.++++|.+|+..+.++|.++|+|.   .+..
T Consensus       219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~---KALy  295 (397)
T KOG0543|consen  219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV---KALY  295 (397)
T ss_pred             HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch---hHHH
Confidence            999999999999999998664332222           23799999999999999999999999999999999   7777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .-+++...+.++. ..+..++++....+.
T Consensus       296 RrG~A~l~~~e~~-~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  296 RRGQALLALGEYD-LARDDFQKALKLEPS  323 (397)
T ss_pred             HHHHHHHhhccHH-HHHHHHHHHHHhCCC
Confidence            7777777777664 345566666555544

>KOG0548|consensus

Probab=99.68  E-value=3e-16  Score=149.76  Aligned_cols=117  Identities=23%  Similarity=0.356  Sum_probs=110.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+...++.||.+|+.|+|..|+.+|++||...|..               ..+|.|+|.||+++++|..|+.+|+.+++ 
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------------a~lYsNRAac~~kL~~~~~aL~Da~~~ie-  420 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---------------ARLYSNRAACYLKLGEYPEALKDAKKCIE-  420 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence            47788999999999999999999999999987554               78999999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                         ++|++.|+|+|.|.|+..+.+|+.|++.|.++++++|++.   ++...+.+|...+
T Consensus       421 ---L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~---e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  421 ---LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA---EAIDGYRRCVEAQ  473 (539)
T ss_pred             ---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHh
Confidence               9999999999999999999999999999999999999999   9999998887754

>KOG0547|consensus

Probab=99.68  E-value=5.7e-16  Score=146.04  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy8368         149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCAS  228 (372)
Q Consensus       149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~  228 (372)
                      +++.+.+..+|.+||.+|+.|+|++||.+|++||.+++..               ...|.|+|.||..+|+|++.+++|+
T Consensus       109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~T  173 (606)
T KOG0547|consen  109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCT  173 (606)
T ss_pred             HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHH
Confidence            4678999999999999999999999999999999998764               4789999999999999999999999


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA-KDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p-~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      +||+    ++|+.+||++|||.||..+|++.+|+.+..-..-+.- +|.   .+...+.++.++....+.
T Consensus       174 kALE----l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka  236 (606)
T KOG0547|consen  174 KALE----LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA---SIEPMAERVLKKQAMKKA  236 (606)
T ss_pred             HHhh----cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc---hhHHHHHHHHHHHHHHHH
Confidence            9998    9999999999999999999999999999875544433 444   566666666665554433

>KOG4648|consensus

Probab=99.65  E-value=5.2e-16  Score=140.67  Aligned_cols=120  Identities=20%  Similarity=0.221  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy8368         149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCAS  228 (372)
Q Consensus       149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~  228 (372)
                      ++++..+..+|+.||.||++|.|.+|+.||.+++...++.               ..++.|+|.+|++++.|..|..+|+
T Consensus        91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------pV~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen   91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------PVYHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------ccchhhHHHHHHHHHHHHHHHHhHH
Confidence            4578889999999999999999999999999999998877               4789999999999999999999999


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      .|+.    +|....|||.||+.|...||...+|.++++.+|+|.|++.   ++++.++.+..
T Consensus       156 ~Aia----Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~---ELkK~~a~i~S  210 (536)
T KOG4648|consen  156 AAIA----LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI---ELKKSLARINS  210 (536)
T ss_pred             HHHH----hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH---HHHHHHHHhcc
Confidence            9997    9999999999999999999999999999999999999998   88777777655

>KOG0550|consensus

Probab=99.63  E-value=4.2e-15  Score=137.79  Aligned_cols=151  Identities=16%  Similarity=0.248  Sum_probs=126.6

Q ss_pred             cCccCc--hhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8368         140 DSQVEE--PAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN  217 (372)
Q Consensus       140 ~~~~e~--~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl  217 (372)
                      ++|+..  .+.....+....+++.||.+|+.|+|..|.++|+.||.+.|....           ..+.||.|+|.+..++
T Consensus       232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rL  300 (486)
T KOG0550|consen  232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRL  300 (486)
T ss_pred             cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhccc
Confidence            555442  222345678899999999999999999999999999999766422           2278999999999999


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         218 KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       218 ~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      |+..+|+.+|+.|++    +||...|||.++|.||+.+++|++|.++|++|++++.+ .   ++++.+.+++..+++.+ 
T Consensus       301 grl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~---e~r~~l~~A~~aLkkSk-  371 (486)
T KOG0550|consen  301 GRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-C---EIRRTLREAQLALKKSK-  371 (486)
T ss_pred             CCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---chHHHHHHHHHHHHHhh-
Confidence            999999999999998    99999999999999999999999999999999999988 7   88999998888777554 


Q ss_pred             HHHHHHHhhccCCCC
Q psy8368         298 ETKARCMKMFSSSSS  312 (372)
Q Consensus       298 ~~~~~~~~~~~~~~~  312 (372)
                        ++.|-++++....
T Consensus       372 --Rkd~ykilGi~~~  384 (486)
T KOG0550|consen  372 --RKDWYKILGISRN  384 (486)
T ss_pred             --hhhHHHHhhhhhh
Confidence              3445555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.59  E-value=3.2e-14  Score=136.25  Aligned_cols=119  Identities=25%  Similarity=0.299  Sum_probs=110.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..++..|+.+|..|+|..|+..|.+||...+..               ..+++|+|.||+++|+|.+|+.+++++++  
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--   64 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------------AELYADRAQANIKLGNFTEAVADANKAIE--   64 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            3467889999999999999999999999987655               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                        ++|++..+|+++|.+|..+|+|++|+.+|+++++++|++.   .+...+..|...+...
T Consensus        65 --l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         65 --LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS---RFTKLIKECDEKIAEE  120 (356)
T ss_pred             --hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhh
Confidence              9999999999999999999999999999999999999999   9999999998877543

>KOG0548|consensus

Probab=99.54  E-value=2.8e-14  Score=136.34  Aligned_cols=113  Identities=22%  Similarity=0.302  Sum_probs=107.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+++.||.+|..|+|..|+.+|+.||.+.|..               ..+|.|++.||.++++|.+|+.+..+..+  
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------------hvlySnrsaa~a~~~~~~~al~da~k~~~--   64 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------------HVLYSNRSAAYASLGSYEKALKDATKTRR--   64 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------------cchhcchHHHHHHHhhHHHHHHHHHHHHh--
Confidence            5678999999999999999999999999997765               68999999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                        ++|.++|+|.|+|.++..+|+|++|+..|.++|+.+|+|.   .+...|..+.
T Consensus        65 --l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~---~L~~gl~~a~  114 (539)
T KOG0548|consen   65 --LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK---QLKTGLAQAY  114 (539)
T ss_pred             --cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH---HHHHhHHHhh
Confidence              9999999999999999999999999999999999999999   8888888877

>KOG0551|consensus

Probab=99.53  E-value=1e-13  Score=125.52  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.|..+|+.||.+|+.++|..|+..|+++|..-...+           .+.+.||+|+|.|.+-+|+|..||.+|.+|+.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999998643221           24478999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          ++|.+.||++|-|+|++.|.++.+|...+...+.++-...
T Consensus       148 ----~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  148 ----LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             ----cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence                9999999999999999999998888888877776654433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.53  E-value=4.1e-13  Score=111.99  Aligned_cols=114  Identities=18%  Similarity=0.102  Sum_probs=103.9

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..++..|+|.+|+..|.+++...+..               ...+.++|.++.++|+|.+|+..|.+++.    
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~----   86 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAINFYGHALM----   86 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----
Confidence            45678999999999999999999999986655               68999999999999999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      ++|+++.+++++|.++..+|++++|+..|.+|++++|+++   ......+.++..+
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~---~~~~~~~~~~~~l  139 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA---SWSEIRQNAQIMV  139 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999   7776666665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.51  E-value=3.8e-13  Score=138.37  Aligned_cols=134  Identities=20%  Similarity=0.209  Sum_probs=111.9

Q ss_pred             CCCCCcEEEEEEEEeeecCccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhh
Q psy8368         106 IPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL  185 (372)
Q Consensus       106 ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~  185 (372)
                      +|++.++....++..+.           ....|.|++++      ....+..+++.||.+|+.|+|.+|+..|.++|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~------~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~  157 (615)
T TIGR00990        95 APKNAPVEPADELPEID-----------ESSVANLSEEE------RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK  157 (615)
T ss_pred             CCCCCCCCccccccccc-----------hhhcccCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            55666666655555444           12235555443      46789999999999999999999999999999886


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q psy8368         186 INTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHL  265 (372)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~  265 (372)
                      +.                ..+|.|+|.||+++|+|++|+.+|+++|+    ++|++.++|+++|.+|..+|+|++|+.+|
T Consensus       158 p~----------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~----l~p~~~~a~~~~a~a~~~lg~~~eA~~~~  217 (615)
T TIGR00990       158 PD----------------PVYYSNRAACHNALGDWEKVVEDTTAALE----LDPDYSKALNRRANAYDGLGKYADALLDL  217 (615)
T ss_pred             Cc----------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            43                25799999999999999999999999998    99999999999999999999999999999


Q ss_pred             HHHHhhcCCCc
Q psy8368         266 KTARKLAAKDS  276 (372)
Q Consensus       266 ~~al~l~p~~~  276 (372)
                      ..++.+++.+.
T Consensus       218 ~~~~~~~~~~~  228 (615)
T TIGR00990       218 TASCIIDGFRN  228 (615)
T ss_pred             HHHHHhCCCcc
Confidence            99988877654

>KOG0546|consensus

Probab=99.49  E-value=5.1e-14  Score=128.69  Aligned_cols=176  Identities=24%  Similarity=0.287  Sum_probs=150.7

Q ss_pred             CccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh-H--H-HHHH
Q psy8368         124 DPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY-E--D-QMQL  199 (372)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~--~-~~~~  199 (372)
                      ...+++.+++.|.+|.  .....++...+...+..++.||..|++++|..|...|.++++++...+.... +  . ...+
T Consensus       193 ~~~sgd~~~d~p~~~~--~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~  270 (372)
T KOG0546|consen  193 PDETGDSYEDYPKDDR--SWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPL  270 (372)
T ss_pred             CCCCCCcccccccccc--cccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccc
Confidence            3455677787776542  2233455668899999999999999999999999999999999875221111 1  1 2446


Q ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368         200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA  279 (372)
Q Consensus       200 ~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~  279 (372)
                      ..++..++.|++.|-++++.|..|+..|..+++    .++...+|+||++.+++.+.++++|++++..+....|++.   
T Consensus       271 ~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~---  343 (372)
T KOG0546|consen  271 RELRFSIRRNLAAVGLKVKGRGGARFRTNEALR----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK---  343 (372)
T ss_pred             cccccccccchHHhcccccCCCcceeccccccc----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH---
Confidence            677889999999999999999999999999997    8999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         280 EIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      ++...+....+...++..++++.+.+||.
T Consensus       344 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  344 AIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999874

>KOG4626|consensus

Probab=99.45  E-value=7.5e-13  Score=128.25  Aligned_cols=170  Identities=15%  Similarity=0.153  Sum_probs=112.7

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+.+.||.+..+|.++.|...|.+|+.+.+..               +..++|+|..|-+.|++++|+.+|.+||+   
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---  416 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALR---  416 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHh---
Confidence            333444444444444444444444444444333               56777777777777777777777777776   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQ  315 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (372)
                       ++|..+.||.++|..|..+|+.+.|+.+|.+|+.++|..+   +++..|+.+.+.                  .++.+.
T Consensus       417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A---eAhsNLasi~kD------------------sGni~~  474 (966)
T KOG4626|consen  417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA---EAHSNLASIYKD------------------SGNIPE  474 (966)
T ss_pred             -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH---HHHhhHHHHhhc------------------cCCcHH
Confidence             7777777777777777777777777777777777777777   777777766543                  344556


Q ss_pred             chHHHhhhhhhccCCCcccccccccccccccCCCCCchhhHHHHHHhhhhh
Q psy8368         316 HSNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEF  366 (372)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  366 (372)
                      ++..++.+++..|+.+.+.-....--+=.++|..||. -|.||.+|--+..
T Consensus       475 AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~-~~~kl~sivrdql  524 (966)
T KOG4626|consen  475 AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK-RMKKLVSIVRDQL  524 (966)
T ss_pred             HHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH-HHHHHHHHHHHHH
Confidence            7888888888888887766655544444567766664 4677777755443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.39  E-value=1.6e-11  Score=100.85  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++.+|...|++++...+..               ..++.++|.|+.++++|.+|+.+++++++  
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~--   79 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------SRYWLGLAACCQMLKEYEEAIDAYALAAA--   79 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            4567889999999999999999999999876544               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                        .+|.+...++.+|.+|..+|++++|+..|+++++++|++.   .......++...
T Consensus        80 --~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~  131 (135)
T TIGR02552        80 --LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP---EYSELKERAEAM  131 (135)
T ss_pred             --cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---hHHHHHHHHHHH
Confidence              8999999999999999999999999999999999999999   666555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.39  E-value=1.4e-12  Score=109.54  Aligned_cols=72  Identities=24%  Similarity=0.350  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG  101 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g  101 (372)
                      .+..|+.|++||++++.+| ++||||+..+. |+.|.+|.+.+++||+.+|.+|++|+++.|.|||+.+||...
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG-~v~dst~~~~~-P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDG-STAESTRNNGK-PALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCC-CEEEECCCCCC-CEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            3788999999999999775 59999987677 999999999999999999999999999999999999999865

>KOG0376|consensus

Probab=99.38  E-value=4.7e-13  Score=127.10  Aligned_cols=121  Identities=23%  Similarity=0.289  Sum_probs=114.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+++++|.+|+.+.|..|+..|.+||++-+..               +.++.|+|+++++.++|..|+.++.+|++ 
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------------a~~~anRa~a~lK~e~~~~Al~Da~kaie-   66 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------------AIYFANRALAHLKVESFGGALHDALKAIE-   66 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------------eeeechhhhhheeechhhhHHHHHHhhhh-
Confidence            46788999999999999999999999999997765               67899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                         ++|...|+|+|+|.+++.++++.+|+.+|++...+.|+++   .+++.+.+|.....+++
T Consensus        67 ---~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~---~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   67 ---LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP---DATRKIDECNKIVSEEK  123 (476)
T ss_pred             ---cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH---HHHHHHHHHHHHHHHHh
Confidence               9999999999999999999999999999999999999999   99999999999887654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.37  E-value=2.5e-11  Score=100.59  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=97.1

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +..+.+...|..++..|++++|...|+-...+.+..               ...++|+|.|+..+|+|.+||..|.+++.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~   97 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------FDYWFRLGECCQAQKHWGEAIYAYGRAAQ   97 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            346778889999999999999999999999987665               68999999999999999999999999997


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          ++|+++.++++.|.||+.+|+.+.|+..|+.|+...-.++
T Consensus        98 ----L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363         98 ----IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             ----cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence                9999999999999999999999999999999999985544

>KOG4626|consensus

Probab=99.35  E-value=3e-12  Score=124.12  Aligned_cols=122  Identities=16%  Similarity=0.105  Sum_probs=83.0

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....|.+.||.|-..+.|+.|+.+|.+|+.+-+..               +.+|.|+|-.|...|..+-||.+|+++|. 
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------------A~a~gNla~iYyeqG~ldlAI~~Ykral~-  314 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------------AVAHGNLACIYYEQGLLDLAIDTYKRALE-  314 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------------hhhccceEEEEeccccHHHHHHHHHHHHh-
Confidence            36788899999999999999999999999886554               45566666666666666666666666665 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                         ++|+...||.++|.|+..+|+..+|..+|++||.+.|+++   ++...|+.++.++.....
T Consensus       315 ---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha---dam~NLgni~~E~~~~e~  372 (966)
T KOG4626|consen  315 ---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA---DAMNNLGNIYREQGKIEE  372 (966)
T ss_pred             ---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHhccchH
Confidence               6666666666666666666666666666666666666666   666666665555554433

>KOG4642|consensus

Probab=99.34  E-value=3.9e-12  Score=110.50  Aligned_cols=119  Identities=24%  Similarity=0.317  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+++.||.+|..++|..|+.+|.+||.+.|..               ++.+.|+|.||+++++|+.+..+|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------------~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------------ASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            357899999999999999999999999999987665               68999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS--VRAEIDKEILKADL  290 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~--~~~~~~~~l~~~~~  290 (372)
                          ++|+.+|++|-+|.+.+....|.+|+..+++|..+--..+  ...++...|..++.
T Consensus        73 ----l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~  128 (284)
T KOG4642|consen   73 ----LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK  128 (284)
T ss_pred             ----cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence                9999999999999999999999999999999966532111  11256666666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.25  E-value=2.4e-11  Score=87.81  Aligned_cols=66  Identities=21%  Similarity=0.385  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ-EWTSAIKHLKTARKLAA  273 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~-~~e~A~~~~~~al~l~p  273 (372)
                      +..+.++|.+++.+++|++|+.+|+++++    ++|+++.+++++|.+|..+| ++++|+.++++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46789999999999999999999999998    99999999999999999999 79999999999999998

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.25  E-value=1.5e-10  Score=119.32  Aligned_cols=118  Identities=12%  Similarity=0.047  Sum_probs=78.0

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|++++|+..|.+++...+..               ...+.++|.++..+|+|++|+.+++++++ 
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~-  393 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV---------------TQSYIKRASMNLELGDPDKAEEDFDKALK-  393 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence            34567788999999999999999999999886543               34555666666666666666666666665 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                         .+|++..+++.+|.+|..+|++++|+.+|+++++++|++.   .++..++.+....+
T Consensus       394 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~---~~~~~la~~~~~~g  447 (615)
T TIGR00990       394 ---LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI---FSHIQLGVTQYKEG  447 (615)
T ss_pred             ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH---HHHHHHHHHHHHCC
Confidence               5566666666666666666666666666666666666655   55555544444333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=2.4e-10  Score=106.91  Aligned_cols=105  Identities=15%  Similarity=0.072  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|..+...|++..|+..|.+++...+..               ..+++++|.++..+|+|++|+..++++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            346779999999999999999999999999987655               68999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          ++|++..+++++|.++...|++++|+.+|+++++++|+++
T Consensus       127 ----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        127 ----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             ----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                9999999999999999999999999999999999999997

>KOG0624|consensus

Probab=99.25  E-value=8.3e-11  Score=107.25  Aligned_cols=175  Identities=17%  Similarity=0.229  Sum_probs=143.3

Q ss_pred             ccccccccccCccCchhHH--HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHH
Q psy8368         131 SADIESDFIDSQVEEPAFA--KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYR  208 (372)
Q Consensus       131 ~~~~~~~~~~~~~e~~~~~--~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~  208 (372)
                      +-++.+++.++|+.+.+|.  ..++.+....+.+......+.|.+++..+.+.++.-|..+.           .+...+-
T Consensus       243 L~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~-----------ir~~~~r  311 (504)
T KOG0624|consen  243 LKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM-----------IRYNGFR  311 (504)
T ss_pred             HHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc-----------eeeeeeh
Confidence            4555678888999988886  77788888899999999999999999999999987654210           1133455


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      -++.||..-+++.+||..|.++|+    ++|+++.++..||.||+.-..|+.|+.+|++|++++++|.   .++..+.++
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~---~~reGle~A  384 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLD----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT---RAREGLERA  384 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH---HHHHHHHHH
Confidence            578999999999999999999998    9999999999999999999999999999999999999999   999999988


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhcc
Q psy8368         289 DLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHE  328 (372)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (372)
                      ++..++   ..+..|-++++-..+  ..+.++-++++...
T Consensus       385 krlkkq---s~kRDYYKILGVkRn--AsKqEI~KAYRKlA  419 (504)
T KOG0624|consen  385 KRLKKQ---SGKRDYYKILGVKRN--ASKQEITKAYRKLA  419 (504)
T ss_pred             HHHHHH---hccchHHHHhhhccc--ccHHHHHHHHHHHH
Confidence            776553   455667777776665  34555555655543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.25  E-value=2.4e-10  Score=100.50  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=95.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHH-HHccC--HHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCY-NNNKQ--YKLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~-~kl~~--y~~Ai~~~~~aL  231 (372)
                      +..+...|..+...|+++.|+..|.+|+.+.+..               ..++.++|.++ ...|+  +.+|+..+++++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---------------AELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            5678899999999999999999999999997765               68899999985 77787  599999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +    .+|++..+++.+|.++..+|+|++|+.+++++++++|.+.
T Consensus       138 ~----~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        138 A----LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             H----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            8    9999999999999999999999999999999999999876

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.5e-11  Score=100.70  Aligned_cols=71  Identities=30%  Similarity=0.357  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG  101 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g  101 (372)
                      +..|+.|+++|++++.+ +++||+|....+ |+.|.+|.+++++|||.||.+|.+|++..|.|||+.|||...
T Consensus         3 i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~-P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047           3 IEKGDVVSLHYTLKVED-GEVVDTTDENYG-PLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             ccCCCEEEEEEEEEecC-CcEEEcccccCC-CeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            67899999999999998 679999987566 999999999999999999999999999999999999999865

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.15  E-value=1.5e-10  Score=99.92  Aligned_cols=70  Identities=20%  Similarity=0.282  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG  101 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g  101 (372)
                      +..++.|+|+|++++.+| ++||+|+. .. |++|.+|.+.++|+||.+|.+|++|++..|.|||+.|||...
T Consensus         3 I~~~~vV~l~Y~l~~~dG-~v~dst~~-~~-Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDG-VLVDESPV-SA-PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             cCCCCEEEEEEEEEeCCC-CEEEecCC-CC-CeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            578899999999999764 69999975 45 999999999999999999999999999999999999999865

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.13  E-value=1.6e-09  Score=86.36  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=92.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+++.|+|.+|+..|.+++...+..+            ....+++++|.++++.++|+.|+..+..++.   
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---   67 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST------------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVK---   67 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHH---
Confidence            4678899999999999999999999998764431            1135788999999999999999999999997   


Q ss_pred             cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       .+|++   ..+++.+|.++..++++++|+..+.++++..|++.
T Consensus        68 -~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        68 -KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             -HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence             66774   67899999999999999999999999999999998

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1308|consensus

Probab=99.11  E-value=1.1e-10  Score=106.54  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=110.2

Q ss_pred             cCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy8368         140 DSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ  219 (372)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~  219 (372)
                      |........++.+++++..+..+..++..|.|+.|+.+|..||.+.+..               ..+|.+++.+++++++
T Consensus        99 MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~k  163 (377)
T KOG1308|consen   99 MGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKK  163 (377)
T ss_pred             hchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccC
Confidence            7776777778999999999999999999999999999999999987665               6899999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +..||.+|..|+.    ++|+..+.|-.++.|+..+|++++|..+|..|++++-+-.
T Consensus       164 p~~airD~d~A~e----in~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~  216 (377)
T KOG1308|consen  164 PNAAIRDCDFAIE----INPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEA  216 (377)
T ss_pred             Cchhhhhhhhhhc----cCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHH
Confidence            9999999999998    9999999999999999999999999999999999987654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.07  E-value=4.1e-09  Score=112.48  Aligned_cols=119  Identities=12%  Similarity=0.020  Sum_probs=88.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+.+.|++++|+..|.+++...|..               ..+++|+|.++..+|++++|+..++++++   
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---  671 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNN---------------SNYQAALGYALWDSGDIAQSREMLERAHK---  671 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence            345556666666666666666666666665443               56788888888888888888888888887   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                       ++|+++.+++++|.++..+|++++|+.+|++|++++|++.   .+...+..+........
T Consensus       672 -l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a---~i~~~~g~~~~~~~~~~  728 (987)
T PRK09782        672 -GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA---LITPLTPEQNQQRFNFR  728 (987)
T ss_pred             -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc---hhhhhhhHHHHHHHHHH
Confidence             7888888888888888888888888888888888888888   77777776665544443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=7.3e-10  Score=78.97  Aligned_cols=65  Identities=14%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       208 ~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +++|..+++.|+|++|+..++++++    .+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALK----QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHC----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3689999999999999999999997    9999999999999999999999999999999999999975

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.06  E-value=2.7e-09  Score=79.77  Aligned_cols=99  Identities=21%  Similarity=0.302  Sum_probs=89.0

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..++..|++.+|+..+.++++..+..               ..++.++|.|+...+++++|+.+++++++    
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----   62 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKALE----   62 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            35678899999999999999999999876543               36788999999999999999999999997    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      ..|.+..+++.+|.++...|+++.|...+.++++++|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            88888899999999999999999999999999998874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.06  E-value=3.4e-09  Score=91.03  Aligned_cols=110  Identities=20%  Similarity=0.188  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      ....+..+...|..+...|+|++|+.+|.+++...+...  +          ...++.++|.+|.++|+|++|+.++.++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--D----------RSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--h----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346778899999999999999999999999998754321  0          1468899999999999999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhcCCCc
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQE--------------WTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~--------------~e~A~~~~~~al~l~p~~~  276 (372)
                      ++    .+|++..+++.+|.+|..+|+              +++|+..+++++.++|++-
T Consensus        99 l~----~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         99 LE----LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HH----hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            98    899999999999999999988              6788888888888898875

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.06  E-value=9.6e-09  Score=92.63  Aligned_cols=156  Identities=10%  Similarity=0.117  Sum_probs=114.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|..|+..|.+++...+..+            .....++++|.+|+++++|++|+..++++++ 
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-   98 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP------------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-   98 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Confidence            467889999999999999999999999998876432            1135788999999999999999999999998 


Q ss_pred             hccCCCCchh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVK---LFFVWGKALIGL--------QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKAR  302 (372)
Q Consensus       234 ~~~~~p~~~k---a~~r~a~a~~~l--------~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  302 (372)
                         ..|++..   +++.+|.++..+        |++++|+..|++++..+|++.   .+...+..+............ .
T Consensus        99 ---~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~~~~~~~~~~~~~~-~  171 (235)
T TIGR03302        99 ---LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YAPDAKKRMDYLRNRLAGKEL-Y  171 (235)
T ss_pred             ---HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHHHHHHHHHHHH-H
Confidence               8888776   799999999987        889999999999999999998   444444333222211111111 1


Q ss_pred             HHhhccCCCCCCcchHHHhhhhhhccC
Q psy8368         303 CMKMFSSSSSPSQHSNVVRIAYQEHEQ  329 (372)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (372)
                      ...++-..+....+...++.++...|.
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~  198 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPD  198 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence            122222333344566777777766654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126|consensus

Probab=99.05  E-value=5.1e-10  Score=109.91  Aligned_cols=134  Identities=14%  Similarity=0.104  Sum_probs=111.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ..+.+...||.|--+++++.|+.+|++|+++.+..               +-.|.-+|.=+.....|+.|..+|+.||. 
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f---------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~-  483 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF---------------AYAYTLLGHESIATEEFDKAMKSFRKALG-  483 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc---------------chhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence            35788999999999999999999999999997755               46677788888888889999999999987 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                         ++|++-.|||-+|.+|+++++++.|.-.|++|++++|.|.   .+.-.+...+.+.+..+ +.-..|.+.+...
T Consensus       484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---vi~~~~g~~~~~~k~~d-~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---VILCHIGRIQHQLKRKD-KALQLYEKAIHLD  553 (638)
T ss_pred             ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---hHHhhhhHHHHHhhhhh-HHHHHHHHHHhcC
Confidence               8888888999999999999999999999999999999888   88888888887777664 3445555554433

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.1e-08  Score=95.06  Aligned_cols=96  Identities=20%  Similarity=0.329  Sum_probs=76.0

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPA  108 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip~  108 (372)
                      ++.||.|+|+|.|..+  |+.|.+..  .. .+.|.||+|.++|||+.+|.||+.|+...|.+.....|+...+     +
T Consensus       158 a~~gD~v~IDf~g~iD--g~~fegg~--ae-~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----a  227 (441)
T COG0544         158 AENGDRVTIDFEGSVD--GEEFEGGK--AE-NFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----A  227 (441)
T ss_pred             cccCCEEEEEEEEEEc--CeeccCcc--cc-CeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----C
Confidence            8899999999999764  34676653  33 7899999999999999999999999999987777666666544     6


Q ss_pred             CCcEEEEEEEEeeecCccccccccccccccc
Q psy8368         109 KADLLFEVHLINFSIDPQVVRSSADIESDFI  139 (372)
Q Consensus       109 ~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~  139 (372)
                      |.+..|.|+|..|. .    ..++++.+.|.
T Consensus       228 GK~a~F~V~vkeVk-~----~elpEldDEfA  253 (441)
T COG0544         228 GKEATFKVKVKEVK-K----RELPELDDEFA  253 (441)
T ss_pred             CCceEEEEEEEEEe-e----cCCCCCCHHHH
Confidence            77899999999998 2    33454544444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.03  E-value=9.6e-09  Score=90.27  Aligned_cols=127  Identities=12%  Similarity=0.116  Sum_probs=107.5

Q ss_pred             ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368         168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV  247 (372)
Q Consensus       168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r  247 (372)
                      .++..+++..|++++...+..               ...+.++|.+|..+|+|++|+..++++++    ++|++..+++.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~---------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~~~~~  112 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAELYAA  112 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence            456677777777777775554               67899999999999999999999999998    99999999999


Q ss_pred             HHHHH-HhcCC--HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcch
Q psy8368         248 WGKAL-IGLQE--WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHS  317 (372)
Q Consensus       248 ~a~a~-~~l~~--~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (372)
                      +|.++ ...|+  +++|+..++++++++|++.   .++..++.+....+++.+ ....|++++......+.+.
T Consensus       113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~---~al~~LA~~~~~~g~~~~-Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        113 LATVLYYQAGQHMTPQTREMIDKALALDANEV---TALMLLASDAFMQADYAQ-AIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCCccHH
Confidence            99985 67787  5999999999999999999   999999999988888854 5567778777666654443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.02  E-value=4.8e-09  Score=87.44  Aligned_cols=97  Identities=12%  Similarity=-0.076  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL  286 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~  286 (372)
                      +.++|.++..+|+|++|+.+|++++.    ++|.+..+++.+|.++..+|++++|+..|.++++++|++.   .++..++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~---~a~~~lg   99 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP---EPVYQTG   99 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHH
Confidence            55789999999999999999999998    9999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         287 KADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                      .+....++..+ ....|........
T Consensus       100 ~~l~~~g~~~e-Ai~~~~~Al~~~p  123 (144)
T PRK15359        100 VCLKMMGEPGL-AREAFQTAIKMSY  123 (144)
T ss_pred             HHHHHcCCHHH-HHHHHHHHHHhCC
Confidence            99888776654 3344444444333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.01  E-value=1.1e-09  Score=82.39  Aligned_cols=83  Identities=22%  Similarity=0.388  Sum_probs=71.3

Q ss_pred             ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368         168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV  247 (372)
Q Consensus       168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r  247 (372)
                      +|+|+.|+..|.+++...+..+   +          ...++++|.||+++|+|++|+..+++ ++    .++.+...++-
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~---~----------~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~~~~~~~~l   63 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP---N----------SAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDPSNPDIHYL   63 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH---H----------HHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHHCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh---h----------HHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCCCCHHHHHH
Confidence            5899999999999999875421   1          45778899999999999999999999 65    78889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q psy8368         248 WGKALIGLQEWTSAIKHLKTA  268 (372)
Q Consensus       248 ~a~a~~~l~~~e~A~~~~~~a  268 (372)
                      +|+|+..+|+|++|+..|++|
T Consensus        64 ~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   64 LARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHhcC
Confidence            999999999999999999875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.01  E-value=7.2e-09  Score=106.69  Aligned_cols=137  Identities=2%  Similarity=-0.101  Sum_probs=121.3

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|......|.+++|...+..++.+.|..               ..++.|+|.++.+++++++|+..|+++|.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            347788899999999999999999999999998776               78999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                          .+|++..+++.+|.++..+|+|++|+..|++++.-+|+++   .++-.++.+.+..++..+ ....|.+.+.....
T Consensus       149 ----~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~---~~~~~~a~~l~~~G~~~~-A~~~~~~a~~~~~~  220 (694)
T PRK15179        149 ----GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE---NGYVGWAQSLTRRGALWR-ARDVLQAGLDAIGD  220 (694)
T ss_pred             ----cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHH-HHHHHHHHHHhhCc
Confidence                9999999999999999999999999999999999999999   999999999888877754 34455555444444

>KOG0553|consensus

Probab=99.00  E-value=9.2e-09  Score=92.86  Aligned_cols=108  Identities=17%  Similarity=0.173  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                      -+-+-|.-+++-++|.+|+..|++||+    ++|.|+--|.+||.||..||+|+.|+++++.|+.+||...   .++..|
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys---kay~RL  155 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS---KAYGRL  155 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH---HHHHHH
Confidence            344678889999999999999999998    9999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHh
Q psy8368         286 LKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVR  321 (372)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
                      ..++..+.++.++... |++.+...+..+.-+...+
T Consensus       156 G~A~~~~gk~~~A~~a-ykKaLeldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEA-YKKALELDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHccCcHHHHHHH-HHhhhccCCCcHHHHHHHH
Confidence            9999999999888777 9998887776543333333

>KOG4555|consensus

Probab=99.00  E-value=1.9e-08  Score=79.80  Aligned_cols=111  Identities=18%  Similarity=0.150  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      .++....+--+|..+...|+.+.|++.|.++|.++|..               .+.|+|+|+++.-.|+..+|+.+.++|
T Consensus        39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn~A  103 (175)
T KOG4555|consen   39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLNKA  103 (175)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHHHH
Confidence            46777888889999999999999999999999999876               699999999999999999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +++.....-.-..+|..+|..|..+|+-+.|..+|..|.++-...+
T Consensus       104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            9843222222456899999999999999999999999999877644

>KOG0547|consensus

Probab=99.00  E-value=6e-09  Score=99.19  Aligned_cols=105  Identities=19%  Similarity=0.239  Sum_probs=97.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.-.|..+|-.|++..|...+..+|.+.+..               .++|..+|..|+...+-.+-..++.+|.+
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~---------------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~  388 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF---------------NSLYIKRAAAYADENQSEKMWKDFNKAED  388 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc---------------chHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence            457888899999999999999999999999987665               46799999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          +||.|+..||.||+.++-+++|++|+.+|++|..|+|.|.
T Consensus       389 ----ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  389 ----LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             ----cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence                9999999999999999999999999999999999999987

>TIGR00115 tig trigger factor

Probab=98.99  E-value=1.1e-07  Score=93.16  Aligned_cols=85  Identities=19%  Similarity=0.295  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP  107 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip  107 (372)
                      .+..||.|+++|+++. + |+.++++.  .. ++.|.+|.+.+++||+.+|.||++|++..|.+++...|+..+.     
T Consensus       146 ~~~~gD~V~v~~~~~~-d-g~~~~~~~--~~-~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-D-GEAFEGGK--AE-NFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE-C-CEECcCCC--CC-CeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence            4788999999999976 3 45787763  34 8999999999999999999999999999999998887876543     


Q ss_pred             CCCcEEEEEEEEeee
Q psy8368         108 AKADLLFEVHLINFS  122 (372)
Q Consensus       108 ~~~~~~~~iel~~~~  122 (372)
                      +|.++.|.|+|.+|.
T Consensus       216 ~gk~~~f~v~i~~I~  230 (408)
T TIGR00115       216 AGKEATFKVTVKEVK  230 (408)
T ss_pred             CCCeEEEEEEEEEec
Confidence            688999999999998

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG1173|consensus

Probab=98.99  E-value=4e-09  Score=101.97  Aligned_cols=120  Identities=20%  Similarity=0.188  Sum_probs=95.9

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+++.|-.+|..+.|.+|+.+|+.++...+....       +.. ...++++|+|.+|.+++.|.+||.+++++|.    
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-------e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~----  483 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-------EKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL----  483 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-------ccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH----
Confidence            3456666777777777777777777744322110       000 2357899999999999999999999999997    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +.|.++.++.-+|.+|..+|+++.|++.|.+||.++|+|.   .+...|+.+-..
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~---~~~~lL~~aie~  535 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI---FISELLKLAIED  535 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH---HHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998   777777765443

>KOG1155|consensus

Probab=98.98  E-value=5.6e-09  Score=98.81  Aligned_cols=125  Identities=13%  Similarity=0.079  Sum_probs=110.7

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      -.||-|-.+++.++|+..|++|+++.+..               ..++.-+|.=|..+++-..|+..|++|++    ++|
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~---------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p  395 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKY---------------LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INP  395 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcch---------------hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCc
Confidence            46899999999999999999999998776               68899999999999999999999999998    999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                      .+.+|||-+|++|.-++...=|+-+|++|+++-|+|+   -++..|+.|..++....++. +.|++.+
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---Rlw~aLG~CY~kl~~~~eAi-KCykrai  459 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---RLWVALGECYEKLNRLEEAI-KCYKRAI  459 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999   89999999998877765544 4455443

>KOG0624|consensus

Probab=98.97  E-value=8.7e-09  Score=94.24  Aligned_cols=117  Identities=14%  Similarity=0.093  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|+.++..|+|..|+.+|-.|+...+..               ...++.+|.+|+.+|+-.-|+.+++++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            457888999999999999999999999999987654               57889999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                          +.|+..-|...||.+++++|++++|..+|+.+|..+|++....++...+..+
T Consensus       101 ----lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  101 ----LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             ----cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence                9999999999999999999999999999999999999887333444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.97  E-value=1.3e-08  Score=87.12  Aligned_cols=109  Identities=17%  Similarity=0.059  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ...+..+...|..++..|+|.+|+..|.+|+.+.+...            ....++.|+|.+|.++|++++|+.+|.+++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35788999999999999999999999999998853210            114589999999999999999999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHFATKDVKLFFVWGKALI-------GLQEWT-------SAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~-------~l~~~e-------~A~~~~~~al~l~p~~~  276 (372)
                      .    ++|.+..+++.+|.+|.       .+|+++       +|+..+++++..+|.+.
T Consensus       100 ~----~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        100 E----RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             H----hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            8    89999999999999999       777776       55666667788888765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.97  E-value=1.2e-08  Score=88.70  Aligned_cols=137  Identities=11%  Similarity=0.013  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC-------------hHHHHHHHH------HHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN-------------YEDQMQLEE------YLCRVYRNLMVC  213 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------l~~~l~~Nla~~  213 (372)
                      ..+......|-.|+..|++..|..-.++||+..+.....+             +...+..+.      -...++||.|.-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            4566666777777777777777777777777654432111             001111111      114689999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         214 YNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      ++..|+|++|..++++|+.     +|.   ..+.+-++|.|.+..|+++.|..+|+++++++|+++   .....+.....
T Consensus       113 LC~qg~~~eA~q~F~~Al~-----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~---~~~l~~a~~~~  184 (250)
T COG3063         113 LCAQGRPEEAMQQFERALA-----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP---PALLELARLHY  184 (250)
T ss_pred             HHhCCChHHHHHHHHHHHh-----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC---hHHHHHHHHHH
Confidence            9999999999999999994     555   678999999999999999999999999999999999   88877777776


Q ss_pred             HHHHHHH
Q psy8368         291 GNQQYQK  297 (372)
Q Consensus       291 ~~~~~~~  297 (372)
                      ...++-.
T Consensus       185 ~~~~y~~  191 (250)
T COG3063         185 KAGDYAP  191 (250)
T ss_pred             hcccchH
Confidence            6666643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.97  E-value=2.3e-08  Score=88.37  Aligned_cols=121  Identities=16%  Similarity=0.080  Sum_probs=82.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..++..|++.+|+..|.+++...+..               ...+.++|.++...|+|++|+..+.+++... 
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-  129 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-  129 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-
Confidence            445556666677777777777777776654332               3466777777778888888888888777511 


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                       ..+.....++.+|.++...|++++|...|.+++..+|++.   .+...+..+....+++.
T Consensus       130 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       130 -LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP---ESLLELAELYYLRGQYK  186 (234)
T ss_pred             -ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh---HHHHHHHHHHHHcCCHH
Confidence             1244566777778888888888888888888888887777   66666666666555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.94  E-value=3.4e-09  Score=76.38  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=61.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQF  233 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~  233 (372)
                      +..+...|..++..|+|.+|+..|.+|+++.+..               ..+++|+|.||.++| +|.+|+.+++++++ 
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK-   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH-
Confidence            6788999999999999999999999999997654               689999999999999 79999999999998 


Q ss_pred             hccCCC
Q psy8368         234 ASHFAT  239 (372)
Q Consensus       234 ~~~~~p  239 (372)
                         ++|
T Consensus        67 ---l~P   69 (69)
T PF13414_consen   67 ---LDP   69 (69)
T ss_dssp             ---HST
T ss_pred             ---cCc
Confidence               776

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.94  E-value=1.6e-08  Score=104.76  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=86.5

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhhccC
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKL----TCDCASKALQFASHF  237 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~----Ai~~~~~aL~~~~~~  237 (372)
                      |..++..|++.+|+..|.+++...+..               ..+++++|.+|..+|++.+    |+..|+++++    +
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l  279 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----F  279 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----h
Confidence            555666677777777777766654332               4677788888888888875    7888888887    7


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      +|++..++..+|.++..+|++++|+..++++++++|++.   .++..++.+....+++.+
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---YVRAMYARALRQVGQYTA  336 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHH
Confidence            888888888888888888888888888888888888888   777777777666655543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.94  E-value=2.7e-08  Score=82.94  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +..+.....|-.+|.+|++.+|...|+-...+.+..               ...+..+|.|+..+++|++|+..|..+.-
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788999999999999999998877764443               56789999999999999999999999996


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          ++++++...|+.|.||+.+|+.+.|+.+|..|+. .|.+.
T Consensus       100 ----l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        100 ----LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             ----cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence                8999999999999999999999999999999999 56665

>PRK12370 invasion protein regulator; Provisional

Probab=98.94  E-value=2.3e-08  Score=101.68  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=86.8

Q ss_pred             HHHHHHHhhHH--HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         154 RAQELGASGKN--AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       154 ~~~~~k~~Gn~--~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      .+..+...++.  +...+++.+|+..+++|+.+.|..               ..++.++|.++...|++++|+..+++++
T Consensus       301 La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al  365 (553)
T PRK12370        301 LAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---------------PQALGLLGLINTIHSEYIVGSLLFKQAN  365 (553)
T ss_pred             HHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45555555542  235677899999999999886655               5678888999999999999999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +    ++|+++.+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus       366 ~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        366 L----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             H----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            7    8999999999999999999999999999999999999887

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.93  E-value=3.8e-08  Score=86.99  Aligned_cols=133  Identities=12%  Similarity=0.121  Sum_probs=107.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|++++|+..++++++
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~   93 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---------------YLAYLALALYYQQLGELEKAEDSFRRALT   93 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            346778889999999999999999999999875443               46888999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA--AKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                          .+|.+..+++++|.++...|++++|+..|.+++...  |...   .+...++.+....++..+ ....+.+.+.
T Consensus        94 ----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~-A~~~~~~~~~  163 (234)
T TIGR02521        94 ----LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPA---RSLENAGLCALKAGDFDK-AEKYLTRALQ  163 (234)
T ss_pred             ----hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccch---HHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence                889999999999999999999999999999999864  3344   556666666655555543 3333444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.92  E-value=2.6e-08  Score=106.35  Aligned_cols=101  Identities=11%  Similarity=0.099  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.|+|.++.++|++++|+..+++++.    ++|+++.+++++|.++..+|++++|+..|++|++++|+++   .++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~---~a~~  681 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP---ALIR  681 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHH
Confidence            36789999999999999999999999998    9999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .++.+....++...+. ..+.+.+....+
T Consensus       682 nLA~al~~lGd~~eA~-~~l~~Al~l~P~  709 (987)
T PRK09782        682 QLAYVNQRLDDMAATQ-HYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence            9999999888876544 456666554443

>KOG1155|consensus

Probab=98.91  E-value=4.2e-08  Score=92.97  Aligned_cols=131  Identities=21%  Similarity=0.178  Sum_probs=117.0

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+--.|..|...++-..|+..|++|+++.|..               ...++.+|++|--++.+.=|+-++++|+. 
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~-  426 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---------------YRAWYGLGQAYEIMKMHFYALYYFQKALE-  426 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---------------HHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence            34566678999999999999999999999998765               68899999999999999999999999997 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                         +.|++...|.-+|.||.++++.++|+.+|.+|+.....+.   .+.-.|+++.+++++..++. +.|.+.+
T Consensus       427 ---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~---~~l~~LakLye~l~d~~eAa-~~yek~v  493 (559)
T KOG1155|consen  427 ---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG---SALVRLAKLYEELKDLNEAA-QYYEKYV  493 (559)
T ss_pred             ---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch---HHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence               9999999999999999999999999999999999999988   89999999999998886554 3444443

>PRK12370 invasion protein regulator; Provisional

Probab=98.90  E-value=2.7e-08  Score=101.13  Aligned_cols=70  Identities=14%  Similarity=-0.009  Sum_probs=35.8

Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         218 KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       218 ~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      +++.+|+..++++++    ++|++..++..+|.++..+|++++|+..|++|++++|+++   .++..++.+....++
T Consensus       318 ~~~~~A~~~~~~Al~----ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~G~  387 (553)
T PRK12370        318 NAMIKAKEHAIKATE----LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---DIKYYYGWNLFMAGQ  387 (553)
T ss_pred             hHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC
Confidence            445555555555554    5555555555555555555555555555555555555555   444444444443333

>KOG1126|consensus

Probab=98.89  E-value=1.6e-08  Score=99.64  Aligned_cols=122  Identities=12%  Similarity=0.092  Sum_probs=81.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .-.++.-.|..|.++++|+.|..+|++|+.+.|..               ..+..-+|..+.++|+.++|+..+++|+. 
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---------------svi~~~~g~~~~~~k~~d~AL~~~~~A~~-  551 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---------------SVILCHIGRIQHQLKRKDKALQLYEKAIH-  551 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc---------------hhHHhhhhHHHHHhhhhhHHHHHHHHHHh-
Confidence            34555566666666666666666666666665443               34445566667777777777777777775 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                         +||.|+-..|.+|.++..+++|++|+..|+...++.|++.   .+...++++.++++....
T Consensus       552 ---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es---~v~~llgki~k~~~~~~~  609 (638)
T KOG1126|consen  552 ---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES---SVFALLGKIYKRLGNTDL  609 (638)
T ss_pred             ---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH---HHHHHHHHHHHHHccchH
Confidence               7777777777777777777777777777777777777777   777777777666665543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.89  E-value=3e-08  Score=81.26  Aligned_cols=114  Identities=11%  Similarity=0.023  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc
Q psy8368         176 RRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL  255 (372)
Q Consensus       176 ~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l  255 (372)
                      ..|.+++...+..               .....++|.++++.++|.+|+..+++++.    .+|.+..+++++|.++..+
T Consensus         4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~~~   64 (135)
T TIGR02552         4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNSRYWLGLAACCQML   64 (135)
T ss_pred             hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHH
Confidence            3566777665443               46688999999999999999999999997    8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         256 QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       256 ~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      |++++|+..|+++++++|.+.   ..+..++.+....+++.. ....+.+.+...+.
T Consensus        65 ~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~  117 (135)
T TIGR02552        65 KEYEEAIDAYALAAALDPDDP---RPYFHAAECLLALGEPES-ALKALDLAIEICGE  117 (135)
T ss_pred             HHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCCHHH-HHHHHHHHHHhccc
Confidence            999999999999999999999   999999998887776544 33455655554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK01490 tig trigger factor; Provisional

Probab=98.89  E-value=5.5e-07  Score=88.89  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=72.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP  107 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip  107 (372)
                      .+..||.|+++|++.. + |+.|+++.  .. ++.|.+|.+.+++||+.+|.||++|++..|.++....|+....     
T Consensus       157 ~~~~gD~V~vd~~~~~-~-g~~~~~~~--~~-~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----  226 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-D-GEEFEGGK--AE-DFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----  226 (435)
T ss_pred             cCCCCCEEEEEEEEEE-C-CEECcCCC--CC-ceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence            3789999999999987 3 45777753  34 8999999999999999999999999999999988777766443     


Q ss_pred             CCCcEEEEEEEEeee
Q psy8368         108 AKADLLFEVHLINFS  122 (372)
Q Consensus       108 ~~~~~~~~iel~~~~  122 (372)
                      +|.++.|.|+|.++.
T Consensus       227 agk~~~f~v~v~~V~  241 (435)
T PRK01490        227 AGKEATFKVTVKEVK  241 (435)
T ss_pred             CCCeEEEEEEEEEec
Confidence            678999999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.86  E-value=1.5e-08  Score=74.89  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      ....+++|+|.+|..+|+|++|+.++++++++.....++   -+.+++++|.+|..+|++++|++++++|+++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            347899999999999999999999999999876556544   36689999999999999999999999999874

...

>KOG1125|consensus

Probab=98.86  E-value=6.8e-09  Score=100.69  Aligned_cols=99  Identities=19%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      ..--.|-.|+-.|+|++|+.+|+.||..-|..               ..+++.+|..+..-.+..+||..|++||+    
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---------------~~lWNRLGAtLAN~~~s~EAIsAY~rALq----  492 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---------------YLLWNRLGATLANGNRSEEAISAYNRALQ----  492 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---------------HHHHHHhhHHhcCCcccHHHHHHHHHHHh----
Confidence            34467889999999999999999999986655               68999999999999999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      +.|..+.+.|++|.+|+.+|.|.+|..+|..||.+.+.
T Consensus       493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999887

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.85  E-value=3e-07  Score=83.41  Aligned_cols=156  Identities=12%  Similarity=0.142  Sum_probs=122.4

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|++.+...|..+            ......+++|.+|+++++|.+|+..+++.++  
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--   97 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--   97 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Confidence            55577899999999999999999999999876542            2245678999999999999999999999998  


Q ss_pred             ccCCCCc---hhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKD---VKLFFVWGKALIGLQ---------------E---WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       235 ~~~~p~~---~ka~~r~a~a~~~l~---------------~---~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                        ..|++   ..++|.+|.++..++               +   ...|+..|+..++.-|+.....+++..+..++.++.
T Consensus        98 --~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866         98 --LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             --hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence              66664   558999999976654               1   357889999999999999888889999999988887


Q ss_pred             HHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhccCC
Q psy8368         294 QYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQV  330 (372)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (372)
                      ...-...+.|-+    .+....+...++..+..-|..
T Consensus       176 ~~e~~ia~~Y~~----~~~y~AA~~r~~~v~~~Yp~t  208 (243)
T PRK10866        176 KYELSVAEYYTK----RGAYVAVVNRVEQMLRDYPDT  208 (243)
T ss_pred             HHHHHHHHHHHH----cCchHHHHHHHHHHHHHCCCC
Confidence            776655554544    223334666677666666654

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.83  E-value=5.7e-08  Score=90.96  Aligned_cols=112  Identities=13%  Similarity=0.005  Sum_probs=93.5

Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368         169 KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW  248 (372)
Q Consensus       169 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~  248 (372)
                      +..+.++..+.++|...+..+           ......|+++|.+|..+|++.+|+.+++++++    ++|+++.+|+.+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~l  104 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDMADAYNYL  104 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCHHHHHHH
Confidence            356677888888886432211           11256799999999999999999999999998    999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       249 a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      |.+|..+|++++|+..|+++++++|++.   .++..++.+....+.+.++
T Consensus       105 g~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        105 GIYLTQAGNFDAAYEAFDSVLELDPTYN---YAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999   8888888877666555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.82  E-value=8.8e-08  Score=99.26  Aligned_cols=133  Identities=12%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             HHHHHHhhHHHHhccCHHH----HHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVS----AVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      ...+...|..++..|++.+    |+..|++++...|..               ..++.++|.++.++|++++|+..++++
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------------VRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3456678999999999986    899999999987654               678999999999999999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                      +.    ++|++..+++.+|.+|..+|++++|+..|++++..+|++.   .+...+..+....++.. .....|.+.....
T Consensus       311 l~----l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~---~~~~~~a~al~~~G~~d-eA~~~l~~al~~~  382 (656)
T PRK15174        311 LA----THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS---KWNRYAAAALLQAGKTS-EAESVFEHYIQAR  382 (656)
T ss_pred             HH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC
Confidence            98    8999999999999999999999999999999999999987   65555555555555443 3334455554443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.81  E-value=2e-07  Score=102.77  Aligned_cols=127  Identities=12%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..+++.|++++|+..|+++++..+...... .-...+......+..++|.++++.|++++|+..|+++++  
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~--  379 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ--  379 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            45667788888899999999999999888765432110 001111222234556778999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+..+.
T Consensus       380 --~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~---~a~~~L~~l~  429 (1157)
T PRK11447        380 --VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT---NAVRGLANLY  429 (1157)
T ss_pred             --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Confidence              9999999999999999999999999999999999999998   7777666654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.81  E-value=2.6e-08  Score=72.53  Aligned_cols=69  Identities=19%  Similarity=0.336  Sum_probs=63.2

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368         211 MVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL  286 (372)
Q Consensus       211 a~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~  286 (372)
                      ...|++.++|.+|+.++++++.    ++|+++.+++.+|.+|..+|++.+|+.+|.++++++|++.   .+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~---~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE----LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP---DARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH---HHHHHHH
Confidence            5678999999999999999998    9999999999999999999999999999999999999998   5554433

>KOG0550|consensus

Probab=98.80  E-value=1.6e-08  Score=94.63  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      +-...++..+.+||.++++..|.+|+..|+.||+.++..               +..|.|+|.+++.+++|++|+.++++
T Consensus        44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~~dar~  108 (486)
T KOG0550|consen   44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEALGDARQ  108 (486)
T ss_pred             hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcccchhh
Confidence            346789999999999999999999999999999998776               68899999999999999999998887


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHH
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSA  261 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A  261 (372)
                      .++    ++|...+++.|.++|+..+++..+|
T Consensus       109 ~~r----~kd~~~k~~~r~~~c~~a~~~~i~A  136 (486)
T KOG0550|consen  109 SVR----LKDGFSKGQLREGQCHLALSDLIEA  136 (486)
T ss_pred             hee----cCCCccccccchhhhhhhhHHHHHH
Confidence            776    6555555555555555544444333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.80  E-value=3.4e-08  Score=91.62  Aligned_cols=122  Identities=19%  Similarity=0.097  Sum_probs=98.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|+.+.+.|++.+|+..|++|++..|..               ..+..+++.+++..|++.++...+....+  
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~---------------~~~~~~l~~~li~~~~~~~~~~~l~~~~~--  208 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDD---------------PDARNALAWLLIDMGDYDEAREALKRLLK--  208 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHHHHH--
Confidence            4567789999999999999999999999997765               56788899999999999998888888886  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                        ..|+++..+..+|.+|..+|++++|+..|+++++.+|+|+   .+...++.+....+...++
T Consensus       209 --~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~---~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  209 --AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP---LWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             --H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H---HHHHHHHHHHT--------
T ss_pred             --HCcCHHHHHHHHHHHhcccccccccccccccccccccccc---ccccccccccccccccccc
Confidence              5577888889999999999999999999999999999999   9999999888887776544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.79  E-value=1.3e-07  Score=83.92  Aligned_cols=122  Identities=19%  Similarity=0.180  Sum_probs=110.4

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+++.|+|..|+..+.++...-+..               ..+++-+|.||.++|+++.|...|.++++   
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~---  162 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD---------------WEAWNLLGAALDQLGRFDEARRAYRQALE---  162 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC---------------hhhhhHHHHHHHHccChhHHHHHHHHHHH---
Confidence            345559999999999999999999999986554               67899999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                       +.|+++.++-++|..|+-.|+++.|...+..+...-+.+.   .+...|..+..........+
T Consensus       163 -L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~---~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         163 -LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS---RVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             -hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch---HHHHHHHHHHhhcCChHHHH
Confidence             9999999999999999999999999999999999999899   89999998888777665544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.79  E-value=3.3e-07  Score=80.96  Aligned_cols=156  Identities=10%  Similarity=0.053  Sum_probs=116.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|++.+...|..+.            ...+.+.+|.++++.++|..|+..+++.++ 
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-   70 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIK-   70 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            3678889999999999999999999999998876531            145778999999999999999999999998 


Q ss_pred             hccCCCCc---hhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKD---VKLFFVWGKALIGLQ-----------EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       234 ~~~~~p~~---~ka~~r~a~a~~~l~-----------~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                         ..|++   ..|+|.+|.+++.+.           ...+|+..|+..+..-|+......+...+..++..+....-..
T Consensus        71 ---~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i  147 (203)
T PF13525_consen   71 ---LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI  147 (203)
T ss_dssp             ---H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence               55664   458999999987653           3458999999999999999988889999998888877665544


Q ss_pred             HHHHHhhccCCCCCCcchHHHhhhhhhccC
Q psy8368         300 KARCMKMFSSSSSPSQHSNVVRIAYQEHEQ  329 (372)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (372)
                      ...|-+    .+....+...++..+..-|.
T Consensus       148 a~~Y~~----~~~y~aA~~r~~~v~~~yp~  173 (203)
T PF13525_consen  148 ARFYYK----RGKYKAAIIRFQYVIENYPD  173 (203)
T ss_dssp             HHHHHC----TT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHH----cccHHHHHHHHHHHHHHCCC
Confidence            433333    23333455556666655554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.76  E-value=2e-08  Score=72.09  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=61.8

Q ss_pred             HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      +++.|+|++|+..+++++.    .+|++..+++.+|.||+.+|++++|...+.+++..+|+++   .++..++++
T Consensus         1 ll~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~---~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP---EYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH---HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH---HHHHHHhcC
Confidence            3678999999999999998    9999999999999999999999999999999999999998   777776653

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.76  E-value=2.1e-07  Score=85.14  Aligned_cols=104  Identities=10%  Similarity=-0.056  Sum_probs=88.8

Q ss_pred             HHHHhhHHH-HhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         157 ELGASGKNA-FNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       157 ~~k~~Gn~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      .....+-.+ ++.|+|.+|+..|...+...|....            ...+++-+|.+|+..|+|++|+..+..+++   
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~---  208 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVK---  208 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence            334455554 5679999999999999999876531            135788999999999999999999999997   


Q ss_pred             cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       ..|+   ...+++++|.++..+|++++|+..|+++++..|+..
T Consensus       209 -~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        209 -NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             -HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence             5555   677999999999999999999999999999999988

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.76  E-value=2.2e-07  Score=75.83  Aligned_cols=106  Identities=11%  Similarity=0.157  Sum_probs=94.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|...++.|+|..|+..++......|..+-.            ....++++-+|++.++|.+|+..+++-++  
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFir--   75 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIR--   75 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence            5678889999999999999999999988887765422            35778999999999999999999999998  


Q ss_pred             ccCCCCchh---HHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhcCCCc
Q psy8368         235 SHFATKDVK---LFFVWGKALIGLQE---------------WTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       235 ~~~~p~~~k---a~~r~a~a~~~l~~---------------~e~A~~~~~~al~l~p~~~  276 (372)
                        ++|++.+   |+|++|.+++.+..               ...|+.+|++.+..-|++.
T Consensus        76 --LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   76 --LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             --hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence              8888766   89999999999987               8899999999999999987

>PLN02789 farnesyltranstransferase

Probab=98.76  E-value=8e-07  Score=83.75  Aligned_cols=116  Identities=6%  Similarity=-0.059  Sum_probs=95.3

Q ss_pred             HHHHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY--KLTCDCASKA  230 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y--~~Ai~~~~~a  230 (372)
                      ..+.+..+|..+...| .+.+|+..+.+++...++.               ..++++++.++.+++.+  .+++.+++++
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------------yqaW~~R~~~l~~l~~~~~~~el~~~~ka  134 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------------YQIWHHRRWLAEKLGPDAANKELEFTRKI  134 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------------hHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence            3456667777777777 5788888888888776655               56788899888888874  7889999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      |+    .+|.|..||..++.++..+|+|++|++++.++++++|.|.   .++.....+...
T Consensus       135 l~----~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~---sAW~~R~~vl~~  188 (320)
T PLN02789        135 LS----LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN---SAWNQRYFVITR  188 (320)
T ss_pred             HH----hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch---hHHHHHHHHHHh
Confidence            97    9999999999999999999999999999999999999998   877777766543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.76  E-value=4e-07  Score=79.41  Aligned_cols=125  Identities=15%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.-||.-|+..|++..|..-.++||+    .||++..+|.-+|..|..+|+.+.|.+.|++|++++|+|.   ++.+
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G---dVLN  107 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG---DVLN  107 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc---chhh
Confidence            46677889999999999999999999998    9999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-------------------ccCCCCCCcchHHHhhhhhhccCCCccccc
Q psy8368         284 EILKADLGNQQYQKETKARCMKM-------------------FSSSSSPSQHSNVVRIAYQEHEQVRPATLQ  336 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (372)
                      ..+--.-..+.+.+... .+.+.                   .-+.+...++..-+++++...|+..+..++
T Consensus       108 NYG~FLC~qg~~~eA~q-~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~  178 (250)
T COG3063         108 NYGAFLCAQGRPEEAMQ-QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE  178 (250)
T ss_pred             hhhHHHHhCCChHHHHH-HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence            99887777775554433 33332                   222233445777788888888876654443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.75  E-value=5e-07  Score=81.38  Aligned_cols=128  Identities=9%  Similarity=-0.002  Sum_probs=105.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc--------cCHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN--------KQYKLTCDCA  227 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl--------~~y~~Ai~~~  227 (372)
                      ..+...|..++..|++.+|+..|.++++..|..+..            ...++++|.|+.++        +++.+|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            456788999999999999999999999987654311            23678889999876        8999999999


Q ss_pred             HHHHHhhccCCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         228 SKALQFASHFATKDVKLF-----------------FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       228 ~~aL~~~~~~~p~~~ka~-----------------~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      +++++    .+|++..++                 +.+|.+|...|++.+|+..|.+++...|+++..+.++..+..+..
T Consensus       139 ~~~~~----~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~  214 (235)
T TIGR03302       139 QELIR----RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL  214 (235)
T ss_pred             HHHHH----HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence            99998    788876442                 467889999999999999999999998877544578888888888


Q ss_pred             HHHHHHHHH
Q psy8368         291 GNQQYQKET  299 (372)
Q Consensus       291 ~~~~~~~~~  299 (372)
                      ..+++.+..
T Consensus       215 ~lg~~~~A~  223 (235)
T TIGR03302       215 KLGLKDLAQ  223 (235)
T ss_pred             HcCCHHHHH
Confidence            887776554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.74  E-value=1.5e-07  Score=78.11  Aligned_cols=101  Identities=8%  Similarity=0.042  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ....+.+|.-++..|++++|...++.+..    +||.+...|+++|.|+..+|+|++|+..|.+|+.++|+|+   ....
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---~~~~  107 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---QAPW  107 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHH
Confidence            45667789999999999999999999997    9999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .++.|.-.+++.. ..++.++.....+..
T Consensus       108 ~ag~c~L~lG~~~-~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        108 AAAECYLACDNVC-YAIKALKAVVRICGE  135 (157)
T ss_pred             HHHHHHHHcCCHH-HHHHHHHHHHHHhcc
Confidence            9999998888764 455566665555543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.71  E-value=3.3e-07  Score=97.25  Aligned_cols=133  Identities=14%  Similarity=0.071  Sum_probs=92.1

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+.+.|++.+|+..|.+++...+..               ..+++++|.+|.++|++.+|+..++++++   
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~---  798 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---------------AVLRTALAELYLAQKDYDKAIKHYRTVVK---  798 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH---
Confidence            345567777788888888888888877765433               45667777777777777777777777776   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                       .+|+++.++.++|.++..+|+ .+|+..+++++.+.|+++   .+...++.+....++..+ ....+++++.....
T Consensus       799 -~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~-A~~~~~~a~~~~~~  869 (899)
T TIGR02917       799 -KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP---AILDTLGWLLVEKGEADR-ALPLLRKAVNIAPE  869 (899)
T ss_pred             -hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCC
Confidence             677777777777777777777 667777777777777777   666666666655555533 33456666555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.70  E-value=3.6e-07  Score=94.30  Aligned_cols=118  Identities=7%  Similarity=0.004  Sum_probs=102.3

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+......++.+++.+++++|+..+++++...+..               ...++++|.|+.++|+|++|+..|++++. 
T Consensus       119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-  182 (694)
T PRK15179        119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------------AREILLEAKSWDEIGQSEQADACFERLSR-  182 (694)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHh-
Confidence            45777899999999999999999999999997766               68899999999999999999999999997 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                         .+|++.++++.+|.++..+|+.++|...|++|+....+-.  ......+.++...+
T Consensus       183 ---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~  236 (694)
T PRK15179        183 ---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA--RKLTRRLVDLNADL  236 (694)
T ss_pred             ---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch--HHHHHHHHHHHHHH
Confidence               8899999999999999999999999999999999876543  13344455544433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.69  E-value=3.7e-07  Score=96.44  Aligned_cols=113  Identities=13%  Similarity=0.080  Sum_probs=102.3

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+...|++.+|+..|++++...|..               ..++.++|.++...+++.+|+..++++++   
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~---  111 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---------------DDYQRGLILTLADAGQYDEALVKAKQLVS---  111 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence            347889999999999999999999999986654               46778999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                       .+|++.. ++.+|.++...|++++|+..|+++++++|++.   .+...+..+...
T Consensus       112 -~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---~~~~~la~~l~~  162 (765)
T PRK10049        112 -GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ---QYPTEYVQALRN  162 (765)
T ss_pred             -hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Confidence             8999999 99999999999999999999999999999999   877777766543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.69  E-value=3.5e-07  Score=97.07  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=98.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|...|.+++...+..               ...+..+|.+++..|+|.+|+..++++++ 
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~-  187 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS---------------LYAKLGLAQLALAENRFDEARALIDEVLT-  187 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence            45677889999999999999999999999876543               35677888888888888888888888887 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                         .+|.+..+++.+|.++..+|++++|+..|++++.++|++.   .+...+..+....+++.
T Consensus       188 ---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~~~~~~~~~g~~~  244 (899)
T TIGR02917       188 ---ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP---AVLLALATILIEAGEFE  244 (899)
T ss_pred             ---hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHH
Confidence               7888888888888888888888888888888888888887   76666666655554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.68  E-value=5e-07  Score=87.54  Aligned_cols=146  Identities=11%  Similarity=0.034  Sum_probs=95.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------CChHHHHHHHH-----------HHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------TNYEDQMQLEE-----------YLCRVYRNLM  211 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~-----------l~~~l~~Nla  211 (372)
                      ..+...|..++..|+|..|+..|.+++...+....             ..++.......           ....++.++|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34556677777777777777777776653211100             00000000000           1234667888


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      .++.+.+++++|+.+++++++    .+|++..+++.+|.+|...|++++|+..|.+++..+|.+.  ..+...+..+...
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~l~~~~~~  261 (389)
T PRK11788        188 QQALARGDLDAARALLKKALA----ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL--SEVLPKLMECYQA  261 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHh----HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH--HHHHHHHHHHHHH
Confidence            888899999999999999987    7888888999999999999999999999999998888763  1455666666665


Q ss_pred             HHHHHHHHHHHHHhhcc
Q psy8368         292 NQQYQKETKARCMKMFS  308 (372)
Q Consensus       292 ~~~~~~~~~~~~~~~~~  308 (372)
                      .++..+. ...+.++..
T Consensus       262 ~g~~~~A-~~~l~~~~~  277 (389)
T PRK11788        262 LGDEAEG-LEFLRRALE  277 (389)
T ss_pred             cCCHHHH-HHHHHHHHH
Confidence            5555443 334555443

>PLN02789 farnesyltranstransferase

Probab=98.67  E-value=1.1e-06  Score=82.71  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=99.1

Q ss_pred             HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhccCCCCchh
Q psy8368         165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQFASHFATKDVK  243 (372)
Q Consensus       165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~~~~~~p~~~k  243 (372)
                      +...+++.+|+..+.++|.+.+..               ..++++++.++.+++ .+.+++..++++++    .+|+|..
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npknyq  107 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKNYQ  107 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcchH
Confidence            556789999999999999997765               689999999999999 68999999999998    9999999


Q ss_pred             HHHHHHHHHHhcCCH--HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         244 LFFVWGKALIGLQEW--TSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       244 a~~r~a~a~~~l~~~--e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      +|+.++.++..++..  ++++..+.++++++|+|.   .++....-+...++.+.+
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy---~AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY---HAWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhHHH
Confidence            999999999999874  788999999999999999   888888888777776654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.66  E-value=8.8e-07  Score=85.80  Aligned_cols=129  Identities=8%  Similarity=-0.029  Sum_probs=98.2

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..++..|++.+|+..|.+++...+..               ...+..+|.+|.+.|++++|+..+++++.    
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~----  242 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEE----  242 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence            34567777778888888888888888765432               45778899999999999999999999997    


Q ss_pred             CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         237 FATKD-VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       237 ~~p~~-~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                      .+|.+ ..++..++.+|..+|++++|+..+++++++.|++.   .+ ..+..+....++..+ ....+.+++..
T Consensus       243 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~---~~-~~la~~~~~~g~~~~-A~~~l~~~l~~  311 (389)
T PRK11788        243 QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD---LL-LALAQLLEEQEGPEA-AQALLREQLRR  311 (389)
T ss_pred             HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---HH-HHHHHHHHHhCCHHH-HHHHHHHHHHh
Confidence            67775 45788999999999999999999999999999876   44 556666555554432 33444444433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.66  E-value=3.8e-07  Score=100.58  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=108.4

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..|..++..|++.+|+..|++++...+..               ..++.++|.+|+++|++++|+.+++++++    .+|
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p  334 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKD---------------SEALGALGQAYSQQGDRARAVAQFEKALA----LDP  334 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence            45889999999999999999999986654               57899999999999999999999999998    778


Q ss_pred             Cchh--------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368         240 KDVK--------------LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       240 ~~~k--------------a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      ++..              .+..+|.++...|++++|+..|+++++++|++.   .+...++.+....+++.++. ..|.+
T Consensus       335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~---~a~~~Lg~~~~~~g~~~eA~-~~y~~  410 (1157)
T PRK11447        335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS---YAVLGLGDVAMARKDYAAAE-RYYQQ  410 (1157)
T ss_pred             CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHH-HHHHH
Confidence            7643              224568899999999999999999999999999   89989999888877765443 45666


Q ss_pred             hccCCCC
Q psy8368         306 MFSSSSS  312 (372)
Q Consensus       306 ~~~~~~~  312 (372)
                      .+.....
T Consensus       411 aL~~~p~  417 (1157)
T PRK11447        411 ALRMDPG  417 (1157)
T ss_pred             HHHhCCC
Confidence            5544433

>KOG1840|consensus

Probab=98.66  E-value=6.8e-07  Score=88.37  Aligned_cols=146  Identities=16%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..++..|..|...++|.+|+..|.+|+.+.......+.       ...+.++.|+|..|.+.|+|.+|..+|++|++
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h-------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~  311 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH-------PAVAATLNNLAVLYYKQGKFAEAEEYCERALE  311 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            44566677999999999999999999999999865433322       23478999999999999999999999999999


Q ss_pred             hhcc----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASH----FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA-----AKDSVRAEIDKEILKADLGNQQYQKETKARC  303 (372)
Q Consensus       233 ~~~~----~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  303 (372)
                      +...    ..|.-...+...+..+..++++++|+..+++++++-     ++|...+.+...|+.+...++++.+++ .++
T Consensus       312 I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~~  390 (508)
T KOG1840|consen  312 IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-ELY  390 (508)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HHH
Confidence            8765    233455577889999999999999999999999864     345456688899999999988887654 344


Q ss_pred             Hhh
Q psy8368         304 MKM  306 (372)
Q Consensus       304 ~~~  306 (372)
                      +++
T Consensus       391 k~a  393 (508)
T KOG1840|consen  391 KKA  393 (508)
T ss_pred             HHH
Confidence            444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.64  E-value=4.9e-07  Score=67.21  Aligned_cols=93  Identities=16%  Similarity=0.191  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                      +++++|.++...|++.+|+..+.++++    ..|.+..+++.+|.++...+++++|+..|.+++.+.|.+.   .+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~   74 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNL   74 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHH
Confidence            578899999999999999999999998    8898889999999999999999999999999999999998   888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy8368         286 LKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      ..+....++.... ...+...
T Consensus        75 ~~~~~~~~~~~~a-~~~~~~~   94 (100)
T cd00189          75 GLAYYKLGKYEEA-LEAYEKA   94 (100)
T ss_pred             HHHHHHHHhHHHH-HHHHHHH
Confidence            8888777765443 3334443

>KOG1310|consensus

Probab=98.61  E-value=1.3e-07  Score=90.93  Aligned_cols=123  Identities=14%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHH
Q psy8368         148 FAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN---KQYKLTC  224 (372)
Q Consensus       148 ~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl---~~y~~Ai  224 (372)
                      |-++.+.++.++.+||..|..+....|+..|.++++..+..               ..+|.|+|.++++.   ++...|+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHH
Confidence            55778999999999999999999999999999999987655               78999999999985   4788999


Q ss_pred             HHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         225 DCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       225 ~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      .+|..||+    ++|...||+|+++.|+..++++.+|+.+...+....|.+.   +......-+.+.+
T Consensus       432 rDch~Alr----ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~---a~~~~v~~l~rDi  492 (758)
T KOG1310|consen  432 RDCHVALR----LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV---ARQNFVLCLPRDI  492 (758)
T ss_pred             HhHHhhcc----CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh---hhhhhhhccccch
Confidence            99999998    9999999999999999999999999999988888889776   4444444333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.61  E-value=4.7e-07  Score=86.90  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL  286 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~  286 (372)
                      +...|..++..++|.+|+..|+++|+    ++|++..+|+.+|.+|..+|++++|+.++.+|+.++|++.   .++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a~~~lg   77 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAID----LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KAYLRKG   77 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HHHHHHH
Confidence            45678999999999999999999998    9999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         287 KADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .+...++++..+. ..|.+.+.....
T Consensus        78 ~~~~~lg~~~eA~-~~~~~al~l~P~  102 (356)
T PLN03088         78 TACMKLEEYQTAK-AALEKGASLAPG  102 (356)
T ss_pred             HHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence            9988888876544 445555554444

>KOG2076|consensus

Probab=98.60  E-value=1.8e-06  Score=87.92  Aligned_cols=136  Identities=13%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...||.+|..|+++.|...+..+|+..+..               ...|.-+|.||-.+|+..+|+.....|-.
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~---------------~~ay~tL~~IyEqrGd~eK~l~~~llAAH  201 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN---------------PIAYYTLGEIYEQRGDIEKALNFWLLAAH  201 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc---------------hhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            347889999999999999999999999999998766               45666777777777777777777766664


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                          ++|.+..-|.+++.....+|+++.|+-+|.+|++.+|.|-   ...-.-..+.++.+..+ .+...|.++|...+
T Consensus       202 ----L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~---~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  202 ----LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW---ELIYERSSLYQKTGDLK-RAMETFLQLLQLDP  272 (895)
T ss_pred             ----cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHhChHH-HHHHHHHHHHhhCC
Confidence                7777777777777777777777777777777777777776   66666666666665553 33445555555555

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.57  E-value=1e-06  Score=69.98  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI  281 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~  281 (372)
                      ..++++|..+.+.|+|.+|+..|.++++    .+|++   ..+++.+|.++...|++++|+..|++++..+|++.....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   78 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA   78 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence            4678999999999999999999999997    66765   6799999999999999999999999999999987422267


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         282 DKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                      +..++.+....++..+ ....+..++...
T Consensus        79 ~~~~~~~~~~~~~~~~-A~~~~~~~~~~~  106 (119)
T TIGR02795        79 LLKLGMSLQELGDKEK-AKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHHHHHhCChHH-HHHHHHHHHHHC
Confidence            7777777766555433 334455554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.56  E-value=2.6e-07  Score=88.71  Aligned_cols=64  Identities=16%  Similarity=0.017  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL---FFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka---~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      ...++|+|.+|+++|+|++|+..|++||+    ++|++..+   ||++|.||..+|++++|+.+|++|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            67899999999999999999999999998    99999865   999999999999999999999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.55  E-value=4.5e-07  Score=66.89  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=60.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|..++..|+|++|+..|++|+.+......        .....+.+++|+|.||..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35788999999999999999999999999999543321        1123378999999999999999999999999997


Q ss_pred             h
Q psy8368         233 F  233 (372)
Q Consensus       233 ~  233 (372)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            3

...

>KOG2003|consensus

Probab=98.55  E-value=2.9e-07  Score=87.10  Aligned_cols=121  Identities=16%  Similarity=0.143  Sum_probs=104.8

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+-+.||..|..|++++|...|+.||.-....               ...++|+|+.+-++|+.++|+.++-+.-.   
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~---  552 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHA---  552 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHH---
Confidence            456688999999999999999999999754333               67889999999999999999999988764   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                       +--+|+..++.+|.+|..+.+...|++.|.++..+-|+++   .+...|+.+..+-++..++
T Consensus       553 -il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp---~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  553 -ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP---AILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             -HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH---HHHHHHHHHhhcccchhhh
Confidence             3357899999999999999999999999999999999999   9999999988766554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.54  E-value=2.5e-07  Score=65.68  Aligned_cols=64  Identities=13%  Similarity=0.152  Sum_probs=57.0

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..|..++..|+|++|+..|++++...+..               ..++..+|.|+..+|+|++|+..++++++    .+|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~----~~P   62 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALE----LDP   62 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HST
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCc
Confidence            57899999999999999999999987654               68999999999999999999999999998    888


Q ss_pred             Cch
Q psy8368         240 KDV  242 (372)
Q Consensus       240 ~~~  242 (372)
                      +++
T Consensus        63 ~~p   65 (65)
T PF13432_consen   63 DNP   65 (65)
T ss_dssp             T-H
T ss_pred             CCC
Confidence            874

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.53  E-value=1.3e-06  Score=74.68  Aligned_cols=83  Identities=10%  Similarity=-0.024  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ..+++++|.++..+++|++|+..+++++.    +.|+   .+-+++++|.+|..+|++++|+..|++|+.++|.+.   .
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~---~  107 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR----LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP---Q  107 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---H
Confidence            68899999999999999999999999997    5444   345899999999999999999999999999999998   8


Q ss_pred             HHHHHHHHHHHHH
Q psy8368         281 IDKEILKADLGNQ  293 (372)
Q Consensus       281 ~~~~l~~~~~~~~  293 (372)
                      .+..+..+...+.
T Consensus       108 ~~~~la~i~~~~~  120 (168)
T CHL00033        108 ALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777777776443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.50  E-value=1.9e-06  Score=91.08  Aligned_cols=102  Identities=13%  Similarity=0.035  Sum_probs=95.4

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+...|++++|+..+.+++...|..               ..++.++|.++...|++++|+..+++++.   
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~---  421 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------QGLRIDYASVLQARGWPRAAENELKKAEV---  421 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Confidence            345678889999999999999999999987665               57899999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       ++|++..+++.+|.+++.++++++|...++++++..|+++
T Consensus       422 -l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        422 -LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             -hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence             9999999999999999999999999999999999999999

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.49  E-value=1.7e-06  Score=72.11  Aligned_cols=98  Identities=12%  Similarity=-0.009  Sum_probs=71.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      .......|..++..|+|++|+..|.+++...+..            .+...+.+++|.+++.+|+|++|+..++.+-   
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---  112 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQIP---  112 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---
Confidence            4556667888888888888888888888753111            1234567778888888888888888886532   


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                        -.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus       113 --~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  113 --DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             --CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence              334456677788888888888888888888774

>KOG1129|consensus

Probab=98.47  E-value=4.3e-07  Score=82.88  Aligned_cols=146  Identities=14%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc------------CCChH-HHHHHHHHH------HHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ------------VTNYE-DQMQLEEYL------CRVYRNLMVCYN  215 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~------------~~~~~-~~~~~~~l~------~~l~~Nla~~~~  215 (372)
                      ++-+...+.++-..+++++|++.|+.+++.-+..-            ....+ ...-.++++      ..+++|+|.|++
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            44556788888889999999999999998754321            11111 111222222      469999999999


Q ss_pred             HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      --++|+-++..+.+|+..++ .+..-+..||++|.+....|++.-|..+|+-||.-||++.   ++...|+-+..+.++.
T Consensus       370 yaqQ~D~~L~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~---ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG---EALNNLAVLAARSGDI  445 (478)
T ss_pred             hhcchhhhHHHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH---HHHHhHHHHHhhcCch
Confidence            99999999999999997441 2233677899999999999999999999999999999999   9999999888776554


Q ss_pred             HHHHHHHHHh
Q psy8368         296 QKETKARCMK  305 (372)
Q Consensus       296 ~~~~~~~~~~  305 (372)
                      . ..+..++.
T Consensus       446 ~-~Arsll~~  454 (478)
T KOG1129|consen  446 L-GARSLLNA  454 (478)
T ss_pred             H-HHHHHHHH
Confidence            3 33444443

>KOG1125|consensus

Probab=98.45  E-value=3.8e-06  Score=81.94  Aligned_cols=95  Identities=21%  Similarity=0.215  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .++.-||..|.-.++|++|+.+++.||.    .+|++...|-|+|..+..-.+.++|+..|++|++|.|+..   -++..
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV---R~RyN  503 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV---RVRYN  503 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHh----cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee---eeehh
Confidence            4677789999999999999999999998    9999999999999999999999999999999999999999   89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q psy8368         285 ILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      |+-.-.-++.|+++.+.....+
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHH
Confidence            9999999999998887776654

>KOG4162|consensus

Probab=98.45  E-value=1.6e-06  Score=86.90  Aligned_cols=104  Identities=14%  Similarity=0.083  Sum_probs=87.1

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD--CASKAL  231 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~--~~~~aL  231 (372)
                      .+..++..|..+..+|++.+|...|..|+.+.|..               +.+...+|.|+++.|+-.-|..  ....++
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h---------------v~s~~Ala~~lle~G~~~la~~~~~L~dal  747 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH---------------VPSMTALAELLLELGSPRLAEKRSLLSDAL  747 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence            35667788888888888888988888888886665               5677788888888888777777  888888


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +    +||.|.+|||.+|.++..+|+.++|.++|.-|+++++.++
T Consensus       748 r----~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  748 R----LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             h----hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            7    8899999999999999999999999999999999888887

>KOG2002|consensus

Probab=98.45  E-value=3.9e-06  Score=86.18  Aligned_cols=118  Identities=11%  Similarity=0.035  Sum_probs=102.2

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...+|-+|-.|+|..+...+.-|+....            ...+.+..++++|.||..+|+|++|..+|.++++   
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---  335 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---  335 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---
Confidence            3455678888888888888888888887642            2234466799999999999999999999999998   


Q ss_pred             cCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         236 HFATKD-VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       236 ~~~p~~-~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                       .+|++ .-+++.+|+.|+..|+++.|..+|.++++..|++.   +....|+.+....
T Consensus       336 -~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~---etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  336 -ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY---ETMKILGCLYAHS  389 (1018)
T ss_pred             -cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH---HHHHHHHhHHHhh
Confidence             88887 88999999999999999999999999999999999   9998888887665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.43  E-value=2.5e-06  Score=73.16  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ..+++++|.++...|+|++|+.+|+++++    ..|+   ...+++.+|.+|..+|++++|+..|.+++.++|++.   .
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~  107 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALK----LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP---S  107 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Confidence            67899999999999999999999999997    5444   357999999999999999999999999999999998   8


Q ss_pred             HHHHHHHHHHHHHH
Q psy8368         281 IDKEILKADLGNQQ  294 (372)
Q Consensus       281 ~~~~l~~~~~~~~~  294 (372)
                      ....++.+...++.
T Consensus       108 ~~~~lg~~~~~~g~  121 (172)
T PRK02603        108 ALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHHHHcCC
Confidence            87777777665543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.42  E-value=7.9e-07  Score=63.62  Aligned_cols=67  Identities=12%  Similarity=0.124  Sum_probs=57.7

Q ss_pred             HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhH
Q psy8368         165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL  244 (372)
Q Consensus       165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka  244 (372)
                      +++.|+|.+|+..|++++...|..               ..++.++|.||++.|++++|...+.+++.    .+|+++..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~   61 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEY   61 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHH
Confidence            467899999999999999998776               68888999999999999999999999997    88888766


Q ss_pred             HHHHHH
Q psy8368         245 FFVWGK  250 (372)
Q Consensus       245 ~~r~a~  250 (372)
                      +.-+++
T Consensus        62 ~~l~a~   67 (68)
T PF14559_consen   62 QQLLAQ   67 (68)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            655554

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.40  E-value=7.1e-06  Score=73.02  Aligned_cols=97  Identities=16%  Similarity=0.128  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .++.-.+..++..|+|..|+..+.++..    +.|+++++|.-+|.+|..+|++++|...|.+++++.|+++   .+...
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nN  173 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANN  173 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc---hhhhh
Confidence            3455588899999999999999999997    9999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         285 ILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      +.-..-..++.+.+++-.......
T Consensus       174 lgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         174 LGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhC
Confidence            998888777777666555544433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.39  E-value=6e-06  Score=69.72  Aligned_cols=100  Identities=13%  Similarity=0.023  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhhccCCCC
Q psy8368         171 IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN----------KQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       171 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl----------~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      |+.|.+.|.......|..               ...++|-|.+++.|          ..+++|+.-+++||.    ++|+
T Consensus         7 FE~ark~aea~y~~nP~D---------------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~   67 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD---------------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPN   67 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT
T ss_pred             HHHHHHHHHHHHHhCcHh---------------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCc
Confidence            566777777766664433               56677777777665          347888999999997    9999


Q ss_pred             chhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         241 DVKLFFVWGKALIGLQE-----------WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       241 ~~ka~~r~a~a~~~l~~-----------~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      ...|++.+|.||..++.           |+.|..+|++|...+|+|.   ..++.|....+.-
T Consensus        68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne---~Y~ksLe~~~kap  127 (186)
T PF06552_consen   68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE---LYRKSLEMAAKAP  127 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H---HHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHhhH
Confidence            99999999999998764           7899999999999999999   8888887775433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.39  E-value=4.4e-06  Score=72.35  Aligned_cols=106  Identities=15%  Similarity=0.060  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +++.-++++|+.|=..|-...|--.|.+++.+.|.-               ..+++-+|..+...|+|+.|.+.++-+++
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---------------~~vfNyLG~Yl~~a~~fdaa~eaFds~~E  127 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE  127 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---------------HHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence            458888999999999999999999999999987765               68899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCcc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSV  277 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~  277 (372)
                          +||.+--|+.+||.+++--|+|.-|.+++.+-.+-||+|+.
T Consensus       128 ----LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         128 ----LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ----cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence                99999999999999999999999999999999999999983

>KOG1840|consensus

Probab=98.37  E-value=9.8e-06  Score=80.27  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=90.2

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ......|..|+.+|+|+.|+..+++|++.+......       .+........++|..|..+++|.+|+..|.+||.+.+
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            334449999999999999999999999996443221       1122345666799999999999999999999998765


Q ss_pred             ----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         236 ----HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       236 ----~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                          ..+|.-+-++.++|.+|...|+|.+|..++++|+++-
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence                3456677789999999999999999999999999874

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.37  E-value=7.3e-06  Score=86.28  Aligned_cols=152  Identities=9%  Similarity=-0.044  Sum_probs=105.6

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC-------------ChHHHHHHHHHH------HHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT-------------NYEDQMQLEEYL------CRVYRNLMVCY  214 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~l~------~~l~~Nla~~~  214 (372)
                      .+......+-..+++|+|..|+..|.++++..+..+..             .+.....++...      ...+..+|.+|
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45677889999999999999999999999887765211             000111111111      22333446688


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      ..+|+|++|+..++++++    .+|+|+.+++-++.+|...++.++|+..++++...+|.+.   .. ..+..+......
T Consensus       113 ~~~gdyd~Aiely~kaL~----~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~-l~layL~~~~~~  184 (822)
T PRK14574        113 RNEKRWDQALALWQSSLK----KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NY-MTLSYLNRATDR  184 (822)
T ss_pred             HHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HH-HHHHHHHHhcch
Confidence            888888888888888887    8888888888888888888888888888888888888876   44 344444433333


Q ss_pred             HHHHHHHHHHhhccCCCCCC
Q psy8368         295 YQKETKARCMKMFSSSSSPS  314 (372)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~  314 (372)
                      ..+ +-..|++++...+...
T Consensus       185 ~~~-AL~~~ekll~~~P~n~  203 (822)
T PRK14574        185 NYD-ALQASSEAVRLAPTSE  203 (822)
T ss_pred             HHH-HHHHHHHHHHhCCCCH
Confidence            323 6677777777666543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.34  E-value=1.2e-05  Score=72.35  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      +...+.+-.+++.|+|..|...|..-++-+|.....            ...++=||.|++.+|+|.+|...+..+.+   
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---  206 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVK---  206 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHH---
Confidence            448889999999999999999999999988776433            35778899999999999999999999998   


Q ss_pred             cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       -.|+   -+.++|.+|.+...+|+.++|...|+++.+--|+..
T Consensus       207 -~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         207 -DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             -hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence             4455   455799999999999999999999999999999998

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.6e-05  Score=72.40  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN---KQYKLTCDCASKA  230 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl---~~y~~Ai~~~~~a  230 (372)
                      .++.+--.|..|+..|++..|...|.+|+++.+..               ..++.-+|.+++-.   ..-.++...++++
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n---------------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a  219 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN---------------PEILLGLAEALYYQAGQQMTAKARALLRQA  219 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            35677789999999999999999999999998766               45666667665543   3478899999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      |+    .||+|+.+++-+|..++..|+|.+|...++..+.+.|.+.
T Consensus       220 l~----~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         220 LA----LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             Hh----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            98    9999999999999999999999999999999999999876

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=2.1e-05  Score=75.65  Aligned_cols=130  Identities=12%  Similarity=-0.042  Sum_probs=103.9

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      -.+..++..|+++.|...+...+...|.+               ..+..-++..+++.++.++|++.+++++.    ++|
T Consensus       311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N---------------~~~~~~~~~i~~~~nk~~~A~e~~~kal~----l~P  371 (484)
T COG4783         311 GRALQTYLAGQYDEALKLLQPLIAAQPDN---------------PYYLELAGDILLEANKAKEAIERLKKALA----LDP  371 (484)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC
Confidence            34445555555555555555544444433               45666788999999999999999999997    999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                      +..-..+++|.+|++.|++.+|+..++..+.-+|+|+   ..+..|+.....+++..+.....-..+|-...
T Consensus       372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp---~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP---NGWDLLAQAYAELGNRAEALLARAEGYALAGR  440 (484)
T ss_pred             CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999   99999999999998887766655555554333

>KOG2002|consensus

Probab=98.30  E-value=8.6e-06  Score=83.72  Aligned_cols=131  Identities=12%  Similarity=0.101  Sum_probs=111.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      .+.+.+.|-.+|..|.|..|...+..|+..+......++.     +...+++.+|+|.|+-.++++..|-..|..+++  
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-----~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--  524 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-----KSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--  524 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-----ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence            4677899999999999999999999999885322111110     223367899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                        ..|..+.+|.|+|......++..+|...++.++.++..|+   .++..++.+.........
T Consensus       525 --ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np---~arsl~G~~~l~k~~~~~  582 (1018)
T KOG2002|consen  525 --EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP---NARSLLGNLHLKKSEWKP  582 (1018)
T ss_pred             --HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc---HHHHHHHHHHHhhhhhcc
Confidence              9999999999999777888999999999999999999999   999999988776665543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.30  E-value=4.5e-06  Score=60.55  Aligned_cols=70  Identities=11%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      .+.++..++|..|+..+.+++...|..               ..++.++|.||.++|+|.+|+.+++++++    ..|++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~----~~p~~   62 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD---------------PELWLQRARCLFQLGRYEEALEDLERALE----LSPDD   62 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc---------------chhhHHHHHHHHHhccHHHHHHHHHHHHH----HCCCc
Confidence            467899999999999999999997765               68899999999999999999999999998    89988


Q ss_pred             hhHHHHHHH
Q psy8368         242 VKLFFVWGK  250 (372)
Q Consensus       242 ~ka~~r~a~  250 (372)
                      ..+..-++.
T Consensus        63 ~~~~~~~a~   71 (73)
T PF13371_consen   63 PDARALRAM   71 (73)
T ss_pred             HHHHHHHHh
Confidence            877665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.29  E-value=1.2e-05  Score=77.36  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=98.0

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..+..++..++..+|.+.+++++...|..               ..+..|+|.+|++.|++.+|+...+..+.    .+|
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~---------------~~l~~~~a~all~~g~~~eai~~L~~~~~----~~p  405 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNS---------------PLLQLNLAQALLKGGKPQEAIRILNRYLF----NDP  405 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCc---------------cHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCC
Confidence            46778889999999999999999998775               57889999999999999999999999997    999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      +++..|..+|++|..+|+-.+|...+...+.+..+-.   .+...+..++++.
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~---~A~~~l~~A~~~~  455 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLE---QAIIFLMRASQQV  455 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHhc
Confidence            9999999999999999999999999998888888776   6666666655544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.27  E-value=2.1e-05  Score=63.09  Aligned_cols=98  Identities=18%  Similarity=0.049  Sum_probs=81.3

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      ..++.|..+-..|+..+|+..|++|+..-...            ..+..++.++|.+|..+|++++|+..+++++.    
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----   66 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALE----   66 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence            46778888999999999999999999852111            12245788999999999999999999999997    


Q ss_pred             CCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         237 FATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       237 ~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      ..|+   +.....-++.++..+|++++|+..+..++.
T Consensus        67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5466   777788899999999999999999988774

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.26  E-value=1.3e-05  Score=73.41  Aligned_cols=104  Identities=8%  Similarity=-0.049  Sum_probs=84.7

Q ss_pred             HHHHHHHHHH-HHccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         205 RVYRNLMVCY-NNNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       205 ~l~~Nla~~~-~kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ...++.|.++ ++.++|++|+..|+..++    ..|++   +.++|++|.+|+.+|+|++|+..|.++++..|+++...+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            4567788876 678999999999999998    77886   579999999999999999999999999999999876667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368         281 IDKEILKADLGNQQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      +...++.+....++. ...+..|.++....+..
T Consensus       219 Al~klg~~~~~~g~~-~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        219 AMFKVGVIMQDKGDT-AKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCC
Confidence            887788887766544 45566677666555543

>KOG2076|consensus

Probab=98.23  E-value=1.6e-05  Score=81.11  Aligned_cols=102  Identities=14%  Similarity=0.084  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ....-+++.+..+...|+|..|+..|...+.......              ..++.++|.||..+|.|++|+.+|.++|.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--------------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--------------AFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--------------hhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4567888999999999999999999988886643321              57899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                          .+|++..+...++..|..+|+.++|++.+....--|
T Consensus       478 ----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  478 ----LAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             ----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence                999999999999999999999999999999876334

>KOG1130|consensus

Probab=98.23  E-value=1.7e-06  Score=81.28  Aligned_cols=116  Identities=15%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      .+..+..++-+.||.||-.|+|+.|+...+.-|.+......         +.....++.|+|+||+-+|+++.|+++|..
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            45567778889999999999999999999998887644321         112246899999999999999999999999


Q ss_pred             HHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         230 ALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       230 aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      ++.++-.+...  .+...|-+|.+|.-+.+|+.|+.++++-|.+...
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98766555555  4456899999999999999999999999888654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.22  E-value=2e-05  Score=73.21  Aligned_cols=115  Identities=11%  Similarity=0.044  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhHHHHhc-cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFND-KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ..+..+.+.|..+... |+++.|+..|.+|+.++....         .......++.++|.++.++++|++|+..++++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4577888999999998 999999999999999986542         122336789999999999999999999999998


Q ss_pred             HhhccC--CCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHF--ATKDVK-LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~--~p~~~k-a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ......  ..-+++ .+++.+.|++..|++..|...|++....+|...
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            622100  011444 457889999999999999999999999999765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.21  E-value=2.2e-06  Score=52.38  Aligned_cols=34  Identities=18%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      +++|+++|.+|..+|++++|+.+|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.21  E-value=0.00019  Score=56.32  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc--
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS--  235 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~--  235 (372)
                      -...|...+..|-|.+|...|++|+.+....|....   -.-.-.-.-||.-++.++..||+|++++...+.+|.++.  
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa---FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA---FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh---cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            345677788899999999999999998766543221   112223367899999999999999999999999997653  


Q ss_pred             -cCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         236 -HFATK----DVKLFFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       236 -~~~p~----~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                       .++.+    .+.+.|++|.++..+|+.++|+..|+.+-+.
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence             24444    4568899999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.20  E-value=1.1e-05  Score=74.65  Aligned_cols=132  Identities=17%  Similarity=0.101  Sum_probs=95.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+......+...+++..+...+.++.....   .+.+          ..++.-+|.++.+.|++++|+.+++++|+   
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~---  174 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPA---APDS----------ARFWLALAEIYEQLGDPDKALRDYRKALE---  174 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T------T-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccC---CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence            3444555667788899998888888764321   1111          56788999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                       .+|++..+...++.++...|+++++...+....+..|+|+   .++..++.+...++++.+ ....+.+...
T Consensus       175 -~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~---~~~~~la~~~~~lg~~~~-Al~~~~~~~~  242 (280)
T PF13429_consen  175 -LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP---DLWDALAAAYLQLGRYEE-ALEYLEKALK  242 (280)
T ss_dssp             -H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC---CHCHHHHHHHHHHT-HHH-HHHHHHHHHH
T ss_pred             -cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH---HHHHHHHHHhcccccccc-cccccccccc
Confidence             9999999999999999999999999999999999889998   888888888888777653 3444555444

>KOG1174|consensus

Probab=98.18  E-value=1.1e-05  Score=76.02  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=99.6

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+.-+|+.+...++.++|+..|+.|+.+.|..               ..+|-.+-.||+..+++.+|....+.+++.
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            34567788999999999999999999998886543               455555556666655555555444444431


Q ss_pred             hc--------------------------------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368         234 AS--------------------------------HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI  281 (372)
Q Consensus       234 ~~--------------------------------~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~  281 (372)
                      +.                                .+.|...+|-..+|..+..-|.+++++..++++|...|+..    .
T Consensus       398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----L  473 (564)
T KOG1174|consen  398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----L  473 (564)
T ss_pred             hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----H
Confidence            10                                15677778888888888888888888888888888888765    6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHh
Q psy8368         282 DKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVR  321 (372)
Q Consensus       282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
                      +..|+.+......+. .....|+..++..++......-.+
T Consensus       474 H~~Lgd~~~A~Ne~Q-~am~~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  474 HNHLGDIMRAQNEPQ-KAMEYYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             HHHHHHHHHHhhhHH-HHHHHHHHHHhcCccchHHHHHHH
Confidence            667777666655553 344566666666665533333333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.17  E-value=4.2e-06  Score=62.71  Aligned_cols=76  Identities=16%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         217 NKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       217 l~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      .++|+.|+..+++++.    .+|.  +...++.+|.||+.+|+|++|+..+++ ++.+|.+.   .++..++++.-.+++
T Consensus         2 ~~~y~~Ai~~~~k~~~----~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE----LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---DIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHH----HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---HHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHH----HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---HHHHHHHHHHHHhCC
Confidence            5899999999999998    6664  566788899999999999999999999 99999998   889999999999988


Q ss_pred             HHHHHH
Q psy8368         295 YQKETK  300 (372)
Q Consensus       295 ~~~~~~  300 (372)
                      +.++..
T Consensus        74 y~eAi~   79 (84)
T PF12895_consen   74 YEEAIK   79 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876554

>KOG1128|consensus

Probab=98.17  E-value=8e-06  Score=81.68  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=92.3

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      ....|+-.+..++|.+|..+++.++.+.+-.               ...++++|.|.+++++++.|..+|.+++.    +
T Consensus       488 ~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvt----L  548 (777)
T KOG1128|consen  488 QRSLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVT----L  548 (777)
T ss_pred             HHhhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhh----c
Confidence            3445555667788888888888888775433               67899999999999999999999999997    9


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      +|+|..+|.+++.+|+.++.-.+|...+..|++.+-++-   .++.+...+....+
T Consensus       549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w---~iWENymlvsvdvg  601 (777)
T KOG1128|consen  549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW---QIWENYMLVSVDVG  601 (777)
T ss_pred             CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC---eeeechhhhhhhcc
Confidence            999999999999999999999999999999999987765   44444444433333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.16  E-value=3.5e-05  Score=74.33  Aligned_cols=68  Identities=24%  Similarity=0.360  Sum_probs=59.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|+.|++.|+|++|+..|++||.+.+...     .       ...+|+|+|.||.++|++++|+.++++|++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-----e-------A~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-----E-------AQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----H-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999976541     0       014699999999999999999999999997

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.16  E-value=3.5e-05  Score=71.65  Aligned_cols=147  Identities=13%  Similarity=0.090  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      -+.+..+...||.|-..|+|.+|...|.+|..........         ......|.+.+.||.+. ++.+|+.++++|+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKG-DPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence            3567888888999999999999999999999887543211         11256788888898777 9999999999999


Q ss_pred             HhhccCC-CC-chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368         232 QFASHFA-TK-DVKLFFVWGKALIGL-QEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       232 ~~~~~~~-p~-~~ka~~r~a~a~~~l-~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      +++...+ +. -.+++.++|.+|... ++++.|++.|++|+.+-..+.   ....+...++.+..+.+++.++ ...|.+
T Consensus       102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A-~~~~e~  180 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA-IEIYEE  180 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH-HHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH-HHHHHH
Confidence            8764333 22 466888999999998 999999999999998743221   3345667777777777777554 445555


Q ss_pred             hccC
Q psy8368         306 MFSS  309 (372)
Q Consensus       306 ~~~~  309 (372)
                      +...
T Consensus       181 ~~~~  184 (282)
T PF14938_consen  181 VAKK  184 (282)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.15  E-value=0.00026  Score=58.80  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      ....+...+......+..+++..+...+...+.-.+..+            .-....+.+|.+++..|+|++|+..++.+
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345677777777777788999988887877776654431            12456778999999999999999999999


Q ss_pred             HHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         231 LQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCM  304 (372)
Q Consensus       231 L~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  304 (372)
                      +.    ..|+   ...+.+|+|.+++.+|+|++|+..+..+    +++.....+...++.+....++..+ .+..|.
T Consensus        75 ~~----~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~-A~~~y~  142 (145)
T PF09976_consen   75 LA----NAPDPELKPLARLRLARILLQQGQYDEALATLQQI----PDEAFKALAAELLGDIYLAQGDYDE-ARAAYQ  142 (145)
T ss_pred             Hh----hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHH-HHHHHH
Confidence            97    4444   2568999999999999999999999662    2222233677777777777666543 334443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.15  E-value=3.7e-05  Score=81.04  Aligned_cols=115  Identities=11%  Similarity=0.035  Sum_probs=91.3

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      |..+...|+|.+|+..|+++++..|..               ..++.-++..|..++++.+|+..+.+++.    .+|.+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n---------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~  169 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTN---------------PDLISGMIMTQADAGRGGVVLKQATELAE----RDPTV  169 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcch
Confidence            556667899999999999999987665               35556779999999999999999999997    88874


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                      ... .-++.++...+++.+|+..|+++++++|++.   ++..++-.+....+....+.
T Consensus       170 ~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~---e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        170 QNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE---EVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHH
Confidence            443 3445555557777779999999999999999   88888777776665554333

>KOG1173|consensus

Probab=98.13  E-value=1.8e-05  Score=77.22  Aligned_cols=140  Identities=17%  Similarity=0.085  Sum_probs=104.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHH-------------HHHHH------HHHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQ-------------MQLEE------YLCRVYRNLMVCYN  215 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~-------------~~~~~------l~~~l~~Nla~~~~  215 (372)
                      +..+...|..+...+..++|+..|..|-++++....|.--..             .-+..      .-.-+++-+|.+.+
T Consensus       346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            566778899999999999999999999988876543321000             00000      00235666888888


Q ss_pred             HccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      +.+.|.+|+.++..+|...+...+..   .-.+.++|-+|.+++.|++|+.++++||.+.|.+.   .++..++-+...+
T Consensus       426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~---~~~asig~iy~ll  502 (611)
T KOG1173|consen  426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA---STHASIGYIYHLL  502 (611)
T ss_pred             hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHh
Confidence            89999999999999996444444432   23478999999999999999999999999999999   8888888877776


Q ss_pred             HHHHH
Q psy8368         293 QQYQK  297 (372)
Q Consensus       293 ~~~~~  297 (372)
                      +....
T Consensus       503 gnld~  507 (611)
T KOG1173|consen  503 GNLDK  507 (611)
T ss_pred             cChHH
Confidence            65543

>TIGR00540 hemY_coli hemY protein

Probab=98.12  E-value=0.00016  Score=70.83  Aligned_cols=124  Identities=11%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      +.+++......|-..+..|+|..|.....++.+..+..               ...+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---------------~~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---------------VLNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45678888899999999999999999999988775432               234445566666677777777777776


Q ss_pred             HHhhccCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         231 LQFASHFATKDV-KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       231 L~~~~~~~p~~~-ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      .+    ..|++. -+....+..+...|+++.|+..+++.++..|+++   .+...+..+....++..
T Consensus       145 ~~----~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~---~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       145 AE----LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK---EVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HH----hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHH
Confidence            65    445543 2333356667777777777777777777777776   66666666655555553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.12  E-value=0.00017  Score=70.48  Aligned_cols=125  Identities=9%  Similarity=0.019  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      +.+++......|-..+..|+|..|.+...++-...+..               ...+...+.+..+.|+++.|..++.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p---------------~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP---------------VVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45678888899999999999999997666655432110               223444456668899999999999999


Q ss_pred             HHhhccCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         231 LQFASHFATKDVK-LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       231 L~~~~~~~p~~~k-a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      .+    .+|++.- .....+..+...|+++.|+..++++.+.+|+++   .+...+..+....++...
T Consensus       145 ~~----~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~---~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        145 AE----LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP---EVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             Hh----cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHH
Confidence            87    7777643 344568899999999999999999999999998   888888887777666544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.11  E-value=5e-05  Score=79.71  Aligned_cols=130  Identities=10%  Similarity=-0.049  Sum_probs=91.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+....+.+...+++++|+.....++...+..               ..+|+-+|..|++.+++.++...  .++..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---------------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---------------ISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---------------eehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            34556667778888999999999999999887665               45555666666666655555444  33331


Q ss_pred             hcc---------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASH---------------FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       234 ~~~---------------~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      ...               ..+.+-.|++.+|.||-.+|++++|...|+++++++|+|+   .+.+.++-.....  .-++
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~---~aLNn~AY~~ae~--dL~K  167 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP---EIVKKLATSYEEE--DKEK  167 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHh--hHHH
Confidence            100               2244457999999999999999999999999999999999   8888887766665  2333


Q ss_pred             HHHHHHh
Q psy8368         299 TKARCMK  305 (372)
Q Consensus       299 ~~~~~~~  305 (372)
                      ...++.+
T Consensus       168 A~~m~~K  174 (906)
T PRK14720        168 AITYLKK  174 (906)
T ss_pred             HHHHHHH
Confidence            4444444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.10  E-value=3.6e-05  Score=73.55  Aligned_cols=100  Identities=10%  Similarity=-0.041  Sum_probs=85.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..+...|++.+|...|++++...+..               ..++.++|.+|...|++++|+.++.+++.  
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~--  176 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRD--  176 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh--
Confidence            3455567889999999999999999999986654               46788999999999999999999999997  


Q ss_pred             ccCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         235 SHFATK----DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       235 ~~~~p~----~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                        ..|.    ....++.+|.++..+|++++|+..|++++...|
T Consensus       177 --~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         177 --TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             --ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence              5443    234577899999999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=8.4e-06  Score=49.59  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      +++++.+|.+|..+|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3678889999999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.08  E-value=0.0002  Score=59.46  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-----C-CCh-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-----V-TNY-EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-----~-~~~-~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      +...|......++...++..|.+++.++....     . .|- .....++.....+...++.++...|+|++|+..|+++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34456666777899999999999998874432     1 232 3456677788889999999999999999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      +.    .+|-+-.+|..+-.+|...|+..+|+..|.++..
T Consensus        89 l~----~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   89 LA----LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             Hh----cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            98    9999999999999999999999999999998853

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4648|consensus

Probab=98.05  E-value=9.1e-06  Score=74.80  Aligned_cols=86  Identities=13%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VRAEID  282 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~~~~~  282 (372)
                      .--.|+-|+++|.|++||.+|.+++.    ++|.|+-.+.+||.||+++..|..|..++..|+.|+....    ++..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR  175 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR  175 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            34678999999999999999999996    9999999999999999999999999999999999997654    455666


Q ss_pred             HHHHHHHHHHHHHH
Q psy8368         283 KEILKADLGNQQYQ  296 (372)
Q Consensus       283 ~~l~~~~~~~~~~~  296 (372)
                      ..|+.+....++++
T Consensus       176 ~~Lg~~~EAKkD~E  189 (536)
T KOG4648|consen  176 ESLGNNMEAKKDCE  189 (536)
T ss_pred             HHHhhHHHHHHhHH
Confidence            66666655544443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.03  E-value=9e-05  Score=70.81  Aligned_cols=148  Identities=11%  Similarity=0.040  Sum_probs=108.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC------------hHHHHHHHH----------HHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN------------YEDQMQLEE----------YLCRVYRNLMV  212 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~~~~~~~~~----------l~~~l~~Nla~  212 (372)
                      .+.....|..++..|++..|...+.+++...|......            .........          .....+.++|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            34455678899999999999999999998765432100            000000111          11346678899


Q ss_pred             HHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHH
Q psy8368         213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEIDKEILKADLG  291 (372)
Q Consensus       213 ~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~~~  291 (372)
                      ++...|++++|+..++++++    ++|++..++..+|.+|...|++++|+..+.+++...|.+. ......-.+..+...
T Consensus       123 ~~~~~G~~~~A~~~~~~al~----~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALE----LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            99999999999999999998    9999999999999999999999999999999999988654 001123357777777


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy8368         292 NQQYQKETKARCMKMF  307 (372)
Q Consensus       292 ~~~~~~~~~~~~~~~~  307 (372)
                      .+++.+ ....|.+..
T Consensus       199 ~G~~~~-A~~~~~~~~  213 (355)
T cd05804         199 RGDYEA-ALAIYDTHI  213 (355)
T ss_pred             CCCHHH-HHHHHHHHh
Confidence            776654 445666654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.03  E-value=4.5e-05  Score=73.60  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=72.4

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      -.+..++..++-.+|+....+++...+..               ..++.-.|..+++.++|+.|+..++++.+    +.|
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~----lsP  265 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVE----LSP  265 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCc
Confidence            35666666677777777777777554332               46666778888888888888888888887    888


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .+.++|+.+|.+|..+|+|+.|+..++.+-.+.+.+.
T Consensus       266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k  302 (395)
T PF09295_consen  266 SEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDK  302 (395)
T ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccc
Confidence            8888888888888888888888877776654443433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156|consensus

Probab=98.03  E-value=4.9e-05  Score=75.28  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=98.8

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..++.+.-..|..++|.+.+...+..|.-.+..               ...+.-.|..+..+|+-++|..++..+++   
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH---------------geslAmkGL~L~~lg~~~ea~~~vr~glr---   69 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEH---------------GESLAMKGLTLNCLGKKEEAYELVRLGLR---   69 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc---------------chhHHhccchhhcccchHHHHHHHHHHhc---
Confidence            345666677778888888888888877754433               12333457777889999999999999997   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                       .|+.+.-.|.-+|..+..-++|++|+.+|+.|++++|+|.   .+.+.++-++..++++...
T Consensus        70 -~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   70 -NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             -cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhhH
Confidence             8899889999999999999999999999999999999999   9999999998888877643

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.00  E-value=0.0002  Score=71.96  Aligned_cols=118  Identities=16%  Similarity=0.078  Sum_probs=88.2

Q ss_pred             HHHHHHHhhHHHHhccC---HHHHHHHHHHHHHhhhhccC----------------CC-hHHHHHHHH-H----------
Q psy8368         154 RAQELGASGKNAFNDKN---IVSAVRRYRDAVKLLINTQV----------------TN-YEDQMQLEE-Y----------  202 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~---~~~A~~~y~~al~~~~~~~~----------------~~-~~~~~~~~~-l----------  202 (372)
                      .+-.+.-+|..++..+.   +..|+.+|++|++..|....                +. ......... .          
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            35566677888876554   88999999999988755321                00 111111111 0          


Q ss_pred             -HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         203 -LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       203 -~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       ...+|.-+|..+...|++++|...+++|+.    ++| +..+|+.+|+++...|++++|++.|.+|+.++|.++
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~----L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAID----LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence             114466677788888999999999999997    888 578999999999999999999999999999999987

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.99  E-value=0.00015  Score=58.14  Aligned_cols=97  Identities=12%  Similarity=0.036  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .+++++|.++-.+|+..+|+..|++++..- ..++....++..+|.+|..+|++++|+..+++++.-.|++.....+...
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            367899999999999999999999999711 1123357799999999999999999999999999998983322267766


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8368         285 ILKADLGNQQYQKETKAR  302 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~  302 (372)
                      +..+....+..++...-.
T Consensus        81 ~Al~L~~~gr~~eAl~~~   98 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWL   98 (120)
T ss_pred             HHHHHHHCCCHHHHHHHH
Confidence            666666666665544433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00018  Score=66.03  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc-----------c--CCChHHH-----------HHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT-----------Q--VTNYEDQ-----------MQLEEYLCRVYR  208 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~-----------~--~~~~~~~-----------~~~~~l~~~l~~  208 (372)
                      ++.-.+.+.|..|...|-|+.|...|...++.-...           .  ..|...-           ...+-..+.+|+
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            456778889999999999999999887655421000           0  0111100           111223367888


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      -+|..++...+.+.|+....+|++    .+|+++.|-.-+|.+++..|+|+.|++.++.+++-||..-  .++...|..|
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlq----a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~  258 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQ----ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYEC  258 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHh----hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHH
Confidence            888888888999999999999998    9999999999999999999999999999999999999864  4788888888


Q ss_pred             HHHHHHHHHHH
Q psy8368         289 DLGNQQYQKET  299 (372)
Q Consensus       289 ~~~~~~~~~~~  299 (372)
                      ...+++...-.
T Consensus       259 Y~~lg~~~~~~  269 (389)
T COG2956         259 YAQLGKPAEGL  269 (389)
T ss_pred             HHHhCCHHHHH
Confidence            88777665443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=2.1e-05  Score=51.16  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK  287 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~  287 (372)
                      .+++.+|.+|..+|++++|+..|+++++.+|+|.   .++..+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~---~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP---EAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH---HHHHHhhh
Confidence            4677777888888888888888888888888777   77666553

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.95  E-value=0.00016  Score=68.36  Aligned_cols=114  Identities=13%  Similarity=0.185  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC---CChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV---TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~---~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      +....-...|...|++++|..|...|..||.++.+...   +-......+..+..-+...+..||+++++.+-|+.+..+
T Consensus       174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            44455556888999999999999999999999976431   112223344445566778899999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      .+-    ++|.++.-++|.|.|+..|.+|.+|-..+.-|.=
T Consensus       254 sI~----lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  254 SIN----LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhh----cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            996    9999999999999999999999999877766643

>KOG1129|consensus

Probab=97.94  E-value=8.1e-05  Score=68.32  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=60.9

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA  238 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~  238 (372)
                      .+.|..|++.|-+.+|...++.+|...+..                ..+.-++.+|.+..+...|+..+.+.|+    .-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld----~f  286 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLD----SF  286 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhh----cC
Confidence            468999999999999999999999876542                3344445555555555555555555554    44


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      |.++--+.-.|.+|..++++++|++.|+.+++++|.|.
T Consensus       287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv  324 (478)
T KOG1129|consen  287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV  324 (478)
T ss_pred             CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc
Confidence            55555555555555555555555555555555555543

>KOG2003|consensus

Probab=97.92  E-value=0.00034  Score=66.79  Aligned_cols=76  Identities=12%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      +|..|+...-+++||.++++|--    ++|+.+|-....|.|+...|+|..|.+.|+..-+.-|.|.   ++.+.|-++-
T Consensus       632 l~ayyidtqf~ekai~y~ekaal----iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl---dclkflvri~  704 (840)
T KOG2003|consen  632 LAAYYIDTQFSEKAINYFEKAAL----IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL---DCLKFLVRIA  704 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch---HHHHHHHHHh
Confidence            56666667777777777777753    7777777777777777777777777777777777777777   7777766665


Q ss_pred             HHH
Q psy8368         290 LGN  292 (372)
Q Consensus       290 ~~~  292 (372)
                      -.+
T Consensus       705 ~dl  707 (840)
T KOG2003|consen  705 GDL  707 (840)
T ss_pred             ccc
Confidence            443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.92  E-value=0.0011  Score=59.29  Aligned_cols=152  Identities=12%  Similarity=0.101  Sum_probs=114.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+.+.|...++.|+|.+|+..|.......+..+-.            -.....++.++++-++|..|+...++-++  
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--   99 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIR--   99 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Confidence            7788999999999999999999999988776654322            35667889999999999999999999998  


Q ss_pred             ccCCCCchh---HHHHHHHHHHhcC--------CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVK---LFFVWGKALIGLQ--------EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARC  303 (372)
Q Consensus       235 ~~~~p~~~k---a~~r~a~a~~~l~--------~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  303 (372)
                        +.|++..   ++|-+|.++...=        -...|+..|+..+.--|+.....++...+..++..+...+-.....|
T Consensus       100 --lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY  177 (254)
T COG4105         100 --LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY  177 (254)
T ss_pred             --hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              6666544   7888999977542        23678889999999999998778888888888887776665444333


Q ss_pred             HhhccCCCCCCcchHHHhhhhhh
Q psy8368         304 MKMFSSSSSPSQHSNVVRIAYQE  326 (372)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~  326 (372)
                      .+    .+....++..++..+..
T Consensus       178 ~k----r~~~~AA~nR~~~v~e~  196 (254)
T COG4105         178 LK----RGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HH----hcChHHHHHHHHHHHhc
Confidence            33    22222344444444433

>KOG4162|consensus

Probab=97.92  E-value=0.00016  Score=73.05  Aligned_cols=120  Identities=15%  Similarity=-0.047  Sum_probs=103.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ..-+.-.+..+.+.++-++|..+..+|-.+.+..               ...|+-+|.++...|++.+|...|..|+.  
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~--  712 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALA--  712 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence            3344456666667777888888888888876554               78899999999999999999999999996  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHH--HHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIK--HLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~--~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                        +||+++.+..-+|.++...|+-.-|..  .+..|+++||.|.   +++..++.+.+..++.+
T Consensus       713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~---eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH---EAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccchH
Confidence              999999999999999999998888877  9999999999999   99999999888777664

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.00016  Score=65.26  Aligned_cols=103  Identities=9%  Similarity=0.005  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      .+|.|.-+++.|+|..|...+..-++    .-|+   -+.|+|++|.+++.+|+|++|...|..+.+-.|+++-..+..-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~----~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIK----KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            78899999999999999999999998    6666   4669999999999999999999999999999998875557777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSSPS  314 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (372)
                      .|+.+..++++. ...+..|+.+...-+..+
T Consensus       220 Klg~~~~~l~~~-d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         220 KLGVSLGRLGNT-DEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHhcCH-HHHHHHHHHHHHHCCCCH
Confidence            777777776654 456677777776666653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00059  Score=62.35  Aligned_cols=116  Identities=13%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ---EWTSAIKHLKTARKLAAKDSVRAEI  281 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~---~~e~A~~~~~~al~l~p~~~~~~~~  281 (372)
                      .-+.-+|.+|+.++++..|...|.+|++    +.|+|+..+.-+|.+++...   ...+|...|++++++||+|.   .+
T Consensus       157 egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i---ra  229 (287)
T COG4235         157 EGWDLLGRAYMALGRASDALLAYRNALR----LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI---RA  229 (287)
T ss_pred             hhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH---HH
Confidence            4556699999999999999999999998    99999999999999987654   46789999999999999999   99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhcc
Q psy8368         282 DKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHE  328 (372)
Q Consensus       282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (372)
                      ...|+......+++. .....|+.|++...........++..+...-
T Consensus       230 l~lLA~~afe~g~~~-~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~  275 (287)
T COG4235         230 LSLLAFAAFEQGDYA-EAAAAWQMLLDLLPADDPRRSLIERSIARAL  275 (287)
T ss_pred             HHHHHHHHHHcccHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence            999999888888885 4567899999988887666666666655443

>KOG4151|consensus

Probab=97.86  E-value=6e-05  Score=76.38  Aligned_cols=113  Identities=22%  Similarity=0.317  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHH
Q psy8368         149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN--NKQYKLTCDC  226 (372)
Q Consensus       149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k--l~~y~~Ai~~  226 (372)
                      ...+.++...+.+||.+|.+++|..|...|..++.+++...           ...+.++.|.+.||+.  +++|..++..
T Consensus        47 ~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------~~~a~~~~~~~s~~m~~~l~~~~~~~~E  115 (748)
T KOG4151|consen   47 EVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------HVVATLRSNQASCYMQLGLGEYPKAIPE  115 (748)
T ss_pred             HHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------hhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence            34678999999999999999999999999999999987431           1226789999999886  5689999999


Q ss_pred             HHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         227 ASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       227 ~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      |+-++.    ..|...+++++++.+|..++.++-|++++.-....+|++.
T Consensus       116 ~~la~~----~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~  161 (748)
T KOG4151|consen  116 CELALE----SQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV  161 (748)
T ss_pred             hhhhhh----ccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999997    9999999999999999999999999999999999999996

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.83  E-value=1.5e-05  Score=48.76  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             HHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHH
Q psy8368         226 CASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK  263 (372)
Q Consensus       226 ~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~  263 (372)
                      +|++||+    ++|+|+.+|+++|.+|..+|++++|++
T Consensus         1 ~y~kAie----~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE----LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH----HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3788998    999999999999999999999999963

>KOG1128|consensus

Probab=97.83  E-value=7.8e-05  Score=74.81  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      +|......++|.++..+++.+++    ++|-....||++|.|...+++++.|..+|.++..++|++.   ++++.+...+
T Consensus       491 ~~~~~~~~~~fs~~~~hle~sl~----~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~---eaWnNls~ay  563 (777)
T KOG1128|consen  491 LALLILSNKDFSEADKHLERSLE----INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA---EAWNNLSTAY  563 (777)
T ss_pred             hccccccchhHHHHHHHHHHHhh----cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch---hhhhhhhHHH
Confidence            34444557999999999999998    9999999999999999999999999999999999999999   9999999988


Q ss_pred             HHHHHHHH
Q psy8368         290 LGNQQYQK  297 (372)
Q Consensus       290 ~~~~~~~~  297 (372)
                      -++++.++
T Consensus       564 i~~~~k~r  571 (777)
T KOG1128|consen  564 IRLKKKKR  571 (777)
T ss_pred             HHHhhhHH
Confidence            87776544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=2.9e-05  Score=47.26  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      .+++|+|.||..+++|++|+.+|++||+    ++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE----LDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH----HCcCC
Confidence            5789999999999999999999999998    88864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3060|consensus

Probab=97.82  E-value=0.00079  Score=59.92  Aligned_cols=128  Identities=17%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-------------CCChHHHHHHHHHH------HHHHHHHHHHHHHccC
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-------------VTNYEDQMQLEEYL------CRVYRNLMVCYNNNKQ  219 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-------------~~~~~~~~~~~~l~------~~l~~Nla~~~~kl~~  219 (372)
                      +-.|..+-..|.|++|+..|..-+.-.|...             ..+-+....+.+..      ..++.-+|..|+.+++
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence            4456677778899999999988776543221             00111112222221      2456667777888888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ---EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~---~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      |.+|.-++++.+=    .+|.|+--+-|+|..++-+|   +++-|..+|.++++++|.|.   -....+-.+-..+.
T Consensus       170 f~kA~fClEE~ll----~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~---ral~GI~lc~~~la  239 (289)
T KOG3060|consen  170 FEKAAFCLEELLL----IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL---RALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH---HHHHHHHHHHHHHH
Confidence            8888888887774    77777777777777776655   56677788888888888665   45555555544444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.82  E-value=0.00011  Score=49.61  Aligned_cols=48  Identities=8%  Similarity=0.020  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      ..+|.+|.++.++|+|+.|+.+++.+|+++|+|.   ++..+...+..++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~---Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR---QAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H---HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999   88877777776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00058  Score=62.78  Aligned_cols=140  Identities=13%  Similarity=0.101  Sum_probs=99.0

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-----------------CCCh---HHHH---HHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-----------------VTNY---EDQM---QLEEYLCRVYRN  209 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-----------------~~~~---~~~~---~~~~l~~~l~~N  209 (372)
                      +..+.....||.+-..|..+.|++..+..+..-+..-                 ..-+   +.-.   ...+....++--
T Consensus        67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Alqq  146 (389)
T COG2956          67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQ  146 (389)
T ss_pred             hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            5567788899999999999999997665443221100                 0000   0000   001223456666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         210 LMVCYNNNKQYKLTCDCASKALQFASHFATKD-----VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      +...|.+..+|++||+..++..+    +++..     +.-|.-+|..++...+++.|+..+.+|++.+|+..   -+.-.
T Consensus       147 Ll~IYQ~treW~KAId~A~~L~k----~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv---RAsi~  219 (389)
T COG2956         147 LLNIYQATREWEKAIDVAERLVK----LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV---RASII  219 (389)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH----cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce---ehhhh
Confidence            77889999999999999999887    66552     33567899999999999999999999999999998   66666


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8368         285 ILKADLGNQQYQKET  299 (372)
Q Consensus       285 l~~~~~~~~~~~~~~  299 (372)
                      ++.+....+++..+.
T Consensus       220 lG~v~~~~g~y~~AV  234 (389)
T COG2956         220 LGRVELAKGDYQKAV  234 (389)
T ss_pred             hhHHHHhccchHHHH
Confidence            777766666665443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.79  E-value=0.0002  Score=71.64  Aligned_cols=85  Identities=19%  Similarity=0.196  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ..+++.+|++|..+|+|++|+.+.++||.    ..|..+..|+.+|++|...|++.+|.+.+..|..+|+.|.   -+..
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---yiNs  266 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR---YINS  266 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---HHHH
Confidence            56778899999999999999999999998    9999999999999999999999999999999999999998   6655


Q ss_pred             HHHHHHHHHHHH
Q psy8368         284 EILKADLGNQQY  295 (372)
Q Consensus       284 ~l~~~~~~~~~~  295 (372)
                      ...+..-+....
T Consensus       267 K~aKy~LRa~~~  278 (517)
T PF12569_consen  267 KCAKYLLRAGRI  278 (517)
T ss_pred             HHHHHHHHCCCH
Confidence            555554444444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1130|consensus

Probab=97.78  E-value=0.0002  Score=67.63  Aligned_cols=109  Identities=15%  Similarity=0.152  Sum_probs=88.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      -..+-+.||.+.-.|+|+.|+++|++++.+.......         ...+...+.+|+.|.-+++|.+||.|..+-|.++
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456689999999999999999999998875433211         1124556679999999999999999999999876


Q ss_pred             ccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         235 SHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       235 ~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      ..+...  ...|++-+|.+|..+|+.+.|+....+.+++.
T Consensus       306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            555433  67899999999999999999999988888763

>TIGR00540 hemY_coli hemY protein

Probab=97.75  E-value=0.0012  Score=64.66  Aligned_cols=156  Identities=12%  Similarity=0.045  Sum_probs=110.4

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      +.-.|..+..+|++..|...|.++.+..+...              ..+...++..++..|+|+.|+..++..++    .
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~----~  182 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDN--------------ILVEIARTRILLAQNELHAARHGVDKLLE----M  182 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc--------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH----h
Confidence            45678888899999999999999987765431              23444568899999999999999999998    8


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-cHHHH--HHH---HHH---------HHHHHHHH------H
Q psy8368         238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEI--DKE---ILK---------ADLGNQQY------Q  296 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~--~~~---l~~---------~~~~~~~~------~  296 (372)
                      .|+++.++..++.+|...|++++|+..+.+.++....+. ....+  ...   +..         +.......      .
T Consensus       183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~  262 (409)
T TIGR00540       183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN  262 (409)
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence            999999999999999999999999999999998855443 00000  111   100         00001100      1


Q ss_pred             HHHHHHHHhhccCCCCCCcchHHHhhhhhhccCCC
Q psy8368         297 KETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVR  331 (372)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (372)
                      ......+...+...+..+++....++.++..|+..
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~  297 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR  297 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence            11223344456666666678888888888777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4234|consensus

Probab=97.74  E-value=0.0002  Score=61.51  Aligned_cols=100  Identities=22%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK  287 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~  287 (372)
                      --|+-+++.|+|.+|...|..||.+++..... ..-.|.++|.|+++++.++.|+.++.+|++|.|.+.   .+....+.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~RRAe  176 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALERRAE  176 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHHHHHH
Confidence            34677889999999999999999844322111 333677999999999999999999999999999987   55555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         288 ADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +...+.++. ..-..|++++...+.
T Consensus       177 ayek~ek~e-ealeDyKki~E~dPs  200 (271)
T KOG4234|consen  177 AYEKMEKYE-EALEDYKKILESDPS  200 (271)
T ss_pred             HHHhhhhHH-HHHHHHHHHHHhCcc
Confidence            555554443 334556666655444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.72  E-value=6.9e-05  Score=45.50  Aligned_cols=33  Identities=18%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578899999999999999999999999998854

...

>KOG1174|consensus

Probab=97.72  E-value=0.00057  Score=64.72  Aligned_cols=136  Identities=15%  Similarity=0.175  Sum_probs=102.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHH---------HHHHHHHHHHHH----------HHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYED---------QMQLEEYLCRVY----------RNLMVCYN  215 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~---------~~~~~~l~~~l~----------~Nla~~~~  215 (372)
                      ..-+-..|..+|..|++.+|+..|.++..+.++.-..-+.-         -.....+...++          +=-+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            44566789999999999999999999988766543221110         011222221111          11233455


Q ss_pred             HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      ..++|..|+.+..++++    .+|++..+|.-.|.++..+++.++|+-.|+.|..+.|.+-   .+...|-.+....+..
T Consensus       312 ~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL---~~Y~GL~hsYLA~~~~  384 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL---EIYRGLFHSYLAQKRF  384 (564)
T ss_pred             hhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhhchH
Confidence            67899999999999998    9999999999999999999999999999999999999887   7777777776655555


Q ss_pred             HH
Q psy8368         296 QK  297 (372)
Q Consensus       296 ~~  297 (372)
                      ++
T Consensus       385 kE  386 (564)
T KOG1174|consen  385 KE  386 (564)
T ss_pred             HH
Confidence            44

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.68  E-value=0.002  Score=54.86  Aligned_cols=118  Identities=8%  Similarity=0.026  Sum_probs=95.7

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ........||.+...|++.+|..+|.+++.=+    -..+          ..+++.+|++.+.++++..|....+...+ 
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~----fA~d----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e-  152 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI----FAHD----------AAMLLGLAQAQFAIQEFAAAQQTLEDLME-  152 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCC----------HHHHHHHHHHHHhhccHHHHHHHHHHHhh-
Confidence            34566678999999999999999999998643    1122          57788999999999999999999999997 


Q ss_pred             hccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       234 ~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                         .+|.  .+...+-.|.+|..+|.+.+|...|+.++..-|+-.    .+-........++
T Consensus       153 ---~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~----ar~~Y~e~La~qg  207 (251)
T COG4700         153 ---YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ----ARIYYAEMLAKQG  207 (251)
T ss_pred             ---cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH----HHHHHHHHHHHhc
Confidence               5565  677888999999999999999999999999999865    4444444444333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.67  E-value=9.9e-05  Score=47.93  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKA  251 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a  251 (372)
                      .++..+|.+|..+|++++|+..++++++    .+|+|..+++.+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~----~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALA----LDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCCHHHHHHhhhC
Confidence            3578899999999999999999999998    999999999998863

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.67  E-value=0.001  Score=60.40  Aligned_cols=82  Identities=5%  Similarity=-0.228  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK---LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k---a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ...++..|.-+++.|+|++|+..+++++.    ..|....   +.+++|.+|..+++|++|+..+++.+++.|+++..+.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            34567788999999999999999999997    7777544   5699999999999999999999999999999985566


Q ss_pred             HHHHHHHHH
Q psy8368         281 IDKEILKAD  289 (372)
Q Consensus       281 ~~~~l~~~~  289 (372)
                      +...++.+.
T Consensus       108 a~Y~~g~~~  116 (243)
T PRK10866        108 VLYMRGLTN  116 (243)
T ss_pred             HHHHHHHhh
Confidence            666666553

>KOG1156|consensus

Probab=97.65  E-value=0.00066  Score=67.51  Aligned_cols=124  Identities=11%  Similarity=0.108  Sum_probs=108.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ++++.+--.|-.+...|+-++|...-..+++....+               ..|+--+|..+..-++|++||++|+.||+
T Consensus        39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~  103 (700)
T KOG1156|consen   39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---------------HVCWHVLGLLQRSDKKYDEAIKCYRNALK  103 (700)
T ss_pred             ccchhHHhccchhhcccchHHHHHHHHHHhccCccc---------------chhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence            345666678889999999999999999999876555               47888899999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                          ++|+|...|.-++.....+++|+.....-.+.+++.|++.   +-+-.++..+.....+..+
T Consensus       104 ----~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r---a~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen  104 ----IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR---ASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             ----cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999999999999999999998   8787777777777766543

>PRK10941 hypothetical protein; Provisional

Probab=97.62  E-value=0.00075  Score=61.88  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368         202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI  281 (372)
Q Consensus       202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~  281 (372)
                      +....+.|+=.+|++.++|..|+.+++..|.    ++|+++.-+--||.+|..+|.+..|+.+++..++..|+++.+..+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQ----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            4567888999999999999999999999997    999999888889999999999999999999999999999844444


Q ss_pred             HHHHHHHH
Q psy8368         282 DKEILKAD  289 (372)
Q Consensus       282 ~~~l~~~~  289 (372)
                      +..+..+.
T Consensus       255 k~ql~~l~  262 (269)
T PRK10941        255 RAQIHSIE  262 (269)
T ss_pred             HHHHHHHh
Confidence            44444443

>KOG4642|consensus

Probab=97.61  E-value=0.00011  Score=64.70  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      --+.+|+.-+.|..|+.+|.+||.    ++|..+.=|.++|.||+++.+++.+..+.++|++++|+..   ..+..++.+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~----~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v---k~h~flg~~   87 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAIC----INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV---KAHYFLGQW   87 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHh----cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH---HHHHHHHHH
Confidence            346778888999999999999996    9999998888999999999999999999999999999998   888888888


Q ss_pred             HHHHHHHHHHHH
Q psy8368         289 DLGNQQYQKETK  300 (372)
Q Consensus       289 ~~~~~~~~~~~~  300 (372)
                      ......+....+
T Consensus        88 ~l~s~~~~eaI~   99 (284)
T KOG4642|consen   88 LLQSKGYDEAIK   99 (284)
T ss_pred             HHhhccccHHHH
Confidence            877776665443

>PRK11906 transcriptional regulator; Provisional

Probab=97.61  E-value=0.00096  Score=64.63  Aligned_cols=83  Identities=11%  Similarity=-0.020  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         204 CRVYRNLMVCYNNN---------KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       204 ~~l~~Nla~~~~kl---------~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      ..+|.-+|.||+.+         ..-.+|....++|++    +||.++.|++.+|.++...++++.|...|++|+.++|+
T Consensus       295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve----ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn  370 (458)
T PRK11906        295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD----ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD  370 (458)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence            66777888888765         235678888899997    99999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHH
Q psy8368         275 DSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       275 ~~~~~~~~~~l~~~~~~~~  293 (372)
                      .+   .++...+-+.-..+
T Consensus       371 ~A---~~~~~~~~~~~~~G  386 (458)
T PRK11906        371 IA---SLYYYRALVHFHNE  386 (458)
T ss_pred             cH---HHHHHHHHHHHHcC
Confidence            99   88777776544433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.61  E-value=0.001  Score=58.63  Aligned_cols=85  Identities=8%  Similarity=-0.068  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...++..|..++..|+|.+|+..++.++...+ ..|--.+|.+.+|.+|...|+|..|+..+++.++..|+++....+..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            45678899999999999999999999997331 23446789999999999999999999999999999999986666666


Q ss_pred             HHHHHH
Q psy8368         284 EILKAD  289 (372)
Q Consensus       284 ~l~~~~  289 (372)
                      .++.+.
T Consensus        84 ~~g~~~   89 (203)
T PF13525_consen   84 MLGLSY   89 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.60  E-value=0.0003  Score=65.56  Aligned_cols=93  Identities=12%  Similarity=0.072  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHH--cc--CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368         206 VYRNLMVCYNN--NK--QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI  281 (372)
Q Consensus       206 l~~Nla~~~~k--l~--~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~  281 (372)
                      +..++|.++..  .|  .+.+|...|++..+    ..+.+++.+..+|.|++.+|+|++|...+..|+..+|+++   ++
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~---d~  237 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP---DT  237 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH---HH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH---HH
Confidence            44555555444  33  68999999999765    4567888899999999999999999999999999999998   87


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368         282 DKEILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       282 ~~~l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      ...+.-+....++...........
T Consensus       238 LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  238 LANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHH
Confidence            777777766665553333333333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.54  E-value=0.0018  Score=63.20  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=93.6

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .....+..+...|+.+.|.....++++. +..    +           .+..-.  ..+..+++++++..++..++    
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~----~-----------~l~~l~--~~l~~~~~~~al~~~e~~lk----  322 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYD----E-----------RLVLLI--PRLKTNNPEQLEKVLRQQIK----  322 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC----H-----------HHHHHH--hhccCCChHHHHHHHHHHHh----
Confidence            3345578888889999999999888873 111    1           111111  22345999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                      .+|+++..++-+|.++...+++++|.++|+++++++|++.   . ...+..+....++..+ ....|++.+
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~---~-~~~La~~~~~~g~~~~-A~~~~~~~l  388 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY---D-YAWLADALDRLHKPEE-AAAMRRDGL  388 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---H-HHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence            9999999999999999999999999999999999999987   4 3467777777666543 345555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.53  E-value=0.00066  Score=63.23  Aligned_cols=69  Identities=14%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW-TSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~-e~A~~~~~~al~l~p~~~  276 (372)
                      ..+++.+|.|++.+|+|++|...+.+++.    .+|+++.++.+++.+...+|+. +.+.+++.+....+|+++
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALE----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCC----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            46788899999999999999999999997    9999999999999999999988 667788999889999998

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060|consensus

Probab=97.51  E-value=0.0049  Score=54.98  Aligned_cols=88  Identities=5%  Similarity=-0.036  Sum_probs=49.5

Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         217 NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      +|+--+||+....-|+    .-+++..||..++..|...|+|+.|.-+|+.++-+.|-|+   ..+..++.+.--++-..
T Consensus       133 ~GK~l~aIk~ln~YL~----~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLD----KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---LYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             cCCcHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHhhHH
Confidence            4444444444444444    3355556666666666666666666666666666666666   66666666654433222


Q ss_pred             --HHHHHHHHhhccCCC
Q psy8368         297 --KETKARCMKMFSSSS  311 (372)
Q Consensus       297 --~~~~~~~~~~~~~~~  311 (372)
                        .-.++.|.+.+....
T Consensus       206 N~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  206 NLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHHHhCh
Confidence              233555555554444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.51  E-value=0.0002  Score=43.28  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      .++.++|.+|+++|+|++|+.+++++++    ++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~----l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE----LDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH----HCcCC
Confidence            4688999999999999999999999998    88875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.51  E-value=0.00061  Score=71.78  Aligned_cols=111  Identities=12%  Similarity=0.000  Sum_probs=83.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHH-----HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYL-----CRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~-----~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      ...+.-.|-.++..+++.+|...  .++..++..... .-...-...+.     ..++..+|.||-++|++++|...+++
T Consensus        65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer  141 (906)
T PRK14720         65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER  141 (906)
T ss_pred             eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34556677888888888888777  666665443211 10000000000     13777899999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      +|+    ++|+|+-++-++|..|... ++++|+.++.+|+...-
T Consensus       142 ~L~----~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        142 LVK----ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHh----cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            998    9999999999999999999 99999999999986543

>KOG0551|consensus

Probab=97.49  E-value=0.001  Score=61.35  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VR  278 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~  278 (372)
                      +.-|---|+-|++-++|..|+..|++.|+.- .-||+ |+-.|.+||.|...+|+|-.|+.++.+|++++|.+.    +.
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKK-CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4556677899999999999999999999722 23455 777899999999999999999999999999999997    33


Q ss_pred             HHHHHHHHH
Q psy8368         279 AEIDKEILK  287 (372)
Q Consensus       279 ~~~~~~l~~  287 (372)
                      +.+.-+|.+
T Consensus       160 Akc~~eLe~  168 (390)
T KOG0551|consen  160 AKCLLELER  168 (390)
T ss_pred             hHHHHHHHH
Confidence            344444444

>KOG1127|consensus

Probab=97.49  E-value=0.001  Score=69.04  Aligned_cols=94  Identities=16%  Similarity=0.055  Sum_probs=77.0

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQE-WTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~-~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      .--+..++|++|++.|.++|+    .||+|..|++-+|.++..++. .++|.+.|..|.+++|+|.   -+++.|..+.+
T Consensus        10 k~al~nk~YeealEqskkvLk----~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnl---LAWkGL~nLye   82 (1238)
T KOG1127|consen   10 KDALRNKEYEEALEQSKKVLK----EDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNL---LAWKGLGNLYE   82 (1238)
T ss_pred             HHHHhhccHHHHHHHHHHHHh----cCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhh---HHHHHHHHHHH
Confidence            334556899999999999998    999999999999999999998 9999999999999999999   99999999988


Q ss_pred             HHHHHH--HHHHHHHHhhccCCCC
Q psy8368         291 GNQQYQ--KETKARCMKMFSSSSS  312 (372)
Q Consensus       291 ~~~~~~--~~~~~~~~~~~~~~~~  312 (372)
                      +...-.  ...-..|++.+.....
T Consensus        83 ~~~dIl~ld~~~~~yq~~~l~le~  106 (1238)
T KOG1127|consen   83 RYNDILDLDRAAKCYQRAVLILEN  106 (1238)
T ss_pred             ccchhhhhhHhHHHHHHHHHhhhh
Confidence            733222  2233555555554443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.47  E-value=0.00088  Score=56.17  Aligned_cols=96  Identities=7%  Similarity=-0.146  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      ...+..|--++..|+|++|...++-..-    +||.|.+=++-+|.|+..+++|+.|+..|-.|..++++|+   ...-.
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---~p~f~  110 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY---RPVFF  110 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---Cccch
Confidence            4455678888899999999999998886    9999999999999999999999999999999999999999   77778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         285 ILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      .+.|...+++...+. ..+.-...
T Consensus       111 agqC~l~l~~~~~A~-~~f~~a~~  133 (165)
T PRK15331        111 TGQCQLLMRKAAKAR-QCFELVNE  133 (165)
T ss_pred             HHHHHHHhCCHHHHH-HHHHHHHh
Confidence            888888777665443 34444444

>KOG0495|consensus

Probab=97.46  E-value=0.0021  Score=64.18  Aligned_cols=166  Identities=12%  Similarity=0.034  Sum_probs=118.1

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC---------ChHHHHHHHHHHH---------HHHHHHHHHHHHcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT---------NYEDQMQLEEYLC---------RVYRNLMVCYNNNK  218 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~~~~l~~---------~l~~Nla~~~~kl~  218 (372)
                      -+...+..++..|+...|.....+|++..+++..-         .+.+....+.++.         .++..-+....-++
T Consensus       586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence            44556777888899999999999988887653211         1112223333332         25555666666789


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         219 QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      +.++|+..|+++|+    .-|+..|.|..+|+++..+++.+.|...|...++..|...   .++-.|.++..+..... +
T Consensus       666 ~~eeA~rllEe~lk----~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i---pLWllLakleEk~~~~~-r  737 (913)
T KOG0495|consen  666 NVEEALRLLEEALK----SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI---PLWLLLAKLEEKDGQLV-R  737 (913)
T ss_pred             hHHHHHHHHHHHHH----hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHhcchh-h
Confidence            99999999999998    7899999999999999999999999999999999999999   89999998887765332 3


Q ss_pred             HHHHHHhhccC-----------------CCCCCcchHHHhhhhhhccCC
Q psy8368         299 TKARCMKMFSS-----------------SSSPSQHSNVVRIAYQEHEQV  330 (372)
Q Consensus       299 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~  330 (372)
                      .+..+.+.--+                 .+..+++....-+++|++|..
T Consensus       738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            33333332111                 122334555566778888764

>KOG1127|consensus

Probab=97.42  E-value=0.00096  Score=69.31  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL  286 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~  286 (372)
                      +..+|..|++.+++..|+.+++-||+    .+|.+..+|.-+|.||...|+|.-|+..|.+|..++|.+.   -.+...+
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR----~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y~~fk~A  637 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALR----TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---YGRFKEA  637 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhc----CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---HHHHHHH
Confidence            44488899999999999999999998    9999999999999999999999999999999999999998   7777777


Q ss_pred             HHHHHHHHHHHHH
Q psy8368         287 KADLGNQQYQKET  299 (372)
Q Consensus       287 ~~~~~~~~~~~~~  299 (372)
                      .+.....+|+...
T Consensus       638 ~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  638 VMECDNGKYKEAL  650 (1238)
T ss_pred             HHHHHhhhHHHHH
Confidence            7777777776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.42  E-value=0.0039  Score=62.53  Aligned_cols=55  Identities=7%  Similarity=0.033  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                      .++|-+|+.|..+|++++|++++++|+...|...   +....-+++.+..++..++..
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~---ely~~KarilKh~G~~~~Aa~  249 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV---ELYMTKARILKHAGDLKEAAE  249 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHCCCHHHHHH
Confidence            4678899999999999999999999999999999   888888888888877766553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.42  E-value=0.0022  Score=52.63  Aligned_cols=71  Identities=8%  Similarity=-0.049  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .-+++.|...++.|+|.+|+..++.+....+ ..|-...|.+.++-+|+..++|++|+..+++-++++|+++
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            4577889999999999999999999987331 2344678999999999999999999999999999999998

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.40  E-value=0.0027  Score=61.42  Aligned_cols=107  Identities=13%  Similarity=0.068  Sum_probs=92.2

Q ss_pred             ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368         168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV  247 (372)
Q Consensus       168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r  247 (372)
                      .++++.|+..+.+.....+                  .+..-+|.+++..++-.+|+....++|+    ..|.+...+.-
T Consensus       182 t~~~~~ai~lle~L~~~~p------------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d~~LL~~  239 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDP------------------EVAVLLARVYLLMNEEVEAIRLLNEALK----ENPQDSELLNL  239 (395)
T ss_pred             cccHHHHHHHHHHHHhcCC------------------cHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence            4567778877777655432                  2233478899999999999999999997    88999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         248 WGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       248 ~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                      -|..++..++++.|+...++|..+.|++-   ..+..|+++....++++.+-
T Consensus       240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~f---~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  240 QAEFLLSKKKYELALEIAKKAVELSPSEF---ETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999   99999999999999887664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555|consensus

Probab=97.39  E-value=0.0025  Score=51.12  Aligned_cols=64  Identities=16%  Similarity=0.103  Sum_probs=58.1

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .-|.+...-|+.+.|++.+.++|.    +-|.++-+|.++|+++.-.|+.++|++++++|+++..+..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~----l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t  111 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALC----LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT  111 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHH----hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence            346677788999999999999997    8899999999999999999999999999999999976554

>KOG3785|consensus

Probab=97.35  E-value=0.0013  Score=61.27  Aligned_cols=104  Identities=11%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             HHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh
Q psy8368         164 NAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK  243 (372)
Q Consensus       164 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k  243 (372)
                      .++...+|..|+....-.+...       .+++       .++-.=+|.|++.+|+|++|+..|+.+.+    .+..+.+
T Consensus        31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~e   92 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAE   92 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcc
Confidence            4555678888877766555321       1111       24445579999999999999999999986    6666889


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      .+.++|.|++-+|.|.+|...-.+|    |+++   -..+++-.+..++
T Consensus        93 l~vnLAcc~FyLg~Y~eA~~~~~ka----~k~p---L~~RLlfhlahkl  134 (557)
T KOG3785|consen   93 LGVNLACCKFYLGQYIEAKSIAEKA----PKTP---LCIRLLFHLAHKL  134 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhC----CCCh---HHHHHHHHHHHHh
Confidence            9999999999999999998766655    6666   5555554444433

>PRK11906 transcriptional regulator; Provisional

Probab=97.35  E-value=0.0015  Score=63.27  Aligned_cols=69  Identities=10%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ..++..+|.++.-.++++.|+..+++|+.    ++|+.+.++|..|.++...|+.++|++.+++|++++|.-.
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            46788889988889999999999999997    9999999999999999999999999999999999999765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.0048  Score=52.98  Aligned_cols=103  Identities=12%  Similarity=0.012  Sum_probs=80.5

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ......+..++..+++++|+...+.++..-..            ..+...+-.++|.+.+.+|.+++|+...+..-    
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~----  153 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIK----  153 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----
Confidence            34456788889999999999999999965311            12445677789999999999999998877554    


Q ss_pred             cCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                        ++. .....-.+|.++..+|+-.+|+..|.+|+..++++.
T Consensus       154 --~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         154 --EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             --cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence              222 222355789999999999999999999999986655

>KOG1941|consensus

Probab=97.29  E-value=0.0025  Score=59.56  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|+.+...+.|+++++.|+.|+++......+.         +...++..++..|-.+++|++|+-+..+|+.+...
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            344588999999999999999999999875542221         11467889999999999999999999999986544


Q ss_pred             CCCC--ch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         237 FATK--DV----KLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       237 ~~p~--~~----ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      +.-+  +.    -++|+++.++..+|+.-+|.++.+.|.++.
T Consensus       195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            4322  22    278899999999999999999999998874

>KOG3364|consensus

Probab=97.26  E-value=0.0032  Score=50.73  Aligned_cols=84  Identities=6%  Similarity=-0.005  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368         204 CRVYRNLMVCYNNNKQ---YKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA  279 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~---y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~  279 (372)
                      ..+.+|+|.|+.+..+   -.+.|..++..++   .-.|. ....+|-+|..|+++++|+.|+.+++..++.+|+|.   
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~---~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~---  105 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK---SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR---  105 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh---hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH---
Confidence            4678899999987654   6777888888884   23444 666889999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHHHH
Q psy8368         280 EIDKEILKADLGNQ  293 (372)
Q Consensus       280 ~~~~~l~~~~~~~~  293 (372)
                      ++..+-..+..++.
T Consensus       106 Qa~~Lk~~ied~it  119 (149)
T KOG3364|consen  106 QALELKETIEDKIT  119 (149)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77766666655544

>KOG4814|consensus

Probab=97.17  E-value=0.0048  Score=61.46  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=88.0

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      -+-+.+..+|+..+|..|++.|...+.+++...         ...-.+.+..|++.||+++.+.++|.+++.+|-+    
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----  422 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----  422 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----
Confidence            445788899999999999999999999876541         1222378899999999999999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      .||.++-..+-..++...-+.-++|+.++.+.+...
T Consensus       423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            999999888888888888999999999998887653

>KOG0495|consensus

Probab=97.13  E-value=0.0093  Score=59.77  Aligned_cols=150  Identities=14%  Similarity=0.080  Sum_probs=114.1

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      +...++...-.++.++|+....+||+.++..               ..+|.-+|+.+-++++.+.|...|...++    .
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k----~  714 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTK----K  714 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccc----c
Confidence            3445556666788899999999999988776               68999999999999999999999999998    8


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----
Q psy8368         238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS-----  312 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  312 (372)
                      -|+.+-.|.-+++.-...|....|...|.++...+|+|.   ..+-+.-++..+.+.... ......+.++.+..     
T Consensus       715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~---~lwle~Ir~ElR~gn~~~-a~~lmakALQecp~sg~LW  790 (913)
T KOG0495|consen  715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA---LLWLESIRMELRAGNKEQ-AELLMAKALQECPSSGLLW  790 (913)
T ss_pred             CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc---hhHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCccchhH
Confidence            899999999999999999999999999999999999999   666555555555444432 33344444444432     


Q ss_pred             --------CCcchHHHhhhhhhccCC
Q psy8368         313 --------PSQHSNVVRIAYQEHEQV  330 (372)
Q Consensus       313 --------~~~~~~~~~~~~~~~~~~  330 (372)
                              .+++......+++.++..
T Consensus       791 aEaI~le~~~~rkTks~DALkkce~d  816 (913)
T KOG0495|consen  791 AEAIWLEPRPQRKTKSIDALKKCEHD  816 (913)
T ss_pred             HHHHHhccCcccchHHHHHHHhccCC
Confidence                    223444444566665544

>KOG4507|consensus

Probab=97.07  E-value=0.0025  Score=62.86  Aligned_cols=103  Identities=18%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy8368         167 NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFF  246 (372)
Q Consensus       167 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~  246 (372)
                      ..|+...|+.+...|+...+...              -.-..|+|+.+++-+....|-....++|.    +....+-.+|
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~--------------~v~~v~la~~~~~~~~~~da~~~l~q~l~----~~~sepl~~~  680 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQ--------------DVPLVNLANLLIHYGLHLDATKLLLQALA----INSSEPLTFL  680 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhh--------------cccHHHHHHHHHHhhhhccHHHHHHHHHh----hcccCchHHH
Confidence            57888899999999886643321              23467999999999999999999999997    7677778899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         247 VWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       247 r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      -.|.+|+.+.+.+.|++.|+.|++++|++.   .+...|..+.-
T Consensus       681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~---~~~~~l~~i~c  721 (886)
T KOG4507|consen  681 SLGNAYLALKNISGALEAFRQALKLTTKCP---ECENSLKLIRC  721 (886)
T ss_pred             hcchhHHHHhhhHHHHHHHHHHHhcCCCCh---hhHHHHHHHHH
Confidence            999999999999999999999999999999   88888877654

>KOG1586|consensus

Probab=97.07  E-value=0.03  Score=49.53  Aligned_cols=106  Identities=11%  Similarity=0.092  Sum_probs=79.7

Q ss_pred             HhhHHHHhc-cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368         160 ASGKNAFND-KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA  238 (372)
Q Consensus       160 ~~Gn~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~  238 (372)
                      +.|..|-.. .++.+|+.+|.+|-.++...         +....-..|+...|..-..+++|.+||..|+++.+.  .++
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~--s~~  186 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS--SLD  186 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc
Confidence            444444443 67888888998888887543         223334578888888888999999999999998751  122


Q ss_pred             CC----chhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         239 TK----DVKLF-FVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       239 p~----~~ka~-~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .+    .+|-| ++.|.||+-..+.-.|...+++-..++|...
T Consensus       187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            22    35555 4778999999999999999999999999876

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.06  E-value=0.0068  Score=60.43  Aligned_cols=103  Identities=18%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +--+...|..+..+|+.++|+..|++|+..           ..+...+...++..+|.|++-+.+|.+|..++...++  
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~--  333 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK--  333 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh--
Confidence            344667899999999999999999999842           1233445578899999999999999999999999985  


Q ss_pred             ccCCCCchhHHH--HHHHHHHhcCCH-------HHHHHHHHHHHhhcC
Q psy8368         235 SHFATKDVKLFF--VWGKALIGLQEW-------TSAIKHLKTARKLAA  273 (372)
Q Consensus       235 ~~~~p~~~ka~~--r~a~a~~~l~~~-------e~A~~~~~~al~l~p  273 (372)
                         ..+..+|+|  -.|.|+..+++.       ++|...|.++-.+-.
T Consensus       334 ---~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  334 ---ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             ---ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence               455677766  468889999999       888888888876654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.06  E-value=0.043  Score=50.84  Aligned_cols=121  Identities=16%  Similarity=0.053  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      ....+..+.+.|..+++++ +|..|+...++|+++++.. ...+.......+++..++..++.+|+..+.++.... |..
T Consensus        31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~  108 (278)
T PF08631_consen   31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALN  108 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHH
Confidence            4578899999999999999 9999999999999998652 111122345567888999999999999998765444 666


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      +++.....-|+.+-.++-.=.+....++.+++.+.+.+.+.--+
T Consensus       109 ~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  109 ALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            77655445676666665555566668999999999999987654

It is also involved in sporulation [].

>KOG2796|consensus

Probab=97.05  E-value=0.019  Score=51.61  Aligned_cols=133  Identities=11%  Similarity=0.052  Sum_probs=97.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC------------CChHH--H----------HHHHH--HHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV------------TNYED--Q----------MQLEE--YLCRVY  207 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~~~--~----------~~~~~--l~~~l~  207 (372)
                      ....+.-..+.+...|.|.-.+..|.+.++..+...+            ..+..  .          ..+..  ....++
T Consensus       176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~  255 (366)
T KOG2796|consen  176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL  255 (366)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence            3445666788888899999999999998886532110            00100  0          01111  124577


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368         208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK  287 (372)
Q Consensus       208 ~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~  287 (372)
                      -|.+..|.-.++|..|...+++++.    .||.++.+-.+.|.|++-+|+..+|++.+..++...|.......+.-.|..
T Consensus       256 ~n~a~i~lg~nn~a~a~r~~~~i~~----~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~t  331 (366)
T KOG2796|consen  256 MNSAFLHLGQNNFAEAHRFFTEILR----MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTT  331 (366)
T ss_pred             hhhhhheecccchHHHHHHHhhccc----cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence            8889999999999999999999997    999999999999999999999999999999999999987622234344444


Q ss_pred             HHH
Q psy8368         288 ADL  290 (372)
Q Consensus       288 ~~~  290 (372)
                      +..
T Consensus       332 myE  334 (366)
T KOG2796|consen  332 MYE  334 (366)
T ss_pred             HHH
Confidence            433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.16  Score=46.61  Aligned_cols=181  Identities=15%  Similarity=0.100  Sum_probs=114.8

Q ss_pred             CeEEEcCCCc------cchHHHHHhccCCCCcEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEEeeecCccccccc
Q psy8368          60 PERFQLGSSG------LIPAFEYAILSMQKGEKSDFFASYELCFGALGC--PPRIPAKADLLFEVHLINFSIDPQVVRSS  131 (372)
Q Consensus        60 ~~~~~~g~~~------~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~--~~~ip~~~~~~~~iel~~~~~~~~~~~~~  131 (372)
                      |+-+-++..-      +.|-|+... .--.|....+++.++..-.-.+.  ...||         .+.-|. ++.+++.|
T Consensus        45 PVlV~fWap~~~~c~qL~p~Lekla-~~~~G~f~LakvN~D~~p~vAaqfgiqsIP---------tV~af~-dGqpVdgF  113 (304)
T COG3118          45 PVLVDFWAPWCGPCKQLTPTLEKLA-AEYKGKFKLAKVNCDAEPMVAAQFGVQSIP---------TVYAFK-DGQPVDGF  113 (304)
T ss_pred             CeEEEecCCCCchHHHHHHHHHHHH-HHhCCceEEEEecCCcchhHHHHhCcCcCC---------eEEEee-CCcCcccc
Confidence            7887777542      234344333 33468888888876643221111  11354         455566 66666654


Q ss_pred             cccccccccCccCchhHHHHHH-----HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHH
Q psy8368         132 ADIESDFIDSQVEEPAFAKVLK-----RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRV  206 (372)
Q Consensus       132 ~~~~~~~~~~~~e~~~~~~~~~-----~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l  206 (372)
                      .        +.-....+.+.+.     ........+..+...+++..|...|..++...+..               ..+
T Consensus       114 ~--------G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---------------~~~  170 (304)
T COG3118         114 Q--------GAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---------------SEA  170 (304)
T ss_pred             C--------CCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---------------chH
Confidence            3        2211112222222     23446678889999999999999999999997665               356


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHH---------------HHhh---------------ccCCCCchhHHHHHHHHHHhcC
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKA---------------LQFA---------------SHFATKDVKLFFVWGKALIGLQ  256 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~a---------------L~~~---------------~~~~p~~~ka~~r~a~a~~~l~  256 (372)
                      ..-+|.||+..|+.+.|...+...               |+..               -..||++..+-+.+|..|...|
T Consensus       171 ~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g  250 (304)
T COG3118         171 KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVG  250 (304)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            667888888888876655443320               1100               0247888889999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q psy8368         257 EWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       257 ~~e~A~~~~~~al~l~p~  274 (372)
                      ++++|++.+-..++.+-+
T Consensus       251 ~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         251 RNEAALEHLLALLRRDRG  268 (304)
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999998888888887654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.98  E-value=0.0013  Score=39.34  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      |+|++|.+|..+|++++|+..|++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67788888888888888888888888777763

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.97  E-value=0.0059  Score=51.85  Aligned_cols=69  Identities=19%  Similarity=0.146  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         219 QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQE----------WTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~----------~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      -|+.|++.++.+..    .+|.++.+++|.|.|++.|.+          +++|+.-|+.|+.++|+..   .+.-.++.+
T Consensus         6 ~FE~ark~aea~y~----~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h---dAlw~lGnA   78 (186)
T PF06552_consen    6 FFEHARKKAEAAYA----KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH---DALWCLGNA   78 (186)
T ss_dssp             HHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHH
Confidence            47889999999886    899999999999999998854          4778999999999999998   888888777


Q ss_pred             HHHHHH
Q psy8368         289 DLGNQQ  294 (372)
Q Consensus       289 ~~~~~~  294 (372)
                      ...+..
T Consensus        79 ~ts~A~   84 (186)
T PF06552_consen   79 YTSLAF   84 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.94  E-value=0.0031  Score=42.57  Aligned_cols=41  Identities=7%  Similarity=-0.001  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWG  249 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a  249 (372)
                      .+++.+|..++++|+|.+|..+|+.+|+    .+|+|..|.--..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~----~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLE----IEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHh----hCCCcHHHHHHHH
Confidence            4678899999999999999999999998    9999988765443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.93  E-value=0.0013  Score=39.71  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      .++.++|.+|.++|++++|+.+++++++    ++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~----~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE----LNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH----HHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC
Confidence            4688999999999999999999999998    76653

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.88  E-value=0.0033  Score=54.85  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .++.+++-+|..|-.+|-+.-|..+++++|.    +.|+-+.++.-+|.-+..-|+|+.|.+.|..++++||.+.
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            3478899999999999999999999999996    9999999999999999999999999999999999999876

>smart00028 TPR Tetratricopeptide repeats

Probab=96.84  E-value=0.0018  Score=37.45  Aligned_cols=31  Identities=19%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      +++++|.++..+++++.|+..|.++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340|consensus

Probab=96.84  E-value=0.0049  Score=56.23  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+....+.|-.+|+.|+|+.|+..|+.|+++-.+.               .-+-+|+|.|+++.++|..|+++..++++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq---------------pllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------------PLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            35667788999999999999999999999986655               367789999999999999999999998863


Q ss_pred             hccCCCC----------------c---------hhHHHHHHHHHHhcCCHHHHHHHHH
Q psy8368         234 ASHFATK----------------D---------VKLFFVWGKALIGLQEWTSAIKHLK  266 (372)
Q Consensus       234 ~~~~~p~----------------~---------~ka~~r~a~a~~~l~~~e~A~~~~~  266 (372)
                      --...|.                |         +.|+.-.+.+++..++++.|.+.+.
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence            2111111                1         3366667888999999999887664

>KOG0376|consensus

Probab=96.84  E-value=0.0027  Score=61.40  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VRAE  280 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~~~  280 (372)
                      ..+-|-|..+++-+.|+.|+..|.+||+    ++|+++.-+-+|+.+|.+.++|..|+.++.+|++++|...    +++.
T Consensus         5 ~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~   80 (476)
T KOG0376|consen    5 EELKNEANEALKDKVFDVAVDLYSKAIE----LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGT   80 (476)
T ss_pred             hhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccH
Confidence            3455677888999999999999999998    9999999999999999999999999999999999999875    3334


Q ss_pred             HHHHHHHHHH
Q psy8368         281 IDKEILKADL  290 (372)
Q Consensus       281 ~~~~l~~~~~  290 (372)
                      +...+.+-++
T Consensus        81 a~m~l~~~~~   90 (476)
T KOG0376|consen   81 AVMALGEFKK   90 (476)
T ss_pred             HHHhHHHHHH
Confidence            4444444333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.82  E-value=0.073  Score=50.48  Aligned_cols=126  Identities=10%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      .+..++......|-.-+-.|+|.+|.....++-+.-+..               ..+|.--|.+-..+|+++.|-.+..+
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---------------~l~~l~aA~AA~qrgd~~~an~yL~e  143 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---------------VLAYLLAAEAAQQRGDEDRANRYLAE  143 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---------------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            345678888889999999999999999988866543222               56677777888889999999999999


Q ss_pred             HHHhhccC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         230 ALQFASHF-ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       230 aL~~~~~~-~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      +-+    . +.++.-.+..++......|++..|...+..+++..|.++   .+.+....+....+.+..
T Consensus       144 aae----~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~---~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         144 AAE----LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP---EVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             Hhc----cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh---HHHHHHHHHHHHhccHHH
Confidence            986    4 334666788889999999999999999999999999999   888877777776666543

>KOG3785|consensus

Probab=96.79  E-value=0.0056  Score=57.10  Aligned_cols=115  Identities=12%  Similarity=-0.005  Sum_probs=62.4

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh------
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA------  234 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~------  234 (372)
                      .|-.+|..|+|++|+..|+-+.......               ..+..|+|-|++-+|.|.+|.....++-+..      
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~---------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLl  127 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAP---------------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLL  127 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCC---------------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            5778899999999999998877632111               3455566666666666666655444332100      


Q ss_pred             ----ccCC------------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         235 ----SHFA------------TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       235 ----~~~~------------p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                          -.++            .+...-.+.+|.+++..-.|.+|++.|.++|.-+|..-   .+.-.++.|.-++.
T Consensus       128 fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~---alNVy~ALCyyKlD  199 (557)
T KOG3785|consen  128 FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI---ALNVYMALCYYKLD  199 (557)
T ss_pred             HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh---hhHHHHHHHHHhcc
Confidence                0000            00111233344444455556666666666666555555   45555555544443

>KOG0545|consensus

Probab=96.78  E-value=0.004  Score=55.25  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC----CCC----------chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF----ATK----------DVKLFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~----~p~----------~~ka~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                      +.++...|+-++++|+|.+|...|..|+-+++.+    .|.          +.-.+.+.++|++..++|-++++....+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            4667788999999999999999999998654322    233          23368899999999999999999999999


Q ss_pred             hhcCCCc
Q psy8368         270 KLAAKDS  276 (372)
Q Consensus       270 ~l~p~~~  276 (372)
                      ..+|.|.
T Consensus       258 ~~~~~nv  264 (329)
T KOG0545|consen  258 RHHPGNV  264 (329)
T ss_pred             hcCCchH
Confidence            9999998

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.73  E-value=0.003  Score=38.90  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=13.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         245 FFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       245 ~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                      |.++|.+|..+|+|++|+.+|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.72  E-value=0.021  Score=49.12  Aligned_cols=106  Identities=9%  Similarity=-0.006  Sum_probs=81.3

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .-..+...|+-|++.|+++.|++.|.++..++...            ...+.++.++-.+.+-.++|..+..+..++-..
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34677899999999999999999999988875332            123677888888999999999999999999875


Q ss_pred             hccCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         234 ASHFATKDVKLFF--VWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       234 ~~~~~p~~~ka~~--r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      .+..++...+..+  -.|.+++..++|..|-..|..+..-
T Consensus       103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            5444433444433  3467778889999998888777543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2376|consensus

Probab=96.70  E-value=0.058  Score=53.60  Aligned_cols=94  Identities=12%  Similarity=0.102  Sum_probs=64.8

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF-----  233 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~-----  233 (372)
                      ++++-.+|+.+..++|+..++ .++-.+                 ..+..-.|+.++++++|++|+..|+..++-     
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~-----------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLDRLD-----------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-cccccc-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            577777888888888888776 221110                 234555788888888888888888877430     


Q ss_pred             ----------------------hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         234 ----------------------ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       234 ----------------------~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                                            .+....+...-+|+.|.++...|+|.+|++.+.+|++
T Consensus       145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                                  0000112455788999999999999999999999843

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.70  E-value=0.0017  Score=39.53  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=29.7

Q ss_pred             HHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy8368         177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD  225 (372)
Q Consensus       177 ~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~  225 (372)
                      +|++||++.|..               ...|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n---------------~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN---------------AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC---------------HHHHHHHHHHHHHCcCHHhhcC
Confidence            488999997766               7899999999999999999863

>KOG3081|consensus

Probab=96.69  E-value=0.041  Score=49.64  Aligned_cols=149  Identities=12%  Similarity=0.013  Sum_probs=98.6

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhh-------ccCC-ChHHHHHHHHHH----HHHHHHHHHHHHHc----cCH
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLIN-------TQVT-NYEDQMQLEEYL----CRVYRNLMVCYNNN----KQY  220 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~-------~~~~-~~~~~~~~~~l~----~~l~~Nla~~~~kl----~~y  220 (372)
                      .+..-|..+...++|++|+....+...+--.       .... -+-...+++.+.    -..++.+|.++.++    +.+
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence            4445677788889999998876552211000       0000 000011111111    13445577777664    458


Q ss_pred             HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         221 KLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       221 ~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                      .+|.-.|+.--.    .-|..+..+.-.|.|++.+++|++|...++.||..+++++   +....+--+-...+.......
T Consensus       190 qdAfyifeE~s~----k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp---etL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  190 QDAFYIFEELSE----KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP---ETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             hhHHHHHHHHhc----ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHhCCChHHHH
Confidence            888888888775    5677888999999999999999999999999999999999   888888877777766655555


Q ss_pred             HHHHhhccCCCC
Q psy8368         301 ARCMKMFSSSSS  312 (372)
Q Consensus       301 ~~~~~~~~~~~~  312 (372)
                      +....++..-+.
T Consensus       263 r~l~QLk~~~p~  274 (299)
T KOG3081|consen  263 RNLSQLKLSHPE  274 (299)
T ss_pred             HHHHHHHhcCCc
Confidence            555555544443

>KOG2053|consensus

Probab=96.66  E-value=0.042  Score=57.01  Aligned_cols=114  Identities=12%  Similarity=0.053  Sum_probs=90.3

Q ss_pred             HHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh
Q psy8368         164 NAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK  243 (372)
Q Consensus       164 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k  243 (372)
                      .....++|.+|+....+.++..|..               ..+..--|..++++|++++|. -|-+++.   -..+++.-
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~---------------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~---~~~~~D~~   78 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNA---------------LYAKVLKALSLFRLGKGDEAL-KLLEALY---GLKGTDDL   78 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHhcCchhHH-HHHhhhc---cCCCCchH
Confidence            3455688999999999998887664               234445678899999999999 6666665   35566777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                      .+--+-.||..++.+++|...|+++...+|+ .   +....+=.+.-+.+.|++.++
T Consensus        79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e---ell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   79 TLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E---ELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H---HHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999 6   677777777777777766554

>KOG1941|consensus

Probab=96.58  E-value=0.037  Score=51.98  Aligned_cols=144  Identities=14%  Similarity=0.236  Sum_probs=97.6

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc--------CCC-------hH-------------HHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ--------VTN-------YE-------------DQMQLEEYLCR  205 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~--------~~~-------~~-------------~~~~~~~l~~~  205 (372)
                      ++....+.|..++...++.+|+..+.+.|..++..-        .++       -+             ...+-...+..
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788888888899999988888876653321        000       00             01122234467


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFA-TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEI  281 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~-p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~  281 (372)
                      .+.|++..+-++.+|.+++.+|.-.+....+.. ..-..++.-+|.||..++.|+.+++.|++|+++.-++.   .--.+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            899999999999999999999999986322111 12345788899999999999999999999999866543   00012


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8368         282 DKEILKADLGNQQYQK  297 (372)
Q Consensus       282 ~~~l~~~~~~~~~~~~  297 (372)
                      --.|..+...++++.+
T Consensus       165 cv~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhhHHHHHHHHHhhhH
Confidence            3344455555555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.56  E-value=0.0042  Score=38.24  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ++.|+|.+|.++|+|++|+.+|+++|.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            478999999999999999999999775

>KOG2396|consensus

Probab=96.55  E-value=0.11  Score=50.83  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q psy8368         171 IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK  250 (372)
Q Consensus       171 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~  250 (372)
                      ...-+..|+.|+.-++..               ..++.+......+.+.|.+.-..|.++|.    .+|+++..|.-.|.
T Consensus        87 ~~rIv~lyr~at~rf~~D---------------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~----~Hp~~~dLWI~aA~  147 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGD---------------VKLWLSYIAFCKKKKTYGEVKKIFAAMLA----KHPNNPDLWIYAAK  147 (568)
T ss_pred             HHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCchhHHhhhh
Confidence            445566788888877664               68888888888888889999999999997    99999999999988


Q ss_pred             HHHhcCC-HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         251 ALIGLQE-WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       251 a~~~l~~-~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      =.+.-+. .+.|...|.++|+.+|+++   .++.+.-++.-.
T Consensus       148 wefe~n~ni~saRalflrgLR~npdsp---~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  148 WEFEINLNIESARALFLRGLRFNPDSP---KLWKEYFRMELM  186 (568)
T ss_pred             hHHhhccchHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHH
Confidence            8777765 9999999999999999999   777666555433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.45  E-value=0.071  Score=45.31  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=76.2

Q ss_pred             HHHhccCHHHHHHHHHHHHHhhhh-ccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-c
Q psy8368         164 NAFNDKNIVSAVRRYRDAVKLLIN-TQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-D  241 (372)
Q Consensus       164 ~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~  241 (372)
                      .++..|++..|...|.+++...+. .             .....+.+++..+...+++..|+..+.+++.    ..+. .
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~  201 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELN-------------ELAEALLALGALLEALGRYEEALELLEKALK----LNPDDD  201 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcc-------------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHh----hCcccc
Confidence            888899999999999999884432 1             0134555556668888899999999999987    6677 6


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ..++..++.++...+.+..|+..+..++...|...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  236 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA  236 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH
Confidence            88889999999999999999999999999988743

>KOG3824|consensus

Probab=96.41  E-value=0.028  Score=51.60  Aligned_cols=77  Identities=12%  Similarity=0.013  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      +.+-.|.|.-..+.|+.++|...+..||.    ++|+++.++.+.|.....-++.-+|-.+|-+||.++|.|.   ++.-
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns---eALv  188 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS---EALV  188 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch---HHHh
Confidence            34556778888899999999999999997    9999999999999999999999999999999999999998   5554


Q ss_pred             HHHH
Q psy8368         284 EILK  287 (372)
Q Consensus       284 ~l~~  287 (372)
                      .-.+
T Consensus       189 nR~R  192 (472)
T KOG3824|consen  189 NRAR  192 (472)
T ss_pred             hhhc
Confidence            4333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.40  E-value=0.18  Score=42.65  Aligned_cols=116  Identities=18%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhh
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV-CYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~-~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ..+...|......+.+..|+..+..++......               .......+. ++...+++..|+..+.+++.  
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--  158 (291)
T COG0457          96 EALLNLGLLLEALGKYEEALELLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALE--  158 (291)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence            344445555555555555555555555443221               111222223 78888888888888888875  


Q ss_pred             ccCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHHH
Q psy8368         235 SHFAT---KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK-DSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       235 ~~~~p---~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~-~~~~~~~~~~l~~~~~~~~  293 (372)
                        .+|   .....++.++..+...+++..|+..+.+++...+. ..   .....+..+.....
T Consensus       159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  216 (291)
T COG0457         159 --LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA---EALLNLGLLYLKLG  216 (291)
T ss_pred             --cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch---HHHHHhhHHHHHcc
Confidence              555   45666677777777888888888888888888888 45   55555555544443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.037  Score=50.23  Aligned_cols=85  Identities=21%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       201 ~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      .....+..|+=..|+..++|..|..+..+.|.    ++|.++..+--+|.+|..+|.+.-|++++...++..|+++....
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLD----LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHh----hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            34466788888999999999999999999997    99999999999999999999999999999999999999985555


Q ss_pred             HHHHHHHHH
Q psy8368         281 IDKEILKAD  289 (372)
Q Consensus       281 ~~~~l~~~~  289 (372)
                      ++..+..+.
T Consensus       254 ir~~l~~l~  262 (269)
T COG2912         254 IRAQLLELR  262 (269)
T ss_pred             HHHHHHHHH
Confidence            666655554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.33  E-value=0.058  Score=47.88  Aligned_cols=104  Identities=10%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhh
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ-------YKLTCDCASKALQFA  234 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~-------y~~Ai~~~~~aL~~~  234 (372)
                      +..+-....+..|+..|.-|+-..........        ..+.++..+|.+|..+++       +..|+..+.+|+..-
T Consensus        84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s--------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e  155 (214)
T PF09986_consen   84 PRDFSGERTLEEAIESYKLALLCAQIKKEKPS--------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE  155 (214)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            33666677899999999999876543221111        347889999999999998       445555555555411


Q ss_pred             cc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         235 SH--FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       235 ~~--~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      ..  ..-+....+|-+|..+..+|++++|+..|.+++..--
T Consensus       156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            00  0113467899999999999999999999999997643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.33  E-value=0.0088  Score=37.62  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      +.+++|+|.+|..+|+|.+|+.++++++.+...+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            4678899999999999999999999999755443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.29  E-value=0.03  Score=50.29  Aligned_cols=72  Identities=10%  Similarity=-0.034  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ...++|-|+..++.|+|.+|+..++.+.... ...|-..++.+-++.|+++.++|++|+..+++-+++.|+++
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            5678899999999999999999999998622 13344788999999999999999999999999999999988

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.28  E-value=0.12  Score=56.04  Aligned_cols=70  Identities=9%  Similarity=-0.026  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT----KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p----~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      ..++.++|.+++..|++..|...+.+++.+......    ...-.+..+|.++...|++++|...+.+++.+..
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            346678899999999999999999999875543321    1233455778889999999999999999988744

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.23  E-value=0.058  Score=52.78  Aligned_cols=159  Identities=15%  Similarity=0.059  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCh----------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         170 NIVSAVRRYRDAVKLLINTQVTNY----------EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       170 ~~~~A~~~y~~al~~~~~~~~~~~----------~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      -..+|...|++|++.-+..-....          .....-.+...-+...+|.|..++|+.++|++.+...++    ..|
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk----e~p  290 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK----EFP  290 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh----hCC
Confidence            368889999999887544221110          000011122355677899999999999999999999997    444


Q ss_pred             C--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc
Q psy8368         240 K--DVKLFFVWGKALIGLQEWTSAIKHLKTARKL-AAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQH  316 (372)
Q Consensus       240 ~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (372)
                      .  +...++++..+++.++.|.++...+.+--.+ -|+.+   .+-..-+.++-+.-..+...-...++-+....  -.+
T Consensus       291 ~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA---ti~YTaALLkaRav~d~fs~e~a~rRGls~ae--~~a  365 (539)
T PF04184_consen  291 NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA---TICYTAALLKARAVGDKFSPEAASRRGLSPAE--MNA  365 (539)
T ss_pred             ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH---HHHHHHHHHHHHhhccccCchhhhhcCCChhH--HHH
Confidence            4  6779999999999999999999888886433 24444   44433333322111000000000111111000  124


Q ss_pred             hHHHhhhhhhccCCCcccccc
Q psy8368         317 SNVVRIAYQEHEQVRPATLQE  337 (372)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~  337 (372)
                      ...++++..-+|.+++.-++.
T Consensus       366 veAi~RAvefNPHVp~YLLe~  386 (539)
T PF04184_consen  366 VEAIHRAVEFNPHVPKYLLEM  386 (539)
T ss_pred             HHHHHHHHHhCCCCchhhhcc
Confidence            566778888888887644443

The molecular function of this protein is uncertain.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.20  E-value=0.043  Score=41.53  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHH
Q psy8368         223 TCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD--SVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~--~~~~~~~~~l~~~~~~~~~~  295 (372)
                      .+..+++.+.    .+|++..+.|.+|.++...|++++|++.+..+++.+++.  .   .+++.+-.+-..++..
T Consensus         7 ~~~al~~~~a----~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~---~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALA----ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD---AARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC---HHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc---HHHHHHHHHHHHcCCC
Confidence            3566777886    899999999999999999999999999999999999866  5   5666666666555543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.18  E-value=0.14  Score=43.90  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      +.-++.+|.....+|+|.+|..+|.+++.   -+-.++...++-++++.+.++++..|...+++..+-+|... ..+-.-
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qals---G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd~~L  164 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALS---GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR-SPDGHL  164 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhc---cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-CCCchH
Confidence            35677899999999999999999999996   34556788899999999999999999999999999998643 113334


Q ss_pred             HHHHHHHHHHHHHHH---------------HHHHHHhhccCCC
Q psy8368         284 EILKADLGNQQYQKE---------------TKARCMKMFSSSS  311 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  311 (372)
                      .+++.....+.+...               .+..|..|+.+.+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qg  207 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQG  207 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            444444444443322               2456666666555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.18  E-value=0.051  Score=58.78  Aligned_cols=103  Identities=16%  Similarity=-0.012  Sum_probs=80.6

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..|..++..|++..|...+.+++...+..   +.       .......+++|.++...|++++|...+.+++.......+
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~  526 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLT---WY-------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV  526 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCc---cH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            45677888999999999999999864321   00       112346778999999999999999999999975544333


Q ss_pred             Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         240 KD--VKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       240 ~~--~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      ..  ..++..+|.++...|++++|...+.+++.+.
T Consensus       527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            32  3467788999999999999999999999874

>KOG1308|consensus

Probab=96.16  E-value=0.0018  Score=59.98  Aligned_cols=58  Identities=12%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +.-|.++.||.+|..++.    ++|.+...|-.|+.++++++....|+.+|..|++++|+..
T Consensus       125 ln~G~~~~ai~~~t~ai~----lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIE----LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             hcCcchhhhhcccccccc----cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            346789999999999997    9999999999999999999999999999999999999876

>smart00028 TPR Tetratricopeptide repeats

Probab=96.15  E-value=0.011  Score=33.86  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      .++.++|.|+..++++..|+.+++++++    .+|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~----~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE----LDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc----cCCC
Confidence            4678999999999999999999999997    6664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.05  E-value=0.1  Score=52.65  Aligned_cols=135  Identities=7%  Similarity=-0.065  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhhhhccCCChHHH-------HHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhhc
Q psy8368         171 IVSAVRRYRDAVKLLINTQVTNYEDQ-------MQLEEYLCRVYRNLMVCYNNNKQ--------YKLTCDCASKALQFAS  235 (372)
Q Consensus       171 ~~~A~~~y~~al~~~~~~~~~~~~~~-------~~~~~l~~~l~~Nla~~~~kl~~--------y~~Ai~~~~~aL~~~~  235 (372)
                      -..|..+|.+|..++...........       .++..-....+.-++.||.....        ...+.....+++.+  
T Consensus       336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al--  413 (517)
T PRK10153        336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL--  413 (517)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc--
Confidence            34677788888776543211100000       01111113455556666655432        34455555555431  


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      ..+|..+.+|.-+|..+...|++++|...|++|+.++| +.   .+...++++....++..++ ...|.+.+.....
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~---~a~~~lG~~~~~~G~~~eA-~~~~~~A~~L~P~  485 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SW---LNYVLLGKVYELKGDNRLA-ADAYSTAFNLRPG  485 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CH---HHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCC
Confidence            13677788999999999999999999999999999999 57   7888889888877766543 3445554444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.04  E-value=0.0095  Score=35.36  Aligned_cols=31  Identities=13%  Similarity=0.233  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      +++++|.||.++|++++|+..++++++    ..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~----~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIK----RYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH----HSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH----HCcC
Confidence            578999999999999999999999997    5565

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.92  E-value=0.1  Score=38.08  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+....+.|-.+|.+.+..+|+..++++++.....+            .+..++.-++.+|...|+|.+++.+...=+.+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778899999999999999999999998764431            23566777889999999999999999888876


Q ss_pred             hccCC
Q psy8368         234 ASHFA  238 (372)
Q Consensus       234 ~~~~~  238 (372)
                      ...++
T Consensus        73 A~ele   77 (80)
T PF10579_consen   73 AEELE   77 (80)
T ss_pred             HHHcc
Confidence            55443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2471|consensus

Probab=95.90  E-value=0.025  Score=54.96  Aligned_cols=125  Identities=14%  Similarity=0.054  Sum_probs=89.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ-F  233 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~-~  233 (372)
                      +..+.-+.+..|..|+|.+|.+.....-......-.-+.    ++  ..-..++|+|-.+++++.|.-++.++.+||+ .
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~----q~--~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~  313 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITP----QL--SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS  313 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccc----hh--hhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence            455666788888888888888776443221111100010    00  1134568999999999999999999999995 2


Q ss_pred             hcc-------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         234 ASH-------------FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       234 ~~~-------------~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      +..             ........+|+.|..|+..|+.-.|.++|.++.+.--.|+   -+|-.+++|
T Consensus       314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP---rlWLRlAEc  378 (696)
T KOG2471|consen  314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP---RLWLRLAEC  378 (696)
T ss_pred             HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc---HHHHHHHHH
Confidence            211             1233566899999999999999999999999999999998   777777765

>KOG1586|consensus

Probab=95.85  E-value=0.62  Score=41.47  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+-..||.|-.++++..|-..|.+|-.+--...+..+         ...+|.-.+.||-+- +..+|+.+.++++++
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhD---------aat~YveA~~cykk~-~~~eAv~cL~~aieI  102 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHD---------AATTYVEAANCYKKV-DPEEAVNCLEKAIEI  102 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence            3445555666666778888888888888776543321111         157788888888765 999999999999986


Q ss_pred             hccCCCC--chhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCc
Q psy8368         234 ASHFATK--DVKLFFVWGKALIG-LQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       234 ~~~~~p~--~~ka~~r~a~a~~~-l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +.....=  -++-+.-+|..|.. +.+++.|+.+|+.|-..-..+.
T Consensus       103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee  148 (288)
T KOG1586|consen  103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE  148 (288)
T ss_pred             HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence            6444221  22334456666654 5889999999999987655443

>KOG2796|consensus

Probab=95.83  E-value=0.38  Score=43.57  Aligned_cols=95  Identities=6%  Similarity=0.008  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         203 LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       203 ~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ...+...++...++.|+-+-|..+++.+-+....++..  +.-.+-+.+.+|...++|.+|...|.+++..||.++   .
T Consensus       211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~---~  287 (366)
T KOG2796|consen  211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA---V  287 (366)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch---h
Confidence            35678889999999999999999999666543334444  333455677778888999999999999999999998   7


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy8368         281 IDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~  300 (372)
                      +...-+.|..-.++...+.|
T Consensus       288 a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHH
Confidence            76666666665555544443

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.79  E-value=0.11  Score=50.56  Aligned_cols=125  Identities=12%  Similarity=0.128  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHH---HHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK---LTCDCAS  228 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~---~Ai~~~~  228 (372)
                      +.........|-.++..|+|.+|+..|+..|..++-....+..+..+++++...|..-+-.+-+.+.+-.   .....-.
T Consensus       201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k  280 (422)
T PF06957_consen  201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK  280 (422)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence            3444455667999999999999999999999988776666666777888887776554444444333211   1112222


Q ss_pred             HHHHhh---c--cCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         229 KALQFA---S--HFATKDVKLFFVWGKA-LIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       229 ~aL~~~---~--~~~p~~~ka~~r~a~a-~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +.++++   .  .++|.+.-.-+|.|.. .+++++|.-|...-++.|++.|...
T Consensus       281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~  334 (422)
T PF06957_consen  281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE  334 (422)
T ss_dssp             HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence            233221   1  1455555555555554 4788999999999999999999876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG2376|consensus

Probab=95.75  E-value=0.21  Score=49.81  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=76.3

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC----------ChHHHHHHH-----H--H-HHHHHHHHHHHHHHc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT----------NYEDQMQLE-----E--Y-LCRVYRNLMVCYNNN  217 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~-----~--l-~~~l~~Nla~~~~kl  217 (372)
                      ..+...-|.+...++|++|+..-.+.+...+.....          .+.-...+.     .  . .....+-.|.|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            455566667777777777777766666654322100          000000000     0  0 012235778999999


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         218 KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       218 ~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++.++|+.+++ .      +++...+++.-+|+.++.+++|++|+..|+...+-+.++.
T Consensus        93 nk~Dealk~~~-~------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   93 NKLDEALKTLK-G------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             ccHHHHHHHHh-c------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            99999999888 3      5667788899999999999999999999999888776655

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.70  E-value=0.15  Score=53.57  Aligned_cols=62  Identities=15%  Similarity=0.156  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      ..|+.+..++...|+++.|...+++.++    ++|++...|.-++.+|...|++++|.+.++...+
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~----~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYG----MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhC----CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3466666666677777777777777765    6677766777777777777777777777766654

>KOG1585|consensus

Probab=95.47  E-value=0.32  Score=43.51  Aligned_cols=134  Identities=10%  Similarity=0.086  Sum_probs=84.8

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC--C
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF--A  238 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~--~  238 (372)
                      ++-......+.++|+..|++++.++...         ....+-..++...+..+.+++.|.+|-..+.+-..+....  -
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~---------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y  186 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEED---------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY  186 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence            3444455566777777777777776432         1223335678888899999999999988777654322212  2


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      +.-.|++.-.-.+|+-..+|..|..+++...++..-+.     ...-..+...+..|.+......++++.
T Consensus       187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~-----sed~r~lenLL~ayd~gD~E~~~kvl~  251 (308)
T KOG1585|consen  187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK-----SEDSRSLENLLTAYDEGDIEEIKKVLS  251 (308)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC-----hHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence            44556777777778888899999999999887754332     112233344445555555555555543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.27  E-value=0.26  Score=37.49  Aligned_cols=69  Identities=13%  Similarity=0.103  Sum_probs=50.5

Q ss_pred             HHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368         164 NAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA  238 (372)
Q Consensus       164 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~  238 (372)
                      ...+.|+|..|+..+.+..++.........      .........|+|.++...|++++|+..+++|++++...+
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            345689999999999998887644321110      112245678899999999999999999999998664443

>KOG4340|consensus

Probab=95.27  E-value=0.34  Score=44.58  Aligned_cols=124  Identities=12%  Similarity=0.103  Sum_probs=73.0

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ----  232 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~----  232 (372)
                      .+--.|-.|+...+|..|..+|.+.-...|..               ....+--|+.+++.+.|..|+........    
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~---------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L  110 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPEL---------------EQYRLYQAQSLYKACIYADALRVAFLLLDNPAL  110 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH---------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHH
Confidence            34457889999999999999999987776543               11222223333333333333332221110    


Q ss_pred             ------------h-----------hccCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         233 ------------F-----------ASHFA-TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       233 ------------~-----------~~~~~-p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                                  +           .+.+. .+.+....+.|...++-|+|++|+.-|+.|++...-++   -+-..++.+
T Consensus       111 ~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp---llAYniALa  187 (459)
T KOG4340|consen  111 HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---LLAYNLALA  187 (459)
T ss_pred             HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc---hhHHHHHHH
Confidence                        0           00011 24555677777777888888888888888888777666   566666666


Q ss_pred             HHHHHHHHHH
Q psy8368         289 DLGNQQYQKE  298 (372)
Q Consensus       289 ~~~~~~~~~~  298 (372)
                      .-+.+++..+
T Consensus       188 Hy~~~qyasA  197 (459)
T KOG4340|consen  188 HYSSRQYASA  197 (459)
T ss_pred             HHhhhhHHHH
Confidence            5555555443

>KOG1585|consensus

Probab=95.25  E-value=2.2  Score=38.40  Aligned_cols=114  Identities=12%  Similarity=0.018  Sum_probs=74.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...++.|-..++|++|..+..+|++..+....+...         +..|-..+...-++..|.++..++++|..
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA---------AKayEqaamLake~~klsEvvdl~eKAs~   99 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA---------AKAYEQAAMLAKELSKLSEVVDLYEKASE   99 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            346667777788888899999999999999876554433221         34555566666778888888888888876


Q ss_pred             hhccC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         233 FASHF-ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       233 ~~~~~-~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      .+-.. .|+-+-.-.-+|-=..+.-+.++|+..|++++.+-..+
T Consensus       100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            44222 23322222333333445667888888888888775444

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.16  E-value=0.53  Score=51.70  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=70.5

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhh--hh----------c-cCCC-hHHHHHHHHHH-------HHHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLL--IN----------T-QVTN-YEDQMQLEEYL-------CRVYRNLMVCY  214 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~--~~----------~-~~~~-~~~~~~~~~l~-------~~l~~Nla~~~  214 (372)
                      ..+....+.|.+.|++++|+..|.+....-  +.          . .... ++....+..+.       ...|+.+..+|
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            456666666777777777777776655321  00          0 0000 00111111111       35677788888


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hcCCCc
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK--LAAKDS  276 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~--l~p~~~  276 (372)
                      .+.|++++|+..++.....  ...| +...|..+..+|...|++++|++.|.+...  +.|+..
T Consensus       695 ~k~G~~eeA~~lf~eM~~~--g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~  755 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKSI--KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI  755 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            8888888888888877541  1223 556777888888888888888888887654  345544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.13  E-value=0.033  Score=49.14  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=56.3

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ....+.++++.|.+.+.++|.    +-|.+.-.|||+|....+.|+++.|...|.+.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~----lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE----LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh----cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345567899999999999997    8899999999999999999999999999999999999875

>KOG4507|consensus

Probab=95.00  E-value=0.16  Score=50.69  Aligned_cols=99  Identities=11%  Similarity=-0.035  Sum_probs=79.9

Q ss_pred             hhHHHH-hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         161 SGKNAF-NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       161 ~Gn~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      .+..|. .+|+..+|+.+|..|+-+.+...             ....++.+|..+.+.|...+|--....|+.    --|
T Consensus       218 ~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~-------------kdi~lLSlaTiL~RaG~sadA~iILhAA~~----dA~  280 (886)
T KOG4507|consen  218 MASFYWRIKGEPYQAVECAMRALHFSSRHN-------------KDIALLSLATVLHRAGFSADAAVILHAALD----DAD  280 (886)
T ss_pred             HHHHHHHHcCChhhhhHHHHHHhhhCCccc-------------ccchhhhHHHHHHHcccccchhheeehhcc----CCc
Confidence            333443 58999999999999998865421             135677899999999999988888888875    334


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .-..-+|-++.++..+++|...+.+|..+++.+|...
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence            4455599999999999999999999999999999765

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.97  E-value=0.76  Score=50.47  Aligned_cols=26  Identities=8%  Similarity=-0.109  Sum_probs=12.3

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDA  181 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~a  181 (372)
                      ..+....+.+.+.|++++|...|.+.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM  568 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEM  568 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            33444444444445555555444444

>PLN03077 Protein ECB2; Provisional

Probab=94.72  E-value=0.58  Score=50.48  Aligned_cols=133  Identities=5%  Similarity=-0.106  Sum_probs=79.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhh--hhccC------------CChHHHHHHHHHH--------HHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLL--INTQV------------TNYEDQMQLEEYL--------CRVYRNLMV  212 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~--~~~~~------------~~~~~~~~~~~l~--------~~l~~Nla~  212 (372)
                      ...+....+.|.+.|+.++|+..|.+....-  |...+            ..++...-++.+.        ...|+.+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3457788888999999999999998866531  11000            0001111111111        235666667


Q ss_pred             HHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       213 ~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      +|.+.|++++|...+++.-     +.|+ ...|-.+-.++..-++.+.|....+++++++|++.   ...-.|..+....
T Consensus       634 ~l~r~G~~~eA~~~~~~m~-----~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~---~~y~ll~n~ya~~  704 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKMP-----ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV---GYYILLCNLYADA  704 (857)
T ss_pred             HHHhCCCHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHC
Confidence            7777777777777666532     3343 34455555566666777777777777777777777   6666666666555


Q ss_pred             HHHH
Q psy8368         293 QQYQ  296 (372)
Q Consensus       293 ~~~~  296 (372)
                      ++..
T Consensus       705 g~~~  708 (857)
T PLN03077        705 GKWD  708 (857)
T ss_pred             CChH
Confidence            5444

>KOG1915|consensus

Probab=94.71  E-value=1.4  Score=43.16  Aligned_cols=137  Identities=12%  Similarity=0.088  Sum_probs=101.3

Q ss_pred             hhHHHHHHHH----HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHH
Q psy8368         146 PAFAKVLKRA----QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK  221 (372)
Q Consensus       146 ~~~~~~~~~~----~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~  221 (372)
                      .+|+..++..    ..+...|.-=..++++..|-..|.+||......               ++++...+.|-++.+...
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vN  124 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVN  124 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHh
Confidence            4555545432    233445555556778888888888888775433               789999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         222 LTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKA  301 (372)
Q Consensus       222 ~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  301 (372)
                      .|....++|+.    +=|.--+.||.....-..+|+...|...|.+=+...|+..    ++...-+...+.+.. ...+.
T Consensus       125 hARNv~dRAvt----~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq----aW~sfI~fElRykei-eraR~  195 (677)
T KOG1915|consen  125 HARNVWDRAVT----ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ----AWLSFIKFELRYKEI-ERARS  195 (677)
T ss_pred             HHHHHHHHHHH----hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHhhHH-HHHHH
Confidence            99999999997    6688888999999889999999999999999999999865    444444443433333 33455


Q ss_pred             HHHhh
Q psy8368         302 RCMKM  306 (372)
Q Consensus       302 ~~~~~  306 (372)
                      .|.++
T Consensus       196 IYerf  200 (677)
T KOG1915|consen  196 IYERF  200 (677)
T ss_pred             HHHHH
Confidence            55554

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.66  E-value=0.45  Score=37.81  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      ++-..|+..++.+++-.|+-+|++|+.+........+.+..++-...+.-.-|+|..+..+|+-+=.++|.+-|-+..-+
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            45568999999999999999999999987665333333444444455556679999999999999999988766543333


Q ss_pred             CCCC
Q psy8368         237 FATK  240 (372)
Q Consensus       237 ~~p~  240 (372)
                      +-|.
T Consensus        83 LiPQ   86 (140)
T PF10952_consen   83 LIPQ   86 (140)
T ss_pred             hccC
Confidence            5454

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.54  E-value=0.39  Score=50.54  Aligned_cols=130  Identities=8%  Similarity=-0.060  Sum_probs=83.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh-----------------HHHHHHHHHH--------HHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY-----------------EDQMQLEEYL--------CRVYRN  209 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------------~~~~~~~~l~--------~~l~~N  209 (372)
                      ...+......|.+.|++++|+..|.+.+..-   ..|+.                 +...-++.+.        ...|+.
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~  467 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEG---VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC  467 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence            3456777778888888888888888765431   01110                 1111111111        125666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      +..+|.+.|++++|...+++..     ..| +...|..+..++...|+++.|...+++.++++|++.   .....|..+.
T Consensus       468 li~~l~r~G~~~eA~~~~~~~~-----~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~---~~y~~L~~~y  538 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRRAP-----FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL---NNYVVLLNLY  538 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC---cchHHHHHHH
Confidence            7777788888888887776542     334 445677778888888888888888888888888876   5566666665


Q ss_pred             HHHHHHH
Q psy8368         290 LGNQQYQ  296 (372)
Q Consensus       290 ~~~~~~~  296 (372)
                      ...++..
T Consensus       539 ~~~G~~~  545 (697)
T PLN03081        539 NSSGRQA  545 (697)
T ss_pred             HhCCCHH
Confidence            5555543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.44  E-value=0.091  Score=33.91  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         245 FFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       245 ~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .+.+|.+|..+|+++.|...++.++. .++.+
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~   32 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE-EGDEA   32 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence            36788888888888888888888883 44443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0549|consensus

Probab=94.38  E-value=0.039  Score=46.70  Aligned_cols=39  Identities=33%  Similarity=0.466  Sum_probs=35.1

Q ss_pred             EcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCC
Q psy8368          64 QLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC  102 (372)
Q Consensus        64 ~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~  102 (372)
                      .+|.+.++++++.++.+|..||+..+++||.++||..+.
T Consensus         2 ~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~   40 (188)
T KOG0549|consen    2 TLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR   40 (188)
T ss_pred             cccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence            467789999999999999999999999999999995443

>KOG2610|consensus

Probab=94.38  E-value=0.94  Score=42.48  Aligned_cols=103  Identities=9%  Similarity=-0.046  Sum_probs=66.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      +.....+-.++..|++.+|...+.+.|+-.|..-               ....-.-.+|+-+|+...-....++++.   
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl---------------la~kfsh~a~fy~G~~~~~k~ai~kIip---  165 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL---------------LAVKFSHDAHFYNGNQIGKKNAIEKIIP---  165 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh---------------hhhhhhhhHHHhccchhhhhhHHHHhcc---
Confidence            5566678888999999999999999998776541               1111111234445666666666666663   


Q ss_pred             cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .-+++-   .-..=-.+.++.+.|-|++|.+.-++|++++|.|.
T Consensus       166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence            113332   22333456777777888888888888888888776

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.34  E-value=0.3  Score=37.11  Aligned_cols=62  Identities=13%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         214 YNNNKQYKLTCDCASKALQFASHFATKD-----VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      .++.++|..|++...+..+....-....     .-|++++|.++...|++++|+..++.|+++...+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4568999999888888876443222222     4688999999999999999999999999987643

>KOG2114|consensus

Probab=94.31  E-value=1.4  Score=45.84  Aligned_cols=113  Identities=15%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc----CCChHHHHHHHHHHHHHH----------HHHHHHHHHccC
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ----VTNYEDQMQLEEYLCRVY----------RNLMVCYNNNKQ  219 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~----~~~~~~~~~~~~l~~~l~----------~Nla~~~~kl~~  219 (372)
                      .++.++..|+-+|++|+|++|...|-++|.+++...    -.+...-.++...+-.++          .-|-.||.|+++
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd  446 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD  446 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc
Confidence            467788999999999999999999999998764321    111111222222222211          124569999987


Q ss_pred             HHHHHHH------------HHHHHHhhccCCCCchhHHHHHH-----------HHHHhcCCHHHHHHHHHHH
Q psy8368         220 YKLTCDC------------ASKALQFASHFATKDVKLFFVWG-----------KALIGLQEWTSAIKHLKTA  268 (372)
Q Consensus       220 y~~Ai~~------------~~~aL~~~~~~~p~~~ka~~r~a-----------~a~~~l~~~e~A~~~~~~a  268 (372)
                      -++-..+            .+.|++++.  +.+...--+++|           ..+..+++|++|+.++...
T Consensus       447 ~~kL~efI~~~~~g~~~fd~e~al~Ilr--~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  447 VEKLTEFISKCDKGEWFFDVETALEILR--KSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             hHHHHHHHhcCCCcceeeeHHHHHHHHH--HhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence            5443332            334444331  112111111222           2345578899999888754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.31  E-value=1.6  Score=41.75  Aligned_cols=95  Identities=21%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..+..+...|+++.|...-..+++.--.     +           .++.  =.-..+.+++..=++..++.++    ..|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----~-----------~L~~--~~~~l~~~d~~~l~k~~e~~l~----~h~  325 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWD-----P-----------RLCR--LIPRLRPGDPEPLIKAAEKWLK----QHP  325 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccC-----h-----------hHHH--HHhhcCCCCchHHHHHHHHHHH----hCC
Confidence            3455566778888888887777764211     0           0000  0112345556666666666665    556


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +++-.++-+|..|++.+.|.+|..+|+.|++..|+..
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~  362 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS  362 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence            6666666666666666666666666666666666543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.19  E-value=0.86  Score=43.14  Aligned_cols=72  Identities=17%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH---------------
Q psy8368         200 EEYLCRVYRNLMVCYNNN------KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW---------------  258 (372)
Q Consensus       200 ~~l~~~l~~Nla~~~~kl------~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~---------------  258 (372)
                      ......++.-+|.-...+      +.+++++..+..+++    ++|.+.++|+..|..+..+=+.               
T Consensus       248 ~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  323 (352)
T PF02259_consen  248 KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK----LDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSE  323 (352)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH----hChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHH
Confidence            344556666777666666      778888888888887    8888888888888877654221               


Q ss_pred             --HHHHHHHHHHHhhcCCC
Q psy8368         259 --TSAIKHLKTARKLAAKD  275 (372)
Q Consensus       259 --e~A~~~~~~al~l~p~~  275 (372)
                        ..|+..|-+|+.+.+..
T Consensus       324 ~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  324 YLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             HHHHHHHHHHHHHhhCCCc
Confidence              33777777777777764

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.09  E-value=0.6  Score=36.53  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHH----HHHccCHHHHHHHHHHHHHhhcc
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVC----YNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~----~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+..+|.+|++-+|++.-+..+..-......+     .++.+.-.++..+|..    -.+.--..-++.++.++..    
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~----   72 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE----   72 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc----
Confidence            56789999999999999999887654432111     2333333444433332    1222235567778888886    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      +.|..+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus        73 Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   73 LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            888888888888888877888888888888888763

>KOG4814|consensus

Probab=93.97  E-value=0.35  Score=48.79  Aligned_cols=75  Identities=9%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH--FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~--~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ....++-|-|.-+++.++|..+++.|...++....  .+-..+|..-.++.||+.+.+.+.|+++++.|-+.+|.+.
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            33567778899999999999999999999974322  1223567777889999999999999999999999999998

>KOG3081|consensus

Probab=93.95  E-value=1.2  Score=40.46  Aligned_cols=69  Identities=13%  Similarity=0.059  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAI-KHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~-~~~~~al~l~p~~~  276 (372)
                      ..+.+-.|.|++.+++|++|....+.+|.    .+++++..+.++-.+-..+|.-.++. +.+.+....+|.++
T Consensus       207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~----kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  207 PLLLNGQAVCHLQLGRYEEAESLLEEALD----KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             hHHHccHHHHHHHhcCHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            35778899999999999999999999997    89999999999999988888766654 45556666788887

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.94  E-value=0.13  Score=31.95  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      .++.++|.+|..+|++++|+..+++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            478899999999999999999999998764

>KOG2300|consensus

Probab=93.91  E-value=1.8  Score=42.60  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      .|-....-+.|+.|..+|..|++....            .++.+.+..|+|..|+..++-    .++.++++   .+.|.
T Consensus       373 lGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld---~i~p~  433 (629)
T KOG2300|consen  373 LGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDA----EDLYKALD---LIGPL  433 (629)
T ss_pred             HhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccH----HHHHHHHH---hcCCC
Confidence            444444556788888888888876432            345688999999999997763    34455555   35555


Q ss_pred             c----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         241 D----------VKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       241 ~----------~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      |          .-++|-.|.-.+..+++.+|...+.+.|+..
T Consensus       434 nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  434 NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            3          2368888888899999999999999999987

>KOG0686|consensus

Probab=93.83  E-value=0.35  Score=46.25  Aligned_cols=101  Identities=20%  Similarity=0.157  Sum_probs=79.3

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh--
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA--  234 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~--  234 (372)
                      .+...|.-|...|++..|++.|.++-.++....            -.+..+.|+-.+-+-+++|.....+..+|...+  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK------------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            456788999999999999999999888874421            125677888888888999999999999998632  


Q ss_pred             -ccC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         235 -SHF-ATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       235 -~~~-~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                       ... ..-.+++..-.|.+++.++.|..|..+|..+.
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             001 11256678888999999999999999988775

>KOG1915|consensus

Probab=93.78  E-value=1.8  Score=42.44  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      -+++++++.+...|++-|.    .+|.|.-+|...|..-..||+.+.|...|.-|+.-..
T Consensus       447 ElqL~efDRcRkLYEkfle----~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  447 ELQLREFDRCRKLYEKFLE----FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHHhhHHHHHHHHHHHHh----cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            4578899999999999997    9999999999999999999999999999998886544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.76  E-value=0.69  Score=42.61  Aligned_cols=73  Identities=12%  Similarity=0.145  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         195 DQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       195 ~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      ....+.+....++..++..+...++++.++...++.+.    .+|-+-++|.++=.+|+..|+...|+..|++..++
T Consensus       144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIE----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34566677789999999999999999999999999997    99999999999999999999999999999998874

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.59  E-value=0.14  Score=31.83  Aligned_cols=30  Identities=13%  Similarity=0.307  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      ..|.++|.+-+..++|++|+.+|.+|+++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467888888888999999999999888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.57  E-value=0.67  Score=38.05  Aligned_cols=65  Identities=14%  Similarity=0.055  Sum_probs=54.1

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+...+..+...|++..|+..+.+++...|..               -.++..+-.||..+|++..|+..|.+..+.
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYD---------------EEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            45677778888999999999999999999997765               578888999999999999999999988653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.57  E-value=0.93  Score=45.28  Aligned_cols=73  Identities=8%  Similarity=-0.020  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .-.+...|..+...|+.++|+..+++++........-..-.+|.+|.+|+.+.+|++|..++.+..+.+.-..
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk  339 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK  339 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence            4567788999999999999999999998521111112344789999999999999999999999999766544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2471|consensus

Probab=93.35  E-value=0.12  Score=50.47  Aligned_cols=93  Identities=11%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHH-hhhhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVK-LLINTQ---VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~-~~~~~~---~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      -+.+.|-++|+.|.|.-+...|.+|++ .+....   .+... ..-...-...+++|.|..|+..|+.-.|.+++.++.+
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT-FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc-eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            345778888999999999999999996 432211   00000 0000111146789999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHh
Q psy8368         233 FASHFATKDVKLFFVWGKALIG  254 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~  254 (372)
                          .--.|+..|+|+|.|++.
T Consensus       364 ----vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 ----VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ----HHhcCcHHHHHHHHHHHH
Confidence                556788999999999875

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.27  E-value=6.7  Score=36.17  Aligned_cols=105  Identities=17%  Similarity=0.238  Sum_probs=74.3

Q ss_pred             HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhcc---CC--
Q psy8368         165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQFASH---FA--  238 (372)
Q Consensus       165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~~~~---~~--  238 (372)
                      ..++|+++.|..+|.++-...... .+      ........+++|.|...++.+ +|..|+.+.++|+++++.   .+  
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~-~~------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSL-DP------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcC-Cc------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            457899999999999998876411 11      122344778999999999999 999999999999997532   22  


Q ss_pred             -CC----chhHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCc
Q psy8368         239 -TK----DVKLFFVWGKALIGLQEWTS---AIKHLKTARKLAAKDS  276 (372)
Q Consensus       239 -p~----~~ka~~r~a~a~~~l~~~e~---A~~~~~~al~l~p~~~  276 (372)
                       |+    ..+.+.-++.+|...+.++.   |...++.+-.-.|+.+
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~  121 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP  121 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc
Confidence             22    23456678999998887654   4444445545556666

It is also involved in sporulation [].

>KOG1070|consensus

Probab=93.24  E-value=2.6  Score=46.48  Aligned_cols=102  Identities=17%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      |.++.-.+|.+.-|.|-   .-+.-.+.|.+|.++++.                ..+|..|+-.|.+-+.+++|.+.++.
T Consensus      1495 EKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~~ 1555 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYG---TEESLKKVFERACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLRL 1555 (1710)
T ss_pred             HHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            44444455555555443   333444556666666543                25566666666666666666666666


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      -++   .. -+..+.|.+.|..++..++-+.|...+.+||+.-|.
T Consensus      1556 m~K---KF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1556 MLK---KF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHH---Hh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            665   12 245556666666666666666666666666666665

>KOG1070|consensus

Probab=93.02  E-value=1.7  Score=47.76  Aligned_cols=77  Identities=8%  Similarity=0.035  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID  282 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~  282 (372)
                      ..|...|..+++..+-+.|.....+||+    .-|.  +.+..-.-|+.-++.|+-+.+...|+-.+.-.|.-.   ++|
T Consensus      1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~----~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt---DlW 1637 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALK----SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT---DLW 1637 (1710)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHh----hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch---hHH
Confidence            3444444444444444444444444444    2222  333333444444444444444444444444444444   444


Q ss_pred             HHHHHH
Q psy8368         283 KEILKA  288 (372)
Q Consensus       283 ~~l~~~  288 (372)
                      .-+...
T Consensus      1638 ~VYid~ 1643 (1710)
T KOG1070|consen 1638 SVYIDM 1643 (1710)
T ss_pred             HHHHHH
Confidence            444433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.96  E-value=1.4  Score=40.47  Aligned_cols=71  Identities=17%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368         194 EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA  268 (372)
Q Consensus       194 ~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a  268 (372)
                      ....-+..+...+++..|..|.+.|.|.+|+..|++++.    ++|-+...+.-+-..+..+|+--.|...|++-
T Consensus       269 dererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt----ldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         269 DERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT----LDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            345666777788888889999999999999999999997    88888888888888888899877776666654

>PLN03077 Protein ECB2; Provisional

Probab=92.91  E-value=1.8  Score=46.70  Aligned_cols=111  Identities=7%  Similarity=-0.016  Sum_probs=59.6

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------CChHHHHHHHHHH-------HHHHHHHHHHHHHcc
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------TNYEDQMQLEEYL-------CRVYRNLMVCYNNNK  218 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~l~-------~~l~~Nla~~~~kl~  218 (372)
                      ...-+.|.+.|++++|...|...    .....             ..++....++++.       ...|+.+-.+|.+.|
T Consensus       528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  603 (857)
T PLN03077        528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG  603 (857)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence            34567888899999999888664    11100             0001111111111       123444445566666


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         219 QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .+++|..+++...+.. .+.| +...|.-+..+|.+.|++++|.+.+++. .+.|+-.
T Consensus       604 ~v~ea~~~f~~M~~~~-gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~  658 (857)
T PLN03077        604 MVTQGLEYFHSMEEKY-SITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPA  658 (857)
T ss_pred             hHHHHHHHHHHHHHHh-CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH
Confidence            6666666666665210 1222 4456666777777777777777766654 3455533

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.88  E-value=1.4  Score=40.74  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=76.0

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhhccCCC
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-NKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-l~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..+..-+.+..+.|-..|.+|+......               ..+|...|..-+. .++...|...++.+++    .-|
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk----~f~   67 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLK----KFP   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHH----HHT
T ss_pred             HHHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HCC
Confidence            3344444455777888888887431111               3567777777555 5666669999999998    668


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      .+...|.....-+..+++.+.|...|++++..-|.......++..........+
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            888888888888889999999999999999876654412245555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.76  E-value=0.85  Score=40.47  Aligned_cols=43  Identities=9%  Similarity=-0.018  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh--HHHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK--LFFVWGKA  251 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k--a~~r~a~a  251 (372)
                      ..+.+-+|..+.++|++++|+.++.+++.     +++..+  .+.++|+-
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~-----~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIG-----SKKASKEPKLKDMARD  209 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHc-----CCCCCCcHHHHHHHHH
Confidence            45777899999999999999999999994     555555  66666654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.41  E-value=1.6  Score=43.15  Aligned_cols=57  Identities=19%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                      +-+.+|+|.|..++|+..+|++.++..++..|.+. ...++..|-.+.-.++.|.+.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHHHHHHHHHHhcCCHHHHH
Confidence            44667899999999999999999999999988632 1268888888888888886554

The molecular function of this protein is uncertain.

>KOG3824|consensus

Probab=92.23  E-value=0.58  Score=43.28  Aligned_cols=79  Identities=11%  Similarity=0.090  Sum_probs=64.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..-...+....+.|+.++|...|.-|+.+.+..               ..++...|...-.-++.-+|-.+|-+||.  
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~---------------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--  178 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTN---------------PQILIEMGQFREMHNEIVEADQCYVKALT--  178 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC---------------HHHHHHHhHHHHhhhhhHhhhhhhheeee--
Confidence            3333345566778899999999999999998766               46677777777777888899999999996  


Q ss_pred             ccCCCCchhHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKAL  252 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~  252 (372)
                        ++|.|.+|+.+++...
T Consensus       179 --isP~nseALvnR~RT~  194 (472)
T KOG3824|consen  179 --ISPGNSEALVNRARTT  194 (472)
T ss_pred             --eCCCchHHHhhhhccc
Confidence              9999999999988654

>KOG3364|consensus

Probab=92.15  E-value=1.3  Score=35.92  Aligned_cols=41  Identities=12%  Similarity=0.032  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW  248 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~  248 (372)
                      ..|.+-+|..+.++++|++++.+++..|+    .+|+|..|.--.
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~----~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLE----TEPNNRQALELK  111 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHh----hCCCcHHHHHHH
Confidence            46777899999999999999999999998    899998876543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=91.97  E-value=2.8  Score=38.76  Aligned_cols=99  Identities=12%  Similarity=0.035  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG-LQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~-l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      +|..+..+..+.+..+.|...+.+|++    ..+.....|...|..-.. .++.+-|...|+++++.-|.+.   .++..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~---~~~~~   75 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP---DFWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---HHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---HHHHH
Confidence            455556667777779999999999995    555578889999998555 6777779999999999999998   77777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         285 ILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .......+.+. ...|..+.+.+.....
T Consensus        76 Y~~~l~~~~d~-~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   76 YLDFLIKLNDI-NNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHTT-H-HHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHhCcH-HHHHHHHHHHHHhcCc
Confidence            76666665543 5667777777666443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.82  E-value=8.1  Score=37.88  Aligned_cols=74  Identities=11%  Similarity=0.120  Sum_probs=56.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHHH
Q psy8368         211 MVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEIDKEILKAD  289 (372)
Q Consensus       211 a~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~  289 (372)
                      |..++..|+|.+|..++.=..+    ++| ++.+|--+|.|++...+|++|..++...   -|++. .-+.+.+.+.-|+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~----iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCq  540 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTK----IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQ  540 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHH----hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHH
Confidence            4556778999999999998887    888 8999999999999999999999988754   34332 1224555555555


Q ss_pred             HHH
Q psy8368         290 LGN  292 (372)
Q Consensus       290 ~~~  292 (372)
                      +-+
T Consensus       541 Kh~  543 (549)
T PF07079_consen  541 KHL  543 (549)
T ss_pred             Hhh
Confidence            544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.77  E-value=0.42  Score=44.23  Aligned_cols=78  Identities=12%  Similarity=0.143  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV-WGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID  282 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r-~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~  282 (372)
                      ..++...++...+.+.|.+.-..|.++|+    ..|.|+..|.- -+.-|...++++.|...|.++++++|.++   .++
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~----khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p---~iw  179 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLT----KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP---RIW  179 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc---hHH
Confidence            46777778888889999999999999997    99999998876 55667888999999999999999999999   776


Q ss_pred             HHHHHH
Q psy8368         283 KEILKA  288 (372)
Q Consensus       283 ~~l~~~  288 (372)
                      .+.-++
T Consensus       180 ~eyfr~  185 (435)
T COG5191         180 IEYFRM  185 (435)
T ss_pred             HHHHHH
Confidence            655544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.53  E-value=3.1  Score=40.46  Aligned_cols=68  Identities=12%  Similarity=0.040  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCC
Q psy8368         202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK-LFFVWGKALI-GLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k-a~~r~a~a~~-~l~~~e~A~~~~~~al~l~p~  274 (372)
                      ..+++++.+|-||+.+++|.+|+..+..+|-..     ...| .+..+.--|- -.+..+.....+--++.+.|.
T Consensus       162 ~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi-----~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  162 CHISTYYYVGFAYLMLRRYADAIRTFSQILLYI-----QRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            447889999999999999999999999999411     1111 1111211111 134556777778888888885

>KOG0292|consensus

Probab=91.50  E-value=3.8  Score=43.14  Aligned_cols=120  Identities=9%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHH-
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-------QYKLT-  223 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-------~y~~A-  223 (372)
                      +.......++|-.+...|+|.+|+++|+.+|-.++-.-..+..+..+.+++...+..-+....+.+.       ....+ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            5667778889999999999999999999998776554444555566666666655333333222221       23333 


Q ss_pred             -HH-HHHHHHHhhccCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         224 -CD-CASKALQFASHFATKDV-KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       224 -i~-~~~~aL~~~~~~~p~~~-ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       +. |+.. .+    ++|-+. -|+--.-.++.++++|..|-..-.+.+++.|..+
T Consensus      1068 ElAaYFt~-~~----Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1068 ELAAYFTH-CK----LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred             HHHHHhhc-CC----CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence             11 2222 22    555543 3444445678999999999999999999999888

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.42  E-value=2.6  Score=33.57  Aligned_cols=74  Identities=5%  Similarity=-0.147  Sum_probs=57.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +-++--....+...|+|.+++..-.+||.+++.-....++    --.+.+.+.+|+|.++-.+|+.++|+..++.+-+
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd----eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD----EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc----cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4566667788889999999999999999999764322221    2346678889999999999999999999999876

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.23  E-value=2.7  Score=30.48  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      .+.+..+-.++-.+=+.|+|.+|+.+|+.|+..+-..
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            3567778888899999999999999999999988554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.99  E-value=5.2  Score=37.72  Aligned_cols=129  Identities=16%  Similarity=0.011  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...+..+.+.|+|+.|.....++....+.....           ...+..-.|..+...|+..+|+......++
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445677888999999999999999998888764222111           124455566677777888888887777765


Q ss_pred             -hhccC-----------------------------CCCchhHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 -FASHF-----------------------------ATKDVKLFFVWGKALIGL------QEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 -~~~~~-----------------------------~p~~~ka~~r~a~a~~~l------~~~e~A~~~~~~al~l~p~~~  276 (372)
                       .....                             .....++++.+|.-...+      +.+++++..|..|.+++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence             11100                             011356788888887777      899999999999999999998


Q ss_pred             cHHHHHHHHHHHHHHHHHH
Q psy8368         277 VRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~  295 (372)
                         .++..++.....+-..
T Consensus       293 ---k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  293 ---KAWHSWALFNDKLLES  308 (352)
T ss_pred             ---HHHHHHHHHHHHHHHh
Confidence               7777777766555433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.99  E-value=3.8  Score=44.24  Aligned_cols=114  Identities=14%  Similarity=-0.019  Sum_probs=82.8

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-------NKQYKLTCDCAS  228 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-------l~~y~~Ai~~~~  228 (372)
                      -......+.++..+.|+.|+..|++.-..+|.-....            .+.+.+|...+.       ...+.+|+.-++
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (932)
T PRK13184        476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY------------EAQFRLGITLLEKASEQGDPRDFTQALSEFS  543 (932)
T ss_pred             eecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch------------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHH
Confidence            3445667888899999999999999888776543221            223333443332       135777777777


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      +.-     -.|.-+--|.-.|.+|..+|+|++-+++|..|++.-|+++   .+-..-..+-
T Consensus       544 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  596 (932)
T PRK13184        544 YLH-----GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP---EISRLRDHLV  596 (932)
T ss_pred             Hhc-----CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---ccHHHHHHHH
Confidence            665     4667777899999999999999999999999999999999   5554444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.53  E-value=3.8  Score=34.41  Aligned_cols=84  Identities=8%  Similarity=-0.089  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      +..+..+..+-++.++..++...+...-    .+.|+++..-.--|..++..|+|.+|+..|+.+..-.|..+   -++.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALr----vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kA   82 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALR----VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKA   82 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHH
Confidence            4556666777778888888777666443    37899999999999999999999999999999999999998   8888


Q ss_pred             HHHHHHHHHHH
Q psy8368         284 EILKADLGNQQ  294 (372)
Q Consensus       284 ~l~~~~~~~~~  294 (372)
                      .+.-|....++
T Consensus        83 LlA~CL~~~~D   93 (160)
T PF09613_consen   83 LLALCLYALGD   93 (160)
T ss_pred             HHHHHHHHcCC
Confidence            89888765543

>KOG2053|consensus

Probab=89.90  E-value=2.3  Score=44.65  Aligned_cols=97  Identities=13%  Similarity=-0.001  Sum_probs=74.9

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      -+|-.+++.|++++|. ..-+++.....    ++          ...+.-+..||..++++++|...|++++.    .+|
T Consensus        48 LkaLsl~r~gk~~ea~-~~Le~~~~~~~----~D----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~----~~P  108 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEAL-KLLEALYGLKG----TD----------DLTLQFLQNVYRDLGKLDEAVHLYERANQ----KYP  108 (932)
T ss_pred             HHHHHHHHhcCchhHH-HHHhhhccCCC----Cc----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hCC
Confidence            3567788889999888 33344443322    12          23455567899999999999999999998    888


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      + -+-++.+-.||.+-++|.+=...--+..+..|+++
T Consensus       109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            8 88999999999999999887777777777888876

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=89.56  E-value=3.8  Score=28.98  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      ++.+..+-..|..+=+.|+|.+|+.+|..|+..+...
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3566777788888888999999999999999988543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.46  E-value=1.2  Score=27.25  Aligned_cols=33  Identities=9%  Similarity=0.093  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHH--HHHHHhhcCCC
Q psy8368         243 KLFFVWGKALIGLQEWTSAIKH--LKTARKLAAKD  275 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~A~~~--~~~al~l~p~~  275 (372)
                      +.++-+|..+...|+|++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3566677777788888888888  44777777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.39  E-value=4.4  Score=37.46  Aligned_cols=55  Identities=13%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKT  267 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~  267 (372)
                      --+.-.+..+++.+|...+..++.    ..|.+..+..-++.||...|+.+.|...|..
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~----~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQ----AAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHH----hCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            345667789999999999999998    8999999999999999999999887665543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.36  E-value=6.8  Score=34.04  Aligned_cols=141  Identities=14%  Similarity=0.123  Sum_probs=82.6

Q ss_pred             hhHHHHhcc---CHHHHHHHHHHHHHhhhhccCCChHHHHHHHH------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         161 SGKNAFNDK---NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEE------YLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       161 ~Gn~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~------l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      .|-.|+...   +...|...|.+++..+.............+..      .-.....-+|..+...+++++|+...+.+|
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            444555444   45588899999998875332211111111111      112234557788889999999999999999


Q ss_pred             HhhccCCC-Cchh--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         232 QFASHFAT-KDVK--LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       232 ~~~~~~~p-~~~k--a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      .    ... .+.+  +-.|+|.+...+|.+++|+..+.....  ++-.  +-+....+.+.-..+ .+...+..|.+.+.
T Consensus       117 ~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~--~~~~elrGDill~kg-~k~~Ar~ay~kAl~  187 (207)
T COG2976         117 A----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWA--AIVAELRGDILLAKG-DKQEARAAYEKALE  187 (207)
T ss_pred             c----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHH--HHHHHHhhhHHHHcC-chHHHHHHHHHHHH
Confidence            5    222 2444  567999999999999999987765421  1111  011122222333222 23456677777665


Q ss_pred             CC
Q psy8368         309 SS  310 (372)
Q Consensus       309 ~~  310 (372)
                      ..
T Consensus       188 ~~  189 (207)
T COG2976         188 SD  189 (207)
T ss_pred             cc
Confidence            54

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.23  E-value=4.8  Score=29.30  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      +.+..+-..|..+=+.|+|.+|+.+|..|++++-.
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45777778888889999999999999999998854

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.09  E-value=3.8  Score=29.90  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      ..+..+...|..+=+.|+|.+|+.+|.+||..+...
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~   39 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV   39 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            456777788889999999999999999999988553

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.02  E-value=4.3  Score=29.33  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      ++.+..+...|...=..|+|.+|+.+|.+|+..+-..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   39 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            5678888889999999999999999999999988553

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.86  E-value=10  Score=32.54  Aligned_cols=68  Identities=13%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      ...+..+|.-|.+.|+++.|++.|.++.+..  ..+. ....++++-.+....+++..+..++.+|..+-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999998622  1222 456788999999999999999999999988744

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK10941 hypothetical protein; Provisional

Probab=88.59  E-value=4.6  Score=37.14  Aligned_cols=76  Identities=11%  Similarity=0.013  Sum_probs=61.5

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      +.+.=..+.+.++|..|+.+-...+.+.|..               ..-+..+|.+|.+++.+..|+.+++.-++    .
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---------------p~e~RDRGll~~qL~c~~~A~~DL~~fl~----~  244 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPED---------------PYEIRDRGLIYAQLDCEHVALSDLSYFVE----Q  244 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH----h
Confidence            3445567889999999999999999997765               35566799999999999999999999997    6


Q ss_pred             CCCchhHHHHHHHHH
Q psy8368         238 ATKDVKLFFVWGKAL  252 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~  252 (372)
                      .|+.+.+-.-+.++.
T Consensus       245 ~P~dp~a~~ik~ql~  259 (269)
T PRK10941        245 CPEDPISEMIRAQIH  259 (269)
T ss_pred             CCCchhHHHHHHHHH
Confidence            777777665554443

>KOG1550|consensus

Probab=88.54  E-value=8.2  Score=39.47  Aligned_cols=92  Identities=15%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             HHhhHHHHhcc-----CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHH
Q psy8368         159 GASGKNAFNDK-----NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK---QYKLTCDCASKA  230 (372)
Q Consensus       159 k~~Gn~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~---~y~~Ai~~~~~a  230 (372)
                      ...|..|++..     ++..|+..|.+|-..-.                 .....++|.||..-.   ++..|..++..|
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-----------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A  354 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-----------------PDAQYLLGVLYETGTKERDYRRAFEYYSLA  354 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-----------------chHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence            34677777632     67888888888876532                 357778999998755   688999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcC
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGL----QEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l----~~~e~A~~~~~~al~l~p  273 (372)
                      .+      -.+..|++++|.||..-    .+...|..++++|.+..+
T Consensus       355 a~------~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  355 AK------AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             HH------cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            75      57889999999999753    588999999999999883

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.51  E-value=4.3  Score=29.47  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      +..+..+...|...=..|+|.+|+.+|..||+.+-.
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            456777777888888899999999999999999855

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.17  E-value=4.5  Score=29.33  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      ++.+..+...|...=..|+|++|+.+|..||+++-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456777888888889999999999999999998855

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=88.07  E-value=9.5  Score=34.13  Aligned_cols=120  Identities=13%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             HhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhhccC-CCCchh
Q psy8368         166 FNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY-KLTCDCASKALQFASHF-ATKDVK  243 (372)
Q Consensus       166 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y-~~Ai~~~~~aL~~~~~~-~p~~~k  243 (372)
                      |..|+|..|+..-.-||..--..|..-   ....-.+.+.-..+-|....+.|+- +-..  ......+.... =|+.+.
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~--~~~~~~l~~~~dmpd~vr  168 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYF--LRVFLDLTTEWDMPDEVR  168 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhcCCCChHHH
Confidence            456889999999999998743322110   1112223344455566666666652 1111  11122211111 144444


Q ss_pred             HHH--HHHHHHH---------hcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         244 LFF--VWGKALI---------GLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       244 a~~--r~a~a~~---------~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      |-+  -.|.+++         ..++...|+..|++|++++|+-.    ++..+.++.++++.
T Consensus       169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G----VK~~i~~l~~~lr~  226 (230)
T PHA02537        169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG----VKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHhh
Confidence            444  4455552         34678899999999999998765    88888888887763

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.83  E-value=0.79  Score=25.66  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLK  266 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~  266 (372)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.83  E-value=4.5  Score=38.94  Aligned_cols=73  Identities=18%  Similarity=0.152  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc-----cC-----CCC---------------chhHHHHHHHHHHhcCCH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFAS-----HF-----ATK---------------DVKLFFVWGKALIGLQEW  258 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~-----~~-----~p~---------------~~ka~~r~a~a~~~l~~~  258 (372)
                      +..+..++..+...|++..|...+++||=.++     ..     ++.               -..|++|....+...|-+
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~  119 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW  119 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence            67888899999999999999999999984432     11     111               133899999999999999


Q ss_pred             HHHHHHHHHHHhhcCC-Cc
Q psy8368         259 TSAIKHLKTARKLAAK-DS  276 (372)
Q Consensus       259 e~A~~~~~~al~l~p~-~~  276 (372)
                      .-|++..+-.+.+||. |+
T Consensus       120 rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen  120 RTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             HHHHHHHHHHHhcCCCCCc
Confidence            9999999999999998 66

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.43  E-value=1.5  Score=27.23  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      .+|..+|.+.+..++|.+|+.++.++|++..
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3677899999999999999999999998543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.22  E-value=2  Score=39.22  Aligned_cols=62  Identities=6%  Similarity=-0.124  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         223 TCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      |+.+|.+|+.    +.|.+...|..+|..+...|+.=.|+-+|-+++-..-..+   .++..|..+-.+
T Consensus         1 A~~~Y~~A~~----l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~---~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIR----LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP---SARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH----H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H---HHHHHHHHHHHH
T ss_pred             CHHHHHHHHH----hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHH
Confidence            6789999998    8999999999999999999999999999999998765566   777777777665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=86.51  E-value=1.4  Score=39.27  Aligned_cols=60  Identities=12%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         163 KNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       163 n~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      ..+++.++...|.+.|.+|+.+.+.+               ..-+..++....|.|+++.|...++++|+    +||.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~----ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLE----LDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHc----CCccc
Confidence            35677899999999999999997766               67888999999999999999999999998    88774

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.04  E-value=11  Score=34.02  Aligned_cols=88  Identities=6%  Similarity=-0.078  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC--CCchhHHHHHHH
Q psy8368         173 SAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA--TKDVKLFFVWGK  250 (372)
Q Consensus       173 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~--p~~~ka~~r~a~  250 (372)
                      ..+..+.+|+..+....         ...+...+...+|.-|+++|+|++|+.+++.++.....-.  .-....+.++..
T Consensus       156 ~iI~lL~~A~~~f~~~~---------~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~  226 (247)
T PF11817_consen  156 LIIELLEKAYEQFKKYG---------QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE  226 (247)
T ss_pred             HHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            34555555555543321         1334467788999999999999999999999986331111  013446778899


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q psy8368         251 ALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       251 a~~~l~~~e~A~~~~~~al  269 (372)
                      |+..+|+.+..+...-+.+
T Consensus       227 Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  227 CAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHhCCHHHHHHHHHHHh
Confidence            9999999998887765543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.84  E-value=4.8  Score=36.51  Aligned_cols=65  Identities=12%  Similarity=0.039  Sum_probs=52.0

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ..+.|..++..|+|.+|+..|+.+...+..  ..|.       .+...++..+..|+.++|+.+..+..|-+.+
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~-------~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWW-------SLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            347999999999999999999999655432  1222       2446788899999999999999999988765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.75  E-value=9.6  Score=27.37  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      ++.+..+-..|...=..|+|.+|+.+|..|+..+-..
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~   39 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4566677778888888899999999999999988553

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG3617|consensus

Probab=85.70  E-value=25  Score=37.22  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHH----------HHHHHHHHHHHHHHHHHHHHHccC
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYED----------QMQLEEYLCRVYRNLMVCYNNNKQ  219 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~----------~~~~~~l~~~l~~Nla~~~~kl~~  219 (372)
                      +++.++..++..-..|-+.=++--+.+.|..|+.++..-..+-.++          ..--...+..++..+|.|++++|.
T Consensus      1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence            3667777666666555555555566667888998875432111000          011122345677889999999999


Q ss_pred             HHHHHHHHHHH
Q psy8368         220 YKLTCDCASKA  230 (372)
Q Consensus       220 y~~Ai~~~~~a  230 (372)
                      |..|-+-+.+|
T Consensus      1161 Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1161 YHAATKKFTQA 1171 (1416)
T ss_pred             hHHHHHHHhhh
Confidence            99999988766

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.59  E-value=1.6  Score=42.44  Aligned_cols=62  Identities=11%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHH----HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         209 NLMVCYNNNKQYKLTCDCASKAL----QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       209 Nla~~~~kl~~y~~Ai~~~~~aL----~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      -+...+.-+|+|..|++..+..-    .+.....+.++-.+|..|.||+.+++|.+|+..|...|-
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556777999999998876441    011123344777899999999999999999999998873

>KOG2047|consensus

Probab=85.55  E-value=48  Score=34.25  Aligned_cols=140  Identities=14%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---------------------------CCChHH--HHHH-----H
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---------------------------VTNYED--QMQL-----E  200 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---------------------------~~~~~~--~~~~-----~  200 (372)
                      ..-+...+.-|.+.|.|++|-..|.+|++..-...                           ..+.+.  .-++     .
T Consensus       248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            45566788999999999999999999986531110                           001111  1111     1


Q ss_pred             HHH--HHHHHHHHH--------------HHHHccCHHHHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHhcCCHH
Q psy8368         201 EYL--CRVYRNLMV--------------CYNNNKQYKLTCDCASKALQFASHFATKD-----VKLFFVWGKALIGLQEWT  259 (372)
Q Consensus       201 ~l~--~~l~~Nla~--------------~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----~ka~~r~a~a~~~l~~~e  259 (372)
                      .++  ..++.|--.              +-+..+++.+-+..|..|++   ..+|..     ...|...|+.|...|+.+
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~---~vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK---TVDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH---ccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            111  112222111              12224678889999999997   677763     346788999999999999


Q ss_pred             HHHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHHHHHHHH
Q psy8368         260 SAIKHLKTARKLAAKDS-VRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       260 ~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      .|...|.+|.+..-... -.+.++-.-+....+.+..+.
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~  443 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA  443 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence            99999999999865432 223666666665555555443

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=85.23  E-value=12  Score=26.98  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      +..+..+...|..+=..|++.+|+.+|..|+..+...
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~   41 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEG   41 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4667777888888888999999999999999988553

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.91  E-value=13  Score=28.02  Aligned_cols=49  Identities=8%  Similarity=-0.183  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHHHHhcC
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWGKALIGLQ  256 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~--~ka~~r~a~a~~~l~  256 (372)
                      ....+.+|.+++..|+|++|+..+-.+++    .++++  -.+.-.+-.++..+|
T Consensus        22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~----~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen   22 LDARYALADALLAAGDYEEALDQLLELVR----RDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHC----C-TTCCCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccccccHHHHHHHHHHHHcC
Confidence            57888999999999999999999999997    66664  333333444444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=84.41  E-value=8.5  Score=37.08  Aligned_cols=68  Identities=10%  Similarity=0.079  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHH---ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhc
Q psy8368         205 RVYRNLMVCYNN---NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL---------QEWTSAIKHLKTARKLA  272 (372)
Q Consensus       205 ~l~~Nla~~~~k---l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l---------~~~e~A~~~~~~al~l~  272 (372)
                      .+....|.++.+   .|+.++|+..+..++.   ...+.++..+.-.|.+|-.+         ..++.|+..|.++.+++
T Consensus       180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~---~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  180 NIKFQYAFALNRRNKPGDREKALQILLPVLE---SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             HHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            345567777777   9999999999999775   36667888888888888643         24789999999999999


Q ss_pred             CCC
Q psy8368         273 AKD  275 (372)
Q Consensus       273 p~~  275 (372)
                      |+.
T Consensus       257 ~~~  259 (374)
T PF13281_consen  257 PDY  259 (374)
T ss_pred             ccc
Confidence            864

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.39  E-value=48  Score=34.34  Aligned_cols=114  Identities=16%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhHHHH-hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAF-NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ..+......|+.++ .-.+++.|..+..+++.+....         .+.+++..+.+-++.+|.+.+... |+..+++++
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I  126 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH---------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI  126 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            45677777888888 5678999999999999887541         233444566666789999888877 999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHH--hcCCHHHHHHHHHHHHhhc--CCCc
Q psy8368         232 QFASHFATKDVKLFFVWGKALI--GLQEWTSAIKHLKTARKLA--AKDS  276 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~--~l~~~e~A~~~~~~al~l~--p~~~  276 (372)
                      +..+...-..+.-.||+-++..  ..+++..|++.++....+.  ..+.
T Consensus       127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~  175 (608)
T PF10345_consen  127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP  175 (608)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence            8554443345556666654422  2379999999999999887  3554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.26  E-value=1.5  Score=24.47  Aligned_cols=24  Identities=8%  Similarity=-0.157  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCAS  228 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~  228 (372)
                      .++.++|..+..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            357899999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=83.75  E-value=19  Score=36.43  Aligned_cols=79  Identities=18%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHH-HHHHHHhhccCCCCchhHHHHH------HHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDC-ASKALQFASHFATKDVKLFFVW------GKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~-~~~aL~~~~~~~p~~~ka~~r~------a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ..++.|++.++...+....++.. +..++.    ..|+|......+      ++....+++..++..++.++..+.|.++
T Consensus       101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~  176 (620)
T COG3914         101 CPAVQNLAAALELDGLQFLALADISEIAEW----LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP  176 (620)
T ss_pred             chHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence            57899999888877765555554 444776    778887766665      8888899999999999999999999998


Q ss_pred             cHHHHHHHHHHHH
Q psy8368         277 VRAEIDKEILKAD  289 (372)
Q Consensus       277 ~~~~~~~~l~~~~  289 (372)
                         .+...+.-..
T Consensus       177 ---~~~~~~~~~r  186 (620)
T COG3914         177 ---RVLGALMTAR  186 (620)
T ss_pred             ---hhHhHHHHHH
Confidence               6655555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=83.49  E-value=19  Score=34.72  Aligned_cols=121  Identities=12%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      .+..+|+.|+..++......+-+..++                    -.++..|.....-+-++.-.+++-++. .+.|+
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~ePH--------------------P~ia~lY~~ar~gdta~dRlkRa~~L~-slk~n  327 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKAEPH--------------------PDIALLYVRARSGDTALDRLKRAKKLE-SLKPN  327 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhcCCC--------------------hHHHHHHHHhcCCCcHHHHHHHHHHHH-hcCcc
Confidence            445556666666666655555554333                    246677777777677777777665422 57899


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         241 DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       241 ~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      |....+-++.+-+.-|+|..|...-+.+...+|...    +.-++..+...---...+.++...+.
T Consensus       328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES----AYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh----HHHHHHHHHhhccCchHHHHHHHHHH
Confidence            999999999999999999999999999999999865    55555555544312223344444443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.41  E-value=14  Score=32.87  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .-+++-+...+||.....-++    .+|.+.-...-+-+.|.-.|+|+.|+.-++-+-+++|++.
T Consensus         9 seLL~~~sL~dai~~a~~qVk----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVK----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHh----cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            356778899999999999998    8899888888888999999999999999999999999998

>KOG2300|consensus

Probab=83.27  E-value=40  Score=33.56  Aligned_cols=123  Identities=12%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC------
Q psy8368         167 NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK------  240 (372)
Q Consensus       167 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~------  240 (372)
                      -+|-|++|.++-.++|......+..+- ...-+.-+...++-++..|-+-.|+|.+|+.....+.+++... |.      
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~-~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~-p~~~Llr~  364 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADL-MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF-PTPLLLRA  364 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccc-hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CchHHHHH
Confidence            456777888877888877655433221 3345556667888899999999999999998887777654322 33      


Q ss_pred             -chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         241 -DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       241 -~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                       .+..++-+|.-....+.|+.|...|..|.++-..-...+-+.-.++-..-+
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~  416 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR  416 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Confidence             344566667777777888999999998888765543333444444444433

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.24  E-value=24  Score=36.59  Aligned_cols=112  Identities=12%  Similarity=0.062  Sum_probs=84.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-----CCC------hHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-----VTN------YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLT  223 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-----~~~------~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~A  223 (372)
                      +-.+.--|-.+...+....|.+.+.+|++.+....     .+.      .....-...++..++..++.|.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            45566667777778888899999999998886643     000      1123345566778888899999999999999


Q ss_pred             HHHHHHHHHhhccCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHH
Q psy8368         224 CDCASKALQFASHFA-----TKDVKLFFVWGKALIGLQEWTSAIKHLK  266 (372)
Q Consensus       224 i~~~~~aL~~~~~~~-----p~~~ka~~r~a~a~~~l~~~e~A~~~~~  266 (372)
                      ......+........     .-.+..+|-.|..+...|+.+.|+..|.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            999998876332221     1257789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1464|consensus

Probab=82.71  E-value=20  Score=32.90  Aligned_cols=129  Identities=17%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..|+.+|..+.|.+--...++.-..+...   +.++.......+..+|.---+.|...++..+-...|.++|.+..++..
T Consensus       150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~e---dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH  226 (440)
T KOG1464|consen  150 KLGKLYFDRGEYTKLQKILKQLHQSCQTE---DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH  226 (440)
T ss_pred             hHhhhheeHHHHHHHHHHHHHHHHHhccc---cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence            46778888877776655555444443322   112222222333455555567788888888888899999975544422


Q ss_pred             CchhHHHHH--HHHHHhcCCHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHHHHH
Q psy8368         240 KDVKLFFVW--GKALIGLQEWTSAIKHLKTARKLA--AKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       240 ~~~ka~~r~--a~a~~~l~~~e~A~~~~~~al~l~--p~~~~~~~~~~~l~~~~~~  291 (372)
                      .-.-...|-  |+.|+.-|+|++|..+|-.|++--  ..++++..+.+.|-.+...
T Consensus       227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANML  282 (440)
T KOG1464|consen  227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML  282 (440)
T ss_pred             hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHH
Confidence            222233333  678899999999999999999853  3444555666666554443

>KOG2610|consensus

Probab=82.54  E-value=7.2  Score=36.81  Aligned_cols=53  Identities=15%  Similarity=-0.050  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSA  261 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A  261 (372)
                      -++.-.|-|+...|-|++|.+..+++|+    +++.+.-|..-.+-++...+++.++
T Consensus       176 Yv~GmyaFgL~E~g~y~dAEk~A~ralq----iN~~D~Wa~Ha~aHVlem~~r~Keg  228 (491)
T KOG2610|consen  176 YVHGMYAFGLEECGIYDDAEKQADRALQ----INRFDCWASHAKAHVLEMNGRHKEG  228 (491)
T ss_pred             HHHHHHHhhHHHhccchhHHHHHHhhcc----CCCcchHHHHHHHHHHHhcchhhhH
Confidence            3445577888899999999999999997    7776655444444444444444333

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.50  E-value=17  Score=26.68  Aligned_cols=66  Identities=17%  Similarity=0.026  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---C---CChHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---V---TNYEDQMQLEEYLCRVYRNLMVCYNNN  217 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---~---~~~~~~~~~~~l~~~l~~Nla~~~~kl  217 (372)
                      .+.|..+.+.|-.+=..|+.++|+.+|++|+..+....   .   ...+.+.....++...-.|++.+-.++
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46677777788888888999999999999999885531   1   123456666666666666666655444

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG1497|consensus

Probab=82.30  E-value=24  Score=33.11  Aligned_cols=91  Identities=12%  Similarity=0.145  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC------Cchh--HHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q psy8368         200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT------KDVK--LFFVWGKALIGLQEWTSAIKHLKTARK-  270 (372)
Q Consensus       200 ~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p------~~~k--a~~r~a~a~~~l~~~e~A~~~~~~al~-  270 (372)
                      .+....+...+|..|-+-++|..|.....-+-     ++.      .+.|  .+.|+|.+|+..++-.+|..+..++-- 
T Consensus        99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~-----~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil  173 (399)
T KOG1497|consen   99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGIP-----LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASIL  173 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC-----cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            35557899999999999999999887665332     322      1223  467899999999999999999999854 


Q ss_pred             -hcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         271 -LAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       271 -l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                       .+..|.   .+.-++..|+.+.-+++.+
T Consensus       174 ~a~~~Ne---~Lqie~kvc~ARvlD~krk  199 (399)
T KOG1497|consen  174 QAESSNE---QLQIEYKVCYARVLDYKRK  199 (399)
T ss_pred             hhcccCH---HHHHHHHHHHHHHHHHHHH
Confidence             355777   8888888888777666543

>KOG2047|consensus

Probab=81.34  E-value=11  Score=38.51  Aligned_cols=105  Identities=10%  Similarity=0.071  Sum_probs=72.5

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      -.-+.|+.+-...-|++|.+.|.+++.+++...         ..++ -..|+-....-+.-...+.|...+++||+   .
T Consensus       513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~---------v~di-W~tYLtkfi~rygg~klEraRdLFEqaL~---~  579 (835)
T KOG2047|consen  513 IIINYAMFLEEHKYFEESFKAYERGISLFKWPN---------VYDI-WNTYLTKFIKRYGGTKLERARDLFEQALD---G  579 (835)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc---------HHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHh---c
Confidence            334667777777889999999999999986531         1112 22344444445555678999999999998   4


Q ss_pred             CCCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         237 FATKDVKLFFV-WGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       237 ~~p~~~ka~~r-~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      +.|..+|..|- .|+.-..-|--..|+..|++|-..-+.
T Consensus       580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~  618 (835)
T KOG2047|consen  580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE  618 (835)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence            55778886664 355556667778888888887655443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=81.17  E-value=20  Score=34.93  Aligned_cols=87  Identities=10%  Similarity=0.060  Sum_probs=59.2

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhhcc---C-CCCch----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         211 MVCYNNNKQYKLTCDCASKALQFASH---F-ATKDV----------KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       211 a~~~~kl~~y~~Ai~~~~~aL~~~~~---~-~p~~~----------ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      |..+++.+.|..|..-+..+|++++.   + .|..+          -.--.+..||+.+++.+-|+....+.+-++|.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            44455667777777777777764421   1 11111          1344689999999999999999999999999887


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         277 VRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                         --+-..+.|.+++..|.++.+
T Consensus       263 ---rnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  263 ---RNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHH
Confidence               444445556666666666654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=80.86  E-value=27  Score=33.75  Aligned_cols=70  Identities=19%  Similarity=0.034  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       201 ~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      ..+..++.-.|...+. -+...|..+..++++    +.|+.+-+-.--+++++..|+.-++-..++.+-+.+|.-
T Consensus       227 R~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         227 RSRAVLLTAKAMSLLD-ADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             HHHHHHHHHHHHHHhc-CChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            3445555555555543 458899999999998    999999999999999999999999999999999998863

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=80.80  E-value=19  Score=28.28  Aligned_cols=84  Identities=13%  Similarity=0.064  Sum_probs=57.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhhccCCCCch---hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhcCCC
Q psy8368         210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDV---KLFFVWGKALIGLQE-----------WTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~---ka~~r~a~a~~~l~~-----------~e~A~~~~~~al~l~p~~  275 (372)
                      +|.-++..|++-+|+...+..+.    ..+++.   -.+..-|.++..+..           +-.|++++.++..+.|.-
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHH----HccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            56778999999999999999996    555544   334445777765542           345899999999999987


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         276 SVRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                      +   ....+++.-.....-|++..+
T Consensus        78 A---~~L~~la~~l~s~~~Ykk~v~   99 (111)
T PF04781_consen   78 A---HSLFELASQLGSVKYYKKAVK   99 (111)
T ss_pred             H---HHHHHHHHHhhhHHHHHHHHH
Confidence            6   666566555444444444433

>KOG2581|consensus

Probab=80.64  E-value=7.4  Score=37.55  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ..+.+-+-.||+.-+.|+.|-....++.-  +....+  .+.-+|..|++..-..+|+.|.++|..|+...|++.
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            34455566788888999999888887762  112223  344466789999999999999999999999999865

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.52  E-value=19  Score=29.93  Aligned_cols=82  Identities=10%  Similarity=-0.064  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                      .+..+..+-+...+..++....+. |+   .+.|++...-.--|..|+..|+|.+|+..|+....-.+..+   -.+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdA-Lr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p---~~kAL~   84 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDA-LR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP---YGKALL   84 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHH-HH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch---HHHHHH
Confidence            334444455557777776665553 33   47899999999999999999999999999999888888877   778888


Q ss_pred             HHHHHHHHH
Q psy8368         286 LKADLGNQQ  294 (372)
Q Consensus       286 ~~~~~~~~~  294 (372)
                      .-|...+++
T Consensus        85 A~CL~al~D   93 (153)
T TIGR02561        85 ALCLNAKGD   93 (153)
T ss_pred             HHHHHhcCC
Confidence            888766543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.10  E-value=3.9  Score=29.71  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      +.+..+...|...=..|+|++|+..|..|++++-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            56677777888888899999999999999999865

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		2e-12
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		3e-11
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		6e-11
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-06
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		1e-10
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		1e-10
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-10
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		2e-10
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		6e-10
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-09
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		5e-06
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		1e-09
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		1e-09
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-09
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		2e-09
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		2e-09
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-08
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-08
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-08
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-07
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-07
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-07
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		8e-07
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		3e-06
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		2e-05
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		6e-05
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		7e-05
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		2e-04
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-04
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		4e-04
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		4e-04
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		5e-04
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		6e-04
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		7e-04
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		8e-04
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		8e-04
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		9e-04

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           D  ++K +  +G G+     A V V Y  Y E  + P D  Y RK+ P   +LG    + 
Sbjct: 25  DRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITLW 83
Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
             E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F
Sbjct: 84  GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +DG ++K IK++G G   P  G  V+VHY+   E N    D +  R      F LG   +
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLE-NGTKFDSSRDRGD-QFSFNLGRGNV 69
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           I  ++  + +M KGE ++F    +  +G  G PP+IP  A L+FEV L  +S
Sbjct: 70  IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 121

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     AN    D ++ R   P  F +G   +
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKL-ANGKKFDSSHDRNE-PFVFSIGKGQV 86
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +GA G  P+IP+ A L FEV L++F
Sbjct: 87  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 137

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 29/258 (11%)
Query: 7   GKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
           G++ ++DG ++++ K +G G  NP  GA VQ+H            D   +  ++ E    
Sbjct: 139 GEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLE--GRCGGRVFDCRDVAFTVGE---- 192
Query: 66  GSSGLIP-AFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSI 123
           G    IP   + A+  MQ+ E+          FG  G P   I   A+L++EV L +F  
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF-- 250
Query: 124 DPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVK 183
             +  + S ++++     ++E+ A  K           G   F     V AV +Y   V 
Sbjct: 251 --EKAKESWEMDTK---EKLEQAAIVK---------EKGTVYFKGGKYVQAVIQYGKIVS 296
Query: 184 LLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK 243
            L      + ++    E +L   + NL +CY   ++Y    +C  KAL   S     + K
Sbjct: 297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEK 352
Query: 244 LFFVWGKALIGLQEWTSA 261
             +  G+A + + E+ SA
Sbjct: 353 GLYRRGEAQLLMNEFESA 370

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 28  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 81
Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ A+ +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 82  KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 82
Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ AI +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 83  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 33  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 86
Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ AI +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 87  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
           QD  ++K IK +G G E P++G  V VHY  +       +D T    S+  +    F LG
Sbjct: 49  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 102
Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              +I A++ AI +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 103 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 157

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 12  QDGKLMKKIKEKGFG--EN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS 68
           +DG ++K I  KG G  EN P  G  V VHY+   E++    D +  R ++P +F LG  
Sbjct: 13  EDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRER-NVPFKFHLGQG 71
Query: 69  GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
            +I  ++  + SM K EK       +  +G  GC   IP  + L+FE+ LI+F
Sbjct: 72  EVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F LG   +
Sbjct: 29  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 86
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M++GE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 87  IKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 137

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 29/258 (11%)
Query: 7   GKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
           G++  +DG ++++ K KG G  NP  GA V++H            D   +  ++ E    
Sbjct: 139 GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLE--GRCGGRMFDCRDVAFTVGE---- 192
Query: 66  GSSGLIP-AFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSI 123
           G    IP   + A+  MQ+ E+   +      FG  G P   I   A+L++EV L +F  
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF-- 250
Query: 124 DPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVK 183
             +  + S ++++     ++E+ A  K           G   F     + AV +Y   V 
Sbjct: 251 --EKAKESWEMDTK---EKLEQAAIVK---------EKGTVYFKGGKYMQAVIQYGKIVS 296
Query: 184 LLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK 243
            L      + ++    E +L   + NL +CY   ++Y    +C  KAL   S     + K
Sbjct: 297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEK 352
Query: 244 LFFVWGKALIGLQEWTSA 261
             +  G+A + + E+ SA
Sbjct: 353 GLYRRGEAQLLMNEFESA 370

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F LG   +
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 90
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 91  IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F LG   +
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 90
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 91  IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F LG   +
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 90
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 91  IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F LG   +
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 74
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 75  IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12  QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY     +N    D ++ R   P  F LG   +
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 74
Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 75  IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 15  KLMKKIKEKGFG-ENPVLGAHVQVHY-MYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           +L KK+   G G   P  G  V VHY   + +  +   D +  R   P +F LG+  +I 
Sbjct: 25  QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGK-PFQFTLGAGEVIK 81
Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
            ++  + +M  GEK+ F   Y+L +G  G PP IP KA L+FEV L+
Sbjct: 82  GWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 27  ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEK 86
           + P +G  V+VHY      +    D +  R     +F+LG   +I  ++  I +M+KGE 
Sbjct: 41  DTPEVGDEVEVHYTGTL-LDGKKFDSSRDRDDT-FKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 87  SDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           + F    EL +G  G PP IPA A L F+V L++++
Sbjct: 99  ALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 134

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 27  ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEK 86
           + P +G  V+VHY      +    D +  R     +F+LG   +I  ++  I +M+KGE 
Sbjct: 25  DTPEVGDEVEVHYTGTL-LDGKKFDSSRDRDDT-FKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 87  SDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           + F    EL +G  G PP IPA A L F+V L++++
Sbjct: 83  ALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 9   EQIQDGKLMKKIKEKG-FGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
           E   DG ++K I +KG  GE   P  G  V VHY+   E+     D ++ R ++P +F L
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDR-NVPFKFHL 69
Query: 66  GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
               +I  ++  + SM+K EK          +G  GC   IP  + LLFE+ L++F
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 9   EQIQDGKLMKKIKEKG-FGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
           E   DG ++K I +KG  GE   P  G  V VHY+   E+     D ++ R ++P +F L
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDR-NVPFKFHL 69
Query: 66  GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
               +I  ++  + SM+K EK          +G  GC   IP  + LLFE+ L++F
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 28  NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLGSSGLIPAFEYAILSMQK 83
           +P+      V +M+Y    E   D T    S+P+     F LG+  +I  ++  +L M +
Sbjct: 2   SPIKSRKGDVLHMHYTGKLE---DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCE 58
Query: 84  GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
           GEK       EL +G  G PP+IP  A L+FEV L+
Sbjct: 59  GEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)
Query: 10  QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
           ++ D K+ K+I ++G G  P   +   +HY  + + ++   + T+  +  P    LG   
Sbjct: 45  EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103
Query: 70  L-IPAFEYAILSMQKGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINFSIDPQ 126
             +      + SM+ GE++     +EL +G  G    P +P  ADLL+EV +I F    +
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163
Query: 127 VVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLI 186
               S        D  VEE   A     A      G + F ++ +  A+++Y  A+  + 
Sbjct: 164 GKARS--------DMTVEERIGA-----ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 187 NTQV----TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDV 242
           +  +      Y+D     +  C +  N+  C    K+Y    D A            K+ 
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHL--NIAACLIKLKRY----DEAIGHCNIVLTEEEKNP 264
Query: 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-SVRAEI 281
           K  F  GKA   L +  SA    + A+K A  D ++R E+
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 33/263 (12%)
Query: 4   VPYGKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
           VP G    +DG ++++I+ +G G   P  GA V+V    Y +      D  + ++ +  R
Sbjct: 15  VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK------DKLFDQREL--R 66
Query: 63  FQLGSS---GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHL 118
           F++G      L    E AI  M+KGE S  +      FG++G    +IP  A+L +E+HL
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
            +F    +  + S ++ S   + ++E+    K           G   F +     A+ +Y
Sbjct: 127 KSF----EKAKESWEMNS---EEKLEQSTIVK---------ERGTVYFKEGKYKQALLQY 170
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238
           +  V  L      + E+  + +      + NL +C+   + +    +  +KAL+  S+  
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-- 228
Query: 239 TKDVKLFFVWGKALIGLQEWTSA 261
             + K  F  G+A + + ++  A
Sbjct: 229 --NEKGLFRRGEAHLAVNDFELA 249

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 10  QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
           ++ D K+ K+I ++G G  P   +   +HY  + + ++   + T+  +  P    LG   
Sbjct: 45  EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103
Query: 70  L-IPAFEYAILSMQKGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINF 121
             +      + SM+ GE++     +EL +G  G    P +P  ADLL+EV +I F
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 57  KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
           ++ P +F++G   +I  FE     M  G+++    + ++ +GA G P  IP  A L+F+V
Sbjct: 42  RNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDV 101
Query: 117 HLINF 121
            L+N 
Sbjct: 102 ELLNL 106

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 29/238 (12%)
Query: 4   VPYGKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
           VP G    +DG ++++I+ +G G   P  GA V+V    Y +      D  + ++ +  R
Sbjct: 15  VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK------DKLFDQREL--R 66
Query: 63  FQLGSS---GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHL 118
           F++G      L    E AI   +KGE S  +      FG++G    +IP  A+L +E+HL
Sbjct: 67  FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
            +F    +  + S +  S   + ++E+    K           G   F +     A+ +Y
Sbjct: 127 KSF----EKAKESWEXNS---EEKLEQSTIVK---------ERGTVYFKEGKYKQALLQY 170
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
           +  V  L      + E+  + +      + NL +C+   + +    +  +KAL+  S+
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 57  KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
           ++ P +F LG   +I  FE  +  M  G+++    S +  +GA G P  IP  A L+F+V
Sbjct: 42  RNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
            L+  
Sbjct: 102 ELLKL 106

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 57  KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
           K+ P +F LG   +I  +E  +  M  G+++    S +  +GA G P  IP  A L+F+V
Sbjct: 42  KNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGVPGIIPPHATLVFDV 101
Query: 117 HLINF 121
            L+  
Sbjct: 102 ELLKL 106

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 29  PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
           P  G    VHY    E  +  +D +  R   P +F LG   +I  +E  +  M  G+++ 
Sbjct: 16  PKRGQTCVVHYTGMLEDGK-KVDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAK 73
Query: 89  FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              S +  +GA G P  IP  A L+F+V L+  
Sbjct: 74  LTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 56  RKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLF 114
           + + P  F++G   +I  ++ A+L+M KGEK+      E  +G  G P  +IP  A L F
Sbjct: 49  KNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTF 108
Query: 115 EVHLIN 120
           EV L++
Sbjct: 109 EVELVD 114

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 56  RKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLF 114
           + + P  F++G   +I  ++ A+L+M KGEK+      E  +G  G P  +IP    L+F
Sbjct: 52  KNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIF 111
Query: 115 EVHLIN 120
           EV L++
Sbjct: 112 EVELVD 117

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 29  PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
           P  G    VHY    E  +  +D +  R   P +F LG   +I  +E  +  M  G+++ 
Sbjct: 16  PKRGQTCVVHYTGMLEDGK-KMDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAK 73
Query: 89  FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              S +  +GA G P  IP  A L+F+V L+  
Sbjct: 74  LTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 29  PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
           P  G    VHY    E  +   D +  R   P +F LG   +I  +E  +  M  G+++ 
Sbjct: 16  PKAGQTCVVHYTGMLEDGK-KFDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAK 73
Query: 89  FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              S +  +GA G P  IP  A L+F+V L+  
Sbjct: 74  LTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57  KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
           ++ P +F LG   +I  +E  +  M  G+++    S +  +GA G P  IP  A L+F+V
Sbjct: 42  RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
            L+  
Sbjct: 102 ELLKL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57  KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
           ++ P +F LG   +I  +E  +  M  G+++    S +  +GA G P  IP  A L+F+V
Sbjct: 44  RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 103
Query: 117 HLINF 121
            L+  
Sbjct: 104 ELLKL 108

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57  KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
           ++ P +F LG   +I  +E  +  M  G+++    S +  +GA G P  IP  A L+F+V
Sbjct: 42  RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
            L+  
Sbjct: 102 ELLKL 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-41
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-36
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-19
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	4e-25
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-21
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-21
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	3e-20
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-18
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-18
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-16
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-15
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	6e-18
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	7e-18
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	5e-17
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-17
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-16
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-16
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	6e-16
2ppn_A	107	FK506-binding protein 1A; high resolution protein	8e-16
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-15
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	3e-15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-15
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-14
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	2e-13
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	2e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-13
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	5e-11
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-10
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	2e-10
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	1e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	4e-06
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	2e-05
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	3e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	8e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	2e-04

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  152 bits (385), Expect = 2e-43
 Identities = 59/311 (18%), Positives = 114/311 (36%), Gaps = 26/311 (8%)

Query: 10  QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
           ++ D K+ K+I ++G G  P   +   +HY  + + ++   + T+  +  P    LG   
Sbjct: 45  EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103

Query: 70  -LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVHLINFSIDPQ 126
             +      + SM+ GE++     +EL +G  G      +P  ADLL+EV +I F    +
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163

Query: 127 VVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLI 186
                             +    + +  A      G + F ++ +  A+++Y  A+  + 
Sbjct: 164 -------------GKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210

Query: 187 NTQVTNY--EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL 244
           +  +     + Q          + N+  C    K+Y       +  L        K+ K 
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE----KNPKA 266

Query: 245 FFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCM 304
            F  GKA   L +  SA    + A+K A  D     I +E+       +   ++ K    
Sbjct: 267 LFRRGKAKAELGQMDSARDDFRKAQKYAPDD---KAIRRELRALAEQEKALYQKQKEMYK 323

Query: 305 KMFSSSSSPSQ 315
            +F        
Sbjct: 324 GIFKGKDEGGA 334

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  146 bits (369), Expect = 5e-41
 Identities = 65/354 (18%), Positives = 131/354 (37%), Gaps = 39/354 (11%)

Query: 4   VPYGKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
           VP G    +DG ++++I+ +G G   P  GA V+V    Y +  +   D          R
Sbjct: 15  VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK--DKLFD------QRELR 66

Query: 63  FQLG---SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHL 118
           F++G   +  L    E AI  M+KGE S  +      FG++G    +IP  A+L +E+HL
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126

Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
            +F    +                  E    + L+++  +   G   F +     A+ +Y
Sbjct: 127 KSFEKAKES----------------WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170

Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238
           +  V  L      + E+  + +      + NL +C+   + +    +  +KAL+  S   
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--- 227

Query: 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298
             + K     G+A + + ++  A    +   +L   +        ++       ++    
Sbjct: 228 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRRQLAR 283

Query: 299 TKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDV 352
            K     MF      ++  N  +      +      ++E Q +  +      + 
Sbjct: 284 EKKLYANMFERL---AEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVET 334

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  135 bits (340), Expect = 6e-36
 Identities = 55/353 (15%), Positives = 113/353 (32%), Gaps = 35/353 (9%)

Query: 1   MVPVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIP 60
           ++           G + +  ++     NP  GA V++H                      
Sbjct: 134 LLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFD--------CRD 185

Query: 61  ERFQLG---SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEV 116
             F +G      +    + A+  MQ+ E+   +      FG  G P   I   A+L++EV
Sbjct: 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEV 245

Query: 117 HLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVR 176
            L +F    +        + +      E+                G   F     + AV 
Sbjct: 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEK----------------GTVYFKGGKYMQAVI 289

Query: 177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
           +Y   V  L      + ++    E +L   + NL +CY   ++Y    +C  KAL   S 
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348

Query: 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296
               + K  +  G+A + + E+ SA    +   ++  ++        +I       +++ 
Sbjct: 349 ---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQKKAKEHN 402

Query: 297 KETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEESNESDG 349
           +  +     MF   +         +   ++  +             E  + +G
Sbjct: 403 ERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPEG 455

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 88.6 bits (219), Expect = 2e-19
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 3/135 (2%)

Query: 13  DGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
           D  ++K +K  G G E P++G  V VHY      N    D ++ R   P  F LG   +I
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQVI 87

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSS 131
            A++  + +M++GE        E  +G+ G  P+IP+ A L FE+ L++F  +       
Sbjct: 88  KAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGG 147

Query: 132 ADIESDFIDSQVEEP 146
               +         P
Sbjct: 148 IIRRTKRKGEGYSNP 162

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 97.7 bits (244), Expect = 4e-25
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 12  QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
            D  ++K +  +G G+     A V V Y  Y E  + P D  Y RK+ P   +LG    +
Sbjct: 24  GDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITL 82

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
              E  +LSM++GE + F       +G LGCPP IP    +LFE+ L++F
Sbjct: 83  WGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 86.5 bits (215), Expect = 4e-21
 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 12  QDGKLMKKIKEKGFGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
            +G L KK    G   +  PV G  V VH     E      + T +++     F LG   
Sbjct: 11  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCD 64

Query: 70  LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           +I A + ++  M  GE +   A  + C+G  G  P IP  A L  EV L    
Sbjct: 65  VIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 88.4 bits (219), Expect = 4e-21
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 10  QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
           ++ D K+ K+I ++G G  P   +   +HY  + + ++   + T+  +  P    LG   
Sbjct: 45  EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103

Query: 70  -LIPAFEYAILSMQKGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINF 121
             +      + SM+ GE++     +EL +G  G    P +P  ADLL+EV +I F
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 16/129 (12%)

Query: 12  QDGKLMKKIKEKGFGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
            +G L KK    G   +  PV G  V VH     E      + T +++     F LG   
Sbjct: 15  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCD 68

Query: 70  LIPAFEYAILSMQKGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLINFSIDPQVV 128
           +I A + ++  M  GE +   A  + C+G  G   P IP  A L  EV L      P   
Sbjct: 69  VIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRP--- 125

Query: 129 RSSADIESD 137
               D+E  
Sbjct: 126 ----DLEMS 130

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 7   GKEQIQDGKLMKKIKEKGFGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
             + + +G L KK    G   +  PV G  V VH     E      + T +++     F 
Sbjct: 36  WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFT 89

Query: 65  LGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLINF 121
           LG   +I A + ++  M  GE +   A  + C+G  G   P IP  A L  EV L   
Sbjct: 90  LGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 8   KEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG 66
           + +I    L KK+ ++G G + P +G  V+VHY      +    D +  R     +F+LG
Sbjct: 5   ENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLL-DGKKFDSSRDRDD-TFKFKLG 62

Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQ 126
              +I  ++  I +M+KGE + F    EL +G  G PP IPA A L F+V L++++    
Sbjct: 63  QGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRD 122

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 77.6 bits (191), Expect = 4e-16
 Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 11/148 (7%)

Query: 5   PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
                    G   K +KE    ENP     V V Y    E      D T + KS    F 
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLE------DGTVVSKSEGVEFT 172

Query: 65  LGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR-----IPAKADLLFEVHLI 119
           +    L PA   A+ +M+KGEK       +  FG +G P       +P  A L+ ++ L+
Sbjct: 173 VKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELV 232

Query: 120 NFSIDPQVVRSSADIESDFIDSQVEEPA 147
           ++    ++      ++    + +  E  
Sbjct: 233 SWKTVTEIGDDKKILKKVLKEXEGYERP 260

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 1   MVPVPYGKEQIQDGKLMKKIKEK-GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI 59
           +V      E   D K++KK+ ++    E P  GA V V      +   + +   +  +  
Sbjct: 231 LVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQE- 289

Query: 60  PERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVH 117
           P  F+     +I   + A+L+M+KGE +      E  +G+        +P  + +++EV 
Sbjct: 290 PFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVE 349

Query: 118 LINF 121
           L++F
Sbjct: 350 LVSF 353

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 78.5 bits (194), Expect = 6e-18
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 7   GKEQIQDGKLMKKIKEKGFGEN---PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERF 63
             E   DG ++K I +KG       P  G  V VHY+   E+     D ++ R   P +F
Sbjct: 9   KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV-PFKF 67

Query: 64  QLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
            L    +I  ++  + SM+K EK          +G  GC   IP  + LLFE+ L++F
Sbjct: 68  HLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 12  QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +DG ++K IK++G G   P  G  V+VHY+   E N    D +  R      F LG   +
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLE-NGTKFDSSRDRGD-QFSFNLGRGNV 69

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           I  ++  + +M KGE ++F    +  +G  G PP+IP  A L+FEV L  +S
Sbjct: 70  IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 121

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 79.1 bits (195), Expect = 5e-17
 Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           QD  ++K IK +G G E P++G  V VHY  +   +    D +  RK     F LG   +
Sbjct: 49  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLL-DGTKFDSSLDRKD-KFSFDLGKGEV 106

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRS 130
           I A++ AI +M+ GE        E  +G+ G PP+IP  A L+FEV L  F  +      
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166

Query: 131 SADIESDFI 139
              I     
Sbjct: 167 DGGIIRRIQ 175

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 5   PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
               E+   G + +          P  GA V+V    Y +                 RF+
Sbjct: 160 EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD--------QRELRFE 211

Query: 65  LG---SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLIN 120
           +G   +  L    E AI  M+KGE S  +      FG++G    +IP  A+L +E+HL +
Sbjct: 212 IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKS 271

Query: 121 F 121
           F
Sbjct: 272 F 272

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 77.1 bits (190), Expect = 7e-17
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 8/167 (4%)

Query: 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQM-QLEEYLCRVYR 208
           + ++ A ++   G   F    I  A+ +Y++A+   I+T+  + +  + + +        
Sbjct: 33  EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92

Query: 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268
           NL  CYN NK Y    D ASK L+        +VK  +  G A +       A ++L  A
Sbjct: 93  NLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKA 148

Query: 269 RKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQ 315
             L   +    +I           ++ +K+ K     MF       +
Sbjct: 149 ASLNPNN---LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEE 192

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 12  QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G GE  P++G  V VHY      N    D ++ R   P  F LG   +
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQV 74

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 75  IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 9/180 (5%)

Query: 131 SADIESDFI-DSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL-INT 188
           S D   DF  D+ V+     K+L  +++L   G   F  +N   A+++Y   ++ +  + 
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257

Query: 189 QVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW 248
                 D  +L+        N+  C      ++   D   +AL+        + K  +  
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYRR 313

Query: 249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308
            +   GL+E+  A+  LK A+++A +D     I  E+LK     +  + + KA   KMF+
Sbjct: 314 AQGWQGLKEYDQALADLKKAQEIAPED---KAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 73.0 bits (180), Expect = 3e-16
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 10  QIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS 68
           ++ +G +       G G   P  G  V +HY    E N    D +  R S P +  +G  
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLE-NGQKFDSSVDRGS-PFQCNIGVG 59

Query: 69  GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
            +I  ++  I  +  GEK+         +G  G P  IP  + L+F+V L+  +
Sbjct: 60  QVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 71.8 bits (177), Expect = 6e-16
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 24  GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK 83
           G       G  + +HY    E +    D +  +   P  F LG+  +I  ++  +L M +
Sbjct: 1   GSPIKSRKGDVLHMHYTGKLE-DGTEFDSSLPQNQ-PFVFSLGTGQVIKGWDQGLLGMCE 58

Query: 84  GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
           GEK       EL +G  G PP+IP  A L+FEV L+      ++
Sbjct: 59  GEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 71.4 bits (176), Expect = 8e-16
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 16  LMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 74
           +  +    G G   P  G    VHY    E +    D +  R   P +F LG   +I  +
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNK-PFKFMLGKQEVIRGW 59

Query: 75  EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           E  +  M  G+++    S +  +GA G P  IP  A L+F+V L+  
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 13  DGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
           D  ++K +K  G GE  P++G  V VHY      N    D ++ R   P  F LG   +I
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQVI 91

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
            A++  + +M+KGE        E  +G+ G  P+IP+ A L FE+ L++F
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 13  DGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAE------ANELPIDITYLRKSIPERFQL 65
             K  K I +KG     P  G  V   Y            N             P  F++
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAK-PLSFKV 61

Query: 66  GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLFEVHLINF 121
           G   +I  ++ A+L+M KGEK+      E  +G  G P  +IP    L+FEV L++ 
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 9/159 (5%)

Query: 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL---INTQVTNYEDQMQLEEYLCRVYR 208
           LK  + L   G   F  K+   A+  YRDA+  L   I  +     + ++L+     +Y 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268
           N+  CY N        + +S+ L+        + K  F   KA I   +   A + LK  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREE----TNEKALFRRAKARIAAWKLDEAEEDLKLL 123

Query: 269 RKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
            +        + + +E+        + + +++    KMF
Sbjct: 124 LRNHPAA--ASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 13  DGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
             +L KK+   G G   P  G  V VHY      +    D +  R   P +F LG+  +I
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFP-DGKQFDSSRSRGK-PFQFTLGAGEVI 80

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
             ++  + +M  GEK+ F   Y+L +G  G PP IP KA L+FEV L+ 
Sbjct: 81  KGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
           +  L  +   +G G     G  V VHY  +   +    D +  R   P  F LG   +I 
Sbjct: 103 ESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRND-PFAFVLGGGMVIK 160

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
            ++  +  M+ G         +L +GA G    IP  A L+FEV L++
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 16  LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLI 71
           L  +   +G G     G  V VHY        L      D +  R   P  F LG   +I
Sbjct: 30  LKYEDLTEGSGAEARAGQTVSVHY-----TGWLTDGQKFDSSKDRND-PFAFVLGGGMVI 83

Query: 72  PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
             ++  +  M+ G         +L +GA G    IP  A L+FEV L++
Sbjct: 84  KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 13  DGKLMKKIKEKGF--GENPVLGAHVQVHYMYYAEANELPIDITYLRKSI-PERFQLGSSG 69
           + ++  ++ +K F        G  + VHY  Y E +      T+   +  P  F LG   
Sbjct: 11  EPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILE 70

Query: 70  LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDP 125
            +  ++  +  M  GEK        L +G  G    IP ++ L+F + L+     P
Sbjct: 71  ALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLEIRNGP 125

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 19  KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 74
           K+   G G  P     V V Y        L      D T      P  FQ+    +IP +
Sbjct: 111 KVINSGNGVKPGKSDTVTVEY-----TGRLIDGTVFDSTEKTGK-PATFQVS--QVIPGW 162

Query: 75  EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
             A+  M  G   + +    L +G       I     L+F++HLI
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLI 207

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 16  LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 75
           L    K  G+G   V G  ++ HY+   E  ++  D +Y R   P  F++G   +I  ++
Sbjct: 14  LAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKV-FDSSYNRGK-PLTFRIGVGEVIKGWD 71

Query: 76  YAIL------SMQKGEKSDFFASYELCFGALG-----CPPRIPAKADLLFEVHLINFS 122
             IL       M  G K       EL +G  G         IP  + LLF++  I  +
Sbjct: 72  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGKA 129

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 13/110 (11%)

Query: 16  LMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGL 70
           L+ +   +G G+  P +    +VHY        L      D +  R   P  F+     +
Sbjct: 39  LVFQRIARGSGKRAPAIDDKCEVHY-----TGRLRDGTVFDSSRERGK-PTTFRPN--EV 90

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
           I  +  A+  M++G++   F  Y+L +G  G    IP  + L F+V LI+
Sbjct: 91  IKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 19  KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 74
           ++ E G GE P     V V+Y        L      D +Y R   P  F+L   G+IP +
Sbjct: 126 QVVEAGKGEAPKDSDTVVVNY-----KGTLIDGKEFDNSYTRGE-PLSFRLD--GVIPGW 177

Query: 75  EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
              + +++KG K       EL +G  G P  IP  + L+F+V L+
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELL 221

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 19  KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI-PERFQLGSSGLIPAFEYA 77
                G G  P     V+V Y        L  D     +S  P+ F+L    +I  +  A
Sbjct: 122 TELTPGTGPKPDANGRVEVRY-----VGRL-PDGKIFDQSTQPQWFRLD--SVISGWTSA 173

Query: 78  ILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
           + +M  G K       +  +GA G    I     L+FE+ LI
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELI 215

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 37/218 (16%), Positives = 67/218 (30%), Gaps = 22/218 (10%)

Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
             AQEL   G   F  +    A   Y  A+    N  V  Y             Y N  +
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVY-------------YTNRAL 46

Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
           CY   +Q +       +AL+         VK  F  G+  + ++ +  AI +L+ A  LA
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

Query: 273 AKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRP 332
            +  +    D          +++    + R  +    S   S  + ++    +   +   
Sbjct: 103 KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQE---SELHSYLTRLIAAERERELEECQ 159

Query: 333 ATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEFRMAE 370
              +  +D               +K M      F   +
Sbjct: 160 RNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 23/152 (15%)

Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
             AQEL   G   F  +        Y +A           Y   +     +   Y N  +
Sbjct: 7   PSAQELKEQGNRLFVGRK-------YPEAAAC--------YGRAITRNPLVAVYYTNRAL 51

Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
           CY   +Q +       +AL+         VK  F  G+  + ++ +  AI +L+ A  LA
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 273 --AKDSVRAEIDKEILKADLGNQQYQKETKAR 302
              + +   +I   +  A    +++    + R
Sbjct: 108 KEQRLNFGDDIPSALRIAK--KKRWNSIEERR 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 68/493 (13%), Positives = 127/493 (25%), Gaps = 183/493 (37%)

Query: 3   PVPYGKEQIQDGKLMKKIKE----------------KGFGENPVLGAHV----------- 35
              + K  +   +   K+++                 G G+   +   V           
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMD 181

Query: 36  -QVHYM---YYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
            ++ ++          +   +  L   I   +   S       +  I S+ + E      
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSI-QAELRRLLK 239

Query: 92  S--YELC---------------FGALGCP----PRIPAKADLLFEVHLINFSIDPQVVRS 130
           S  YE C               F  L C      R     D L      + S+D      
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLD------ 292

Query: 131 SADIESDFIDSQVEEPAFAKVLK-RAQEL---------------GASGKNAFN------- 167
                      +V+     K L  R Q+L                 S ++          
Sbjct: 293 --HHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 168 ---DK--NIVSA---------VRRY-------RDAVKLLINTQV-------TNYEDQMQL 199
              DK   I+ +          R+          +    I T +           D M +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVV 407

Query: 200 --------------EEYLCRVY-----------------RNLMVCYNNNKQYKLTCDCAS 228
                         +E    +                  R+++  YN  K +    D   
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIP 466

Query: 229 KALQ--FASHFA--------TKDVKLF------FVWGKALIGLQEWTSAIKHLKTARKLA 272
             L   F SH           + + LF      F +      L+     I+H  TA    
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LE---QKIRHDSTA--WN 515

Query: 273 AKDSVRAEI-DKEILKADLGNQQYQKETKARCMKMFSSSSSP----SQHSNVVRIAYQ-E 326
           A  S+   +   +  K  + +   + E     +  F          S++++++RIA   E
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Query: 327 HEQVRPATLQEIQ 339
            E +     +++Q
Sbjct: 576 DEAIFEEAHKQVQ 588

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 11/96 (11%)

Query: 32  GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
              V + Y    E   L +D + +    P  +  G   LI   E A+   + G+K D   
Sbjct: 6   DLVVSLAYQVRTEDGVL-VDESPVSA--PLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 92  SYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
                +G            +L+  V    F    ++
Sbjct: 63  GANDAYG-----QYDE---NLVQRVPKDVFMGVDEL 90

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 11/96 (11%)

Query: 32  GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
              V + Y    E   L +D + +    P  +  G   LI   E A+   + G+K D   
Sbjct: 6   DLVVSLAYQVRTEDGVL-VDESPVSA--PLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 92  SYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
                +G            +L+  V    F    ++
Sbjct: 63  GANDAYG-----QYDE---NLVQRVPKDVFMGVDEL 90

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 35 VQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYE 94
            + Y    + + + +D    ++  P  F +G++ +I   E A+L  Q GE  +   + E
Sbjct: 13 ALIEYEVREQGSSIVLDSNISKE--PLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70

Query: 95 LCFG 98
            +G
Sbjct: 71 EAYG 74

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
          +   + + ++           + V VH+    +      + T      P  F+LG + L 
Sbjct: 17 RGSHMSESVQS---------NSAVLVHFTLKLDDGTT-AESTRNNGK-PALFRLGDASLS 65

Query: 72 PAFEYAILSMQKGEKSDFFASYELCFG 98
             E  +L ++ G+K+ F    +  FG
Sbjct: 66 EGLEQHLLGLKVGDKTTFSLEPDAAFG 92

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRN 209
           K +K+  +L  S +    D     A  +Y   +K            +  + EY  R    
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSIAEYTVRSKER 300

Query: 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269
           +  C++ +++        S+ LQ                 +A +  + +  AI+  +TA+
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNV----NALKDRAEAYLIEEMYDEAIQDYETAQ 356

Query: 270 KLAAKDSVRAEIDKEILKADLGNQQYQKE 298
           +    D    +I + + KA    +Q QK 
Sbjct: 357 EHNEND---QQIREGLEKAQRLLKQSQKR 382

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 32 GAHVQVHYMYYAEANELPIDITY------------LRKSIPERFQLGSSGLIPAFEYAIL 79
          G  ++V Y+   E+ ++  D +              R+  P  F +G   LI  FE A+L
Sbjct: 5  GVKIKVDYIGKLESGDV-FDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 80 SMQKGEKSDFFASYELCFG 98
           M+ G++       E  +G
Sbjct: 64 DMEVGDEKTVKIPAEKAYG 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.93
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.92
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.92
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.91
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.89
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.89
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.89
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.89
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.89
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.89
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.88
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.88
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.87
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.87
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.87
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.87
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.86
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.86
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.86
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.85
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.83
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.8
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.79
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.75
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.62
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.59
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.57
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.54
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.51
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.47
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.46
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.44
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.44
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.43
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.43
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.42
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.41
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.4
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.38
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.37
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.37
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.36
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.32
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.32
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.3
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.27
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.26
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.22
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.21
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.2
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.2
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.2
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.2
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.2
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.2
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.17
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.15
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.14
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.03
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.03
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.02
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.02
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.99
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.99
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.95
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.94
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.94
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.93
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.92
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.91
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.91
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.9
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.9
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.89
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.88
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.87
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.86
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.79
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.77
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.76
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.74
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.74
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.67
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.57
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.54
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.54
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.48
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.44
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.44
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.37
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.35
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.31
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.29
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	98.22
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.17
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.13
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.06
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.97
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.96
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.95
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.81
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.74
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.73
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.68
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.61
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.53
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.47
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.37
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.22
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.86
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.55
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.53
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.03
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	95.65
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	95.56
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.17
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.13
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.95
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.43
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.72
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.57
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.21
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.19
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.85
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.87
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.42
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	87.85
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.61
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	87.48
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	86.81
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	86.29
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.28
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.13
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	83.42
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.46
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	82.37
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.6

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=9.4e-42  Score=336.73  Aligned_cols=298  Identities=23%  Similarity=0.383  Sum_probs=225.6

Q ss_pred             Ccccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCC
Q psy8368           7 GKEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK   83 (372)
Q Consensus         7 ~~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~   83 (372)
                      |.||+  +++|+.|+|+++|+|.. |..||.|+|||++++.+ |++||||+.++. |++|.+|.+.+++||+.+|.+|++
T Consensus        22 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~-g~~~dss~~~~~-p~~~~~g~~~~i~g~~~~l~~m~~   99 (457)
T 1kt0_A           22 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN-GKKFDSSHDRNE-PFVFSLGKGQVIKAWDIGVATMKR   99 (457)
T ss_dssp             -----------CEEEC--------CCCBTCEEEEEEEEEC------CBC-------CEEEETTSTTSCHHHHHHHTTCCT
T ss_pred             cccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECC-CCEEeccCCCCC-CeEEEeCCcchhhHHHHHHhhCCC
Confidence            78999  99999999999999998 99999999999999865 469999987777 999999999999999999999999


Q ss_pred             CcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeeecCcccc-----------------------------------
Q psy8368          84 GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVV-----------------------------------  128 (372)
Q Consensus        84 Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~~~~~~~-----------------------------------  128 (372)
                      ||++.|.|||.++||..|.|+.||++++++|+|+|+++. .....                                   
T Consensus       100 Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~-~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~~g  178 (457)
T 1kt0_A          100 GEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK-GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGG  178 (457)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE-CEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEETT
T ss_pred             CCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceee-cccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEeCC
Confidence            999999999999999999988999999999999999887 32000                                   


Q ss_pred             ccccccccccccC-----------------------------cc-----------------------------C-----c
Q psy8368         129 RSSADIESDFIDS-----------------------------QV-----------------------------E-----E  145 (372)
Q Consensus       129 ~~~~~~~~~~~~~-----------------------------~~-----------------------------e-----~  145 (372)
                      ..|...+..|.+.                             +.                             +     .
T Consensus       179 ~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~  258 (457)
T 1kt0_A          179 RMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWE  258 (457)
T ss_dssp             EEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGG
T ss_pred             eEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhh
Confidence            0000000000000                             00                             0     1


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy8368         146 PAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD  225 (372)
Q Consensus       146 ~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~  225 (372)
                      ...+.....+..++..|+.+++.|+|.+|+..|.+|+.+.+.....+++...+...+...+|+|+|.||+++++|++|+.
T Consensus       259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  338 (457)
T 1kt0_A          259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE  338 (457)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            22345567889999999999999999999999999999988876666677778888889999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368         226 CASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       226 ~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      +|+++|+    ++|+++++||++|.+|..+|+|++|+.+|++|++++|++.   .++..+..+...++++.++++..|++
T Consensus       339 ~~~~al~----~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~  411 (457)
T 1kt0_A          339 CCDKALG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK---AARLQISMCQKKAKEHNERDRRIYAN  411 (457)
T ss_dssp             HHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998    9999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             hccCCCCCC
Q psy8368         306 MFSSSSSPS  314 (372)
Q Consensus       306 ~~~~~~~~~  314 (372)
                      ||.+....+
T Consensus       412 ~f~k~~~~d  420 (457)
T 1kt0_A          412 MFKKFAEQD  420 (457)
T ss_dssp             C--------
T ss_pred             HHhhhhhcc
Confidence            998877653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=4.9e-42  Score=325.82  Aligned_cols=281  Identities=21%  Similarity=0.304  Sum_probs=209.5

Q ss_pred             CCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCC-ccchHHHHHhccCCCCcEEEEE
Q psy8368          12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS-GLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~-~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      .++++.|+|+++|+|..|..||.|+|||++++.++|++||+++.++. |++|.+|.+ .+++||+.+|.+|++||++.|.
T Consensus        47 ~~~~~~~~~~~~g~g~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~-~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~  125 (338)
T 2if4_A           47 LDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (338)
T ss_dssp             EETTEEEEEEECCBSCCCCTTCEEEEEEEEEETTTCCCCEEHHHHTC-CEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE
T ss_pred             CCCCeEEEEEeCCCCCCCCCCCEEEEEEEEEEcCCCcEeecccCCCC-CeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE
Confidence            56789999999999999999999999999999875679999987777 999999999 8999999999999999999999


Q ss_pred             ecCCCccCCCCC--CCCCCCCCcEEEEEEEEeeecCccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhc
Q psy8368          91 ASYELCFGALGC--PPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFND  168 (372)
Q Consensus        91 i~~~~~yg~~g~--~~~ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~  168 (372)
                      ||+.++||..|.  ++.||++++++|.|++..+. ....      ....|.+      ++++.++.+..++..|+.+++.
T Consensus       126 i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~-~~~e------~~~~~~~------~~~~~~~~a~~~~~~g~~~~~~  192 (338)
T 2if4_A          126 VGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD-ETKE------GKARSDM------TVEERIGAADRRKMDGNSLFKE  192 (338)
T ss_dssp             ECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEE-CCCC------CBTTTBC------CHHHHHHHHHHHHHHHHHTCSS
T ss_pred             ECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEec-CCcc------ccccccC------CHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999887  35799999999999999988 3211      1223444      3455688999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhcc--CCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy8368         169 KNIVSAVRRYRDAVKLLINTQ--VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFF  246 (372)
Q Consensus       169 g~~~~A~~~y~~al~~~~~~~--~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~  246 (372)
                      |+|.+|+..|.+|+.+.+...  ............+...+++|+|.||+++++|++|+.+|+++|+    ++|++.++|+
T Consensus       193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~  268 (338)
T 2if4_A          193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKNPKALF  268 (338)
T ss_dssp             SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence            999999999999999876532  1112223344455567999999999999999999999999998    8999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368         247 VWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       247 r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      ++|.+|..+|+|++|+.+|+++++++|++.   .++..|..+..........++..|+++|......
T Consensus       269 ~lg~a~~~~g~~~~A~~~l~~al~l~p~~~---~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          269 RRGKAKAELGQMDSARDDFRKAQKYAPDDK---AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999999999999   9999999998888888888999999999877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=6.7e-38  Score=297.05  Aligned_cols=277  Identities=21%  Similarity=0.322  Sum_probs=244.3

Q ss_pred             CCCccccCCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCc---cchHHHHHhcc
Q psy8368           5 PYGKEQIQDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG---LIPAFEYAILS   80 (372)
Q Consensus         5 ~~~~di~~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~---~~~~le~~l~~   80 (372)
                      +.+.++++|++|+|+|+++|+|.. |..|+.|+|||++++ + |.+||++      |++|.+|.|.   ++++|+.||.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~-g~~fd~~------~~~f~lG~g~~~~~~~~~e~al~~   87 (336)
T 1p5q_A           16 PRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K-DKLFDQR------ELRFEIGEGENLDLPYGLERAIQR   87 (336)
T ss_dssp             ------CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-T-TEEEEEE------EEEEETTCGGGGTCCHHHHHHHTT
T ss_pred             ccceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-C-CEEEecC------CeEEEeCCCCccccchHHHHHHhc
Confidence            346788899999999999999984 999999999999998 5 4699997      8999999886   58999999999


Q ss_pred             CCCCcEEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEeeecCccccccccccccccccCccCchhHHHHHHHHHHHH
Q psy8368          81 MQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELG  159 (372)
Q Consensus        81 m~~Ge~~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k  159 (372)
                      |+.||++.+.|+|.++||..|.+. .||+++++.|.+.+.++. .     +..    .|.+      ..+.....+..++
T Consensus        88 ~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~-~-----A~~----~~~~------a~~~~p~~a~~~~  151 (336)
T 1p5q_A           88 MEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE-K-----AKE----SWEM------NSEEKLEQSTIVK  151 (336)
T ss_dssp             CCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEE-C-----CCC----GGGC------CHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecc-c-----ccc----hhcC------CHHHHHHHHHHHH
Confidence            999999999999999999999876 699999999999999988 2     111    2322      2233457789999


Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT  239 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p  239 (372)
                      ..|+.+++.|+|.+|+..|.+|+.+.+.......+.......+...+++|+|.||+++|+|++|+.+|+++|+    ++|
T Consensus       152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p  227 (336)
T 1p5q_A          152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDS  227 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence            9999999999999999999999999887765556667778888899999999999999999999999999998    999


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +++++++++|.+|..+|++++|+.+|++|++++|++.   .++..++.+...++++.++++..|++||.+...
T Consensus       228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK---AAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999   999999999999999999999999999975443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.93  E-value=3.7e-24  Score=210.89  Aligned_cols=220  Identities=17%  Similarity=0.202  Sum_probs=181.8

Q ss_pred             ccccCCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCc---cchHHHHHhccCCC
Q psy8368           8 KEQIQDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG---LIPAFEYAILSMQK   83 (372)
Q Consensus         8 ~di~~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~---~~~~le~~l~~m~~   83 (372)
                      .+++.|+++.++|+++|.|.. |..|+.|++||++++ +| .+|+++      +++|.+|+|.   ++++|+.||..|+.
T Consensus       140 ~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g-~~f~~~------~~~f~~g~g~~~~v~~~~e~al~~~~~  211 (457)
T 1kt0_A          140 EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GG-RMFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQR  211 (457)
T ss_dssp             EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TT-EEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCB
T ss_pred             ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CC-eEEecC------ceEEEeCCCccccCChHHHHHHHhCCC
Confidence            467789999999999999976 999999999999998 44 699984      7999999774   89999999999999


Q ss_pred             CcEEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEeeecCccccccccccccccccCccCc-----------------
Q psy8368          84 GEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEE-----------------  145 (372)
Q Consensus        84 Ge~~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~-----------------  145 (372)
                      ||++.+.++|.++|+..|.+. .||+++.+.|.+.+..+. ..     ..    .|.+.....                 
T Consensus       212 ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~-~A-----~~----~~~~~~~~~~~~a~~~~~~G~~~~~~  281 (457)
T 1kt0_A          212 EEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE-KA-----KE----SWEMDTKEKLEQAAIVKEKGTVYFKG  281 (457)
T ss_dssp             TCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEE-CC-----CC----GGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcc-cC-----cc----hhhcCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999998765 699999999999999887 21     11    222221110                 


Q ss_pred             -------hhHHHHHH-------------------HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHH
Q psy8368         146 -------PAFAKVLK-------------------RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQL  199 (372)
Q Consensus       146 -------~~~~~~~~-------------------~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~  199 (372)
                             ..+...++                   .+..+.+.|..+++.|+|.+|+..|.+||.+.+..           
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-----------  350 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-----------  350 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-----------
Confidence                   11111111                   15677899999999999999999999999997665           


Q ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q psy8368         200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKH  264 (372)
Q Consensus       200 ~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~  264 (372)
                          ..+++++|.||+.+++|++|+.+++++++    ++|++..++..++.++..++++++|...
T Consensus       351 ----~~a~~~~g~a~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          351 ----EKGLYRRGEAQLLMNEFESAKGDFEKVLE----VNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                68899999999999999999999999998    9999999999999999999999988754

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.92  E-value=1.6e-24  Score=179.35  Aligned_cols=114  Identities=32%  Similarity=0.605  Sum_probs=108.0

Q ss_pred             Ccccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCC
Q psy8368           7 GKEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK   83 (372)
Q Consensus         7 ~~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~   83 (372)
                      ++||+  +|++++|+|+++|+|.. |..||.|+|||++++.+| ++||+++.++. |++|.+|.+.+++||+.+|.+|++
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~g~~i~G~e~~l~gm~~  103 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG-KKFDSSHDRNE-PFVFSLGKGQVIKAWDIGVATMKK  103 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTS-CEEEESGGGTS-CEEEETTSSSSCHHHHHHHTTCCB
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCC-CEEEeecccCC-CeEEEeCCCcccHHHHHHHhCCCC
Confidence            78998  89999999999999984 999999999999998765 59999988777 999999999999999999999999


Q ss_pred             CcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          84 GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        84 Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      ||++.|.|||.++||..|.++.||++++++|+|+|++++
T Consensus       104 Ge~~~v~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          104 GEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999999999999999988999999999999999987

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.92  E-value=9.6e-25  Score=178.61  Aligned_cols=117  Identities=32%  Similarity=0.583  Sum_probs=102.6

Q ss_pred             CCCccccCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCC
Q psy8368           5 PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKG   84 (372)
Q Consensus         5 ~~~~di~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~G   84 (372)
                      +.+.||+.+++++++++++|+|..+..||.|+|||++++.+++++||+++.+.. |++|.+|.+.+++||+++|.+|++|
T Consensus        17 ~~~~~v~~~~gl~~~vl~~G~g~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~-p~~f~lG~g~~i~G~e~aL~gm~~G   95 (134)
T 3b7x_A           17 QRMLDISGDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITLWGMELGLLSMRRG   95 (134)
T ss_dssp             TTCEESSSSSSEEEEEEECCEEEECCTTCEEEEEEEEECTTCSSCSEEC--------CEEC-CCCCCHHHHHHHHTCEET
T ss_pred             cccceeeCCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCeEEEecCCCCC-CEEEEcCCcchhHHHHHHHhCCCCC
Confidence            357899999999999999999998999999999999998754569999987667 9999999999999999999999999


Q ss_pred             cEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          85 EKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        85 e~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |++.|.|||+++||..+.++.||+|++++|+|+|+++.
T Consensus        96 e~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           96 ELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             CEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            99999999999999999888899999999999999886

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=4.8e-24  Score=173.17  Aligned_cols=114  Identities=32%  Similarity=0.605  Sum_probs=107.5

Q ss_pred             Ccccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCC
Q psy8368           7 GKEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK   83 (372)
Q Consensus         7 ~~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~   83 (372)
                      ++||+  +|++++|+++++|+|.. |..||.|+|||++++.+| ++||+++.++. |++|.+|.+.+++||+.+|.+|++
T Consensus        10 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~g~~i~G~e~~l~gm~~   87 (128)
T 3o5q_A           10 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG-KKFDSSHDRNE-PFVFSLGKGQVIKAWDIGVATMKK   87 (128)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTS-CEEEEHHHHTS-CEEEETTSSSSCHHHHHHHTTCCT
T ss_pred             cceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCC-CEEEecCCCCC-CEEEEECCCCccHHHHHHHhcCCC
Confidence            78887  99999999999999985 999999999999999765 59999987677 999999999999999999999999


Q ss_pred             CcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          84 GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        84 Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |+++.|.|||.++||..+.++.||++++++|+|+|++++
T Consensus        88 Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           88 GEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            999999999999999999988999999999999999987

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=1.5e-23  Score=171.69  Aligned_cols=115  Identities=33%  Similarity=0.581  Sum_probs=107.2

Q ss_pred             CCcccc--CCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCC
Q psy8368           6 YGKEQI--QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ   82 (372)
Q Consensus         6 ~~~di~--~d~~i~k~il~~G~g~-~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~   82 (372)
                      .|+||+  .+++++|+++++|+|. .|..||.|+|||++++.+| ++||+++.++. |++|.+|.+.+++||+.+|.+|+
T Consensus         4 ~~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~~~vi~G~e~~l~gm~   81 (135)
T 1r9h_A            4 EKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG-TKFDSSRDRGD-QFSFNLGRGNVIKGWDLGVATMT   81 (135)
T ss_dssp             -CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS-CEEEEHHHHTS-CEEEETTTTSSCHHHHHHHTTCC
T ss_pred             cceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCC-CEEEecCcCCC-CEEEEeCCCCccHHHHHHHhcCC
Confidence            378999  9999999999999997 4999999999999998765 59999976566 99999999999999999999999


Q ss_pred             CCcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +||++.|.|||+++||..+.++.||++++++|+|+|.++.
T Consensus        82 ~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~  121 (135)
T 1r9h_A           82 KGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  121 (135)
T ss_dssp             BTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHcCCCCCCCCCcCcCCcEEEEEEEEEee
Confidence            9999999999999999999888999999999999999998

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.91  E-value=1.8e-23  Score=170.10  Aligned_cols=118  Identities=31%  Similarity=0.448  Sum_probs=106.1

Q ss_pred             CCCCccccCCCcEEEEEEecC---CCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhcc
Q psy8368           4 VPYGKEQIQDGKLMKKIKEKG---FGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS   80 (372)
Q Consensus         4 ~~~~~di~~d~~i~k~il~~G---~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~   80 (372)
                      .+.+.+++.+|.++++|+++|   +|..|..||.|+|||++++..++++||+++.+.. |++|.+|.+.+++||+.+|.+
T Consensus         6 ~~~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~-p~~f~lG~g~~i~g~e~~l~g   84 (129)
T 2vn1_A            6 EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV-PFKFHLEQGEVIKGWDICVSS   84 (129)
T ss_dssp             -CEEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTC-CEEEETTSSSSCHHHHHHHTT
T ss_pred             ccCCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCc-cEEEEeCCCCcCHHHHHHHhC
Confidence            345678889999999999976   4566999999999999998333569999987667 999999999999999999999


Q ss_pred             CCCCcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          81 MQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        81 m~~Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |++||++.|.|||+++||..+.++.||+|++++|+|+|+++.
T Consensus        85 m~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~  126 (129)
T 2vn1_A           85 MRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFR  126 (129)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEe
Confidence            999999999999999999999888899999999999999987

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=4.1e-23  Score=177.00  Aligned_cols=126  Identities=25%  Similarity=0.433  Sum_probs=103.7

Q ss_pred             CCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCC-ccchHHHHHhccCCCCcEEEEE
Q psy8368          12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS-GLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~-~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      .+++++++|+++|+|..|..||.|+|||++++.++|++|++++.++. |+.|.+|.+ .+++||+.+|.+|++|+++.|.
T Consensus        47 ~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~-p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~  125 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (180)
T ss_dssp             EETTEEEEEEECCBSCCBCTTCEEEEEEEEEETTTCCEEEETTTTTC-CEEEETTSCCGGGHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCceEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCccCC-CEEEEeCCCCchhHHHHHHHhCCCCCCEEEEE
Confidence            55689999999999998999999999999999865679999987777 999999999 9999999999999999999999


Q ss_pred             ecCCCccCCCCC--CCCCCCCCcEEEEEEEEeeecCccccccccccccccccCccCc
Q psy8368          91 ASYELCFGALGC--PPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEE  145 (372)
Q Consensus        91 i~~~~~yg~~g~--~~~ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~  145 (372)
                      ||++++||..+.  ++.||+|++++|+|+|+++. ....      -+..|.|+.+|+
T Consensus       126 iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~-~~~e------~~~~~~mt~eEr  175 (180)
T 2f4e_A          126 VGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD-ETKE------GKARSDMTVEER  175 (180)
T ss_dssp             ECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEES-CBCC------C-----------
T ss_pred             ECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEe-cCcc------ccccccCCHHHH
Confidence            999999999886  45799999999999999998 3221      233688887765

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.89  E-value=8.6e-23  Score=163.44  Aligned_cols=112  Identities=29%  Similarity=0.365  Sum_probs=104.0

Q ss_pred             CCCccccCCCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCC
Q psy8368           5 PYGKEQIQDGKLMKKIKEKGFGE--NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ   82 (372)
Q Consensus         5 ~~~~di~~d~~i~k~il~~G~g~--~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~   82 (372)
                      ..|.+++.+|+++++++++|+|.  .|..||.|++||++++.+| ++|+++    . |++|.+|.+.+++||+.+|.+|+
T Consensus         4 ~~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG-~~~ds~----~-p~~f~lG~~~~i~g~e~~l~gm~   77 (118)
T 2awg_A            4 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENG-TRVQEE----P-ELVFTLGDCDVIQALDLSVPLMD   77 (118)
T ss_dssp             TCEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTS-CEEEEE----E-EEEEETTSSCSCHHHHHHGGGSC
T ss_pred             ccceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCC-CEEECC----C-CEEEEECCCChhHHHHHHHhCCC
Confidence            46899999999999999999997  5999999999999998664 589984    4 99999999999999999999999


Q ss_pred             CCcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +|+++.|.||++++||..+.++.||++++++|+|+|++++
T Consensus        78 ~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           78 VGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             TTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999999999888899999999999999886

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.89  E-value=1.5e-22  Score=160.76  Aligned_cols=108  Identities=26%  Similarity=0.435  Sum_probs=100.1

Q ss_pred             CCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEe
Q psy8368          13 DGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA   91 (372)
Q Consensus        13 d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i   91 (372)
                      ++|++++++++|+|.. |..||.|++||++++.+| ++||+++.++. |++|.+|.+.+++||+++|.+|++||++.|.|
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG-~~~d~s~~~~~-p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENG-QKFDSSVDRGS-PFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTS-CEEEESTTTTC-CEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCC-CEEEecCCCCC-cEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            3579999999999998 999999999999998664 59999987667 99999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          92 SYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        92 ~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      ||+++||..+.++.||+|++++|+|+|++++
T Consensus        83 p~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            9999999999888899999999999999764

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.89  E-value=1.3e-22  Score=159.68  Aligned_cols=106  Identities=28%  Similarity=0.469  Sum_probs=98.7

Q ss_pred             cEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecC
Q psy8368          15 KLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASY   93 (372)
Q Consensus        15 ~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~   93 (372)
                      |++++++++|+|.. |..||.|++||++++.+| ++||+++.++. |++|.+|.+.+++||+++|.+|++||++.|.|||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG-~~~d~s~~~~~-p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG-KKFDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTS-CEEEEHHHHTS-CEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCC-CEEEecCCCCC-CEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECH
Confidence            68899999999988 999999999999998764 59999986556 9999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          94 ELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        94 ~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +++||..+.++.||++++++|+|+|++++
T Consensus        79 ~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           79 DYAYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHccCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            99999999888899999999999999763

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.89  E-value=2.9e-22  Score=163.37  Aligned_cols=109  Identities=27%  Similarity=0.396  Sum_probs=101.3

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      +.+.++.++++++|+|..|..||.|+|+|++++.+| ++||+++.++. |++|.+|.+.+++||+++|.+|++||++.|.
T Consensus        25 ~~~~gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           25 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG-QKFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             ECTTSCEEEEEECCSSCBCCTTSEEEEEEEEEETTS-CEEEETTTTTC-CEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             ECCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCC-CEEeccCcCCC-CEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            467889999999999988999999999999998664 59999987667 9999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~  121 (372)
                      ||++++||..+.++.||||++++|+|+|++|
T Consensus       103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            9999999999988789999999999999865

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.89  E-value=2.6e-22  Score=161.00  Aligned_cols=107  Identities=31%  Similarity=0.479  Sum_probs=98.3

Q ss_pred             CCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccC-------CCcCeEEEcCCCccchHHHHHhccCCCC
Q psy8368          13 DGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLR-------KSIPERFQLGSSGLIPAFEYAILSMQKG   84 (372)
Q Consensus        13 d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~-------~~~~~~~~~g~~~~~~~le~~l~~m~~G   84 (372)
                      ..+++|+|+++|+|.. |..||.|+|||++++.+| ++||+++..       .. |++|.+|.+.+++||+++|.+|++|
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG-~~fdss~~~~~~~~~~~~-p~~f~lG~~~~i~G~e~~l~gm~~G   80 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDG-TVFDTNIQTSSKKKKNAK-PLSFKVGVGKVIRGWDEALLTMSKG   80 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTS-CEEEECCCCSSSTTTTCC-CEEEETTSSSSCHHHHHHHTTCCTT
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCC-CEEEeccccccccccCCC-CEEEEECCCChhHHHHHHHhCCCCC
Confidence            3589999999999975 999999999999998765 599999753       36 9999999999999999999999999


Q ss_pred             cEEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEee
Q psy8368          85 EKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINF  121 (372)
Q Consensus        85 e~~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~  121 (372)
                      |++.|.||++++||..|.++ .||++++++|+|+|+++
T Consensus        81 e~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           81 EKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             CEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             CEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            99999999999999999876 79999999999999976

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.89  E-value=2.4e-22  Score=167.76  Aligned_cols=112  Identities=29%  Similarity=0.365  Sum_probs=103.5

Q ss_pred             CCCccccCCCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCC
Q psy8368           5 PYGKEQIQDGKLMKKIKEKGFGE--NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ   82 (372)
Q Consensus         5 ~~~~di~~d~~i~k~il~~G~g~--~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~   82 (372)
                      ..|.+++.+|.+.++|+++|+|.  .|..||.|+|||++++.+| ++||++    . |++|.+|.+.+++||+++|.+|+
T Consensus        34 ~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG-~~fds~----~-p~~f~lG~g~vi~G~eeaL~gMk  107 (157)
T 2jwx_A           34 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENG-TRVQEE----P-ELVFTLGDCDVIQALDLSVPLMD  107 (157)
T ss_dssp             CSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTS-CEEEEE----E-EEEEETTTTSSCHHHHHHTTTSC
T ss_pred             cccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCC-CEeecC----C-CEEEEeCCCChhHHHHHHHcCCC
Confidence            35778999999999999999997  6999999999999998765 599984    4 99999999999999999999999


Q ss_pred             CCcEEEEEecCCCccCCCC-CCCCCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALG-CPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g-~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +|+++.|.||++++||..+ .++.||+|++++|+|+|+++.
T Consensus       108 ~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~  148 (157)
T 2jwx_A          108 VGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV  148 (157)
T ss_dssp             TTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEE
Confidence            9999999999999999999 666899999999999999998

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.88  E-value=7.5e-22  Score=160.34  Aligned_cols=108  Identities=32%  Similarity=0.514  Sum_probs=98.5

Q ss_pred             CCCcEEEE--EEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEE
Q psy8368          12 QDGKLMKK--IKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD   88 (372)
Q Consensus        12 ~d~~i~k~--il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~   88 (372)
                      ...|++++  ++++|+|.. |..||.|+|+|++++.+| ++||+++.++. |++|.+|.+.+++||+++|.+|++||++.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~   97 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDG-KQFDSSRSRGK-PFQFTLGAGEVIKGWDQGVATMTLGEKAL   97 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTS-CEEECTTTTTC-CEEEETTSTTSCHHHHHHHHHSCTTEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCC-CEEEccCcCCC-CEEEEeCCCCccHHHHHHHhCCCCCCEEE
Confidence            45566555  999999998 999999999999998664 59999987667 99999999999999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368          89 FFASYELCFGALGCPPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        89 ~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~  121 (372)
                      |.|||+++||..+.++.||+|++++|+|+|++|
T Consensus        98 v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           98 FTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            999999999999988889999999999999865

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=158.59  Aligned_cols=111  Identities=23%  Similarity=0.369  Sum_probs=100.8

Q ss_pred             ccCCCcEEEEEEecCC--CCCCCCCCEEEEEEEEEEcCCceeEeeccc--CCCcCeEEEcCCCccchHHHHHhccCCCCc
Q psy8368          10 QIQDGKLMKKIKEKGF--GENPVLGAHVQVHYMYYAEANELPIDITYL--RKSIPERFQLGSSGLIPAFEYAILSMQKGE   85 (372)
Q Consensus        10 i~~d~~i~k~il~~G~--g~~~~~g~~V~v~y~~~~~~~~~~~dst~~--~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge   85 (372)
                      +..++++.++++++|+  |..|..||.|+|||++++.+++++||+++.  ... |++|.+|.+.+++||+++|.+|++||
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~-p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQ-PIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTC-CEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCc-CEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            4567889999999998  667999999999999999834569999974  346 99999999999999999999999999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          86 KSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        86 ~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      ++.|.|||+++||..+.+ .||++++++|+|+|+++.
T Consensus        87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~  122 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIR  122 (125)
T ss_dssp             EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEE
T ss_pred             EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEE
Confidence            999999999999999866 799999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.88  E-value=5.2e-22  Score=166.98  Aligned_cols=153  Identities=21%  Similarity=0.265  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDC  226 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~  226 (372)
                      +.++.+..+++.|+.+++.|+|.+|+..|.+|+.+++...   .+.++...........+++|+|.||+++|+|.+|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4578899999999999999999999999999999975532   3344455566777789999999999999999999999


Q ss_pred             HHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         227 ASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       227 ~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      |+++|+    ++|+++++|+++|.+|..+|+|++|+.+|+++++++|++.  ..+...+..+...++.+.+++++.|++|
T Consensus        86 ~~~al~----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~l~~~~~~~~~~~~~~k~~~~~~  159 (162)
T 3rkv_A           86 SSEVLK----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA--SVVAREMKIVTERRAEKKADSRVTYSKM  159 (162)
T ss_dssp             HHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHTTSSCC-----
T ss_pred             HHHHHh----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998    8999999999999999999999999999999999999986  2568899999999999999999999999


Q ss_pred             cc
Q psy8368         307 FS  308 (372)
Q Consensus       307 ~~  308 (372)
                      |+
T Consensus       160 f~  161 (162)
T 3rkv_A          160 FQ  161 (162)
T ss_dssp             --
T ss_pred             cC
Confidence            86

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=3.4e-22  Score=163.64  Aligned_cols=112  Identities=29%  Similarity=0.365  Sum_probs=104.3

Q ss_pred             CCCccccCCCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCC
Q psy8368           5 PYGKEQIQDGKLMKKIKEKGFGE--NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ   82 (372)
Q Consensus         5 ~~~~di~~d~~i~k~il~~G~g~--~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~   82 (372)
                      +.|.+++.+|+++++|+++|+|.  .|..||.|+|||++++.+| ++|+++    . |++|.+|.+.+++||+++|.+|+
T Consensus         8 ~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG-~~fds~----~-p~~f~lG~g~~i~G~e~~L~gm~   81 (135)
T 2d9f_A            8 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENG-TRVQEE----P-ELVFTLGDCDVIQALDLSVPLMD   81 (135)
T ss_dssp             SSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSS-CEEEEE----E-EEEEETTSCCSCTTTTTTGGGSC
T ss_pred             ccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCC-CEEecC----C-CEEEEeCCCChhHHHHHHHhCCC
Confidence            57899999999999999999997  6999999999999998765 589983    4 99999999999999999999999


Q ss_pred             CCcEEEEEecCCCccCCCC-CCCCCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALG-CPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g-~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +|+++.|.||++++||..+ .++.||+|++++|+|+|+++.
T Consensus        82 ~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~  122 (135)
T 2d9f_A           82 VGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV  122 (135)
T ss_dssp             TTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEee
Confidence            9999999999999999998 666899999999999999998

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.87  E-value=7.3e-22  Score=166.70  Aligned_cols=108  Identities=25%  Similarity=0.427  Sum_probs=100.6

Q ss_pred             cCCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDF   89 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~   89 (372)
                      +.++|++++++++|+|.. |..||.|+|||++++.+| ++||+++.++. |++|.+|  .+++||+++|.+|++|+++.|
T Consensus        34 ~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG-~~fdss~~~g~-p~~f~lg--~vI~G~eeaL~gMk~Ge~~~~  109 (167)
T 1jvw_A           34 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDG-TVFDSSRERGK-PTTFRPN--EVIKGWTEALQLMREGDRWRL  109 (167)
T ss_dssp             ECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTS-CEEEEHHHHTS-CEEECGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             ECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCC-CEEeeccccCC-CEEEEeC--chhHHHHHHHcCCCCCCEEEE
Confidence            466789999999999998 999999999999998765 59999987667 9999996  899999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          90 FASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        90 ~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      .|||+++||..+.++.||||++++|+|+|+++.
T Consensus       110 ~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~  142 (167)
T 1jvw_A          110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK  142 (167)
T ss_dssp             EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEG
T ss_pred             EECchhhCCCCCCCCCcCCCCeEEEEEEEEEEE
Confidence            999999999999888899999999999999998

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.87  E-value=3e-22  Score=167.64  Aligned_cols=111  Identities=20%  Similarity=0.366  Sum_probs=95.4

Q ss_pred             cCCCcEEEEEEecCCCCCC--CCCCEEEEEEEEEEcC-CceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEE
Q psy8368          11 IQDGKLMKKIKEKGFGENP--VLGAHVQVHYMYYAEA-NELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKS   87 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~--~~g~~V~v~y~~~~~~-~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~   87 (372)
                      ++++||.|+|+++|+|..|  ..|+.|+|||++++.+ ++++||||+.++. |++|.+|.+++|+||+++|.+|++||++
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~-P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGK-PMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTC-CEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             ccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCC-CEEEEecCCCccHHHHHHHhcCccCceE
Confidence            4788999999999999864  6899999999999864 3569999999888 9999999999999999999999999999


Q ss_pred             EEEecCCCccCCC-----------CCCC--------------------------CCCCCCcEEEEEEEEeee
Q psy8368          88 DFFASYELCFGAL-----------GCPP--------------------------RIPAKADLLFEVHLINFS  122 (372)
Q Consensus        88 ~~~i~~~~~yg~~-----------g~~~--------------------------~ip~~~~~~~~iel~~~~  122 (372)
                      .|+|||+++||..           +..+                          .|+++++|+|+|+|++|.
T Consensus        86 ~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve  157 (165)
T 2lkn_A           86 QFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVE  157 (165)
T ss_dssp             EEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEE
T ss_pred             EEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEc
Confidence            9999999999821           1100                          134457899999999999

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.87  E-value=2e-21  Score=170.33  Aligned_cols=110  Identities=26%  Similarity=0.394  Sum_probs=102.9

Q ss_pred             ccCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEE
Q psy8368          10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDF   89 (372)
Q Consensus        10 i~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~   89 (372)
                      ++.++|++++++++|+|..|..||.|+|||++++.+| ++||+++..+. |++|.+|.+.+++||+++|.+|++|+++.|
T Consensus       100 ~~~~sGl~~~vl~~G~G~~~~~gd~V~v~Y~g~l~dG-~~fdss~~~~~-P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A          100 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG-QKFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             EECTTSCEEEEEECCCSCBCCTTCEEEEEEEEEETTS-CEEEESGGGTC-CEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             cCCCCceEEEEEEcCCCCcCCCCCEEEEEEEEEECCC-CEEEEccccCC-CEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            4567899999999999988999999999999999765 59999988777 999999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368          90 FASYELCFGALGCPPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        90 ~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~  121 (372)
                      .|||+++||..|.++.||+|++++|+|+|++|
T Consensus       178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999998889999999999999875

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.86  E-value=2.3e-21  Score=169.78  Aligned_cols=105  Identities=24%  Similarity=0.353  Sum_probs=98.2

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      +.++|++++++++|+|..|..||.|+|||++++.+| ++|||+   +. |++|.+|  .+++||+++|.+|++|+++.|.
T Consensus       114 ~~~sGl~y~vl~~G~G~~p~~gd~V~V~Y~g~l~dG-~vfDss---~~-P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          114 ELADGILMTELTPGTGPKPDANGRVEVRYVGRLPDG-KIFDQS---TQ-PQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             ECGGGCEEEEEECCCSCCCCTTSEEEEEEEEECTTS-CEEEEC---SS-CEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             ECCCCeEEEEEecCCCccCCCCCEEEEEEEEEECCC-CEeecc---CC-cEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            466789999999999998999999999999998875 599998   55 9999999  8999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||+++||..|.++.|||+++++|+|+|++|+
T Consensus       187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999999999988899999999999999886

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.86  E-value=4.4e-21  Score=175.92  Aligned_cols=114  Identities=36%  Similarity=0.608  Sum_probs=108.0

Q ss_pred             Ccccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCC
Q psy8368           7 GKEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK   83 (372)
Q Consensus         7 ~~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~   83 (372)
                      ++||+  ++++++|+|+++|+|.. |..||.|+|||++++.+| ++||+++.++. |++|.+|.+.+++||+.+|.+|++
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~g~vi~G~e~aL~gm~~  119 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG-TKFDSSLDRKD-KFSFDLGKGEVIKAWDIAIATMKV  119 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTS-CEEEESTTSSS-CEEEETTTTSSCHHHHHHHTTCCT
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCC-CEEEecccCCC-CEEEEECCcChhHHHHHHHhcCCC
Confidence            78999  89999999999999998 999999999999998765 59999987667 999999999999999999999999


Q ss_pred             CcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          84 GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        84 Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      ||++.|.|||+++||..|.++.||++++++|+|+|.++.
T Consensus       120 Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~  158 (280)
T 1q1c_A          120 GEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  158 (280)
T ss_dssp             TCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeec
Confidence            999999999999999999888999999999999999988

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.86  E-value=4.2e-21  Score=168.16  Aligned_cols=108  Identities=24%  Similarity=0.356  Sum_probs=100.5

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      +..+|++++|+++|+|..|..||.|+|||++++.+| ++||+++.++. |++|.+|  .+++||+++|.+|++|+++.|.
T Consensus       103 ~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~dG-~vfdss~~~g~-p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  178 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDG-TVFDSTEKTGK-PATFQVS--QVIPGWTEALQLMPAGSTWEIY  178 (213)
T ss_dssp             ECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETTS-CEEEEHHHHCS-CEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             ECCCccEEEEEecCCCccCCCCCEEEEEEEEEECCC-CEEeeccccCC-CEEEEcC--chhhHHHHHHcCCCCCCEEEEE
Confidence            466789999999999988999999999999998865 59999987667 9999996  8999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||+++||..+.++.||||++++|+|+|+++.
T Consensus       179 IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          179 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             ECchhccCccCCCCCCCCCCeEEEEEEEEEEE
Confidence            99999999999877899999999999999987

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.85  E-value=4e-21  Score=156.10  Aligned_cols=108  Identities=29%  Similarity=0.433  Sum_probs=98.7

Q ss_pred             CCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhcc------CCCCc
Q psy8368          12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS------MQKGE   85 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~------m~~Ge   85 (372)
                      ..+|++++++++|+|..|..||.|+|||++++.+| ++||+++.++. |++|.+|.+.+++||+++|.+      |++|+
T Consensus        10 ~~~Gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~dG-~~fdss~~~~~-p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A           10 SPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENG-KVFDSSYNRGK-PLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             CTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTTS-CEEEEHHHHTS-CEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             CCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEECCC-CEEEecCCCCC-CEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            56789999999999988999999999999998764 59999986566 999999999999999999998      99999


Q ss_pred             EEEEEecCCCccCCCCCC-----CCCCCCCcEEEEEEEEee
Q psy8368          86 KSDFFASYELCFGALGCP-----PRIPAKADLLFEVHLINF  121 (372)
Q Consensus        86 ~~~~~i~~~~~yg~~g~~-----~~ip~~~~~~~~iel~~~  121 (372)
                      ++.|.|||+++||..+.+     +.||+|++++|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999998863     479999999999999876

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.84  E-value=1.6e-20  Score=165.56  Aligned_cols=106  Identities=30%  Similarity=0.521  Sum_probs=98.4

Q ss_pred             CCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEe
Q psy8368          12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA   91 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i   91 (372)
                      ..+|++++++++|+|..|..||.|+|||++++.+| ++||+++.++. |++|.+|  .+++||+++|.+|++|+++.|.|
T Consensus       119 ~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~dG-~vfdss~~~g~-p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~I  194 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDG-KEFDNSYTRGE-PLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  194 (224)
T ss_dssp             CTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETTS-CEEEEGGGGTS-CEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             CCCceEEEEEecccCccccCCCEEEEEEEEEeCCC-CEEeeccccCC-CEEEEcC--CcchhHHHHHcCCCCCCEEEEEE
Confidence            56789999999999999999999999999998865 59999988777 9999996  89999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          92 SYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        92 ~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      ||+++||..+.++ ||||++++|+|+|++|+
T Consensus       195 P~~laYG~~g~~~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          195 PPELAYGKAGVPG-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             CGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred             CchhhcCcCCCCC-CCCCCEEEEEEEEEEeC
Confidence            9999999998876 99999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=6.3e-20  Score=148.39  Aligned_cols=115  Identities=20%  Similarity=0.338  Sum_probs=108.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.+..++++|+.+|+.|+|.+|+..|++|+.+.|..               ..+++|+|.||.++|+|++|+.+|+++|+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------------AILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            458899999999999999999999999999997665               68999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                          ++|+++++|+++|.+|..+|++++|+.+|+++++++|+|.   .++..|+.|.
T Consensus        76 ----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~a~~~l~~~l  125 (126)
T 4gco_A           76 ----LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE---EAREGVRNCL  125 (126)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHC
T ss_pred             ----hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH---HHHHHHHHhc
Confidence                9999999999999999999999999999999999999999   9998888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.83  E-value=4.9e-20  Score=153.71  Aligned_cols=137  Identities=12%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      +..+..+++.|+.+++.|+|++|+..|++||++.+..+...   ..........+|+|+|.|+.++|+|++|+.+|++||
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL   84 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999988743221   001122335599999999999999999999999999


Q ss_pred             HhhccC-------CCCchhHH----HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         232 QFASHF-------ATKDVKLF----FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       232 ~~~~~~-------~p~~~ka~----~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      +    +       +|++.++|    |++|.++..+|++++|+.+|++|++++|++.   .+...+..+++.++....+
T Consensus        85 ~----l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~---~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           85 H----YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK---GETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             H----HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC---SCCTTHHHHHHHHHHHHHH
T ss_pred             H----hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHHHHHH
Confidence            8    7       99999999    9999999999999999999999999999999   9999999998888776543

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=140.27  Aligned_cols=95  Identities=31%  Similarity=0.532  Sum_probs=87.7

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCC
Q psy8368          26 GENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR  105 (372)
Q Consensus        26 g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~  105 (372)
                      |..|..||.|+|||++++.+ |++|++++.+.. |++|.+|.+.+++||+.+|.+|++|+++.|.+|++++||..+.++.
T Consensus         3 g~~~~~gd~V~v~y~~~~~d-G~~~d~s~~~~~-p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~   80 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKLED-GTEFDSSLPQNQ-PFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPK   80 (102)
T ss_dssp             CCCCCTTCEEEEEEEEECTT-SCEEEESTTTTC-CEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTT
T ss_pred             CCcCCCCCEEEEEEEEEECC-CCEEEeCCCCCC-CEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCC
Confidence            34589999999999999865 459999987667 9999999999999999999999999999999999999999988888


Q ss_pred             CCCCCcEEEEEEEEeee
Q psy8368         106 IPAKADLLFEVHLINFS  122 (372)
Q Consensus       106 ip~~~~~~~~iel~~~~  122 (372)
                      ||++++++|+|+|+++.
T Consensus        81 Ip~~~~l~f~v~l~~v~   97 (102)
T 2pbc_A           81 IPGGATLVFEVELLKIE   97 (102)
T ss_dssp             BCTTCCEEEEEEEEEEG
T ss_pred             cCcCCeEEEEEEEEEec
Confidence            99999999999999988

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.80  E-value=1.6e-18  Score=165.98  Aligned_cols=171  Identities=22%  Similarity=0.328  Sum_probs=142.6

Q ss_pred             cccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-CCChHHHHHHHHHHHHH
Q psy8368         128 VRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-VTNYEDQMQLEEYLCRV  206 (372)
Q Consensus       128 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~l~~~l  206 (372)
                      .+.+++.+.+|....   .++++.+..+..++..|+.+++.|+|.+|+..|++|+.+++..+ ....+...........+
T Consensus       199 ~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~  275 (370)
T 1ihg_A          199 GDSHPDFPEDADVDL---KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC  275 (370)
T ss_dssp             CCCSCSSGGGSSSCT---TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred             ccccccccccccccc---ccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHH
Confidence            445666667764432   35677889999999999999999999999999999999765531 11112222345566789


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL  286 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~  286 (372)
                      ++|+|.||+++++|++|+.+|+++|+    ++|+++++++++|.+|..+|++++|+.+|++|++++|++.   .++..+.
T Consensus       276 ~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~---~~~~~l~  348 (370)
T 1ihg_A          276 VLNIGACKLKMSDWQGAVDSCLEALE----IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK---AIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Confidence            99999999999999999999999998    9999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q psy8368         287 KADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      .+...++++.++++..|++||+
T Consensus       349 ~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          349 KVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999884

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.80  E-value=3e-18  Score=148.64  Aligned_cols=167  Identities=22%  Similarity=0.265  Sum_probs=132.4

Q ss_pred             ccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChH-HHHHHHHHHHHHHHHHH
Q psy8368         133 DIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYE-DQMQLEEYLCRVYRNLM  211 (372)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~l~~~l~~Nla  211 (372)
                      ..++.|.|+.      ++....+..++..|+.++..|+|.+|+..|.+++.+.+..+..... .......+...++.|+|
T Consensus        22 ~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           22 AKKSIYDYTD------EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             CCCSGGGCCH------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhhCCH------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            3345666654      3457889999999999999999999999999999988765433222 23334455578999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      .||+++|+|++|+.+|+++++    ++|++.++++++|.+|..+|++++|+.+|+++++++|++.   .++..+..+...
T Consensus        96 ~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~  168 (198)
T 2fbn_A           96 TCYNKNKDYPKAIDHASKVLK----IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL---DIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHH
Confidence            999999999999999999998    8999999999999999999999999999999999999999   999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCC
Q psy8368         292 NQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +++..+..+..++++|.....
T Consensus       169 ~~~~~~~~~~~~~~~f~~~~~  189 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKGPL  189 (198)
T ss_dssp             HHHHHC---------------
T ss_pred             HHHHHHHHHHHHHHHhcccch
Confidence            999999999999999986554

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.79  E-value=5.5e-19  Score=167.98  Aligned_cols=114  Identities=24%  Similarity=0.321  Sum_probs=103.2

Q ss_pred             CccccCCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCceeEeecc-cCCCcCeEEEcCCCccchHHHHHhccCCCC
Q psy8368           7 GKEQIQDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITY-LRKSIPERFQLGSSGLIPAFEYAILSMQKG   84 (372)
Q Consensus         7 ~~di~~d~~i~k~il~~G~g~-~~~~g~~V~v~y~~~~~~~~~~~dst~-~~~~~~~~~~~g~~~~~~~le~~l~~m~~G   84 (372)
                      ..|++.|++++++|+++|.|. .|..||.|+|||++++.+| ++|+++. .+.. |++|.+|.+++++||+++|.+|++|
T Consensus       237 v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG-~~fd~~~~~~~~-p~~f~~G~g~~i~G~e~~l~gm~~G  314 (356)
T 3jxv_A          237 VTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDG-TVFLKKGHDEQE-PFEFKTDEEAVIEGLDRAVLNMKKG  314 (356)
T ss_dssp             EEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSS-CEEEEESCTTSC-CCEEETTTTSSCHHHHHHHTTCCBT
T ss_pred             ccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCC-CEEeeccccCCc-CEEEEECCCccchHHHHHHhCCCCC
Confidence            367889999999999999995 4999999999999999875 4898884 4466 9999999999999999999999999


Q ss_pred             cEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEEeee
Q psy8368          85 EKSDFFASYELCFGALGC--PPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        85 e~~~~~i~~~~~yg~~g~--~~~ip~~~~~~~~iel~~~~  122 (372)
                      |++.|.|||+++||..+.  +..||+|++++|+|+|+++.
T Consensus       315 e~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~  354 (356)
T 3jxv_A          315 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFV  354 (356)
T ss_dssp             CEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEE
T ss_pred             CEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEE
Confidence            999999999999999874  34799999999999999987

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.75  E-value=8.1e-18  Score=154.18  Aligned_cols=107  Identities=33%  Similarity=0.532  Sum_probs=98.1

Q ss_pred             cccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCc---cchHHHHHhccC
Q psy8368           8 KEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG---LIPAFEYAILSM   81 (372)
Q Consensus         8 ~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~---~~~~le~~l~~m   81 (372)
                      .++.  .|++++++++++|+|.. |..||.|+|||++++ + |++|+++      |+.|.+|.+.   +++||+.+|.+|
T Consensus       160 ~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-d-G~~fd~~------~~~f~lG~g~~~~~i~G~e~~l~gm  231 (280)
T 1q1c_A          160 EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-K-DKLFDQR------ELRFEIGEGENLDLPYGLERAIQRM  231 (280)
T ss_dssp             EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-T-TEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTC
T ss_pred             cccccccccceeEEeeecccccccccCCceEEEEEEEEe-C-CEEEecC------CeEEEecCCcccccchhHHHHHhCC
Confidence            4566  89999999999999985 999999999999998 4 5699983      8999999987   599999999999


Q ss_pred             CCCcEEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEeee
Q psy8368          82 QKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFS  122 (372)
Q Consensus        82 ~~Ge~~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~~  122 (372)
                      ++||++.|.|||+++||..+.+. .||+|++++|+|+|++|+
T Consensus       232 k~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~  273 (280)
T 1q1c_A          232 EKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE  273 (280)
T ss_dssp             CTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEE
T ss_pred             CCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEe
Confidence            99999999999999999988776 599999999999999998

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.75  E-value=9.4e-18  Score=159.50  Aligned_cols=115  Identities=25%  Similarity=0.391  Sum_probs=103.6

Q ss_pred             CCCCCCccccCCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhcc
Q psy8368           2 VPVPYGKEQIQDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS   80 (372)
Q Consensus         2 ~~~~~~~di~~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~   80 (372)
                      +.|+...|+..|+++.|+++++|.|.. |..||.|++||++++.+|+ +|+++    . ++.|.+|++.+++||+.+|.+
T Consensus       115 ~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt-~~~~~----~-~~~f~~g~~~v~~gl~~~l~~  188 (356)
T 3jxv_A          115 LSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT-VVSKS----E-GVEFTVKDGHLCPALAKAVKT  188 (356)
T ss_dssp             ---CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSC-EEEEE----E-EEEEEGGGCSSSHHHHHHHTT
T ss_pred             EeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCC-EEecc----C-CEEEEeCCCCcchHHHHHHhh
Confidence            445556788999999999999999976 9999999999999998765 88887    2 799999999999999999999


Q ss_pred             CCCCcEEEEEecCCCccCCCCCCC-----CCCCCCcEEEEEEEEeee
Q psy8368          81 MQKGEKSDFFASYELCFGALGCPP-----RIPAKADLLFEVHLINFS  122 (372)
Q Consensus        81 m~~Ge~~~~~i~~~~~yg~~g~~~-----~ip~~~~~~~~iel~~~~  122 (372)
                      |++||++.++|||+++||+.|.++     .||++++++|+|+|+++.
T Consensus       189 m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~  235 (356)
T 3jxv_A          189 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK  235 (356)
T ss_dssp             CCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEe
Confidence            999999999999999999998865     599999999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=3.8e-17  Score=131.99  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      ..+.+..+++.|+.+++.|+|++|+..|++||.+.|..               ..+++|+|.||+++|+|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            34678899999999999999999999999999997665               689999999999999999999999999


Q ss_pred             HHhhccCCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         231 LQFASHFATKD-------VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       231 L~~~~~~~p~~-------~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      |+    ++|++       .++|+++|.+|..+|++++|+.+|++++.++|+ +   ++...|..+
T Consensus        69 l~----~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~---~~~~~l~~l  125 (127)
T 4gcn_A           69 VE----VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-P---ELVKKVKEL  125 (127)
T ss_dssp             HH----HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-H---HHHHHHHHH
T ss_pred             HH----hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-H---HHHHHHHHh
Confidence            98    55544       468999999999999999999999999999985 4   555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.2e-16  Score=127.83  Aligned_cols=117  Identities=24%  Similarity=0.307  Sum_probs=109.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..++..|+.++..|+|.+|+..|.+++...+..               ..++.|+|.||.++|+|++|+.+++++++ 
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-   66 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIE-   66 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence            47789999999999999999999999999997665               68999999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCccHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA------AKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~------p~~~~~~~~~~~l~~~~~~~  292 (372)
                         ++|+++.+++++|.+|..+|++++|+.+|+++++++      |++.   .+...+..+...+
T Consensus        67 ---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~---~~~~~l~~~~~~l  125 (126)
T 3upv_A           67 ---KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR---EIDQLYYKASQQR  125 (126)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH---HHHHHHHHHHHHC
T ss_pred             ---hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH---HHHHHHHHHHHhh
Confidence               999999999999999999999999999999999999      9999   8998888887653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=6.1e-16  Score=129.02  Aligned_cols=105  Identities=13%  Similarity=0.130  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.+..+...|..++..|+|.+|+..|++++.+.|..               ..+++|+|.||..+|+|++|+.+|+++++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------------VDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            356788999999999999999999999999997765               68999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          ++|+++.+|+++|.||..+|++++|+.+|++|+++.|+..
T Consensus        99 ----l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 ----LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             ----HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                9999999999999999999999999999999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.68  E-value=1.2e-15  Score=128.05  Aligned_cols=120  Identities=14%  Similarity=0.166  Sum_probs=108.9

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|+.++..|+|.+|+..|.+++.+.+..               ..+++|+|.||+++|+|++|+.+++++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            568899999999999999999999999999997665               68999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH--HHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE--IDKEILKADLGNQQ  294 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~--~~~~l~~~~~~~~~  294 (372)
                          ++|++..+|+++|.+|..+|++++|+.+|+++++++|++.   .  +...+..++.++.+
T Consensus        74 ----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           74 ----VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG---SDAMKRGLETTKRKIEE  130 (164)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHHHHH
T ss_pred             ----hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999999999999999999998   6  55666666555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=8.8e-15  Score=121.26  Aligned_cols=116  Identities=17%  Similarity=0.159  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      .....+...|..++..|+|.+|+..|.+++...+..               ..+++++|.||..+|+|++|+.+|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------SRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            346778889999999999999999999999987665               67899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                          ++|+++.+++++|.+|..+|++++|+.+|+++++++|+++   .......++..
T Consensus        84 ----l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~  134 (148)
T 2vgx_A           84 ----MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP---EFXELSTRVSS  134 (148)
T ss_dssp             ----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG---GGHHHHHHHHH
T ss_pred             ----cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC---cchHHHHHHHH
Confidence                9999999999999999999999999999999999999988   54444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.62  E-value=1.3e-14  Score=118.92  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=106.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+...|..++..|+|.+|+..|.+++...+..               ..++.++|.||..+|+|++|+.++++++. 
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-   80 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------ARYFLGLGACRQSLGLYEQALQSYSYGAL-   80 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence            45677889999999999999999999999987655               67899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                         ++|+++.+++++|.+|..+|++++|+..|+++++++|+++   .......++...+..
T Consensus        81 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           81 ---MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP---AHEALAARAGAMLEA  135 (142)
T ss_dssp             ---HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG---GGHHHHHHHHHHHHH
T ss_pred             ---cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHH
Confidence               9999999999999999999999999999999999999998   655555555554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.62  E-value=7.1e-15  Score=118.62  Aligned_cols=120  Identities=23%  Similarity=0.300  Sum_probs=110.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..               ..+++++|.||+.+|+|++|+.+++++++  
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--   71 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALE--   71 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--
Confidence            6788999999999999999999999999987654               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-----CccHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK-----DSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~-----~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                        ++|+++.+++++|.+|..+|++++|+..|.++++++|+     +.   .+...+..+........
T Consensus        72 --~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           72 --LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD---DIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTT---HHHHHHHHHHHHHHHHH
T ss_pred             --hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence              89999999999999999999999999999999999998     77   88888888877665443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=6.7e-15  Score=122.17  Aligned_cols=115  Identities=12%  Similarity=0.033  Sum_probs=96.7

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+...|+.|++.|+|++|+..|.+++.+.|..               ..+++++|.||.++|++++|+.+++++++ 
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~-   93 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------------PKAHRFLGLLYELEENTDKAVECYRRSVE-   93 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCchHHHHHHHHHHHH-
Confidence            45566788999999999999999999999887665               67888999999999999999999999997 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKH-LKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~-~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                         ++|+++.+++++|.+|..+|++++|... +++|++++|+++   .+......+..
T Consensus        94 ---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~---~~~~l~~~ll~  145 (150)
T 4ga2_A           94 ---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP---AVYKLKEQLLD  145 (150)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH---HHHHHHHHHHH
T ss_pred             ---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHH
Confidence               8899999999999999999998876665 588999999998   77776666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=1.7e-14  Score=149.03  Aligned_cols=136  Identities=14%  Similarity=0.145  Sum_probs=120.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.+..+.+.|+.+..+|+|++|+..|++||++.+..               ..+++|+|.+|.++|+|++|+.++++||+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457889999999999999999999999999997665               68899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                          ++|+++.+|+++|.+|..+|++++|+.+|++|++++|++.   .++..++.+....+++.++ ...|++.+....
T Consensus        72 ----l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~---~a~~~Lg~~~~~~g~~~eA-i~~~~~Al~l~P  142 (723)
T 4gyw_A           72 ----ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA---DAHSNLASIHKDSGNIPEA-IASYRTALKLKP  142 (723)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCS
T ss_pred             ----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Confidence                9999999999999999999999999999999999999999   9999999998888777543 344555444433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.59  E-value=2.2e-15  Score=125.16  Aligned_cols=128  Identities=10%  Similarity=0.023  Sum_probs=107.1

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      .|+.+..+|++++|+..|++++...+..               ...++++|.+|+++|+|++|+.+++++++    ++|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~---------------~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~   63 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQK---------------SIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQER   63 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHH---------------HTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC
Confidence            5788889999999999999999876543               46788999999999999999999999998    9999


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         241 DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       241 ~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                      ++.+|+.+|.+|..+|++++|+.+|+++++++|++.   .+...++.+....+++.++.+..+.+.....
T Consensus        64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~aa~~~~~~al~l~  130 (150)
T 4ga2_A           64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK---DLVLKIAELLCKNDVTDGRAKYWVERAAKLF  130 (150)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999   9999999887776655444444444444433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=6.5e-14  Score=122.48  Aligned_cols=132  Identities=15%  Similarity=0.119  Sum_probs=107.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChH-HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYE-DQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      +..+...|..++..|+|.+|+..|.+++...|..+...-. ...........+++++|.||.++|+|++|+.+++++++ 
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence            5677889999999999999999999999987654100000 00000011123444599999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                         ++|+++.+++++|.+|..+|++++|+.+|+++++++|++.   .++..++.+.....
T Consensus        83 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~~  136 (208)
T 3urz_A           83 ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL---AANIFLGNYYYLTA  136 (208)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHH
T ss_pred             ---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHh
Confidence               9999999999999999999999999999999999999999   99999998875544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.57  E-value=7.7e-14  Score=108.44  Aligned_cols=115  Identities=20%  Similarity=0.260  Sum_probs=106.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.||..+|+|++|+.+++++++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-   66 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVD-   66 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHH-
Confidence            46788999999999999999999999999986654               57899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                         .+|++..+++.+|.++..+|++++|+..|+++++++|++.   .++..+..+.+
T Consensus        67 ---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~  117 (118)
T 1elw_A           67 ---LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP---QLKEGLQNMEA  117 (118)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHHHHHHHHH
T ss_pred             ---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHhhc
Confidence               8999999999999999999999999999999999999999   88888777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=4.7e-13  Score=110.93  Aligned_cols=118  Identities=21%  Similarity=0.359  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      ...+.+..+...|..++..|+|..|+..|.+++...+..               ..++.++|.|+..+|+|++|+.++.+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~   72 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATR   72 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            357889999999999999999999999999999986554               57899999999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      +++    .+|.+..+++++|.+|..+|++++|+..|+++++++|++.   .+...+..+.
T Consensus        73 a~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~~~~  125 (166)
T 1a17_A           73 AIE----LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK---DAKMKYQECN  125 (166)
T ss_dssp             HHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHH
T ss_pred             HHH----hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Confidence            998    8999999999999999999999999999999999999998   7776666653

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.54  E-value=1.2e-14  Score=114.58  Aligned_cols=87  Identities=14%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCC
Q psy8368          26 GENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR  105 (372)
Q Consensus        26 g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~  105 (372)
                      +..+..||.|+|+|++++ + |++||++.  .. |+.|.+|.+.++|||+++|.+|++|++..|.||+...||..+.   
T Consensus        27 ~~~~~~gD~V~v~Y~g~~-d-G~~fdss~--~~-p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~---   98 (113)
T 1hxv_A           27 DKKLANGDIAIIDFTGIV-D-NKKLASAS--AQ-NYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---   98 (113)
T ss_dssp             --CCCSSEEEEEEEEEEE-T-TEECSTTC--CS-EEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred             CCCCCCCCEEEEEEEEEE-C-CEEcccCC--cc-CEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC---
Confidence            446899999999999998 5 56999985  45 9999999999999999999999999999999973333887653   


Q ss_pred             CCCCCcEEEEEEEEeee
Q psy8368         106 IPAKADLLFEVHLINFS  122 (372)
Q Consensus       106 ip~~~~~~~~iel~~~~  122 (372)
                        ++++++|+|+|++++
T Consensus        99 --~g~~l~F~V~l~~Vk  113 (113)
T 1hxv_A           99 --QSKPVTFEVVLKAIK  113 (113)
T ss_dssp             --GSCCCEEEEEECCBC
T ss_pred             --CCCEEEEEEEEEEEC
Confidence              578999999998763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.52  E-value=1.9e-13  Score=108.92  Aligned_cols=116  Identities=18%  Similarity=0.300  Sum_probs=107.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....+...|..++..|+|.+|+..|.+++...+..               ..++.++|.||..+++|++|+.+++++++ 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~-   78 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQ-   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHH-
Confidence            47888999999999999999999999999886544               57899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                         .+|.+..+++++|.+|..+|++++|+..|+++++++|.+.   .+...+..+...
T Consensus        79 ---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~  130 (133)
T 2lni_A           79 ---LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK---EAADGYQRCMMA  130 (133)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT---HHHHHHHHHHHH
T ss_pred             ---hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHH
Confidence               8999999999999999999999999999999999999999   888888877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=3e-13  Score=114.90  Aligned_cols=121  Identities=15%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+.+.|+.++.+|+|++|+..|+++++..|..               ..++.++|.||.++|++++|+..+.+++. 
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~a~~~~~~~~~-   67 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---------------VETLLKLGKTYMDIGLPNDAIESLKKFVV-   67 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence            36778899999999999999999999999987665               56677777777777777777777777776 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                         .+|++..+++.+|.++...++++.|+..+.++++++|++.   .+...++.+....+++.
T Consensus        68 ---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~~lg~~~~~~g~~~  124 (184)
T 3vtx_A           68 ---LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA---DAYYKLGLVYDSMGEHD  124 (184)
T ss_dssp             ---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHH
T ss_pred             ---cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHhCCch
Confidence               6677777777777777777777777777777777777777   67767766666665554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.51  E-value=5.5e-13  Score=105.39  Aligned_cols=120  Identities=20%  Similarity=0.226  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ...+..+...|..++..|+|..|+..|.+++...+..               ..++.++|.++..+|+|++|+.++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~   73 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDCERAI   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            3567889999999999999999999999999986544               5789999999999999999999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      +    .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+..+...++
T Consensus        74 ~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           74 C----IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE---TYKSNLKIAELKLR  128 (131)
T ss_dssp             H----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHT
T ss_pred             h----cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHh
Confidence            8    8999999999999999999999999999999999999999   88888888776544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.51  E-value=3.9e-13  Score=106.44  Aligned_cols=119  Identities=16%  Similarity=0.225  Sum_probs=106.3

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|..|+..|.+++...+..               ..+++++|.+|..+|+|++|+.++.++++ 
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~-   66 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE-   66 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHh-
Confidence            46788999999999999999999999999986554               57899999999999999999999999998 


Q ss_pred             hccCCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKD-------VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       234 ~~~~~p~~-------~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                         ..|.+       ..+++++|.+|..+|++++|+..|++++++.| +.   .+...+..+...++..
T Consensus        67 ---~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           67 ---VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TP---DVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             ---HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CH---HHHHHHHHHHHHHHHC
T ss_pred             ---hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CH---HHHHHHHHHHHHHHHh
Confidence               55555       88999999999999999999999999999999 57   7888888887766543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.49  E-value=1.4e-13  Score=109.87  Aligned_cols=101  Identities=12%  Similarity=0.076  Sum_probs=90.1

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..++..|++.+|+..|.+++...+..               ..++.++|.|+..+|++++|+..++++++    
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~----   79 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARM----   79 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence            45778999999999999999999999997765               68899999999999999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++|++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus        80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999999999999999999999876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.49  E-value=1e-12  Score=115.73  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=110.2

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhh-hccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLI-NTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ..+...|..++..|+|.+|+..|.+++...+ ..               ..+++++|.||..+|+|++|+.+++++++  
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~--   70 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIK--   70 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHH--
Confidence            6788999999999999999999999999875 33               46788899999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI-------DKEILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+       ...++.+....+++. .....|.+.+
T Consensus        71 --~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~~~~~~~-~A~~~~~~al  144 (228)
T 4i17_A           71 --KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA---TIEKLYAIYYLKEGQKFQQAGNIE-KAEENYKHAT  144 (228)
T ss_dssp             --TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHT
T ss_pred             --hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHHhHHHHHhccHH-HHHHHHHHHH
Confidence              9999999999999999999999999999999999999998   55       444444544444443 3345555555


Q ss_pred             cC
Q psy8368         308 SS  309 (372)
Q Consensus       308 ~~  309 (372)
                      ..
T Consensus       145 ~~  146 (228)
T 4i17_A          145 DV  146 (228)
T ss_dssp             TS
T ss_pred             hc
Confidence            54

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.9e-13  Score=108.63  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=105.4

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..            .....++.++|.||..+++|++|+.+|+++++  
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--   93 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIE--   93 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--
Confidence            6778899999999999999999999999875431            12357899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                        .+|++..+++++|.+|..+|++++|+..|+++++++|++.   .++..+..+..
T Consensus        94 --~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~  144 (148)
T 2dba_A           94 --KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK---VFQEALRNISG  144 (148)
T ss_dssp             --HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHC
T ss_pred             --hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHh
Confidence              8999999999999999999999999999999999999999   88887777653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=3.2e-13  Score=139.60  Aligned_cols=121  Identities=12%  Similarity=0.088  Sum_probs=113.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+.+.|+.+.+.|++++|+..|++|+++.+..               ..+++|+|.+|.++|+|++|+.++++||+  
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--  105 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQ--  105 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            5778899999999999999999999999997665               68999999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                        ++|++..+|+++|.+|..+|++++|+.+|++|++++|++.   .++..++.+...+.++.+
T Consensus       106 --l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~---~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A          106 --INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP---DAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCCTT
T ss_pred             --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHhhhhhHHHhcccHHH
Confidence              9999999999999999999999999999999999999999   999999998877665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.47  E-value=4.8e-13  Score=117.73  Aligned_cols=121  Identities=12%  Similarity=-0.001  Sum_probs=100.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++.+|+..|++++...|..               ..+++++|.++.++|++++|+..++++++  
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~--   67 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD---------------PEALYWLARTQLKLGLVNPALENGKTLVA--   67 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            3456778889999999999999999999886655               57788888888888888888888888887  


Q ss_pred             ccCCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGL-----------QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l-----------~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                        ++|+++.+++.+|.+|..+           |++++|+..|+++++++|++.   .++..++.+....+++.+
T Consensus        68 --~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~  136 (217)
T 2pl2_A           68 --RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA---PLHLQRGLVYALLGERDK  136 (217)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHH
T ss_pred             --hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChHH
Confidence              8888888888888888888           888888888888888888888   888888887777666644

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.47  E-value=1.1e-12  Score=104.48  Aligned_cols=115  Identities=11%  Similarity=0.030  Sum_probs=99.7

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..++..|+|.+|+..|.+++...+..+            ....+++++|.||+++|+|++|+.+++++++    
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~----   67 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV------------YTPNALYWLGESYYATRNFQLAEAQFRDLVS----   67 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH----
Confidence            456789999999999999999999999876542            1136889999999999999999999999998    


Q ss_pred             CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         237 FATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       237 ~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      .+|++   ..+++++|.+|..+|++++|+..|+++++..|++.   .+......+..
T Consensus        68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~a~~~l~~  121 (129)
T 2xev_A           68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD---AARVAQERLQS  121 (129)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHH
T ss_pred             HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHH
Confidence            88998   88999999999999999999999999999999998   55555544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.47  E-value=8.4e-13  Score=121.10  Aligned_cols=102  Identities=25%  Similarity=0.357  Sum_probs=96.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..++..|+.++..|+|.+|+..|.+|+...+..               ..+++|+|.||.++|+|++|+.+++++++  
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~--   66 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALE--   66 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--
Confidence            5678899999999999999999999999987654               68899999999999999999999999997  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                        ++|++.++++++|.+|..+|++++|+.+|+++++++|++
T Consensus        67 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           67 --LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             --SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence              999999999999999999999999999999999999977

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.46  E-value=3.8e-13  Score=118.44  Aligned_cols=70  Identities=26%  Similarity=0.348  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccC-------------CCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLR-------------KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYEL   95 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~-------------~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~   95 (372)
                      ++.||.|+|||++++ + |++||||+..             .. |++|.+|.+.++|||+.+|.+|++|++..|.|||++
T Consensus         2 i~~Gd~V~v~Y~g~l-d-G~vfDss~~~~A~e~gi~~~~~~~~-P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~   78 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-D-GKLFDTTNEELAKKEGIYNPAMIYG-PVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEK   78 (231)
T ss_dssp             CCTTCEEEEEEEEEE-T-TEEEEESCHHHHHHTTCCCTTSCCS-CEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEE-C-CEEEEeccchhcccccccccccCCC-CEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHH
Confidence            578999999999999 5 5699999752             25 999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q psy8368          96 CFGALG  101 (372)
Q Consensus        96 ~yg~~g  101 (372)
                      |||..+
T Consensus        79 AYGe~~   84 (231)
T 3prb_A           79 AFGKRD   84 (231)
T ss_dssp             TTCCCC
T ss_pred             hcCCCC
Confidence            999865

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.45  E-value=8.2e-13  Score=111.50  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG  101 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g  101 (372)
                      ++.||.|+|+|++++.+ |++|||++.+ . |++|.+|.+.++|||+.+|.+|++|++..|.|||+.+||..+
T Consensus         3 i~~gd~V~v~Y~g~~~d-G~~fdss~~~-~-P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTED-GVLVDESPVS-A-PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETT-SCEEEECCSS-S-CEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECC-CCEEeeccCC-c-CEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            67899999999999875 4699999754 4 999999999999999999999999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.44  E-value=3.8e-13  Score=111.81  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=93.3

Q ss_pred             hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhhcc
Q psy8368         167 NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY----------KLTCDCASKALQFASH  236 (372)
Q Consensus       167 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y----------~~Ai~~~~~aL~~~~~  236 (372)
                      +.++|++|+..|.+++.+.|..               ...++|+|.|+..++++          ++|+..|++||+    
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~---------------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----   74 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----   74 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHhHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----
Confidence            4578999999999999998776               68999999999999875          599999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         237 FATKDVKLFFVWGKALIGLQ-----------EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~-----------~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      ++|++..||+++|.+|..+|           ++++|+.+|++|++++|++.   ..++.+..+.+...
T Consensus        75 ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---~y~~al~~~~ka~e  139 (158)
T 1zu2_A           75 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---HYLKSLEMTAKAPQ  139 (158)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHTHHH
T ss_pred             hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhCHh
Confidence            99999999999999999885           89999999999999999999   77777776655433

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.44  E-value=2.8e-13  Score=112.64  Aligned_cols=71  Identities=25%  Similarity=0.329  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccC-------------CCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLR-------------KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYEL   95 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~-------------~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~   95 (372)
                      ++.||.|+|||++++ + |++||||+..             .. |++|.+|.+.++|||+++|.+|++|+++.|.|||++
T Consensus         2 i~~Gd~V~v~Y~g~l-d-G~vfDss~~~~a~~~g~~~~~~~~~-P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~   78 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-D-GKLFDTTNEELAKKEGIYNPAMIYG-PVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEK   78 (157)
T ss_dssp             CCTTCEEEEEEEEEE-T-TEEEEESCHHHHHHHTCCCTTSCCS-CEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGG
T ss_pred             CCCCCEEEEEEEEEE-C-CEEEEeccccccccccccccccCCC-CEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHH
Confidence            578999999999999 5 5699999753             25 999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q psy8368          96 CFGALGC  102 (372)
Q Consensus        96 ~yg~~g~  102 (372)
                      +||..+.
T Consensus        79 aYG~~~~   85 (157)
T 3pr9_A           79 AFGKRDP   85 (157)
T ss_dssp             TTCCCCG
T ss_pred             hcCCCCh
Confidence            9998764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.43  E-value=8e-13  Score=126.81  Aligned_cols=120  Identities=10%  Similarity=0.005  Sum_probs=75.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ-YKLTCDCASKALQ  232 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~-y~~Ai~~~~~aL~  232 (372)
                      .+..+...|..+...|++.+|+..|.++|.+.+..               ..+++++|.++..+|+ |++|+.+|+++|+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            35556666677777777777777777777665544               4556666666666664 6666666666665


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                          ++|++..+|+++|.+|..+|++++|+.+|++|++++|+|.   .++..++.+...++.+
T Consensus       161 ----l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~---~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          161 ----EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCC
T ss_pred             ----HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcCCh
Confidence                6666666666666666666666666666666666666666   6666555555544433

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.43  E-value=3e-13  Score=113.55  Aligned_cols=72  Identities=22%  Similarity=0.357  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG  101 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g  101 (372)
                      .+..||.|+|||++++.+| ++||+++.++. |++|.+|.+.++|||+.+|.+|++|+++.|.|||+++||..+
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG-~vfDss~~~~~-P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDG-TTAESTRNNGK-PALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTS-CEEEEHHHHTS-CEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC
T ss_pred             cCCCCCEEEEEEEEEECCC-CEEEecCCCCC-CEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            4789999999999998765 59999987666 999999999999999999999999999999999999999865

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=3.1e-12  Score=112.50  Aligned_cols=134  Identities=16%  Similarity=0.071  Sum_probs=118.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc-----------cCHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN-----------KQYKLT  223 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl-----------~~y~~A  223 (372)
                      +..+...|..++..|++.+|+..|++++...|..               ..++.++|.+|.++           |++++|
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRY---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            5678899999999999999999999999997665               67899999999999           999999


Q ss_pred             HHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         224 CDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARC  303 (372)
Q Consensus       224 i~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  303 (372)
                      +..++++++    ++|++..+++.+|.+|..+|++++|+..|+++++++ ++.   .++..++.+....+++.+. ...|
T Consensus       104 ~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~---~~~~~la~~~~~~g~~~~A-~~~~  174 (217)
T 2pl2_A          104 LSVLKDAER----VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP---EIRSALAELYLSMGRLDEA-LAQY  174 (217)
T ss_dssp             HHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH---HHHHHHHHHHHHHTCHHHH-HHHH
T ss_pred             HHHHHHHHH----hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch---HHHHHHHHHHHHcCCHHHH-HHHH
Confidence            999999998    999999999999999999999999999999999999 888   9999999998887776543 4555


Q ss_pred             HhhccCCCC
Q psy8368         304 MKMFSSSSS  312 (372)
Q Consensus       304 ~~~~~~~~~  312 (372)
                      .+.+...+.
T Consensus       175 ~~al~~~P~  183 (217)
T 2pl2_A          175 AKALEQAPK  183 (217)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHHhCCC
Confidence            555544433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.42  E-value=8.6e-12  Score=97.54  Aligned_cols=114  Identities=19%  Similarity=0.304  Sum_probs=104.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++..|+..|.+++...+..               ..++.++|.++...|+|++|+..++++++  
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~--   71 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALE--   71 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence            5677889999999999999999999999886543               46789999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                        .+|.+..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+..+..
T Consensus        72 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~  122 (125)
T 1na0_A           72 --LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAKQNLGNAKQ  122 (125)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred             --hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHH
Confidence              8899999999999999999999999999999999999999   88888777654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.42  E-value=1.4e-12  Score=125.12  Aligned_cols=115  Identities=5%  Similarity=-0.025  Sum_probs=109.1

Q ss_pred             HHHHHHhhHHHHhccC-HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         155 AQELGASGKNAFNDKN-IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ...+..+|..+...|+ |.+|+..|.+|+.+.+..               ..+|+|+|.++..+|+|++|+.+|+++|+ 
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~-  194 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------------YQVWHHRRVLVEWLRDPSQELEFIADILN-  194 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence            5778899999999997 999999999999998776               68999999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                         ++|++..+|+++|.++..+|++++|+.+|+++++++|++.   .++..++.+...
T Consensus       195 ---ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~---~a~~~lg~~l~~  246 (382)
T 2h6f_A          195 ---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN---SVWNQRYFVISN  246 (382)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred             ---hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Confidence               9999999999999999999999999999999999999999   999999988776

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.41  E-value=6.3e-13  Score=104.95  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=83.0

Q ss_pred             hccCHHHHHHHHHHHHHh---hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh
Q psy8368         167 NDKNIVSAVRRYRDAVKL---LINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK  243 (372)
Q Consensus       167 ~~g~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k  243 (372)
                      ..|+|.+|+..|.+++..   .+..               ..++.++|.||..+|+|++|+.+++++++    ++|++..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~   62 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL---------------AECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNHQA   62 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchH
Confidence            368999999999999987   2332               67899999999999999999999999998    8999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      +++++|.+|..+|++++|+..|++++.+.|+++   .+..
T Consensus        63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~   99 (117)
T 3k9i_A           63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE---TIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH---HHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHH
Confidence            999999999999999999999999999999998   6543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.40  E-value=2.2e-12  Score=103.67  Aligned_cols=101  Identities=14%  Similarity=0.103  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.|+|.+|++.|+|++|+.+++++|+    ++|.++.+|+++|.+|..+|++++|+.+|++|++++|++.   .++.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~   85 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI---KGYI   85 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh---HHHH
Confidence            67889999999999999999999999998    9999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .++.+...++++.+ ....|.+.+...+.
T Consensus        86 ~lg~~~~~~~~~~~-A~~~~~~al~l~P~  113 (126)
T 4gco_A           86 RKAACLVAMREWSK-AQRAYEDALQVDPS  113 (126)
T ss_dssp             HHHHHHHHTTCHHH-HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHCCCHHH-HHHHHHHHHHHCcC
Confidence            99999988887754 44455555554444

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.40  E-value=1.4e-12  Score=108.07  Aligned_cols=73  Identities=19%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC  102 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~  102 (372)
                      .++.||.|++||++++..+|++|||++.. . |++|.+|.+.++|||+.+|.+|++|++..|.|||+.+||..+.
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~-p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNISK-E-PLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTTT-C-CEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCCC-c-CEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            37899999999999987235699999753 4 9999999999999999999999999999999999999998753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.39  E-value=1.2e-12  Score=129.16  Aligned_cols=116  Identities=21%  Similarity=0.350  Sum_probs=107.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.+..+...|+.+++.|+|++|+..|++|++..+..               ..+++|+|.||.++|+|++|+.+++++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456778889999999999999999999999986654               68999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                          ++|+++.+++++|.+|..+|++++|+..|++|++++|++.   .+...+..+..
T Consensus        69 ----l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~  119 (477)
T 1wao_1           69 ----LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK---DAKMKYQECNK  119 (477)
T ss_dssp             ----SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT---THHHHHHHHHH
T ss_pred             ----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Confidence                9999999999999999999999999999999999999999   88888888743

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.38  E-value=9.1e-12  Score=109.53  Aligned_cols=118  Identities=14%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|+|++|+.+++++++   
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~---  104 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIK---  104 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH---
Confidence            456669999999999999999999999886553               67899999999999999999999999998   


Q ss_pred             cCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDV-------KLFFVWGKALIGLQEWTSAIKHLKTARKLAAK--DSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       236 ~~~p~~~-------ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~--~~~~~~~~~~l~~~~~~~~~~  295 (372)
                       ++|++.       .+|+++|.++..+|++++|+..|+++++++|+  +.   .+...++.+....+..
T Consensus       105 -~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          105 -AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT---DALYSLGVLFYNNGAD  169 (228)
T ss_dssp             -HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             -HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH---HHHHHHHHHHHHHHHH
Confidence             899988       77999999999999999999999999999999  88   8888888887665544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.37  E-value=2e-11  Score=103.48  Aligned_cols=130  Identities=15%  Similarity=0.068  Sum_probs=114.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++.+|+..+.+++...+..               ..++.++|.++...+++..|+..+.++++  
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--  101 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---------------AEAYYILGSANFMIDEKQAAIDALQRAIA--  101 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            5678889999999999999999999999887655               57888999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                        ++|.+..+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++.++ ...|.+.+
T Consensus       102 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A-~~~~~~al  168 (184)
T 3vtx_A          102 --LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI---RAYQSIGLAYEGKGLRDEA-VKYFKKAL  168 (184)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHH-HHHHHHHH
T ss_pred             --hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh---hHHHHHHHHHHHCCCHHHH-HHHHHHHH
Confidence              8999999999999999999999999999999999999999   9999999998887776543 34444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.37  E-value=4.5e-12  Score=97.41  Aligned_cols=101  Identities=13%  Similarity=0.119  Sum_probs=93.1

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|+|++|+.+++++++    
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----   68 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVIN----   68 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH----
Confidence            34568899999999999999999999986544               56889999999999999999999999998    


Q ss_pred             CCCC--chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCc
Q psy8368         237 FATK--DVKLFFVWGKALIGL-QEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       237 ~~p~--~~ka~~r~a~a~~~l-~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .+|.  +..+++.+|.++..+ |++++|+.++.+++...|++.
T Consensus        69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            8999  999999999999999 999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.37  E-value=1e-12  Score=109.38  Aligned_cols=100  Identities=10%  Similarity=-0.063  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...++++|.+++++|+|++|+..|++++.    ++|+++.+|+.+|.+|..+|+|++|+.+|++|++++|+++   .++.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~---~~~~  108 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY---TPVF  108 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc---HHHH
Confidence            57899999999999999999999999998    9999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                      .++.+...++++.+ ....|.+.+...+
T Consensus       109 ~lg~~~~~lg~~~e-A~~~~~~al~l~~  135 (151)
T 3gyz_A          109 HTGQCQLRLKAPLK-AKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHTTCHHH-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHH-HHHHHHHHHHhCC
Confidence            99999998888754 4445555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.36  E-value=2.3e-11  Score=102.65  Aligned_cols=103  Identities=16%  Similarity=0.237  Sum_probs=96.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHH-HHHccCH--HHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVC-YNNNKQY--KLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~-~~kl~~y--~~Ai~~~~~aL  231 (372)
                      ...+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+ |...|++  ++|+.++++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------AELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            4678899999999999999999999999987654               5788999999 8899999  99999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +    .+|++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       109 ~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          109 A----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             H----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             H----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            8    8999999999999999999999999999999999999998

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.36  E-value=9.3e-13  Score=109.20  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeeccc-------------CCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYL-------------RKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYEL   95 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~-------------~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~   95 (372)
                      ++.||.|++||++++.+ |++||||+.             ... |++|.+|.+.++|||+.+|.+|++|++..|.|||+.
T Consensus         2 i~~gd~V~v~Y~g~~~d-G~~fdss~~~~a~~~g~~~~~~~~~-P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~   79 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLES-GDVFDTSIEEVAKEAGIYAPDREYE-PLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTT-SCCCEESCHHHHHHHTCCCSSCCCC-CEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             CCCCCEEEEEEEEEECC-CCEEEecchhhcccccccccccCCC-CEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHH
Confidence            67899999999999865 469999963             235 999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q psy8368          96 CFGALGC  102 (372)
Q Consensus        96 ~yg~~g~  102 (372)
                      +||..+.
T Consensus        80 aYG~~~~   86 (151)
T 1ix5_A           80 AYGNRNE   86 (151)
T ss_dssp             SSCSCCS
T ss_pred             HCCCCCc
Confidence            9998654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.35  E-value=1e-11  Score=108.40  Aligned_cols=76  Identities=13%  Similarity=0.003  Sum_probs=70.3

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      .|..++..|+|++|+..|.+++...|..               ..+++++|.+|..+|+|++|+.+++++++    ++|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~  120 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQEKDALRMYEKILQ----LEAD  120 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC
Confidence            9999999999999999999999997765               68899999999999999999999999998    9999


Q ss_pred             chhHHHHHHHHHHhc
Q psy8368         241 DVKLFFVWGKALIGL  255 (372)
Q Consensus       241 ~~ka~~r~a~a~~~l  255 (372)
                      ++.+++++|.+|..+
T Consensus       121 ~~~a~~~lg~~~~~~  135 (208)
T 3urz_A          121 NLAANIFLGNYYYLT  135 (208)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999998888887544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=3.7e-11  Score=104.11  Aligned_cols=137  Identities=17%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|+.++..|+|.+|+..|.+++..   .               ..+++++|.||.++|+|++|+.+++++++
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP---H---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---C---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC---C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45667889999999999999999999988521   1               46899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-------------cHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-------------VRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-------------~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                          ++|+++.+++++|.+|..+|++++|+.+|++++++.|++.             ....+...++.+....+++.+ .
T Consensus        66 ----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A  140 (213)
T 1hh8_A           66 ----RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK-A  140 (213)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH-H
T ss_pred             ----hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH-H
Confidence                8899999999999999999999999999999999888643             233678888888887776654 4


Q ss_pred             HHHHHhhccCCCC
Q psy8368         300 KARCMKMFSSSSS  312 (372)
Q Consensus       300 ~~~~~~~~~~~~~  312 (372)
                      ...+.+.+...+.
T Consensus       141 ~~~~~~al~~~p~  153 (213)
T 1hh8_A          141 EEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCcc
Confidence            5566666665554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.4e-11  Score=107.61  Aligned_cols=111  Identities=24%  Similarity=0.314  Sum_probs=68.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|.++|+|++|+.+++++++  
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--  201 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIE--  201 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence            3445556666666666666666666666654432               35566666666666666666666666665  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCccHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA------AKDSVRAEIDKEILK  287 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~------p~~~~~~~~~~~l~~  287 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++      |++.   .+...+.+
T Consensus       202 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~---~~~~~l~~  255 (258)
T 3uq3_A          202 --KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR---EIDQLYYK  255 (258)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH---HHHHHHHH
T ss_pred             --hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchH---HHHHHHHH
Confidence              566666666666666666666666666666666666      6555   55555443

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.32  E-value=3.6e-12  Score=109.72  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC  102 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~  102 (372)
                      ++.||.|+|+|++++.+ +++||||+.. . |++|.+|.+.++|+|+++|.+|++|++..|.|||+.+||..+.
T Consensus         3 i~~gd~V~v~Y~g~~~d-G~~fdss~~~-~-P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTED-GVLVDESPVS-A-PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETT-TEEEEECCTT-S-CCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             CCCCCEEEEEEEEEECC-CCEEEecCCC-C-CEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            67899999999999765 5699999754 5 9999999999999999999999999999999999999998653

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.32  E-value=1.3e-11  Score=119.77  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=89.5

Q ss_pred             CCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCC
Q psy8368          26 GENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR  105 (372)
Q Consensus        26 g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~  105 (372)
                      +..+..||.|++||+++. + |+.|+++.  .. |+.|.+|.|.++|||+.+|.||++|++..|.+|+..+||..+.   
T Consensus       155 ~~~~~~gD~V~i~y~g~~-d-G~~fd~~~--~~-~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l---  226 (432)
T 1w26_A          155 DGAVEAEDRVTIDFTGSV-D-GEEFEGGK--AS-DFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL---  226 (432)
T ss_dssp             SSCCCTTCEEEECEEEES-S-SCBCSSCC--CS-SEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT---
T ss_pred             CCCCCCCCEEEEEEEEee-C-CeEccCCC--cc-ceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC---
Confidence            345889999999999984 4 56899986  45 9999999999999999999999999999999999999997654   


Q ss_pred             CCCCCcEEEEEEEEeeecCccccccccccccccccCcc-CchhHHHHHHHH
Q psy8368         106 IPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQV-EEPAFAKVLKRA  155 (372)
Q Consensus       106 ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~  155 (372)
                        +|.+++|.|+|.++. .    ..++++.+.|.-... +..+.++.....
T Consensus       227 --ag~~~~F~V~v~~v~-~----~~lpeldDEfak~~~~~~~tleelk~~i  270 (432)
T 1w26_A          227 --KGKAAKFAINLKKVE-E----RELPELTAEFIKRFGVEDGSVEGLRAEV  270 (432)
T ss_dssp             --SSCEEEEEEECCEEC-C----EECCCCSHHHHTTTTCSSCCHHHHHHHH
T ss_pred             --CCceEEEEEEEEEEe-c----cCCCCcchHHHHHhCccCCCHHHHHHHH
Confidence              678999999999998 2    335555555542221 233444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.31  E-value=2.8e-11  Score=108.81  Aligned_cols=155  Identities=10%  Similarity=0.068  Sum_probs=113.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..+            ....+++++|.||+++|+|.+|+..++++++  
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--   80 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE------------WAADAQFYLARAYYQNKEYLLAASEYERFIQ--   80 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc------------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--
Confidence            67888999999999999999999999999865532            1146899999999999999999999999998  


Q ss_pred             ccCCCC---chhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATK---DVKLFFVWGKALIG--------LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARC  303 (372)
Q Consensus       235 ~~~~p~---~~ka~~r~a~a~~~--------l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  303 (372)
                        ..|+   ...+++++|.+|..        +|++++|+..|++++++.|++.   .+...+..+........ ......
T Consensus        81 --~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~~~~~~~~~-~~~~~l  154 (261)
T 3qky_A           81 --IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE---LVDDATQKIRELRAKLA-RKQYEA  154 (261)
T ss_dssp             --HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             --HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch---hHHHHHHHHHHHHHHHH-HHHHHH
Confidence              6564   56799999999999        9999999999999999999998   44433322222111111 111222


Q ss_pred             HhhccCCCCCCcchHHHhhhhhhccC
Q psy8368         304 MKMFSSSSSPSQHSNVVRIAYQEHEQ  329 (372)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (372)
                      ..++-..+....+...++.++...|.
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            23333334444555666666555554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.30  E-value=3.8e-11  Score=105.88  Aligned_cols=155  Identities=11%  Similarity=0.119  Sum_probs=114.3

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..+  .          ...+++++|.||+++|+|++|+..++++++  
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--   69 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--Y----------SQQVQLDLIYAYYKNADLPLAQAAIDRFIR--   69 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--T----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--H----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Confidence            45678899999999999999999999999866532  1          146889999999999999999999999998  


Q ss_pred             ccCCCCchh---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVK---LFFVWGKALIG------------------LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       235 ~~~~p~~~k---a~~r~a~a~~~------------------l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                        .+|++..   ++|++|.++..                  +|++++|+..|+++++..|++.....+...+..+...+.
T Consensus        70 --~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~  147 (225)
T 2yhc_A           70 --LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA  147 (225)
T ss_dssp             --HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred             --HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence              8888776   89999999986                  679999999999999999999833344444444433332


Q ss_pred             HHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhccC
Q psy8368         294 QYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQ  329 (372)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (372)
                      ...    .....++-..+....+...++.++...|.
T Consensus       148 ~~~----~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  179 (225)
T 2yhc_A          148 KYE----YSVAEYYTERGAWVAVVNRVEGMLRDYPD  179 (225)
T ss_dssp             HHH----HHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHH----HHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence            221    11122222233334566666666666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.30  E-value=6.8e-11  Score=93.29  Aligned_cols=119  Identities=18%  Similarity=0.271  Sum_probs=104.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..++..|++.+|+..|.+++...+..               ..++.++|.++...+++++|+..++++++   
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALE---   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHH---
Confidence            346678999999999999999999999875443               46788999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                       .+|.+..+++.+|.++...|++++|+..+.+++++.|.+.   .+...+..+....++..
T Consensus        64 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~  120 (136)
T 2fo7_A           64 -LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQGDYD  120 (136)
T ss_dssp             -HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHH
T ss_pred             -HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHccHH
Confidence             8899999999999999999999999999999999999998   88888877776655544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.30  E-value=3.5e-11  Score=104.26  Aligned_cols=103  Identities=15%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..               ..+++++|.+|..+|+|++|+.+++++++  
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~--   99 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALI--   99 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHH--
Confidence            4678899999999999999999999999987654               57899999999999999999999999998  


Q ss_pred             ccCCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         235 SHFATKDV----------------KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       235 ~~~~p~~~----------------ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                        ..|.+.                .+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus       100 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          100 --QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             --TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             --hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence              667666                9999999999999999999999999999999876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.29  E-value=1.1e-10  Score=102.49  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=111.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++.+|+..|.+++...+..               ..++.++|.+|..+|++++|+..++++++  
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~--  119 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSA---------------ATAYYGAGNVYVVKEMYKEAKDMFEKALR--  119 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------------hHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence            5677889999999999999999999999886543               57889999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                        .+|.+..+++.+|.+|..+|++++|+..++++++++|++.   .+...++.+....+++.++ ...+.+++.
T Consensus       120 --~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A-~~~~~~~~~  187 (243)
T 2q7f_A          120 --AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT---EARFQFGMCLANEGMLDEA-LSQFAAVTE  187 (243)
T ss_dssp             --HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCHHH-HHHHHHHHH
T ss_pred             --hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence              8899999999999999999999999999999999999998   8888888887776665443 334444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.29  E-value=1e-10  Score=104.83  Aligned_cols=113  Identities=15%  Similarity=0.002  Sum_probs=102.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|+|++|+.+++++++ 
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~-  105 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE-  105 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHh-
Confidence            46778899999999999999999999999986554               57899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                         ++|.+..+++.+|.+|..+|++++|+..|+++++++|++.   .....+..+
T Consensus       106 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~  154 (275)
T 1xnf_A          106 ---LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP---FRSLWLYLA  154 (275)
T ss_dssp             ---HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred             ---cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh---HHHHHHHHH
Confidence               8999999999999999999999999999999999999998   555444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.29  E-value=1.1e-10  Score=97.74  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=95.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++.+|+..|.+++...+..               ..++.++|.++...|++++|+.+++++++  
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--  104 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAE--  104 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence            4456677888888888888888888888775443               46778888888888888888888888887  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                        .+|.+..+++.+|.++..+|++++|+..+++++++.|++.   .+...++.+....+++.
T Consensus       105 --~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A          105 --ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG---KVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHH
T ss_pred             --cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHcCCHH
Confidence              7788888888888888888888888888888888888887   77777777776665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=1.2e-10  Score=107.99  Aligned_cols=124  Identities=19%  Similarity=0.243  Sum_probs=109.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ........|..++..|++.+|+..|.+++...+..+           .....++.++|.||.++|+|++|+..++++++ 
T Consensus       233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-  300 (359)
T 3ieg_A          233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQ-  300 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence            344556779999999999999999999999865421           12346788999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                         .+|+++.+++.+|.+|..+|++++|+..|+++++++|++.   .++..+..+...+++.
T Consensus       301 ---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          301 ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ---QIREGLEKAQRLLKQS  356 (359)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHHHHHH
T ss_pred             ---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHh
Confidence               8999999999999999999999999999999999999999   9999999998877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=1.4e-10  Score=104.32  Aligned_cols=142  Identities=6%  Similarity=0.063  Sum_probs=117.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH--------ccCHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN--------NKQYKLTCDC  226 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k--------l~~y~~Ai~~  226 (372)
                      ...+...|..++..|+|.+|+..|.+++...|..+  .          ...+++++|.||+.        +|++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~--~----------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP--R----------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--T----------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc--h----------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            67889999999999999999999999999876542  1          14679999999999        9999999999


Q ss_pred             HHHHHHhhccCCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         227 ASKALQFASHFATKDVKLF-----------------FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       227 ~~~aL~~~~~~~p~~~ka~-----------------~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      ++++++    ..|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++.....+...++.+.
T Consensus       120 ~~~~l~----~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  195 (261)
T 3qky_A          120 FQLFID----RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY  195 (261)
T ss_dssp             HHHHHH----HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHH----HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            999998    888877666                 99999999999999999999999999999764447888888887


Q ss_pred             HHH----------HHHHHHHHHHHHhhccCCCCC
Q psy8368         290 LGN----------QQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       290 ~~~----------~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      ..+          +++ ......|.++....+..
T Consensus       196 ~~~g~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          196 IAYAEQSVRARQPERY-RRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHTSCGGGHHHHH-HHHHHHHHHHHHHCTTC
T ss_pred             HHhcccchhhcccchH-HHHHHHHHHHHHHCCCC
Confidence            765          333 34456666666555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=4.5e-11  Score=117.76  Aligned_cols=122  Identities=12%  Similarity=0.004  Sum_probs=112.2

Q ss_pred             HHHHHhhHHHHhc---------cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc--------c
Q psy8368         156 QELGASGKNAFND---------KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN--------K  218 (372)
Q Consensus       156 ~~~k~~Gn~~~~~---------g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl--------~  218 (372)
                      ..+...|..++..         |+|++|+..|++|+.+.+..               ..+++++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHhhccccc
Confidence            5677889999999         99999999999999997665               57899999999999        9


Q ss_pred             CHHHHHHHHHHHHHhhccCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         219 QYKLTCDCASKALQFASHFAT---KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       219 ~y~~Ai~~~~~aL~~~~~~~p---~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      +|++|+.+++++++    ++|   +++.+|+++|.+|..+|++++|+..|++|++++|++.   .++..+..+...+++.
T Consensus       236 ~~~~A~~~~~~al~----~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          236 ISQQALSAYAQAEK----VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP---EPQQREQQLLEFLSRL  308 (474)
T ss_dssp             HHHHHHHHHHHHHH----HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHH
Confidence            99999999999998    899   9999999999999999999999999999999999999   9999999998888776


Q ss_pred             HHHH
Q psy8368         296 QKET  299 (372)
Q Consensus       296 ~~~~  299 (372)
                      .+..
T Consensus       309 ~eAi  312 (474)
T 4abn_A          309 TSLL  312 (474)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1e-10  Score=103.54  Aligned_cols=144  Identities=10%  Similarity=0.066  Sum_probs=115.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC-----hHHH------HHHHHHHHHHHHHHHHHHHHccCHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN-----YEDQ------MQLEEYLCRVYRNLMVCYNNNKQYKLT  223 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~~~~------~~~~~l~~~l~~Nla~~~~kl~~y~~A  223 (372)
                      +..+...|..++..|++.+|+..|.+++.+.+......     +...      .........++.++|.++..+|+|++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            67888999999999999999999999998643210000     0000      001122356899999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         224 CDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARC  303 (372)
Q Consensus       224 i~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  303 (372)
                      +.+++++++    .+|.+..+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++.++ ...+
T Consensus       159 ~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A-~~~~  230 (258)
T 3uq3_A          159 VKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYIRKATAQIAVKEYASA-LETL  230 (258)
T ss_dssp             HHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHH-HHHH
T ss_pred             HHHHHHHHh----cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHhhHHHH-HHHH
Confidence            999999998    8999999999999999999999999999999999999999   9999999888877766443 3344


Q ss_pred             Hhh
Q psy8368         304 MKM  306 (372)
Q Consensus       304 ~~~  306 (372)
                      .+.
T Consensus       231 ~~a  233 (258)
T 3uq3_A          231 DAA  233 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.27  E-value=7.4e-11  Score=118.53  Aligned_cols=133  Identities=10%  Similarity=-0.011  Sum_probs=117.4

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|++|+..|++++...+..               ..++.++|.+|..+|+|++|+.+++++++  
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~--   85 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASD--   85 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence            5678889999999999999999999999986654               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccCC
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN---QQYQKETKARCMKMFSSS  310 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~  310 (372)
                        ++|++..+++++|.+|..+|++++|+..|+++++++|++.   .+...+..+....   +++.+ ....+.+.+...
T Consensus        86 --~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~g~~~~-A~~~~~~al~~~  158 (568)
T 2vsy_A           86 --AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP---YITAQLLNWRRRLCDWRALDV-LSAQVRAAVAQG  158 (568)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCTTHHH-HHHHHHHHHHHT
T ss_pred             --cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhhccccHHH-HHHHHHHHHhcC
Confidence              8999999999999999999999999999999999999999   9999999998887   66543 344555544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=4.3e-12  Score=98.04  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=81.1

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|+.++..|+|.+|+..|.+++...+..               ..+++|+|.||.++|+|++|+.+|+++++ 
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-   66 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------PVGYSNKAMALIKLGEYTQAIQMCQQGLR-   66 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence            35678889999999999999999999999886654               57788999999999999999999999997 


Q ss_pred             hccCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368         234 ASHFATKD------VKLFFVWGKALIGLQEWTSAIKHLKT  267 (372)
Q Consensus       234 ~~~~~p~~------~ka~~r~a~a~~~l~~~e~A~~~~~~  267 (372)
                         ++|++      .++++++|.++..+|+++.|+..+++
T Consensus        67 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           67 ---YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             ---SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             ---hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence               88888      88999999999998888877766553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=6.5e-11  Score=99.05  Aligned_cols=133  Identities=13%  Similarity=0.054  Sum_probs=115.0

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|++.+|+..|.+++...+..               ..++.++|.++...|++++|+.+++++++ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-   70 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLA-   70 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence            46778889999999999999999999998875443               57889999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                         .+|.+..+++.+|.++...|++++|+..++++++++|.+.   .+...++.+....+++.+ ....+.+++..
T Consensus        71 ---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~-A~~~~~~~~~~  139 (186)
T 3as5_A           71 ---DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF---NVRFRLGVALDNLGRFDE-AIDSFKIALGL  139 (186)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHH-HHHHHHHHHHH
T ss_pred             ---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH---HHHHHHHHHHHHcCcHHH-HHHHHHHHHhc
Confidence               8899999999999999999999999999999999999999   888888888877766643 33444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.26  E-value=2.1e-11  Score=100.67  Aligned_cols=111  Identities=8%  Similarity=0.033  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc
Q psy8368         176 RRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL  255 (372)
Q Consensus       176 ~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l  255 (372)
                      ..|++++...+..               ...++++|.+++..|+|++|+..+++++.    .+|+++.+|+.+|.+|..+
T Consensus         8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~   68 (148)
T 2vgx_A            8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYDSRFFLGLGACRQAM   68 (148)
T ss_dssp             CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHH
Confidence            3466666665443               57889999999999999999999999998    9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         256 QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       256 ~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                      |++++|+.+|++++.++|++.   .+...++.+....++..++ ...|.+.+..
T Consensus        69 g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~g~~~~A-~~~~~~al~~  118 (148)
T 2vgx_A           69 GQYDLAIHSYSYGAVMDIXEP---RFPFHAAECLLQXGELAEA-ESGLFLAQEL  118 (148)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Confidence            999999999999999999999   9999999998888877543 3455554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.26  E-value=8.8e-11  Score=115.70  Aligned_cols=115  Identities=20%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             HHHHHHhhHHHHhccCH-HHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         155 AQELGASGKNAFNDKNI-VSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      +..+...|..++..|+| .+|+..|++|++..+..               ..+++++|.||.++|+|++|+.+++++++ 
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~-  165 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALT-  165 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence            56788999999999999 99999999999997665               57899999999999999999999999997 


Q ss_pred             hccCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGL---------QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l---------~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                         ++|+ ..+++++|.+|..+         |++++|+..|++|++++|++.   .++..++.+....
T Consensus       166 ---~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~  226 (474)
T 4abn_A          166 ---HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---RSWYILGNAYLSL  226 (474)
T ss_dssp             ---TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH
T ss_pred             ---hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH
Confidence               8898 79999999999999         999999999999999999999   9999999988777

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.25  E-value=1.4e-10  Score=110.00  Aligned_cols=147  Identities=15%  Similarity=0.059  Sum_probs=97.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------CChHHHHHHHH------HHHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------TNYEDQMQLEE------YLCRVYRNLMVCYN  215 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~------l~~~l~~Nla~~~~  215 (372)
                      +..+...|..+...|++.+|+..|++++...+....             ..++....+..      -...++.++|.+|.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            566777888888888888888888888776543210             00000000010      01456777788888


Q ss_pred             HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      ++|++++|+..++++++    .+|+++.+++.+|.+|..+|++++|+..|+++++++|++.   .+...+..+....++.
T Consensus       249 ~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA---DSLNNLANIKREQGNI  321 (388)
T ss_dssp             HTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCH
T ss_pred             HcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCH
Confidence            88888888888888876    7777777888888888888888888888888888888777   7777777776665555


Q ss_pred             HHHHHHHHHhhccC
Q psy8368         296 QKETKARCMKMFSS  309 (372)
Q Consensus       296 ~~~~~~~~~~~~~~  309 (372)
                      .+ ....+.+++..
T Consensus       322 ~~-A~~~~~~al~~  334 (388)
T 1w3b_A          322 EE-AVRLYRKALEV  334 (388)
T ss_dssp             HH-HHHHHHHHTTS
T ss_pred             HH-HHHHHHHHHhc
Confidence            43 33445554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.24  E-value=7e-11  Score=110.73  Aligned_cols=120  Identities=17%  Similarity=0.098  Sum_probs=82.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++.+|+..|.+++...+..               ..+++++|.+|.++|+|++|+.+++++++  
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--  279 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALE--  279 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            3455666777777777777777777777664433               45667777777777777777777777776  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----------ccHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-----------SVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~-----------~~~~~~~~~l~~~~~~~~~~~  296 (372)
                        ++|++..+++.+|.+|..+|++++|+..|+++++++|++           .   .++..+..+...+++..
T Consensus       280 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          280 --LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE---NIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH---HHHHHHHHHHHHHTCGG
T ss_pred             --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh---HHHHHHHHHHHHhCChH
Confidence              667777777777777777777777777777777777766           4   56666666665555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.24  E-value=1.7e-10  Score=109.50  Aligned_cols=113  Identities=16%  Similarity=0.057  Sum_probs=67.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++++|+..|++++...|..               ...+.++|.++.+.|++++|+..++++++  
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--  129 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF---------------IDGYINLAAALVAAGDMEGAVQAYVSALQ--  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            4567888999999999999999999998876543               33444555555555555555555555554  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                        .+|++..++..+|.++..+|++++|+..|.++++++|++.   .++..++.+.
T Consensus       130 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~  179 (388)
T 1w3b_A          130 --YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA---VAWSNLGCVF  179 (388)
T ss_dssp             --HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred             --hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Confidence              4455555555555555555555555555555555555544   4444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=3.5e-11  Score=123.90  Aligned_cols=132  Identities=8%  Similarity=-0.059  Sum_probs=116.5

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..++..|+|++|+..|++++...+..               ..+++++|.+|..+|+|++|+.+++++++   
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~---  495 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---------------WRLVWYRAVAELLTGDYDSATKHFTEVLD---  495 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence            467788999999999999999999999987665               67899999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                       ++|++..+++++|.+|..+|++++ +.+|++|++++|++.   .++..++.+....+++.+ ....|.+......
T Consensus       496 -l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~-A~~~~~~al~l~P  565 (681)
T 2pzi_A          496 -TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI---SAAFGLARARSAEGDRVG-AVRTLDEVPPTSR  565 (681)
T ss_dssp             -HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHH-HHHHHHTSCTTST
T ss_pred             -hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH---HHHHHHHHHHHHcCCHHH-HHHHHHhhcccCc
Confidence             999999999999999999999999 999999999999999   999999999888887754 3455565554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.23  E-value=9.5e-11  Score=110.18  Aligned_cols=121  Identities=12%  Similarity=0.066  Sum_probs=56.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..+...|++.+|+..|.+++...+...   +          ..+++++|.+|..+|+|++|+.+++++++  
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--  241 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI---D----------PDLQTGLGVLFHLSGEFNRAIDAFNAALT--  241 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSC---C----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc---C----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            44444555555555555555555555555533210   0          23455555555555555555555555554  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++
T Consensus       242 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          242 --VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI---RSRYNLGISCINLGAY  297 (365)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCC
T ss_pred             --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHCCCH
Confidence              4555555555555555555555555555555555555555   5555555554444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.22  E-value=2.3e-10  Score=106.12  Aligned_cols=110  Identities=13%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|+.++..|+|.+|+..|.+++...+..               ..++.++|.||..+|+|++|+.+++++++  
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--   65 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIA--   65 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence            5678899999999999999999999999986654               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCccHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA---KDSVRAEIDKEIL  286 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p---~~~~~~~~~~~l~  286 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|   ++.   .+...+.
T Consensus        66 --~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~  115 (359)
T 3ieg_A           66 --LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK---EAESQLV  115 (359)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH---HHHHHHH
T ss_pred             --hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH---HHHHHHH
Confidence              8999999999999999999999999999999999999   877   7776664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.21  E-value=3.5e-11  Score=101.51  Aligned_cols=130  Identities=11%  Similarity=0.093  Sum_probs=108.4

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK  240 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~  240 (372)
                      .++.++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|+|++|+.+++++++    ++|+
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~   76 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGE   76 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCS
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC
Confidence            4455678899999999999999986654               57899999999999999999999999998    8899


Q ss_pred             chhHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368         241 DVKLFFVWGKA-LIGLQEW--TSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       241 ~~ka~~r~a~a-~~~l~~~--e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      +..+++.+|.+ |...|++  ++|+..|+++++++|++.   .+...++.+....+++.+ ....+.+++...+..
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI---TALMLLASDAFMQANYAQ-AIELWQKVMDLNSPR  148 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHH-HHHHHHHHHHTCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcccHHH-HHHHHHHHHhhCCCC
Confidence            99999999999 8899999  999999999999999999   999999999888877654 445666666655544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.21  E-value=1.9e-10  Score=101.05  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=112.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++.+|+..|.+++...+..               ..++.++|.+|.++|++++|+..++++++  
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--  153 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---------------GDLFYMLGTVLVKLEQPKLALPYLQRAVE--  153 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence            4667789999999999999999999999986544               46789999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                        .+|.+..+++.+|.++..+|++++|+..|+++++++|++.   .+...++.+....++..+ ....+.+++.
T Consensus       154 --~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~-A~~~~~~~~~  221 (243)
T 2q7f_A          154 --LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA---DAFYNAGVTYAYKENREK-ALEMLDKAID  221 (243)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCTTH-HHHHHHHHHH
T ss_pred             --hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHccCHHH-HHHHHHHHHc
Confidence              8899999999999999999999999999999999999999   888888888776655543 3344444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.21  E-value=9.7e-11  Score=93.98  Aligned_cols=89  Identities=8%  Similarity=0.082  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VRA  279 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~~  279 (372)
                      +..+.|+|.++++.|+|++|+.+|++||+    ++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++.    ..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            56788999999999999999999999998    9999999999999999999999999999999999999875    122


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy8368         280 EIDKEILKADLGNQQYQ  296 (372)
Q Consensus       280 ~~~~~l~~~~~~~~~~~  296 (372)
                      .+...++.+...++++.
T Consensus        84 ~~~~~lg~~~~~~~~~~  100 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLS  100 (127)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCCHH
Confidence            34444555555444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.20  E-value=9.7e-11  Score=110.11  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=96.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|++.+|+..|.+++...+..               ..+++++|.+|.++|+|++|+.+++++++ 
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~-  275 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALE-  275 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence            35678889999999999999999999999987654               57899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                         ++|++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       276 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  315 (365)
T 4eqf_A          276 ---IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR  315 (365)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred             ---cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence               8999999999999999999999999999999999999876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.20  E-value=2.2e-10  Score=89.55  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHH
Q psy8368         173 SAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKAL  252 (372)
Q Consensus       173 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~  252 (372)
                      .|+..|.+++...+..               ..+++++|.+|+.+|+|++|+.+++++++    ++|++..+++.+|.+|
T Consensus         3 ~a~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~   63 (115)
T 2kat_A            3 AITERLEAMLAQGTDN---------------MLLRFTLGKTYAEHEQFDAALPHLRAALD----FDPTYSVAWKWLGKTL   63 (115)
T ss_dssp             CHHHHHHHHHTTTCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHH
Confidence            5788899999876554               57899999999999999999999999998    8999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         253 IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       253 ~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      ..+|++++|+..|+++++++|.+.. ......+..+...+.
T Consensus        64 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           64 QGQGDRAGARQAWESGLAAAQSRGD-QQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHhc
Confidence            9999999999999999999985430 044444444444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.20  E-value=2.2e-10  Score=112.05  Aligned_cols=106  Identities=24%  Similarity=0.281  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      ..+.+..++..|+.+++.|+|.+|+..|++++...+.                ..++.++|.||+++|+|++|+.+++++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            3577899999999999999999999999999998642                478999999999999999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++    .+|++..+++.+|.+|..+|++++|+..|.++++++|.+.
T Consensus        66 l~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           66 LE----LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             hc----cChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            98    8999999999999999999999999999999999999765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.20  E-value=2.9e-10  Score=101.93  Aligned_cols=103  Identities=10%  Similarity=0.041  Sum_probs=48.5

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      +...|..++..|+|.+|+..|.+++. .+..+..           ...++.++|.+|..+|+|++|+.+++++++    .
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~  103 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-----------KSADFEYYGKILMKKGQDSLAIQQYQAAVD----R  103 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHh----c
Confidence            44444455555555555555555554 2211100           023344455555555555555555555554    4


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +|.+..+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A          104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            444444555555555555555555555555555555444

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.20  E-value=3.2e-11  Score=100.44  Aligned_cols=65  Identities=20%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG  101 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g  101 (372)
                      ++.||.|+++|+++ .+ |++|||++      ++|.+|.+.++|||+.+|.+|++|++..|.|||+.+||..+
T Consensus         3 i~~gd~V~v~Y~g~-~d-G~~fdss~------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VE-GEVLDQGE------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ET-TEEEEEEE------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC
T ss_pred             CCCCCEEEEEEEEE-EC-CEEEEeeE------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC
Confidence            57899999999999 55 56999984      78999999999999999999999999999999999999865

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.20  E-value=1.6e-10  Score=103.67  Aligned_cols=133  Identities=17%  Similarity=0.136  Sum_probs=110.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..++..|+|++|+..|.+++...+..               ..++.++|.||..+|+|++|+.+++++++ ..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~   67 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---------------PYIYNRRAVCYYELAKYDLAQKDIETYFS-KV   67 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC---------------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc
Confidence            346678999999999999999999999986654               35788999999999999999999999996 11


Q ss_pred             cCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         236 HFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       236 ~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                       .++. ...+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++.++ ...+.+.+..
T Consensus        68 -~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A-~~~~~~al~~  137 (272)
T 3u4t_A           68 -NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---DMYGQIGSYFYNKGNFPLA-IQYMEKQIRP  137 (272)
T ss_dssp             -CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHH-HHHHGGGCCS
T ss_pred             -CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHccCHHHH-HHHHHHHhhc
Confidence             2222 355799999999999999999999999999999999   9999999999888877543 4455555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.19  E-value=4.6e-10  Score=97.09  Aligned_cols=120  Identities=13%  Similarity=-0.034  Sum_probs=69.2

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhhc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN-KQYKLTCDCASKALQFAS  235 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl-~~y~~Ai~~~~~aL~~~~  235 (372)
                      .+...|..++..|++.+|+..|.+++...+..               ..++.++|.+|..+ |++++|+..++++++  .
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~  106 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---------------AEINNNYGWFLCGRLNRPAESMAYFDKALA--D  106 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--S
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--C
Confidence            34444455555555555555555555443322               34556666666666 666666666666663  1


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      ..+|.+..+++.+|.++..+|++++|+..|.++++.+|++.   .+...++.+....+++.
T Consensus       107 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A          107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP---PAFKELARTKMLAGQLG  164 (225)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHTCHH
T ss_pred             cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHcCCHH
Confidence            13344566666666666666666666666666666666666   66666666655555443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.18  E-value=2e-11  Score=125.74  Aligned_cols=114  Identities=7%  Similarity=-0.057  Sum_probs=105.3

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|+|++|+..|++|+++.+..               ..+++|+|.||.++|+|++ +.+|+++++  
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------------~~~~~~lg~~~~~~g~~~~-~~~~~~al~--  528 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---------------LAPKLALAATAELAGNTDE-HKFYQTVWS--  528 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------SHHHHHHHHHHHHHTCCCT-TCHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCChHH-HHHHHHHHH--
Confidence            4567789999999999999999999999997765               5789999999999999999 999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                        ++|++..+++++|.+|..+|++++|+.+|++|++++|++.   .++..++.+...
T Consensus       529 --~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~a~~~~~~~~~~  580 (681)
T 2pzi_A          529 --TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT---TARLTSAVTLLS  580 (681)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH---HHHHHHHHHTC-
T ss_pred             --hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH---HHHHHHHHHHHc
Confidence              9999999999999999999999999999999999999999   888888887643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.17  E-value=5.5e-10  Score=107.64  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=107.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      .......|..++..|++.+|+..|.+++...+..+           .....++.++|.++.++|++++|+.+++++++  
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--  323 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--  323 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            34456669999999999999999999999754421           12246899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                        ++|++..+++.+|.+|..+|++++|+.+|+++++++|++.   .+...+..+....+.
T Consensus       324 --~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          324 --MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ---QIREGLEKAQRLLKQ  378 (450)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH---HHHHHHHHHHHHHHH
T ss_pred             --hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH---HHHHHHHHHHHHhhc
Confidence              8999999999999999999999999999999999999999   999999888776554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.17  E-value=6.8e-10  Score=98.40  Aligned_cols=135  Identities=14%  Similarity=0.105  Sum_probs=97.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++.+|+..|.+++...+..               ..++.++|.+|..+|++++|+.+++++++  
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--  133 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ--  133 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh--
Confidence            3455666777777777777777777777664432               46778888888888888888888888874  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                      ...+|.+..+++.+|.+|..+|++++|+..|+++++++|.+.   .+...++.+....+++.+ ....+.+++...
T Consensus       134 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~  205 (252)
T 2ho1_A          134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP---SVALEMADLLYKEREYVP-ARQYYDLFAQGG  205 (252)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHTTCHHH-HHHHHHHHHTTS
T ss_pred             CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC
Confidence            114677788888888888888888888888888888888888   788888877777666543 334555555433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.17  E-value=3.3e-10  Score=103.96  Aligned_cols=122  Identities=9%  Similarity=-0.068  Sum_probs=95.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++.+|+..|++++...|..               ..++.++|.+|+.+|++++|+..+++++...
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---------------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---------------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            4678899999999999999999999999997765               5678888888888888888776666553200


Q ss_pred             ------------------------------ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--ccHHHHH
Q psy8368         235 ------------------------------SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD--SVRAEID  282 (372)
Q Consensus       235 ------------------------------~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~--~~~~~~~  282 (372)
                                                    -..+|++..+++.+|.+|...|++++|+..|.++++++|++  .   .++
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~---~a~  258 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG---QTR  258 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG---HHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc---hHH
Confidence                                          01578888888888888888888888888888888888887  6   677


Q ss_pred             HHHHHHHHHHHH
Q psy8368         283 KEILKADLGNQQ  294 (372)
Q Consensus       283 ~~l~~~~~~~~~  294 (372)
                      ..+..+...++.
T Consensus       259 ~~l~~~~~~~g~  270 (287)
T 3qou_A          259 XTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCC
Confidence            777777665544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.17  E-value=4.3e-10  Score=103.53  Aligned_cols=135  Identities=7%  Similarity=-0.001  Sum_probs=99.3

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHH----HHccCHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCY----NNNKQYKLTCDCASKA  230 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~----~kl~~y~~Ai~~~~~a  230 (372)
                      ...+...|..+.+.|++++|+..|++++...+..                 ...+++.++    ...|++++|+..++++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----------------TLTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----------------HHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3456667778888888888888888887764322                 122333332    3348899999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                      ++    .+|+++.+++.+|.++..+|++++|+..|+++++++|+++   .+...+..+....++..+.....+.++....
T Consensus       193 l~----~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~---~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          193 AD----KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP---ETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HH----HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            87    7888999999999999999999999999999999999998   8888888777776665554555555555444


Q ss_pred             CCC
Q psy8368         311 SSP  313 (372)
Q Consensus       311 ~~~  313 (372)
                      +..
T Consensus       266 P~~  268 (291)
T 3mkr_A          266 RSH  268 (291)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.17  E-value=4.4e-10  Score=103.01  Aligned_cols=121  Identities=17%  Similarity=0.092  Sum_probs=108.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++++|+..|.+++...+..               ..++.++|.+|..+|++++|+..++++++  
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--  234 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALD--  234 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            4667889999999999999999999999986554               56889999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC------------CccHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK------------DSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~------------~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|+            +.   .+...+..+....++...
T Consensus       235 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          235 --INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR---SMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH---HHHHHHHHHHHHTTCHHH
T ss_pred             --cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH---HHHHHHHHHHHhcCCHHH
Confidence              88999999999999999999999999999999999999            56   788888888777666544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=1.2e-10  Score=94.96  Aligned_cols=96  Identities=7%  Similarity=0.016  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...++++|.++++.|+|++|+..+++++.    .+|+++.+|+.+|.+|..+|++++|+.+|++++.++|++.   .+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~   90 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP---RFPF   90 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHH
Confidence            56788999999999999999999999998    9999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         284 EILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                      .++.+....+++.++. ..|.+.+
T Consensus        91 ~lg~~~~~~g~~~~A~-~~~~~al  113 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAE-SGFYSAR  113 (142)
T ss_dssp             HHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHH-HHHHHHH
Confidence            9999988887765433 3444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.16  E-value=9e-10  Score=95.23  Aligned_cols=122  Identities=11%  Similarity=-0.017  Sum_probs=94.9

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|++.+|+..|.+++...+..               ..++.++|.+|..+|++++|+..++++++ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-   70 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---------------ELAWLVRAEIYQYLKVNDKAQESFRQALS-   70 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Confidence            45667778888888888888888888888876543               46778888888888888888888888887 


Q ss_pred             hccCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGL-QEWTSAIKHLKTARK--LAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l-~~~e~A~~~~~~al~--l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                         .+|.+..+++.+|.+|..+ |++++|+..|+++++  .+|.+.   .+...++.+....+++.+
T Consensus        71 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~  131 (225)
T 2vq2_A           71 ---IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY---IANLNKGICSAKQGQFGL  131 (225)
T ss_dssp             ---HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH---HHHHHHHHHHHHTTCHHH
T ss_pred             ---hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchH---HHHHHHHHHHHHcCCHHH
Confidence               7788888888888888888 888888888888888  445545   677777776666555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=3e-10  Score=104.31  Aligned_cols=148  Identities=12%  Similarity=0.014  Sum_probs=108.7

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN-KQYKLTCDCASKALQ  232 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl-~~y~~Ai~~~~~aL~  232 (372)
                      .+..+.+.|+.+...|+|++|+.+|.+|+.+.+.....         .....++.|+|.+|... |+|++|+.++++|++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            36788889999999999999999999999887543210         11256899999999995 999999999999998


Q ss_pred             hhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         233 FASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSV----RAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       233 ~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      +.+..+..  ...++.++|.+|..+|+|++|+.+|++++++.|++..    ...+...+..+....+++. .....|.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~a  225 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV-AAARTLQEG  225 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH-HHHHHHHGG
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Confidence            43322111  1567999999999999999999999999999998761    1124455666666665553 344456665


Q ss_pred             ccCCC
Q psy8368         307 FSSSS  311 (372)
Q Consensus       307 ~~~~~  311 (372)
                      ....+
T Consensus       226 l~l~p  230 (292)
T 1qqe_A          226 QSEDP  230 (292)
T ss_dssp             GCC--
T ss_pred             HhhCC
Confidence            55443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.16  E-value=8.2e-10  Score=101.33  Aligned_cols=154  Identities=14%  Similarity=0.043  Sum_probs=110.7

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC------------C-hHHHHHHHHH------HHHHHHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT------------N-YEDQMQLEEY------LCRVYRNLMVCYNN  216 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~~~~~~~~~l------~~~l~~Nla~~~~k  216 (372)
                      ..+...|..++..|++.+|+..|.+++...+.....            . +.....+...      ...++.++|.+|..
T Consensus       126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            445566666666666666666666666654332100            0 0000111111      14688999999999


Q ss_pred             ccCHHHHHHHHHHHHHhhccCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         217 NKQYKLTCDCASKALQFASHFA-----TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       217 l~~y~~Ai~~~~~aL~~~~~~~-----p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +|+|++|+.+++++++..+...     |.+..+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+...
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~  282 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA---STYSAIGYIHSL  282 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS---HHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch---HHHHHHHHHHHH
Confidence            9999999999999998432211     66788999999999999999999999999999999999   999999999888


Q ss_pred             HHHHHHHHHHHHHhhccCCCCC
Q psy8368         292 NQQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      .+++. .....+.+.+...+..
T Consensus       283 ~g~~~-~A~~~~~~al~~~p~~  303 (330)
T 3hym_B          283 MGNFE-NAVDYFHTALGLRRDD  303 (330)
T ss_dssp             HTCHH-HHHHHHHTTTTTCSCC
T ss_pred             hccHH-HHHHHHHHHHccCCCc
Confidence            87765 4456677776655543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.16  E-value=7.2e-10  Score=87.25  Aligned_cols=102  Identities=19%  Similarity=0.308  Sum_probs=92.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|++.+|+..|.+++...+..               ..++.++|.++...|++++|+..++++++  
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--   97 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALE--   97 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH--
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH--
Confidence            3456778999999999999999999999876543               46788999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                        ..|.+..+++.+|.+|..+|++++|+..|.+++.++|++
T Consensus        98 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           98 --LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             --hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence              889999999999999999999999999999999999864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.16  E-value=5.6e-10  Score=88.73  Aligned_cols=96  Identities=13%  Similarity=-0.027  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                      .++++|.++++.|+|.+|+..++++++    .+|+++.+|+.+|.++..+|++++|+..|++|++++|++.   .++..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~l   91 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAAL   91 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Confidence            467899999999999999999999998    9999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         286 LKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                      +.+....+++.++ ...+.+.+..
T Consensus        92 a~~~~~~g~~~~A-~~~~~~al~~  114 (121)
T 1hxi_A           92 AVSHTNEHNANAA-LASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHC-
T ss_pred             HHHHHHcCCHHHH-HHHHHHHHHh
Confidence            9999888877543 3455555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.15  E-value=4.3e-10  Score=89.26  Aligned_cols=95  Identities=13%  Similarity=0.051  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.++|.++++.|+|++|+..++++++    ++|+++.+++++|.+|..+|++++|+.+|+++++++|++.   .+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~   76 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---RAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHH
Confidence            56788999999999999999999999998    8999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         284 EILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      .++.+....+++.++ ...+.+.
T Consensus        77 ~lg~~~~~~~~~~~A-~~~~~~a   98 (126)
T 3upv_A           77 RKATAQIAVKEYASA-LETLDAA   98 (126)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHhCHHHH-HHHHHHH
Confidence            999998887776543 3334443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.15  E-value=3.4e-10  Score=100.34  Aligned_cols=123  Identities=16%  Similarity=0.163  Sum_probs=110.1

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|++++|+..++++++
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~   99 (252)
T 2ho1_A           35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------------ADAHAALAVVFQTEMEPKLADEEYRKALA   99 (252)
T ss_dssp             HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            347889999999999999999999999999986544               57899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK--LAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~--l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                          .+|.+..+++.+|.+|..+|++++|+..|++++.  ..|.+.   .+...++.+....++..+
T Consensus       100 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~  159 (252)
T 2ho1_A          100 ----SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS---RVFENLGLVSLQMKKPAQ  159 (252)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH---HHHHHHHHHHHHTTCHHH
T ss_pred             ----HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH---HHHHHHHHHHHHcCCHHH
Confidence                8899999999999999999999999999999999  778777   888888887776665543

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.14  E-value=6.7e-11  Score=113.24  Aligned_cols=97  Identities=14%  Similarity=0.245  Sum_probs=80.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP  107 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip  107 (372)
                      .+..||.|++||+++. + |+.|+++.  .. |+.|.+|.|.++|||+.+|.||++|++..|.+++...|+..+.     
T Consensus       160 ~~~~gD~V~i~y~g~~-d-G~~fd~~~--~~-~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----  229 (392)
T 1t11_A          160 AAENGKRVSIDFVGSI-D-GVEFEGGK--AE-NFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----  229 (392)
T ss_dssp             CCCTTCEEEEEEEEES-S-SSCCTTCE--EE-EEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----
T ss_pred             CCCCCCEEEEEEEEEE-C-CEEccCCC--cc-ceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----
Confidence            4889999999999984 4 55899873  34 8999999999999999999999999999999986667776543     


Q ss_pred             CCCcEEEEEEEEeeecCccccccccccccccc
Q psy8368         108 AKADLLFEVHLINFSIDPQVVRSSADIESDFI  139 (372)
Q Consensus       108 ~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~  139 (372)
                      +|.+++|.|+|.++. .    ..++++.+.|.
T Consensus       230 aGk~~~F~V~v~~i~-~----~~lpeldDEfa  256 (392)
T 1t11_A          230 KGKAAKFAIKVNKVE-A----RELPELNDEFV  256 (392)
T ss_dssp             SSCEEEECCCEEEEE-E----EECCCCSTGGG
T ss_pred             CCCeEEEEEEEEEEE-c----CCCCCcCHHHH
Confidence            688999999999998 2    34555555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.14  E-value=3.5e-10  Score=101.19  Aligned_cols=136  Identities=14%  Similarity=0.086  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|.+|+..|.+++.........+.       .....++.++|.+|..+|+|++|+.++.++++
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH-------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc-------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            35677889999999999999999999999998643211111       12367899999999999999999999999998


Q ss_pred             hhccC----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------cCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHF----ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL--------AAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       233 ~~~~~----~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l--------~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      +....    +|....+++++|.+|..+|++++|+..|++++++        +|...   .+...++.+....+++.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A  188 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA---KTKNNLASCYLKQGKYQDA  188 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH---HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHHHcCCHHHH
Confidence            43221    5778899999999999999999999999999999        55555   7888888888777766543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.14  E-value=1.1e-09  Score=96.41  Aligned_cols=137  Identities=7%  Similarity=-0.069  Sum_probs=110.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH------------------
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN------------------  216 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k------------------  216 (372)
                      ...+...|..+++.|+|.+|+..|.++++..|..+.            ...+++++|.|+.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            357888999999999999999999999998766421            02356777777775                  


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368         217 NKQYKLTCDCASKALQFASHFATKDVKLF-----------------FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA  279 (372)
Q Consensus       217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~-----------------~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~  279 (372)
                      +|++++|+..++++++    ..|++..++                 +.+|.+|...|++++|+..|+++++..|+++...
T Consensus       109 ~~~~~~A~~~~~~~l~----~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  184 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVR----GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATR  184 (225)
T ss_dssp             CHHHHHHHHHHHHHHT----TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             cHHHHHHHHHHHHHHH----HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccH
Confidence            6799999999999997    889987665                 6789999999999999999999999999987445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         280 EIDKEILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      .+...++.+...++...++ ...++.+..
T Consensus       185 ~a~~~l~~~~~~~g~~~~A-~~~~~~l~~  212 (225)
T 2yhc_A          185 DALPLMENAYRQMQMNAQA-EKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHH-HHHHHHHHh
Confidence            6788888888877776554 344444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=6.2e-10  Score=94.08  Aligned_cols=119  Identities=12%  Similarity=0.018  Sum_probs=80.8

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc-
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS-  235 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~-  235 (372)
                      .+...|..++..|++.+|+..|++++...|..               ..++.++|.+|..+|++++|+..+++++...+ 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   72 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR---------------GDVKLAKADCLLETKQFELAQELLATIPLEYQD   72 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC
Confidence            45667888888999999999999999887665               56778888888888888888777666554100 


Q ss_pred             -----------------------------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--ccHHHHHHH
Q psy8368         236 -----------------------------HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD--SVRAEIDKE  284 (372)
Q Consensus       236 -----------------------------~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~--~~~~~~~~~  284 (372)
                                                   ..+|+++.+++.+|.++..+|++++|+..|+++++++|++  .   .++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~a~~~  149 (176)
T 2r5s_A           73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDG---EVKKT  149 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTT---HHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChH---HHHHH
Confidence                                         1356666666666666666666666666666666666654  3   35555


Q ss_pred             HHHHHHHHH
Q psy8368         285 ILKADLGNQ  293 (372)
Q Consensus       285 l~~~~~~~~  293 (372)
                      +..+....+
T Consensus       150 l~~~~~~~g  158 (176)
T 2r5s_A          150 FMDILSALG  158 (176)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            555544443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.13  E-value=2.6e-09  Score=105.42  Aligned_cols=148  Identities=6%  Similarity=0.025  Sum_probs=119.7

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy8368         146 PAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD  225 (372)
Q Consensus       146 ~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~  225 (372)
                      ..+.+++..+....+.+..+..+|+|++|+..|.++|......-.++..       ..+..++|+|.+|..+|+|++|+.
T Consensus       300 e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp-------~~a~~~~nLa~~y~~~g~~~eA~~  372 (490)
T 3n71_A          300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL-------YVLRLLSIASEVLSYLQAYEEASH  372 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH-------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3445667778888889999999999999999999999987654333221       236889999999999999999999


Q ss_pred             HHHHHHHhhc-cCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         226 CASKALQFAS-HFAT---KDVKLFFVWGKALIGLQEWTSAIKHLKTARKL-----AAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       226 ~~~~aL~~~~-~~~p---~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-----~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      +++++|.+.. .+.|   +-..++.++|.+|..+|+|++|+..|++|+++     -|+++..+++...+..++..++.++
T Consensus       373 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          373 YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999997653 2344   45668999999999999999999999999975     4788766677778888888888776


Q ss_pred             HHHH
Q psy8368         297 KETK  300 (372)
Q Consensus       297 ~~~~  300 (372)
                      +++.
T Consensus       453 ~ae~  456 (490)
T 3n71_A          453 QNEF  456 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=3e-10  Score=104.38  Aligned_cols=146  Identities=14%  Similarity=0.113  Sum_probs=110.1

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.+..+...|+.+...|+|++|+..|.+|+.+......+         .....+++|+|.+|.++|+|++|+.++++|++
T Consensus        35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~  105 (292)
T 1qqe_A           35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345566777889999999999999999999987543211         11257899999999999999999999999998


Q ss_pred             hhccCCCC--chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         233 FASHFATK--DVKLFFVWGKALIGL-QEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       233 ~~~~~~p~--~~ka~~r~a~a~~~l-~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      +.......  -..++.++|.+|..+ |++++|+.+|++|+++.|.+.   ....+...++.+....+++.++. ..|.+.
T Consensus       106 l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~a  184 (292)
T 1qqe_A          106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-DIYSKL  184 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHH
Confidence            54322111  256899999999995 999999999999999998652   11256777787777777665443 344444


Q ss_pred             cc
Q psy8368         307 FS  308 (372)
Q Consensus       307 ~~  308 (372)
                      ..
T Consensus       185 l~  186 (292)
T 1qqe_A          185 IK  186 (292)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.13  E-value=1.1e-09  Score=102.38  Aligned_cols=144  Identities=16%  Similarity=0.065  Sum_probs=109.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh----------------------------HHHHHHHHH----
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY----------------------------EDQMQLEEY----  202 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------------------------~~~~~~~~l----  202 (372)
                      ...+...|..+...|++.+|+..|.+++...+.......                            .....+...    
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  211 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  211 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence            345666777777788888888888877776544321110                            000000110    


Q ss_pred             ----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccH
Q psy8368         203 ----LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVR  278 (372)
Q Consensus       203 ----~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~  278 (372)
                          ...++.++|.+|.++|+|++|+.+++++++    ++|++..+++.+|.+|..+|++++|+..|+++++++|++.  
T Consensus       212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--  285 (368)
T 1fch_A          212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI--  285 (368)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--
Confidence                256789999999999999999999999998    8999999999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         279 AEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       279 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                       .+...++.+....+++.++ ...+.++
T Consensus       286 -~~~~~l~~~~~~~g~~~~A-~~~~~~a  311 (368)
T 1fch_A          286 -RSRYNLGISCINLGAHREA-VEHFLEA  311 (368)
T ss_dssp             -HHHHHHHHHHHHHTCHHHH-HHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCHHHH-HHHHHHH
Confidence             9999999988887776543 3344443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.12  E-value=2.2e-09  Score=103.36  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..+++.|+|.+|+..|.+++...+..               ..+++++|.||..+|+|++|+.+++++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            457788999999999999999999999999886554               67899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                          .+|++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus        89 ----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           89 ----LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             ----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence                8999999999999999999999999999999999999875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.12  E-value=6.9e-10  Score=101.84  Aligned_cols=121  Identities=12%  Similarity=-0.022  Sum_probs=97.9

Q ss_pred             HHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         156 QELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ..+...|..++..| ++++|+..|.+++...+..               ..++.++|.+|..+|+|++|+..++++++  
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--  153 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY---------------GPAWIAYGHSFAVESEHDQAMAAYFTAAQ--  153 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC---------------THHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence            45667778888888 7888888888888775543               45688888889899999999999998887  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                        ..|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++.++
T Consensus       154 --~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~~~~~~A  212 (330)
T 3hym_B          154 --LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP---FVMHEVGVVAFQNGEWKTA  212 (330)
T ss_dssp             --HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHHTTCHHHH
T ss_pred             --hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcccHHHH
Confidence              7888888888899999999999999999999999988888   8888888877766665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.11  E-value=5.9e-10  Score=85.75  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      ...+.++|.+++..|+|++|+..++++++    ++|+++.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            46788999999999999999999999998    899999999999999999999999999999999999998

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.10  E-value=2.9e-10  Score=112.05  Aligned_cols=108  Identities=23%  Similarity=0.301  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy8368         149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCAS  228 (372)
Q Consensus       149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~  228 (372)
                      .+....+..+...|+.+++.|+|.+|+..|++++...+..               ..+++++|.||.++|+|++|+..|+
T Consensus        19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~   83 (537)
T 3fp2_A           19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEKVIEFTT   83 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456789999999999999999999999999999987655               6889999999999999999999999


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++++    ++|+++.+++.+|.+|..+|++++|+..|+ ++.++|+..
T Consensus        84 ~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A           84 KALE----IKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             HHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred             HHHh----cCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            9998    899999999999999999999999999995 999988765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=1.1e-09  Score=81.12  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.++|.++...++|++|+.+++++++    .+|++..+++++|.+|..+|++++|+..|+++++++|++.   .+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~   81 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH---HHHH
Confidence            56789999999999999999999999998    8999999999999999999999999999999999999999   8888


Q ss_pred             HHHHHHHH
Q psy8368         284 EILKADLG  291 (372)
Q Consensus       284 ~l~~~~~~  291 (372)
                      .++.+...
T Consensus        82 ~l~~~~~~   89 (91)
T 1na3_A           82 NLGNAKQK   89 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88777543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=1.4e-09  Score=105.59  Aligned_cols=128  Identities=13%  Similarity=0.014  Sum_probs=101.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|++|+..|++|+++.+.......      ..-....+.|+|.+|..+|+|++|+.++++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            556788999999999999999999999998754321000      00115689999999999999999999999999864


Q ss_pred             cc----CCCCchhHHHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         235 SH----FATKDVKLFFVWGKALIGL--QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       235 ~~----~~p~~~ka~~r~a~a~~~l--~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +.    ..+..+.++..+|.++..+  ++|++|+.+|++|++++|+++   .+...+..+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~---~~~~~~~~~~~~  184 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP---EFTSGLAIASYR  184 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Confidence            32    2445678899999887665  579999999999999999999   888777766443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.09  E-value=5.1e-10  Score=93.09  Aligned_cols=88  Identities=13%  Similarity=0.047  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-------chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-------DVK-----LFFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-------~~k-----a~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      ...+.|+|.+++++|+|++|+..|++||+    ++|+       +..     +|+++|.|+..+|+|++|+.+|.+|+++
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            56789999999999999999999999998    7777       444     9999999999999999999999999999


Q ss_pred             -------cCCCccHHHHH----HHHHHHHHHHHHHHHH
Q psy8368         272 -------AAKDSVRAEID----KEILKADLGNQQYQKE  298 (372)
Q Consensus       272 -------~p~~~~~~~~~----~~l~~~~~~~~~~~~~  298 (372)
                             +|++.   .++    ...+.+...++++.++
T Consensus        87 ~n~~~e~~pd~~---~A~~~~~~~rG~aL~~lgr~eEA  121 (159)
T 2hr2_A           87 FNRRGELNQDEG---KLWISAVYSRALALDGLGRGAEA  121 (159)
T ss_dssp             HHHHCCTTSTHH---HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhccccCCCchH---HHHHHHHHhHHHHHHHCCCHHHH
Confidence                   99999   888    8888888887777543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.09  E-value=1e-09  Score=91.46  Aligned_cols=102  Identities=15%  Similarity=0.060  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.++|.++++.|+|++|+.+++++++    ++|++..+|+++|.+|..+|+|++|+.+|+++++++|++.   .++.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~   83 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS---KAWS   83 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHH
Confidence            57889999999999999999999999998    8999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      .++.+....+++.++ ...|.+.+......
T Consensus        84 ~lg~~~~~~g~~~~A-~~~~~~al~~~p~~  112 (164)
T 3sz7_A           84 RLGLARFDMADYKGA-KEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHHHHHHHSSS
T ss_pred             HHHHHHHHccCHHHH-HHHHHHHHHhCCCc
Confidence            999999988887644 45566655544443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.09  E-value=8.7e-10  Score=98.66  Aligned_cols=128  Identities=11%  Similarity=0.009  Sum_probs=106.6

Q ss_pred             HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhH
Q psy8368         165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL  244 (372)
Q Consensus       165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka  244 (372)
                      +...|+|++|+..|.+++...+..    +       .....++.++|.+|..+|+|++|+.+++++++    .+|++..+
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~----~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~~~~   79 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALT----D-------DERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDMPEV   79 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCC----H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHH
T ss_pred             cCccchHHHHHHHHHHHHhccccc----C-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCcHHH
Confidence            345689999999999999863211    0       01267899999999999999999999999998    89999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         245 FFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       245 ~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                      ++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++.+ ....+.+++...+
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~  142 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRDKL-AQDDLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHH-HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---HHHHHHHHHHHHhccHHH-HHHHHHHHHHhCC
Confidence            99999999999999999999999999999999   999999999888777654 4445555544433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.08  E-value=2.4e-09  Score=98.53  Aligned_cols=95  Identities=8%  Similarity=0.016  Sum_probs=86.3

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCch
Q psy8368         163 KNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDV  242 (372)
Q Consensus       163 n~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~  242 (372)
                      +.+...|++++|+..|++++...+..               ..+++++|.|+.++|+|++|+..++++|+    .+|+++
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~l~~al~----~~p~~~  234 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAEGVLQEALD----KDSGHP  234 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH
Confidence            33445689999999999999986554               68999999999999999999999999998    999999


Q ss_pred             hHHHHHHHHHHhcCCHHH-HHHHHHHHHhhcCCCc
Q psy8368         243 KLFFVWGKALIGLQEWTS-AIKHLKTARKLAAKDS  276 (372)
Q Consensus       243 ka~~r~a~a~~~l~~~e~-A~~~~~~al~l~p~~~  276 (372)
                      .+++++|.++..+|++.+ |..+++++++++|+++
T Consensus       235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999976 5789999999999999

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.08  E-value=2.3e-09  Score=101.82  Aligned_cols=135  Identities=13%  Similarity=0.048  Sum_probs=102.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|++..|+..|.+|+.+.+.....        ......+++|+|.+|..+|+|++|+.+++++++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  212 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS  212 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            356777788888888888888888888888887654211        112367899999999999999999999999998


Q ss_pred             hhccCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----c-CCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFA--TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL-----A-AKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       233 ~~~~~~--p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-----~-p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      +.+..+  +....+++++|.+|..+|++++|+.+|++|+++     + |...   .+...++.+....+++.++
T Consensus       213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP---QAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH---HHHHHHHHHHHHCCCHHHH
Confidence            544332  113458999999999999999999999999995     4 5444   7777788777766665443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.07  E-value=6e-10  Score=111.89  Aligned_cols=109  Identities=13%  Similarity=-0.021  Sum_probs=83.5

Q ss_pred             ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368         168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV  247 (372)
Q Consensus       168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r  247 (372)
                      .|++++|+..|++++...+..               ..+++++|.+|..+|+|++|+.+++++++    ++|++..++++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~   62 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD---------------FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGHPEAVAR   62 (568)
T ss_dssp             -------------------CC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence            478999999999999886654               57899999999999999999999999997    99999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         248 WGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       248 ~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      +|.+|..+|++++|+..|+++++++|++.   .+...++.+....+++.++
T Consensus        63 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           63 LGRVRWTQQRHAEAAVLLQQASDAAPEHP---GIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999   9999999988887776544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=8.9e-10  Score=101.00  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|++|+..|.+|+..+...+..        ......+++|+|.+|.++|+|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            35578899999999999999999999999887654221        1233679999999999999999999999999985


Q ss_pred             hccCCC--CchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q psy8368         234 ASHFAT--KDVKLFFVWGKALIGLQ-EWTSAIKHLKTARKLAA  273 (372)
Q Consensus       234 ~~~~~p--~~~ka~~r~a~a~~~l~-~~e~A~~~~~~al~l~p  273 (372)
                      ....+.  ....+|+++|.+|..+| .+++|+.+|++|+.+..
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            543322  23789999999999999 57999999999998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=1.7e-09  Score=102.64  Aligned_cols=144  Identities=12%  Similarity=0.012  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|++..|+..|.+|+.+.+.....        ......+++|+|.||..+|+|++|+.++.++++
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  210 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE  210 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456677777888888888888888888888776543211        112367899999999999999999999999998


Q ss_pred             hhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368         233 FASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARK-----LAAKDSVRAEIDKEILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       233 ~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~-----l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      +....+..  ...+++++|.+|..+|++++|+.+|++|+.     .+|...   .+...++.+....+++.++ ...+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A-~~~~~~  286 (378)
T 3q15_A          211 LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP---KVLFGLSWTLCKAGQTQKA-FQFIEE  286 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHHHTTCHHHH-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH---HHHHHHHHHHHHCCCHHHH-HHHHHH
Confidence            65443322  456899999999999999999999999999     566555   8888888888887776543 344444


Q ss_pred             hcc
Q psy8368         306 MFS  308 (372)
Q Consensus       306 ~~~  308 (372)
                      .+.
T Consensus       287 al~  289 (378)
T 3q15_A          287 GLD  289 (378)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=1.2e-09  Score=100.20  Aligned_cols=143  Identities=10%  Similarity=0.012  Sum_probs=109.6

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..++|.+|+..|.+|+.+........         ....+++|+|.+|..+|+|++|+.+++++++..
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44555689999999999999999999999654322111         125689999999999999999999999999755


Q ss_pred             ccC---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         235 SHF---ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       235 ~~~---~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      ...   .+....+++++|.+|..+|+|++|+.++++|+++.+...   ..+.+...++.+...+++..+.....|.+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            433   233566899999999999999999999999999986542   334788888888888774323344444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.05  E-value=6.1e-09  Score=84.61  Aligned_cols=136  Identities=14%  Similarity=0.098  Sum_probs=106.1

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ...+..+...|..++..|+|.+|+..|.+++.+.+....         ......++.++|.+|..+|+|++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356888999999999999999999999999998765321         12235789999999999999999999999999


Q ss_pred             HhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHH
Q psy8368         232 QFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       232 ~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~  296 (372)
                      ++.+..+..  ...+++++|.+|..+|++++|+..+++++.+.+...   ....+...++.+....+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence            855433222  366899999999999999999999999998854321   22345566666665555544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.04  E-value=1.9e-09  Score=106.17  Aligned_cols=139  Identities=13%  Similarity=0.074  Sum_probs=106.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc------------CCChHHHHHHHHH------HHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ------------VTNYEDQMQLEEY------LCRVYRNLMVCY  214 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~------------~~~~~~~~~~~~l------~~~l~~Nla~~~  214 (372)
                      ..+..+...|..++..|++.+|+..|.+++...+...            ...+.....+...      ...++.++|.+|
T Consensus       241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            4577788888888888888888888888887654300            0111111111111      146788899999


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      ..+|+|++|+..++++++    .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...++.+....++
T Consensus       321 ~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~  393 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQS----LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP---EVPTFFAEILTDRGD  393 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCC
Confidence            999999999999999997    8888899999999999999999999999999999999998   888888888777766


Q ss_pred             HHHH
Q psy8368         295 YQKE  298 (372)
Q Consensus       295 ~~~~  298 (372)
                      +.++
T Consensus       394 ~~~A  397 (537)
T 3fp2_A          394 FDTA  397 (537)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.03  E-value=3.8e-10  Score=85.51  Aligned_cols=65  Identities=15%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK-LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       208 ~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k-a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .++|.++++.|+|++|+..++++++    .+|++.. +++.+|.+|..+|++++|+.+|+++++++|++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQ----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            3455566666666666666666665    5566655 666666666666666666666666666666655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.03  E-value=1.8e-09  Score=82.58  Aligned_cols=69  Identities=12%  Similarity=0.029  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ..+++++|.+|+++|+|++|+.+++++++    ++|+++.+|+.+|.+|..+|++++|+..|++++++.|.+.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            57899999999999999999999999998    9999999999999999999999999999999999988544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.03  E-value=2.2e-09  Score=95.86  Aligned_cols=113  Identities=12%  Similarity=-0.045  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|.+|+..|.+++........++.       .....++.++|.+|..+|+|++|+.+++++++
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH-------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34667889999999999999999999999998644322211       12267899999999999999999999999998


Q ss_pred             hhccC----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         233 FASHF----ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       233 ~~~~~----~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      +....    +|....+++.+|.+|..+|++++|+..|++++++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            42211    66788899999999999999999999999999873

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.02  E-value=2.1e-09  Score=102.06  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..+...|+|++|+..|.+|+.+.+....         ......++.|+|.||..+|+|++|+.+++++++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999765421         123367899999999999999999999999998


Q ss_pred             hhccC-C-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         233 FASHF-A-TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       233 ~~~~~-~-p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      +.... + |....+++++|.+|..+|++++|+.++++|+++.+
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            55432 4 77889999999999999999999999999999865

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=7e-09  Score=94.97  Aligned_cols=140  Identities=11%  Similarity=0.025  Sum_probs=105.1

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+...|+|++|+..|.+|+...........         ...+++|+|.+|..+|+|++|+.++++++++..
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ---------NLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            33455777778888888888888888876544322111         256899999999999999999999999996443


Q ss_pred             cCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368         236 HFATK----DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       236 ~~~p~----~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      .. |+    .+.+++++|.+|..+|+|++|+.++++|+++.++..   ..+.+...++.+...++++.++....+.+
T Consensus       187 ~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          187 AL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            33 33    236999999999999999999999999999875321   23477888888888877776553444444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.02  E-value=2.3e-09  Score=98.21  Aligned_cols=103  Identities=12%  Similarity=0.086  Sum_probs=95.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|+|.+|+..|.+++...+..               ..++.++|.++..+|+|++|+.+++++++  
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--   83 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARM--   83 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence            4556788999999999999999999999986554               57888999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus        84 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           84 --LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             --cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence              8999999999999999999999999999999999999887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.00  E-value=4.4e-09  Score=84.09  Aligned_cols=88  Identities=10%  Similarity=0.111  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.++|.++++.|+|++|+..+.+++.    .+|++..+++++|.+|..+|++++|+.+|+++++++|++.   .++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~   81 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHF   81 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH---HHHH
Confidence            57889999999999999999999999998    8999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8368         284 EILKADLGNQQYQKE  298 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~  298 (372)
                      .++.+....+++..+
T Consensus        82 ~l~~~~~~~~~~~~A   96 (137)
T 3q49_B           82 FLGQCQLEMESYDEA   96 (137)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhHHHH
Confidence            999988887766543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.99  E-value=4.7e-09  Score=77.54  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|.++++|++|+.+++++++ 
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-   71 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALE-   71 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence            46678889999999999999999999999986544               56889999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcC
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQ  256 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~  256 (372)
                         ++|++..+++++|.++..+|
T Consensus        72 ---~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           72 ---LDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHC
T ss_pred             ---cCCCCHHHHHHHHHHHHhcC
Confidence               89999999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.99  E-value=6.6e-09  Score=103.90  Aligned_cols=119  Identities=20%  Similarity=0.254  Sum_probs=95.5

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+++.|++++|+..|.+++...+..+...+.        ...++.+++.+|.+.|++++|+..++++++   
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---  544 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP--------WAATWANLGHAYRKLKMYDAAIDALNQGLL---  544 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG--------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---
Confidence            345566666666677777777777666664432111110        146899999999999999999999999998   


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                       .+|++..+|+.+|.+|...|++++|+..|+++++++|++.   .+...+..+.
T Consensus       545 -~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~  594 (597)
T 2xpi_A          545 -LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI---MASDLLKRAL  594 (597)
T ss_dssp             -HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHTT
T ss_pred             -hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHH
Confidence             8899999999999999999999999999999999999999   8888777654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=5.1e-09  Score=95.90  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=91.9

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|++|+..|.+|+.+....+...        .....+++|+|.+|.++|+|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~--------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE--------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc--------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            467888999999999999999999999998865543211        112478999999999999999999999999985


Q ss_pred             hccCCCC--chhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhcC
Q psy8368         234 ASHFATK--DVKLFFVWGKALIGLQEWTSA-IKHLKTARKLAA  273 (372)
Q Consensus       234 ~~~~~p~--~~ka~~r~a~a~~~l~~~e~A-~~~~~~al~l~p  273 (372)
                      ....+..  ...+++++|.+|..+|++++| ..+|++|+.+..
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            4322111  367899999999999999999 888999998754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=3.6e-09  Score=79.99  Aligned_cols=61  Identities=7%  Similarity=0.015  Sum_probs=54.5

Q ss_pred             HH-HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CR-VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~-l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .. +++++|.||..+|+|++|+.+++++++    ++|++..++++        +.+.+|+..|+++..++|++.
T Consensus        34 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           34 KDEAYYLMGNAYRKLGDWQKALNNYQSAIE----LNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            45 899999999999999999999999998    89999998866        677888999999999998875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.98  E-value=2.3e-09  Score=89.10  Aligned_cols=105  Identities=12%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC--------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF--------------ATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~--------------~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                      +..+.++|.++++.|+|.+|+..|+++|++.+..              +|.+..+|+++|.||..+|+|++|+.++.+|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            5678899999999999999999999999832110              67788999999999999999999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         270 KLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       270 ~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +++|++.   .+...++.+...++++.++ ...|.+.+...+.
T Consensus        91 ~~~p~~~---~a~~~~g~~~~~~g~~~~A-~~~~~~al~l~p~  129 (162)
T 3rkv_A           91 KREETNE---KALFRRAKARIAAWKLDEA-EEDLKLLLRNHPA  129 (162)
T ss_dssp             HHSTTCH---HHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCGG
T ss_pred             hcCCcch---HHHHHHHHHHHHHhcHHHH-HHHHHHHHhcCCC
Confidence            9999999   9999999999888877644 3455555544433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.96  E-value=4.9e-09  Score=95.25  Aligned_cols=135  Identities=13%  Similarity=0.083  Sum_probs=108.3

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|++.+|+..|.+++.........+.       .....++.++|.+|..+|+|++|+.++++++++
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH-------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            4566788999999999999999999999998643211111       123678999999999999999999999999984


Q ss_pred             hcc----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------cCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASH----FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL--------AAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       234 ~~~----~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l--------~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      ...    .+|....+++.+|.+|..+|++++|+..|++++.+        +|...   .+...++.+....+++.++
T Consensus       141 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A  214 (311)
T 3nf1_A          141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA---KTKNNLASCYLKQGKFKQA  214 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH---HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHcCCHHHH
Confidence            321    14667889999999999999999999999999998        45444   7788888887777666544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.95  E-value=5.2e-09  Score=96.69  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=85.3

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+.+.|..+.. |+|++|+.+|++|+.+.+....         ......+++|+|.+|.++|+|++|+.++++++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35667777888877 8888888888888877654210         1123578899999999999999999999999984


Q ss_pred             hccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         234 ASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       234 ~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .+.....  ...+++.+|.++..+|++++|+.+|++++ ++|++.
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            4322211  24478889999999999999999999999 999765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.95  E-value=4.8e-09  Score=98.52  Aligned_cols=97  Identities=9%  Similarity=-0.057  Sum_probs=88.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+.+.|..+++.|+|.+|+..|.+|+.+.+..               ..+++++|.||..+|+|++|+.+++++++  
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~--  258 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQ--  258 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            6788999999999999999999999999997655               67899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSA-IKHLKTARK  270 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A-~~~~~~al~  270 (372)
                        ++|++..+++.++.++..++++++| ...|.+++.
T Consensus       259 --l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          259 --LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             --HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999999999 446666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.94  E-value=5.7e-09  Score=96.43  Aligned_cols=110  Identities=13%  Similarity=0.062  Sum_probs=62.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|+.+...|+|.+|+..|.+++.+.......         .....++.|+|.+|.++|+|++|+.++++++++.
T Consensus        36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  106 (307)
T 2ifu_A           36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL---------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY  106 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            3444455677777777777777777777775443110         0113456666666666666666666666666533


Q ss_pred             ccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         235 SHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       235 ~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      ......  ...++.++|.+|.. |++++|+.+|++|+.+.|.
T Consensus       107 ~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~  147 (307)
T 2ifu_A          107 VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN  147 (307)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Confidence            222111  23455666666665 6666666666666666553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.94  E-value=1.3e-08  Score=96.52  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=97.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|++|+..|.+|+.+......         ......+++|+|.||..+|+|++|+.+++++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46778889999999999999999999999998754321         113467899999999999999999999999997


Q ss_pred             hhcc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         233 FASH-FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       233 ~~~~-~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      +... .+|....+++.+|.+|..+|++++|+..+++++++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            5432 46778899999999999999999999999999999764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=1.4e-08  Score=78.08  Aligned_cols=101  Identities=9%  Similarity=-0.021  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...++++|.+++..|+|++|+..+++++.    .+|.+..+++.+|.+|..+|++++|+..++++++++|++.   .+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~   76 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---KGYS   76 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH---HHHH
Confidence            46788999999999999999999999998    8999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .++.+....+++.+ ....+.+.+...+.
T Consensus        77 ~~a~~~~~~~~~~~-A~~~~~~~~~~~~~  104 (118)
T 1elw_A           77 RKAAALEFLNRFEE-AKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHHHHHHHTTCHHH-HHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhhHHH-HHHHHHHHHHcCCC
Confidence            99988887776644 34556665554433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.93  E-value=1.5e-08  Score=101.30  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=104.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..+++.|++++|+..|.+++...+..               ...+++++.+|.+.|++++|+..++++++  
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  435 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAAR--  435 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            4566678888888899999999998888875443               56888999999999999999999999997  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                        .+|++..+++.+|.+|...|++++|+..|+++++++|.+.   .+...+..+....++..+
T Consensus       436 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~  493 (597)
T 2xpi_A          436 --LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP---LLLNELGVVAFNKSDMQT  493 (597)
T ss_dssp             --TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHH
T ss_pred             --hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCHHH
Confidence              8899999999999999999999999999999999999998   888888777766655543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.93  E-value=3.5e-09  Score=80.86  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CccHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK--DSVRAEID  282 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~--~~~~~~~~  282 (372)
                      .++.++|.++...|+|++|+.+++++++    .+|.+..+++.+|.+|..+|++++|+..|+++++++|+  +.   .+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~   79 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK---DVW   79 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH---HHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH---HHH
Confidence            5678999999999999999999999998    89999999999999999999999999999999999999  88   888


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhhc
Q psy8368         283 KEILKADLGN-QQYQKETKARCMKMF  307 (372)
Q Consensus       283 ~~l~~~~~~~-~~~~~~~~~~~~~~~  307 (372)
                      ..++.+.... +++.+ ....+.+..
T Consensus        80 ~~l~~~~~~~~~~~~~-A~~~~~~~~  104 (112)
T 2kck_A           80 AAKADALRYIEGKEVE-AEIAEARAK  104 (112)
T ss_dssp             HHHHHHHTTCSSCSHH-HHHHHHHHG
T ss_pred             HHHHHHHHHHhCCHHH-HHHHHHHHh
Confidence            8888887766 65543 333444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.92  E-value=6.9e-09  Score=94.22  Aligned_cols=113  Identities=12%  Similarity=-0.004  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|.+|+..|.+++.+.......+.       .....++.++|.+|..+|+|++|+.+++++++
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH-------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567888999999999999999999999998633211111       12267899999999999999999999999998


Q ss_pred             hhccC----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         233 FASHF----ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       233 ~~~~~----~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      .....    +|....+++.+|.+|..+|++++|+..|++++++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            43322    67788899999999999999999999999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.92  E-value=1.8e-08  Score=81.79  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|.+++.+.+....         ......++.++|.++..+|+|++|+.+++++++.
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3457888999999999999999999999998765421         1123678999999999999999999999999985


Q ss_pred             hccCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         234 ASHFA--TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       234 ~~~~~--p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      .....  +....+++.+|.+|..+|++++|+..+++++++....
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            54332  2246789999999999999999999999999986643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.92  E-value=9.3e-09  Score=100.40  Aligned_cols=115  Identities=11%  Similarity=0.023  Sum_probs=87.3

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhh
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN---NKQYKLTCDCASKALQFA  234 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k---l~~y~~Ai~~~~~aL~~~  234 (372)
                      +...|..++..|++.+|+..|.+++...+..+....         ...++.++|.+|..   +|++++|+..++++++  
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--  443 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK--  443 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--
Confidence            344455555555555555555555554433211000         01288999999999   9999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                        .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+.-+
T Consensus       444 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~  492 (514)
T 2gw1_A          444 --LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME---EKLQAITFA  492 (514)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH---HHHHHHHHH
T ss_pred             --hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH---HHHHHHHHH
Confidence              8999999999999999999999999999999999999998   777666443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.91  E-value=1.8e-08  Score=85.85  Aligned_cols=135  Identities=6%  Similarity=-0.035  Sum_probs=105.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|.+++.+......         ......++.|+|.+|..+|+|++|+.++.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4678889999999999999999999999998754321         1123678999999999999999999999999986


Q ss_pred             hccCC--C-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--Cc-cHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFA--T-KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK--DS-VRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       234 ~~~~~--p-~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~--~~-~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      .....  + ....+++++|.+|..+|++++|+..+++++.+.+.  +. ..+.+...++.+....+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  165 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE  165 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence            54333  2 34678999999999999999999999999987543  22 122344666666666665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.91  E-value=1.2e-08  Score=83.78  Aligned_cols=83  Identities=11%  Similarity=0.071  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhhccCC-C-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccH
Q psy8368         204 CRVYRNLMVCYNNNK---QYKLTCDCASKALQFASHFA-T-KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVR  278 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~---~y~~Ai~~~~~aL~~~~~~~-p-~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~  278 (372)
                      ..+.+|+|.|+.+.+   ++.+++..++.+++    .+ | ++..++|.+|.+|+++++|++|+.+++++|+++|+|.  
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~--  105 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN--  105 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH--
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--
Confidence            578899999999988   77899999999998    66 6 5799999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8368         279 AEIDKEILKADLGNQ  293 (372)
Q Consensus       279 ~~~~~~l~~~~~~~~  293 (372)
                       .+......+..++.
T Consensus       106 -QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A          106 -QAKELERLIDKAMK  119 (152)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHH
Confidence             88877777766543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.90  E-value=1.6e-08  Score=79.80  Aligned_cols=96  Identities=17%  Similarity=0.086  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...++++|.+++..++|++|+..++++++    .+|.+..+++.+|.+|..+|++++|+..|+++++++|++.   .+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~   88 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---KGYT   88 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch---HHHH
Confidence            57889999999999999999999999997    8999999999999999999999999999999999999999   8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368         284 EILKADLGNQQYQKETKARCMKMF  307 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~  307 (372)
                      .++.+....+++.++ ...+.+.+
T Consensus        89 ~la~~~~~~~~~~~A-~~~~~~~~  111 (133)
T 2lni_A           89 RKAAALEAMKDYTKA-MDVYQKAL  111 (133)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHhhHHHH-HHHHHHHH
Confidence            999888777666443 33444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.90  E-value=1.4e-08  Score=83.58  Aligned_cols=99  Identities=10%  Similarity=0.056  Sum_probs=86.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..++..|+|.+|+..|.+++...+..               ..++.++|.+|..+|+|++|+.++.++++  
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--  109 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVK--  109 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence            4567889999999999999999999999987654               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHH--HHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         235 SHFATKDVKLFFVW--GKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       235 ~~~~p~~~ka~~r~--a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                        ++|.+..++..+  +..+..+|++++|+..+.++..+.
T Consensus       110 --~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          110 --VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             --HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence              889998888554  444888999999999999887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.90  E-value=1.1e-08  Score=97.32  Aligned_cols=128  Identities=14%  Similarity=0.111  Sum_probs=106.0

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|.+|+..|.+++...+..+           .....++.++|.+|..+|+|++|+.+++++++
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT  114 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5577888999999999999999999999999843321           12356899999999999999999999999998


Q ss_pred             hhccC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------cCCCccHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHF--ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL------AAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       233 ~~~~~--~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l------~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      +....  +|....+++.+|.+|..+|++++|+..|.+++.+      .|...   .+...++.+....++
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG---RALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH---HHHHHHHHHHHHcCc
Confidence            44322  4567889999999999999999999999999998      34444   677777777777666

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.89  E-value=4.2e-09  Score=90.51  Aligned_cols=101  Identities=11%  Similarity=0.013  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDV----------------KLFFVWGKALIGLQEWTSAIKHLKT  267 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~----------------ka~~r~a~a~~~l~~~e~A~~~~~~  267 (372)
                      ...+.++|.++++.|+|.+|+..++++++    +.|.+.                .+++++|.+|..+|+|++|+.+|.+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALD----FFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            56788999999999999999999999998    777776                8999999999999999999999999


Q ss_pred             HHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         268 ARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       268 al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +++++|++.   .+...++.+....+++.+ ....|.+.+...+.
T Consensus       114 al~~~p~~~---~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~p~  154 (198)
T 2fbn_A          114 VLKIDKNNV---KALYKLGVANMYFGFLEE-AKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHSTTCH---HHHHHHHHHHHHHTCHHH-HHHHHHHHHHHSTT
T ss_pred             HHHhCcccH---HHHHHHHHHHHHcccHHH-HHHHHHHHHHHCCC
Confidence            999999999   999999999888877754 44556666554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.88  E-value=4.5e-08  Score=95.02  Aligned_cols=122  Identities=11%  Similarity=0.118  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy8368         148 FAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCA  227 (372)
Q Consensus       148 ~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~  227 (372)
                      ..+++..+....+.+......|+|++|+..|.++|.+....-.++.       ...+..++|+|.+|..+|+|++|+.++
T Consensus       291 v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~H-------p~~a~~~~nLa~~y~~~g~~~eA~~~~  363 (433)
T 3qww_A          291 IRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSN-------VYMLHMMYQAMGVCLYMQDWEGALKYG  363 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTS-------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhc-------hHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            3455556666677777777889999999999999998755433322       123688999999999999999999999


Q ss_pred             HHHHHhhcc-CC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCc
Q psy8368         228 SKALQFASH-FA---TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL-----AAKDS  276 (372)
Q Consensus       228 ~~aL~~~~~-~~---p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-----~p~~~  276 (372)
                      +++|.+.+. +.   |+-...++++|.+|..+|+|++|+..|++|+++     -|+++
T Consensus       364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp  421 (433)
T 3qww_A          364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP  421 (433)
T ss_dssp             HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            999986542 33   445668999999999999999999999999986     47787

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.87  E-value=1.7e-08  Score=79.71  Aligned_cols=102  Identities=9%  Similarity=0.053  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDV---KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID  282 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~---ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~  282 (372)
                      .++++|.+++..|+|++|+..++++++    .+|++.   .+++.+|.+|..+|++++|+..|.++++++|++.....+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLE----LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            467899999999999999999999998    788888   7999999999999999999999999999999993222888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         283 KEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       283 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      ..++.+....+++.+ ....+.+++...+.
T Consensus        80 ~~la~~~~~~g~~~~-A~~~~~~~~~~~p~  108 (129)
T 2xev_A           80 LKLGLSQYGEGKNTE-AQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHTTCHHH-HHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHCCC
Confidence            888888887776644 44556665554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=2.5e-08  Score=80.30  Aligned_cols=101  Identities=11%  Similarity=-0.026  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ...++++|.+++..|+|.+|+..++++++    .+|++   ..+++++|.+|..+|++++|+.+|+++++++|++.   .
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~  100 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV---K  100 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH---H
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH---H
Confidence            56788999999999999999999999997    88987   89999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         281 IDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +...++.+....+++.+ ....+.+.+.....
T Consensus       101 ~~~~~a~~~~~~~~~~~-A~~~~~~al~~~p~  131 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQ-AVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHTCHHH-HHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCC
Confidence            99999998888776654 34555555544333

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.86  E-value=5.6e-08  Score=94.39  Aligned_cols=133  Identities=12%  Similarity=-0.004  Sum_probs=102.2

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+.........+..+|+|++|+..|.+++......-.++.       ......++|+|.+|..+|+|++|+.++.++|.
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h-------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN-------IYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc-------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34555566667788899999999999999987654322222       12378899999999999999999999999997


Q ss_pred             hhcc-C---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHHHHH
Q psy8368         233 FASH-F---ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL-----AAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       233 ~~~~-~---~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-----~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      +... +   .|.-...++++|.+|..+|+|++|+..|++|+++     -|+++..+++...|..++..+
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            6542 3   3445668999999999999999999999999976     478884445555555555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.85  E-value=3.3e-08  Score=90.14  Aligned_cols=129  Identities=16%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|.+++...+..           ......++.++|.+|..+|+|++|+.++++++.+.
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-----------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            4567788999999999999999999999984332           11235789999999999999999999999999754


Q ss_pred             ccC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHH
Q psy8368         235 SHF--ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       235 ~~~--~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~  294 (372)
                      ...  .|....+++.+|.+|..+|++++|+..+.+++++.|...   ....+...++.+....++
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            322  344678999999999999999999999999999977543   122366666666666665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=6.6e-08  Score=86.95  Aligned_cols=108  Identities=17%  Similarity=0.069  Sum_probs=68.5

Q ss_pred             HHHHHhhHHHHh----ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHH
Q psy8368         156 QELGASGKNAFN----DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCDCA  227 (372)
Q Consensus       156 ~~~k~~Gn~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~~~  227 (372)
                      ..+...|..++.    .+++.+|+..|++++..-  .               ...++++|.+|..    .+++++|+.++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~  101 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------------SNGCHLLGNLYYSGQGVSQNTNKALQYY  101 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence            344455555555    555555555555555441  0               4566677777777    77777777777


Q ss_pred             HHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         228 SKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       228 ~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +++++    .  +++.+++++|.+|..    .+++++|+.+|++++++.  +.   .+...++.+...
T Consensus       102 ~~a~~----~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~---~a~~~lg~~~~~  158 (273)
T 1ouv_A          102 SKACD----L--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG---DGCTILGSLYDA  158 (273)
T ss_dssp             HHHHH----T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH---HHHHHHHHHHHH
T ss_pred             HHHHH----c--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHc
Confidence            77775    3  366777777777777    777777777777777665  34   556666666555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.84  E-value=4.5e-08  Score=90.26  Aligned_cols=132  Identities=11%  Similarity=-0.061  Sum_probs=101.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+...|++++|...|++++...+...              ..++.+++.++.++|++++|+..++++++   
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---  162 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKARE---  162 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc--------------cHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence            4566788888888999999999999998654321              12788889999999999999999999997   


Q ss_pred             cCCCCchhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         236 HFATKDVKLFFVWGKALI-GLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~-~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                       .+|.+..+|+..+.... .+|++++|+..|+++++++|++.   .++..+..+....++.. ..+..|.+.+..
T Consensus       163 -~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~-~A~~~~~~al~~  232 (308)
T 2ond_A          163 -DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNEDN-NTRVLFERVLTS  232 (308)
T ss_dssp             -STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHTTCCHH-HHHHHHHHHHHS
T ss_pred             -cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHH-HHHHHHHHHHhc
Confidence             77888877776665543 37999999999999999999988   88888777776655443 455666666654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.84  E-value=2.2e-08  Score=94.46  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=106.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|.+|+..|.+++.+.+....         ......++.++|.+|..+|+|++|+.++++++++
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3557888999999999999999999999999766421         1123568999999999999999999999999984


Q ss_pred             hccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       234 ~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      .+.....  ...+++.+|.+|..+|++++|+..|++++++.+...   ....+...++.+....+++.++
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4332211  267899999999999999999999999999976542   1125667777777766655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.82  E-value=3.1e-08  Score=93.47  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=104.8

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|+|.+|+..|++++...+..+           .....++.++|.+|..+|+|++|+.++++++.+.
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999843321           1235789999999999999999999999999854


Q ss_pred             ccC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHH
Q psy8368         235 SHF--ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       235 ~~~--~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~  294 (372)
                      ...  .|....+++.+|.+|..+|++++|+..+.+++.+.|...   ....+...++.+....++
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            433  344688999999999999999999999999999987542   122466777777666666

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.81  E-value=4.3e-08  Score=95.08  Aligned_cols=103  Identities=10%  Similarity=0.046  Sum_probs=85.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc-----------------
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN-----------------  217 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl-----------------  217 (372)
                      ...+...|..+...|++.+|+..|.+|+...|..               ..++.++|.||...                 
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~  311 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN---------------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRK  311 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh---------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4567789999999999999999999999987665               46677777777543                 


Q ss_pred             --cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         218 --KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       218 --~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                        +.+++|+.++.++++    ++|.+..+++.+|.+|..+|++++|+.+|+++++++|++.
T Consensus       312 ~~~~~~~A~~~~~~a~~----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADE----ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             HHhhHHHHHHHHHHHhh----cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence              346788888888887    7888888888888888888888888888888888888765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=6.8e-08  Score=75.48  Aligned_cols=97  Identities=11%  Similarity=0.029  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.++|.++...++|++|+..+++++.    .+|++..+++.+|.+|..+|++++|+..+.+++.++|++.   .+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~   84 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS---KAYG   84 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH---HHHH
Confidence            67889999999999999999999999998    8899999999999999999999999999999999999999   8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFS  308 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
                      .++.+....+++... ...+.+.+.
T Consensus        85 ~~~~~~~~~~~~~~A-~~~~~~~~~  108 (131)
T 2vyi_A           85 RMGLALSSLNKHVEA-VAYYKKALE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHH-HHHHHHHHh
Confidence            888888777666433 334444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.79  E-value=5.4e-09  Score=98.29  Aligned_cols=102  Identities=10%  Similarity=-0.127  Sum_probs=57.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+.+.|..+++.|+|.+|+..|.+++.+.+..               ..+++|+|.||..+|+|++|+.+++++++   
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~---  292 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------------PKALFRRGKAKAELGQMDSARDDFRKAQK---  292 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence            378899999999999999999999999987654               68899999999999999999999999997   


Q ss_pred             cCCCCchhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATKDVKLFFVWGKAL-IGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~-~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       ++|++..++..++.+. ...+..+.+...|.+++.+.|++.
T Consensus       293 -l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          293 -YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ------------------------------------------
T ss_pred             -HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence             9999999999999984 556778899999999999999887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.79  E-value=1e-07  Score=87.89  Aligned_cols=112  Identities=13%  Similarity=0.080  Sum_probs=93.7

Q ss_pred             HHHHHHhhHHHH-------hccCH-------HHHHHHHHHHHH-hhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy8368         155 AQELGASGKNAF-------NDKNI-------VSAVRRYRDAVK-LLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ  219 (372)
Q Consensus       155 ~~~~k~~Gn~~~-------~~g~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~  219 (372)
                      +..+...|..+.       ..|++       ++|...|.+|+. +.+..               ..++.++|.++.++|+
T Consensus        50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~  114 (308)
T 2ond_A           50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCC
Confidence            345556666655       35775       999999999999 45544               5789999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         220 YKLTCDCASKALQFASHFATKDVK-LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       220 y~~Ai~~~~~aL~~~~~~~p~~~k-a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      +++|+..++++++    ++|.+.. +|+.+|.++..+|++++|+..|++|++++|.+.   .+......+
T Consensus       115 ~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~  177 (308)
T 2ond_A          115 YEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH---HVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT---HHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Confidence            9999999999997    8999887 999999999999999999999999999999887   665444333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.79  E-value=7.2e-08  Score=74.67  Aligned_cols=98  Identities=17%  Similarity=0.247  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ..++.++|.++...++|++|+..+.++++    .+|.+..+++.+|.++...|++++|+..|++++.++|.+.   .+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~   81 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWY   81 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---HHHH
Confidence            46788999999999999999999999998    7899999999999999999999999999999999999999   8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                      .+..+....+++.+ ....+.+++..
T Consensus        82 ~la~~~~~~~~~~~-A~~~~~~~~~~  106 (125)
T 1na0_A           82 NLGNAYYKQGDYDE-AIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHTTCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHH-HHHHHHHHHHh
Confidence            88888777665543 34445555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=1e-07  Score=81.05  Aligned_cols=114  Identities=15%  Similarity=0.015  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..+...|+|.+|+..|.+++.+....+...        .....+++|+|.++..+|+|++|+.++++++.
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP--------LAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH--------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3567788999999999999999999999999976442111        12267899999999999999999999999997


Q ss_pred             hhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368         233 FASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       233 ~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~  274 (372)
                      +....+..  ...++..+|.+|..+|++++|+..+++++.+...
T Consensus       136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            55433332  2446789999999999999999999999998653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=3.9e-07  Score=81.83  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=92.3

Q ss_pred             HHHHHHHhhHHHHh----ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHH
Q psy8368         154 RAQELGASGKNAFN----DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCD  225 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~  225 (372)
                      .+..+...|..++.    .+++.+|+..|++|+..-  .               ..+++++|.+|..    .+++++|+.
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~lg~~~~~~~~~~~~~~~A~~  135 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---------------AEGCASLGGIYHDGKVVTRDFKKAVE  135 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------------ccHHHHHHHHHHcCCCcccCHHHHHH
Confidence            35677889999999    999999999999999762  1               5688899999999    999999999


Q ss_pred             HHHHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         226 CASKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       226 ~~~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +++++++    .+  +..+++++|.+|..    .+++++|+.+|+++++..  +.   .+...++.+...
T Consensus       136 ~~~~a~~----~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~---~a~~~lg~~~~~  194 (273)
T 1ouv_A          136 YFTKACD----LN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DS---PGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHH----TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH---HHHHHHHHHHHH
T ss_pred             HHHHHHh----cC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH---HHHHHHHHHHHc
Confidence            9999997    43  67889999999998    999999999999998874  45   666777777665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.76  E-value=5.4e-09  Score=103.04  Aligned_cols=103  Identities=10%  Similarity=0.050  Sum_probs=89.9

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..+++.|+|++|+..|++|+++.+..               ..+++|+|.+|..+|+|++|+.+++++++  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~--  102 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVK--  102 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence            5678899999999999999999999999986554               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhcCCCc
Q psy8368         235 SHFATKDVKLFFVWGKA--LIGLQEWTSAIKHLK-----------TARKLAAKDS  276 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a--~~~l~~~e~A~~~~~-----------~al~l~p~~~  276 (372)
                        ++|++..+++.++.+  +..+|++++|+..+.           +++.++|+..
T Consensus       103 --~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          103 --VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             --HSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             --hCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence              899999999999999  899999999999999           8888888753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.75  E-value=3.9e-08  Score=89.60  Aligned_cols=143  Identities=15%  Similarity=0.105  Sum_probs=108.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|++.+|+..|.+++.+.+....         ......++.++|.+|..+|++++|+.++++++++
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3557788999999999999999999999998765321         1223568999999999999999999999999984


Q ss_pred             hccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         234 ASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       234 ~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      .+.....  ...+++.+|.+|..+|++++|+..+++++.+.+...   ....+...++.+....++..++ ...+.+.
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a  329 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA-MHFAEKH  329 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHH
Confidence            4332211  267899999999999999999999999999876432   1224666677776666655433 3344443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.75  E-value=4.9e-08  Score=89.08  Aligned_cols=89  Identities=10%  Similarity=0.108  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.++|.++++.|+|++|+..++++++    .+|++..+++++|.+|..+|++++|+.+|++|++++|++.   .+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~   76 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHF   76 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHH
Confidence            46788999999999999999999999998    8999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8368         284 EILKADLGNQQYQKET  299 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~  299 (372)
                      .++.+....+++.++.
T Consensus        77 ~lg~~~~~~g~~~~A~   92 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAI   92 (281)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            9999888877775544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.74  E-value=8.6e-08  Score=87.31  Aligned_cols=110  Identities=7%  Similarity=-0.118  Sum_probs=84.7

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .....|..+++.++|.+|+..|+.++....      +.       +...+++++|.++..+|++.+|+.++++++..  .
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d------~~-------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD------KF-------LAGAAGVAHGVAAANLALFTEAERRLTEANDS--P  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC------HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC------cc-------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC--C
Confidence            667788888888999998888876654310      00       11357889999999999999999999999840  0


Q ss_pred             CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         237 FATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       237 ~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                      .+|. ...+++++|.|+..+|+.++|...|++++..+|+ .   .+...|
T Consensus       202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~---~~~~aL  247 (282)
T 4f3v_A          202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-P---KVAAAL  247 (282)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-H---HHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-H---HHHHHH
Confidence            1155 7779999999999999999999999999999998 7   554444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=5.3e-08  Score=76.24  Aligned_cols=98  Identities=8%  Similarity=0.063  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------c
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-------S  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~-------~  276 (372)
                      ...+.++|.++...|+|++|+.++.++++    .+|.++.+++.+|.+|..+|++++|+.+|.+++.+.|++       .
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            46788999999999999999999999998    889999999999999999999999999999999999877       5


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         277 VRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       277 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                         .+...++.+....+++.. ....+.+.+..
T Consensus        80 ---~~~~~la~~~~~~~~~~~-A~~~~~~~~~~  108 (131)
T 1elr_A           80 ---KAYARIGNSYFKEEKYKD-AIHFYNKSLAE  108 (131)
T ss_dssp             ---HHHHHHHHHHHHTTCHHH-HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhccHHH-HHHHHHHHHHh
Confidence               777778877777666543 34445555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.74  E-value=4.9e-08  Score=92.81  Aligned_cols=134  Identities=18%  Similarity=0.177  Sum_probs=98.4

Q ss_pred             HHHHHHHhhHHHHhccC-----------------HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKN-----------------IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN  216 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~-----------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k  216 (372)
                      .+..+...|..++..|+                 |..|+..|.+++.+......         ......++.++|.+|..
T Consensus       165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~  235 (411)
T 4a1s_A          165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD---------RGAQGRACGNLGNTYYL  235 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHH
Confidence            35577889999999999                 99999999999887654311         12235688899999999


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHH
Q psy8368         217 NKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLG  291 (372)
Q Consensus       217 l~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~  291 (372)
                      +|+|++|+.++++++++.+.....  ...+++.+|.+|..+|++++|+..|++++.+.|...   ....+...++.+...
T Consensus       236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  315 (411)
T 4a1s_A          236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL  315 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999743221111  233888999999999999999999999999887542   112555666666555


Q ss_pred             HHHHH
Q psy8368         292 NQQYQ  296 (372)
Q Consensus       292 ~~~~~  296 (372)
                      .+++.
T Consensus       316 ~g~~~  320 (411)
T 4a1s_A          316 LHEFN  320 (411)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            55443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.72  E-value=1.2e-07  Score=73.06  Aligned_cols=83  Identities=12%  Similarity=0.052  Sum_probs=67.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|+.+|..++|..|+..|.+|++..+.......        ....++.++|.||.++|+++.|+.+++++++  
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~--------~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--   74 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI--------DKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--   74 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS--------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcc--------cHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--
Confidence            456789999999999999999999999998754321111        1157788999999999999999999999997  


Q ss_pred             ccCCCCchhHHHHHH
Q psy8368         235 SHFATKDVKLFFVWG  249 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a  249 (372)
                        ++|++..++.+++
T Consensus        75 --l~P~~~~~~~n~~   87 (104)
T 2v5f_A           75 --LDPEHQRANGNLK   87 (104)
T ss_dssp             --HCTTCHHHHHHHH
T ss_pred             --cCCCCHHHHhhHH
Confidence              8899888877776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=2.2e-07  Score=93.39  Aligned_cols=116  Identities=2%  Similarity=-0.129  Sum_probs=107.0

Q ss_pred             HHHHHHhhHHHHhccC----------HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc--CHHH
Q psy8368         155 AQELGASGKNAFNDKN----------IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK--QYKL  222 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~--~y~~  222 (372)
                      .+.+..+|..+...++          +++|+..|.+++...++.               ..++++++.++.+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------------y~aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcccccHHH
Confidence            5677888888888888          999999999999998776               689999999999999  7799


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         223 TCDCASKALQFASHFATKDVKLFFVWGKALIGLQ-EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~-~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      ++.+|+++++    .||.|..||+.|+.++..++ .++++++++.++++++|+|.   .++.....+...+
T Consensus       128 el~~~~k~l~----~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~---saW~~r~~ll~~l  191 (567)
T 1dce_A          128 ELELCARFLE----ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY---SSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHH----HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc---cHHHHHHHHHHhh
Confidence            9999999998    99999999999999999999 99999999999999999999   8988888887664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=9e-08  Score=83.42  Aligned_cols=112  Identities=12%  Similarity=-0.019  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc----CHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK----QYKLTCDCAS  228 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~----~y~~Ai~~~~  228 (372)
                      ..+..+...|..++..+++.+|+..|++|++.-  .               ...++|+|.+|.. +    ++.+|+.+++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~---------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D---------------GDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            346788889999999999999999999998752  1               4566777777776 5    7777777777


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHHH
Q psy8368         229 KALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAK--DSVRAEIDKEILKADLG  291 (372)
Q Consensus       229 ~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~--~~~~~~~~~~l~~~~~~  291 (372)
                      ++++      +.++.+++++|.+|..    .+++++|+..|++|++..|.  ++   .+...|+.+...
T Consensus        78 ~A~~------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~---~a~~~Lg~~y~~  137 (212)
T 3rjv_A           78 KAVE------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV---DAQMLLGLIYAS  137 (212)
T ss_dssp             HHHH------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH---HHHHHHHHHHHH
T ss_pred             HHHH------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH---HHHHHHHHHHHc
Confidence            7764      4677777777777776    77777777777777777763  35   666666666544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.70  E-value=1.3e-07  Score=72.94  Aligned_cols=84  Identities=12%  Similarity=-0.013  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHF---ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI  281 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~---~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~  281 (372)
                      .-++.+|..+++.++|..|+.+++.|++....-   .+.....+..+|.||..+|+++.|+..++++++++|++.   .+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~---~~   82 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ---RA   82 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HH
Confidence            446789999999999999999999999854221   245778899999999999999999999999999999999   77


Q ss_pred             HHHHHHHHHH
Q psy8368         282 DKEILKADLG  291 (372)
Q Consensus       282 ~~~l~~~~~~  291 (372)
                      ...+..+...
T Consensus        83 ~~n~~~~~~~   92 (104)
T 2v5f_A           83 NGNLKYFEYI   92 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HhhHHHHHHH
Confidence            7776655443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.68  E-value=7.6e-08  Score=91.61  Aligned_cols=105  Identities=10%  Similarity=0.191  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASH------------FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~------------~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      ...+.++|.++++.++|++|+..|+++|++.+.            ++|.+..+|+++|.+|..+|+|++|+.+|++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            567889999999999999999999999974332            56778899999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         272 AAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       272 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      +|++.   .+...++.+...++++.++ ...|++.+.....
T Consensus       303 ~p~~~---~a~~~lg~~~~~~g~~~eA-~~~l~~Al~l~P~  339 (370)
T 1ihg_A          303 DPSNT---KALYRRAQGWQGLKEYDQA-LADLKKAQEIAPE  339 (370)
T ss_dssp             CTTCH---HHHHHHHHHHHHTTCHHHH-HHHHHHHHHHCTT
T ss_pred             CchhH---HHHHHHHHHHHHccCHHHH-HHHHHHHHHhCCC
Confidence            99999   9999999998888877543 4455555554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.67  E-value=2.4e-07  Score=80.63  Aligned_cols=112  Identities=11%  Similarity=-0.053  Sum_probs=96.2

Q ss_pred             HHHHHHHhhHHHHhcc----CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHH
Q psy8368         154 RAQELGASGKNAFNDK----NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCD  225 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~  225 (372)
                      .+..+...|..+.. +    ++.+|+..|++|+..-  .               ...++|+|.+|..    .+++.+|+.
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--~---------------~~a~~~Lg~~y~~g~g~~~d~~~A~~  110 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--S---------------KSGEIVLARVLVNRQAGATDVAHAIT  110 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCccCHHHHHH
Confidence            35677888999888 7    8999999999997641  1               5788999999998    899999999


Q ss_pred             HHHHHHHhhccCCC--CchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         226 CASKALQFASHFAT--KDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       226 ~~~~aL~~~~~~~p--~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +++++++    .++  .++.+++++|.+|..    .+++++|+.+|++|+++ |.+.   .+...|..+...
T Consensus       111 ~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~---~a~~~Lg~~y~~  174 (212)
T 3rjv_A          111 LLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG---YAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT---HHHHHHHHHHHH
T ss_pred             HHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH---HHHHHHHHHHHc
Confidence            9999997    766  459999999999999    89999999999999999 7777   777778777653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.65  E-value=2.7e-07  Score=69.70  Aligned_cols=82  Identities=12%  Similarity=-0.033  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368         204 CRVYRNLMVCYNNNKQ---YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE  280 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~---y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~  280 (372)
                      ..++..+|.+++-.++   ..+|...++++|+    +||+++++++-+|.+++..|+|.+|+..++++++.+|.++.+..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~   81 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT   81 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            4678888998876665   7999999999998    99999999999999999999999999999999999999765555


Q ss_pred             HHHHHHHHH
Q psy8368         281 IDKEILKAD  289 (372)
Q Consensus       281 ~~~~l~~~~  289 (372)
                      +...+..++
T Consensus        82 i~~~I~~A~   90 (93)
T 3bee_A           82 IIESINKAK   90 (93)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.63  E-value=3.5e-08  Score=77.23  Aligned_cols=87  Identities=11%  Similarity=0.056  Sum_probs=71.6

Q ss_pred             HccCHHHHHHHHHHHHHhhccC---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHF---ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~---~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      .+|+|++|+.+++++++    +   +|++..+++.+|.+|..+|+|++|+..|+++++++|++.   .+...++.+....
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~   74 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---ALRVFYAMVLYNL   74 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH----cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHc
Confidence            46899999999999997    7   689999999999999999999999999999999999999   9999999999888


Q ss_pred             HHHHHHHHHHHHhhccCC
Q psy8368         293 QQYQKETKARCMKMFSSS  310 (372)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~  310 (372)
                      +++.++. ..+.+.+...
T Consensus        75 g~~~~A~-~~~~~al~~~   91 (117)
T 3k9i_A           75 GRYEQGV-ELLLKIIAET   91 (117)
T ss_dssp             TCHHHHH-HHHHHHHHHH
T ss_pred             CCHHHHH-HHHHHHHHhC
Confidence            8775543 4455554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.60  E-value=8e-07  Score=89.35  Aligned_cols=125  Identities=7%  Similarity=-0.043  Sum_probs=104.8

Q ss_pred             HHhccCH-HHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHh
Q psy8368         165 AFNDKNI-VSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ----------YKLTCDCASKALQF  233 (372)
Q Consensus       165 ~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~----------y~~Ai~~~~~aL~~  233 (372)
                      ..+.|.| ++|+..|.+++.+.+..               ..++++++.++.++++          |++++.+++++++ 
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~---------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-  101 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-  101 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-
Confidence            3444544 67799999999998776               7899999999999999          9999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQ--EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~--~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                         .+|.+..||+.|+.++..++  ++++|++.+.++++++|.|.   .++....-+...++...+.+-..+.++.....
T Consensus       102 ---~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~---~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          102 ---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (567)
T ss_dssp             ---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             ---hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc---cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence               99999999999999999999  77999999999999999999   99988888877766223445555555554433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.60  E-value=1.1e-07  Score=78.81  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW----------TSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~----------e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      -+++.|++|+..++++++    ++|+++.+|+++|.++..++++          ++|+..|++|++++|++.   .++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~----l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~---~A~~~   85 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYK----SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred             HHHhHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH---HHHHH
Confidence            457889999999999998    9999999999999999999875          599999999999999999   99999


Q ss_pred             HHHHHHHHHH----------HHHHHHHHHHhhccCCCC
Q psy8368         285 ILKADLGNQQ----------YQKETKARCMKMFSSSSS  312 (372)
Q Consensus       285 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  312 (372)
                      ++.+...+..          .-.+....|++.+...+.
T Consensus        86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            9999887752          233444555555554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.57  E-value=4.7e-07  Score=83.74  Aligned_cols=131  Identities=5%  Similarity=-0.104  Sum_probs=110.1

Q ss_pred             HHHHHhhHHH----Hhc---cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHH
Q psy8368         156 QELGASGKNA----FND---KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK--LTCDC  226 (372)
Q Consensus       156 ~~~k~~Gn~~----~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~--~Ai~~  226 (372)
                      ..+..++..+    ...   +++.+++..+.+++...+..               ..++++++.++.+++.|+  +++.+
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---------------y~aW~~R~~vl~~l~~~~~~~EL~~  168 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---------------HHVWSYRKWLVDTFDLHNDAKELSF  168 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcccChHHHHHH
Confidence            3455556665    444   78999999999999988776               689999999999999999  99999


Q ss_pred             HHHHHHhhccCCCCchhHHHHHHHHHHhcCC------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         227 ASKALQFASHFATKDVKLFFVWGKALIGLQE------WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       227 ~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~------~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                      |+++++    .+|.|..||..|+.++..++.      ++++++++.+++.++|+|.   .++..+..+....+.......
T Consensus       169 ~~~~i~----~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~---SaW~y~~~ll~~~~~~~~~~~  241 (306)
T 3dra_A          169 VDKVID----TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP---STWNYLLGIHERFDRSITQLE  241 (306)
T ss_dssp             HHHHHH----HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHTTCCGGGGH
T ss_pred             HHHHHH----hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc---cHHHHHHHHHHhcCCChHHHH
Confidence            999998    999999999999999999998      9999999999999999999   999988888776664433344


Q ss_pred             HHHHhhcc
Q psy8368         301 ARCMKMFS  308 (372)
Q Consensus       301 ~~~~~~~~  308 (372)
                      ....+++.
T Consensus       242 ~~~~~~~~  249 (306)
T 3dra_A          242 EFSLQFVD  249 (306)
T ss_dssp             HHHHTTEE
T ss_pred             HHHHHHHh
Confidence            44444443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.56  E-value=1.2e-06  Score=80.99  Aligned_cols=118  Identities=6%  Similarity=-0.102  Sum_probs=105.2

Q ss_pred             HHHHHHHhhHHHHhcc--CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHH----HHc---cCHHHHH
Q psy8368         154 RAQELGASGKNAFNDK--NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCY----NNN---KQYKLTC  224 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~----~kl---~~y~~Ai  224 (372)
                      ..+.+..+|..+...+  ++.+|+..+..+|...|+.               ..+++.++.++    ..+   +++.+++
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~---------------y~aW~~R~~iL~~~~~~l~~~~~~~~EL  130 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN---------------YQIWNYRQLIIGQIMELNNNDFDPYREF  130 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---------------CHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---------------HHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence            3567888999999888  9999999999999988776               57888999988    777   7899999


Q ss_pred             HHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         225 DCASKALQFASHFATKDVKLFFVWGKALIGLQEWT--SAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       225 ~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e--~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      ..|+++|+    .+|.|..||+.|+.++..++.++  ++++.+.++++++|.|.   .++.....+...+.
T Consensus       131 ~~~~~~l~----~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~---sAW~~R~~ll~~l~  194 (306)
T 3dra_A          131 DILEAMLS----SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN---SAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHHHHHHH----HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHSSG
T ss_pred             HHHHHHHH----hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcc
Confidence            99999998    99999999999999999999999  99999999999999999   88877777665543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.54  E-value=1.6e-06  Score=81.51  Aligned_cols=135  Identities=8%  Similarity=0.039  Sum_probs=102.9

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+...|..++..|+|..|...|.+++...+.....         .....+++++|.++..+|+|.+|+.++++++..
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45567788999999999999999999999887553211         122567889999999999999999999999986


Q ss_pred             hccCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFA----TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS--VRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       234 ~~~~~----p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~--~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      .+...    |....++..+|.+|..+|++++|+..+.+++.+.|...  ....+...+..+....+++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  192 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  192 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            54322    34567888999999999999999999999999988632  112455566666665555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.54  E-value=3.9e-06  Score=78.24  Aligned_cols=116  Identities=2%  Similarity=-0.132  Sum_probs=98.8

Q ss_pred             HHHHHHhhHHHHhccC----------HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC--HHH
Q psy8368         155 AQELGASGKNAFNDKN----------IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ--YKL  222 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~--y~~  222 (372)
                      .+.+..++..+...+.          +.+++..+..++...|+.               ..++++++.++.+++.  |.+
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn---------------y~aW~hR~wlL~~l~~~~~~~  128 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWAR  128 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHhccCcccHHH
Confidence            3444455555554443          788999999999887776               6899999999999994  999


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         223 TCDCASKALQFASHFATKDVKLFFVWGKALIGLQE-WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~-~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      ++.+|+++++    .+|.|..||+.++.+...+|. ++++++++.++++.+|+|.   .++.....+...+
T Consensus       129 EL~~~~k~l~----~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~---SAW~~R~~ll~~l  192 (331)
T 3dss_A          129 ELELCARFLE----ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY---SSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHh
Confidence            9999999998    999999999999999999999 6999999999999999999   8888777776655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.50  E-value=1.7e-06  Score=85.70  Aligned_cols=135  Identities=12%  Similarity=-0.048  Sum_probs=107.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|..+.+.|++++|...|.+++...+..+              ..++.+++.++.++|++++|+..+.+|++  
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--  384 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKARE--  384 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence            34566778888889999999999999998743321              24788999999999999999999999997  


Q ss_pred             ccCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368         235 SHFATKDVKLFFVWGKA-LIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS  311 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a-~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
                        ..|.+...+...+.. +..+|++++|+..|+++++..|++.   .++..+..+....++. ...+..|.+.+....
T Consensus       385 --~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~---~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          385 --DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNED-NNTRVLFERVLTSGS  456 (530)
T ss_dssp             --CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHTTTTCH-HHHHHHHHHHHHSCC
T ss_pred             --ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH---HHHHHHHHHHHhCCCH-hhHHHHHHHHHhccC
Confidence              777777777776655 4469999999999999999999999   8888888887665544 345667777665543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.48  E-value=3.5e-07  Score=69.55  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +..+...|..++..|+|++|+..|++++...+..               ..+++++|.||.++|++++|+..++++++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY---------------VGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4567889999999999999999999999997665               47899999999999999999999999997

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.48  E-value=4.2e-07  Score=76.36  Aligned_cols=111  Identities=11%  Similarity=-0.030  Sum_probs=87.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC--------------ChHHHHHHHHH------HHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT--------------NYEDQMQLEEY------LCRVYRNLMVCY  214 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~--------------~~~~~~~~~~l------~~~l~~Nla~~~  214 (372)
                      ...+...|..+...|++++|+..|++++...+ .+..              .......+...      ...+++++|.++
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~  118 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQY  118 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56788899999999999999999988876543 1100              00001111111      146899999999


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~--~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      ..+|++++|+..++++++    .+|++  ..+++.+|.++..+|++++|+..|++++.
T Consensus       119 ~~~g~~~~A~~~~~~~l~----~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          119 NQVGRDEEALELLWNILK----VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCHHHHHHHHHHHHT----TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHH----hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999997    88875  56999999999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.44  E-value=4e-06  Score=78.66  Aligned_cols=110  Identities=8%  Similarity=-0.087  Sum_probs=97.5

Q ss_pred             HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhccCCCCchh
Q psy8368         165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQFASHFATKDVK  243 (372)
Q Consensus       165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~~~~~~p~~~k  243 (372)
                      ..+....++|+..+.++|.+.+..               ..+++.++.++..++ .+++++..++.+|.    .+|.+..
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~---------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKny~  124 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAH---------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKSYQ  124 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCcHH
Confidence            344456679999999999998776               689999999999999 59999999999998    9999999


Q ss_pred             HHHHHHHHHHhc-C-CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         244 LFFVWGKALIGL-Q-EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       244 a~~r~a~a~~~l-~-~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      +|+.|+.++..+ + ++++++..+.++++++|.|.   .++....-+...+....
T Consensus       125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy---~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY---HTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH---HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcccc
Confidence            999999999998 8 99999999999999999999   88888777776666554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.44  E-value=2.8e-06  Score=67.21  Aligned_cols=83  Identities=10%  Similarity=0.038  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHccCHHH---HHHHHHHHHHhhccCC-C-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccH
Q psy8368         204 CRVYRNLMVCYNNNKQYKL---TCDCASKALQFASHFA-T-KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVR  278 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~---Ai~~~~~aL~~~~~~~-p-~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~  278 (372)
                      ....+|+|.|+.+..+...   +|..++..++    .+ | .+...+|.+|.+|+++|+|+.|+.+++.+|+++|+|.  
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~----~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~--  108 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN--  108 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH--
Confidence            4678899999999887666   9999999886    44 5 5788999999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8368         279 AEIDKEILKADLGNQ  293 (372)
Q Consensus       279 ~~~~~~l~~~~~~~~  293 (372)
                       .+..+...+..++.
T Consensus       109 -QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A          109 -QAKELERLIDKAMK  122 (126)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHH
Confidence             88877777766654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.44  E-value=8.2e-07  Score=81.08  Aligned_cols=114  Identities=7%  Similarity=-0.077  Sum_probs=90.5

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-------------CCChHHHHHHHHH------HHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-------------VTNYEDQMQLEEY------LCRVYRNLMVCY  214 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-------------~~~~~~~~~~~~l------~~~l~~Nla~~~  214 (372)
                      ....+...|..+...|++++|+..|.+++...+...             ....+....+...      ...+++++|.+|
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            367899999999999999999999998876533110             0000011111111      146899999999


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~--~ka~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      ...|++++|+..+.++++    .+|++  ..++.+++.++..+|+.++|...|++++..
T Consensus       230 ~~~g~~~~A~~~l~~~l~----~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLR----XDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHh----cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            999999999999999998    89998  889999999999999999999999999863

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.42  E-value=3.2e-06  Score=68.36  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhcc
Q psy8368         161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .|..+...+.+.+|+..|++|.+.-  .               ...++|+|.+|..    .+++.+|+.+++++.+    
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----   89 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--S---------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG----   89 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc----
Confidence            7888888888999999999998762  1               5788999999999    8999999999999996    


Q ss_pred             CCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhc
Q psy8368         237 FATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~  272 (372)
                      .  .++.+++++|.+|..    .+++++|+.+|++|.+..
T Consensus        90 ~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           90 L--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             C--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            3  789999999999999    899999999999999874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.38  E-value=1e-06  Score=80.19  Aligned_cols=134  Identities=13%  Similarity=-0.022  Sum_probs=104.2

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      .......+..+...|+|.+|...|..++..-+..               . .++++|.++++.++|.+|+.+++.++.  
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~--  163 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEH---------------L-VAWMKAVVYGAAERWTDVIDQVKSAGK--  163 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGG--
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhc--
Confidence            3445566888889999999999998777543221               4 788999999999999999999998885  


Q ss_pred             ccCC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368         235 SHFA-TKD-VKLFFVWGKALIGLQEWTSAIKHLKTARKLA--AK-DSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS  309 (372)
Q Consensus       235 ~~~~-p~~-~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~--p~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
                        .. |.. ..+++.+|.++..+|++++|+..|++++.-.  |. ..   ++...++.+...++.. ...+..|++++..
T Consensus       164 --~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~---da~~~~glaL~~lGr~-deA~~~l~~a~a~  237 (282)
T 4f3v_A          164 --WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR---AIAWYLAMARRSQGNE-SAAVALLEWLQTT  237 (282)
T ss_dssp             --CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH---HHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred             --cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH---HHHHHHHHHHHHcCCH-HHHHHHHHHHHhc
Confidence              32 221 4589999999999999999999999998544  54 44   6888888888888766 4566777777765


Q ss_pred             CCC
Q psy8368         310 SSS  312 (372)
Q Consensus       310 ~~~  312 (372)
                      .+.
T Consensus       238 ~P~  240 (282)
T 4f3v_A          238 HPE  240 (282)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.37  E-value=4e-06  Score=78.70  Aligned_cols=135  Identities=12%  Similarity=-0.035  Sum_probs=101.2

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      -.+..+...|..++..|++..|+..+.+++...+..   +.       .....+++++|.+|...|+|++|+..+.+++.
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   81 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WF-------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   81 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---ch-------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            345667788999999999999999999999876321   11       12356889999999999999999999999998


Q ss_pred             hhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----ccHHHHHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-----SVRAEIDKEILKADLGNQQYQK  297 (372)
Q Consensus       233 ~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~-----~~~~~~~~~l~~~~~~~~~~~~  297 (372)
                      +.+.....  ...+++.+|.++..+|++++|+..+++++.+.+..     +....+...++.+....++..+
T Consensus        82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  153 (373)
T 1hz4_A           82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  153 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence            55433222  23457899999999999999999999999986421     2122455666666655555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.36  E-value=1.9e-06  Score=84.89  Aligned_cols=117  Identities=10%  Similarity=-0.048  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|..|..+|+|++|+..|+++|.+....-.++.       ......++|+|..|..+|+|++|+..+++||.
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN-------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46788899999999999999999999999998755433222       12367899999999999999999999999998


Q ss_pred             hhc-cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         233 FAS-HFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       233 ~~~-~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +.. .+.|++   .+.+-.++.++..++.|.+|...|.++.+-.-+|.
T Consensus       422 i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          422 ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            754 345554   55667899999999999999999999977654444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.36  E-value=6.3e-06  Score=76.85  Aligned_cols=120  Identities=7%  Similarity=-0.003  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhHHHH---hccCHH-HHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC---------
Q psy8368         153 KRAQELGASGKNAF---NDKNIV-SAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ---------  219 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~---~~g~~~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~---------  219 (372)
                      +.+..++..-+..+   +.|.|. +|+..+.++|.+.|..               .++++.++.++..++.         
T Consensus        24 ~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~---------------ytaWn~Rr~iL~~l~~~~~~~~~~~   88 (331)
T 3dss_A           24 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAA   88 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHhcccccchhhhH
Confidence            44445554444433   567766 7999999999998776               6888999999988876         


Q ss_pred             -HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         220 -YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ--EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       220 -y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~--~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                       +.+++.+++.+|.    .+|.|..+|+.|+.++..++  .+++++..+.++++++|.|.   .++....-+....+.
T Consensus        89 ~l~~EL~~~~~~L~----~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy---~AW~~R~~vl~~l~~  159 (331)
T 3dss_A           89 LVKAELGFLESCLR----VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAV  159 (331)
T ss_dssp             HHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCc
Confidence             7999999999998    99999999999999999999  49999999999999999999   888777777665544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.35  E-value=3.4e-06  Score=79.17  Aligned_cols=117  Identities=4%  Similarity=-0.064  Sum_probs=105.8

Q ss_pred             HHHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN-K-QYKLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl-~-~y~~Ai~~~~~aL  231 (372)
                      .+.+..++..+...+ .+++++..+..+|...++.               ..+++.++.++.++ + ++.+++.+|+++|
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            467778888998888 5999999999999988776               68999999999998 8 9999999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQEWT--------SAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e--------~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      +    .+|.|..||+.|+.++..++.++        ++++.+.++++++|.|.   .++.....+...+.
T Consensus       153 ~----~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~---SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          153 L----PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN---SAWGWRWYLRVSRP  215 (349)
T ss_dssp             S----SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHTTST
T ss_pred             H----hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcc
Confidence            7    99999999999999999999888        99999999999999999   88888877765554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.31  E-value=4.6e-06  Score=82.61  Aligned_cols=103  Identities=15%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             HHHHHHhhHHHHh-------ccCHH-------HHHHHHHHHHH-hhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy8368         155 AQELGASGKNAFN-------DKNIV-------SAVRRYRDAVK-LLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ  219 (372)
Q Consensus       155 ~~~~k~~Gn~~~~-------~g~~~-------~A~~~y~~al~-~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~  219 (372)
                      ...+...|..+..       .|++.       +|...|.+|+. +.+..               ..++.++|..+.++|+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------------~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCC
Confidence            4566677777775       68877       89999999997 55544               6899999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         220 YKLTCDCASKALQFASHFATKDV-KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       220 y~~Ai~~~~~aL~~~~~~~p~~~-ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +++|+..++++++    ++|.++ .+|..++.++..+|++++|+..|.+|++..|.+.
T Consensus       337 ~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~  390 (530)
T 2ooe_A          337 YEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  390 (530)
T ss_dssp             HHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred             HHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence            9999999999998    888885 6999999999999999999999999999988876

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.29  E-value=8.4e-06  Score=79.88  Aligned_cols=78  Identities=13%  Similarity=-0.053  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCC-
Q psy8368         204 CRVYRNLMVCYNN----NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAK-  274 (372)
Q Consensus       204 ~~l~~Nla~~~~k----l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~-  274 (372)
                      ...++++|.+|..    .+++++|+.+++++++    .  .++.+++++|.+|..    .+++++|+..|++|++.+|+ 
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~----~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  436 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE----Q--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL  436 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh----C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence            4678899999999    8999999999999986    3  478899999999998    89999999999999999954 


Q ss_pred             --CccHHHHHHHHHHHHH
Q psy8368         275 --DSVRAEIDKEILKADL  290 (372)
Q Consensus       275 --~~~~~~~~~~l~~~~~  290 (372)
                        +.   .+...+..+..
T Consensus       437 ~~~~---~a~~~l~~~~~  451 (490)
T 2xm6_A          437 FGTE---NRNITEKKLTA  451 (490)
T ss_dssp             HHHH---HHHHHHTTSCH
T ss_pred             cCCH---HHHHHHHhcCH
Confidence              66   67776666543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.29  E-value=3.9e-06  Score=64.86  Aligned_cols=78  Identities=18%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         222 LTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKA  301 (372)
Q Consensus       222 ~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  301 (372)
                      +|+..++++++    .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .++..++.+....+++.+ ...
T Consensus         3 ~a~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~-A~~   74 (115)
T 2kat_A            3 AITERLEAMLA----QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---VAWKWLGKTLQGQGDRAG-ARQ   74 (115)
T ss_dssp             CHHHHHHHHHT----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHH-HHH
T ss_pred             HHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHcCCHHH-HHH
Confidence            57899999997    9999999999999999999999999999999999999999   999999999888776654 334


Q ss_pred             HHHhhc
Q psy8368         302 RCMKMF  307 (372)
Q Consensus       302 ~~~~~~  307 (372)
                      .|.+.+
T Consensus        75 ~~~~al   80 (115)
T 2kat_A           75 AWESGL   80 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=98.22  E-value=6.3e-06  Score=79.76  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP  107 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip  107 (372)
                      .+..||.|+|+|++.. + |+.|+++..  . ++.+.+|++.  + |+.+|.||++|+...|.++.              
T Consensus       154 ~a~~gD~V~id~~~~~-d-G~~~~~~~~--~-~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN-E-EGKKLTSRE--Y-EYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEEC-T-TSCEEEEEE--E-EEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------
T ss_pred             ccCCCCEEEEEEEEEE-C-CEECcCCCC--C-CeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------
Confidence            4789999999999874 4 458887643  4 7888899877  4 99999999999999999853              


Q ss_pred             CCCcEEEEEEEEeeecCccccccccccccccccCcc-CchhHHHHHHHH
Q psy8368         108 AKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQV-EEPAFAKVLKRA  155 (372)
Q Consensus       108 ~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~  155 (372)
                      +|.+..|.|+|.+|+     ...+|++.+.|.-... +-.+.++....+
T Consensus       212 aGk~a~F~VtV~~Ik-----~~~lPEldDEfak~~~~~~~tleelk~~i  255 (433)
T 3gty_X          212 EGKKYTYKLEVEEVY-----KRTLPEIGDELAKSVNNEFETLEQLKESL  255 (433)
T ss_dssp             TTEEEEEEEEEEEEE-----EECCCCSSHHHHHTTCSSCCSHHHHHHHH
T ss_pred             CCCeEEEEEEEEEEE-----EecCCcccHHHHHHhCCCCCCHHHHHHHH
Confidence            466899999999998     2345666666553332 233444444433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.21  E-value=2.5e-05  Score=64.49  Aligned_cols=124  Identities=10%  Similarity=-0.014  Sum_probs=92.3

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+++....++..+.|+.|+..+..++.+.+..+..-..      .....++..+|.+++..++|.+|...|++||+...
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            356778888999999999999999999887554422111      12356888999999999999999999999987654


Q ss_pred             cCC---------------------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         236 HFA---------------------TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       236 ~~~---------------------p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      .+.                     +......|++|.||.+++++.+|+..++..    |.-.+...+...|+++.
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I----p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI----PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS----CGGGCCHHHHHHHHHHC
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC----CchhcCHHHHHHHHHHh
Confidence            331                     112368899999999999999999887654    32222226777777654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.8e-05  Score=75.47  Aligned_cols=124  Identities=14%  Similarity=0.054  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-----------------CCh-HHHHH-HH------------H
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-----------------TNY-EDQMQ-LE------------E  201 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-----------------~~~-~~~~~-~~------------~  201 (372)
                      .....+...|+.|+..|+|++|+..|.+++.+.+....                 ... +.... ..            .
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            44566889999999999999999999999887654321                 000 00000 00            1


Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT--KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p--~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++..++.++|.+|..+|+|.+|+..+.+++......+.  ..+.++...|.+|..+|+|++|...|++++.+.+...
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence            22457778888888888888888888888875543332  3556788888888888888888888888888876443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.13  E-value=4.2e-05  Score=74.86  Aligned_cols=107  Identities=14%  Similarity=0.016  Sum_probs=59.0

Q ss_pred             HHHHHHhhHHHHh----ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHH
Q psy8368         155 AQELGASGKNAFN----DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCDC  226 (372)
Q Consensus       155 ~~~~k~~Gn~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~~  226 (372)
                      +..+...|..++.    .+++.+|+..|.+|+..-  .               ...++++|.+|..    .+++++|+.+
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  137 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L---------------PQAQQNLGVMYHEGNGVKVDKAESVKW  137 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            3445556666666    666666666666665431  0               2345556666655    5566666666


Q ss_pred             HHHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368         227 ASKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD  289 (372)
Q Consensus       227 ~~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~  289 (372)
                      ++++++      .+++.+++.+|.+|..    .+++++|+..|+++++.  ++.   .+...|..+.
T Consensus       138 ~~~a~~------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~---~a~~~Lg~~y  193 (490)
T 2xm6_A          138 FRLAAE------QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV---WSCNQLGYMY  193 (490)
T ss_dssp             HHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH---HHHHHHHHHH
T ss_pred             HHHHHH------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH---HHHHHHHHHH
Confidence            666554      2455566666666655    55566666666665543  344   4444444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.06  E-value=3.5e-05  Score=61.15  Aligned_cols=84  Identities=10%  Similarity=0.016  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhhccCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368         204 CRVYRNLMVCYNNNKQ---YKLTCDCASKALQFASHFAT-KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA  279 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~---y~~Ai~~~~~aL~~~~~~~p-~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~  279 (372)
                      ....+|.|.|+.+-.+   ..++|..++..++    .+| .....+|-+|.+|.++|+|+.|+.+.+.+|+++|+|.   
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~----~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~---  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH---
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH---
Confidence            4678899999998765   5678999999887    567 4678999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8368         280 EIDKEILKADLGNQQ  294 (372)
Q Consensus       280 ~~~~~l~~~~~~~~~  294 (372)
                      .+..+...+..++.+
T Consensus       113 QA~~Lk~~Ie~ki~k  127 (134)
T 3o48_A          113 QVGALKSMVEDKIQK  127 (134)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888777776654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=6.3e-05  Score=71.69  Aligned_cols=103  Identities=11%  Similarity=-0.095  Sum_probs=74.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|+.++..|+|.+|+..+.+++..+......         .....++++++.+|..+|+|.+|...+++++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            4456678888888888888888888888876554321         2467899999999999999999999999999843


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                          +.........+..+..+|.+..+...|..|..
T Consensus       206 ----~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          206 ----NSIYCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             ----HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             ----hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence                33223344556666666665555555655543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.02  E-value=7.1e-05  Score=60.13  Aligned_cols=83  Identities=10%  Similarity=0.010  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhhccCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368         204 CRVYRNLMVCYNNNKQ---YKLTCDCASKALQFASHFAT-KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA  279 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~---y~~Ai~~~~~aL~~~~~~~p-~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~  279 (372)
                      ....+|.|.|+.+-.+   -.++|..++..++    .+| .....+|.+|.+|+++|+|++|+.+.+.+|+++|+|.   
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~---  111 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---  111 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH---
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH---
Confidence            4678899999998765   4578889999887    566 4777999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHHHH
Q psy8368         280 EIDKEILKADLGNQ  293 (372)
Q Consensus       280 ~~~~~l~~~~~~~~  293 (372)
                      ++..+...+..++.
T Consensus       112 QA~~Lk~~Ie~~i~  125 (144)
T 1y8m_A          112 QVGALKSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777776665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.97  E-value=5.3e-05  Score=81.78  Aligned_cols=110  Identities=15%  Similarity=0.063  Sum_probs=89.2

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|+.++..|+|.+|+..|.+|-                       .|..+|.||.++|+|++|++.+.+|..   
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n--- 1249 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANS--- 1249 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCC---
Confidence            356679999999999999999998852                       466788999999999999999988864   


Q ss_pred             cCCC-------------------------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         236 HFAT-------------------------KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       236 ~~~p-------------------------~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                       ..+                         .++.-+..++..|...|.|++|+..|++++.++|.+.   .+..+|..+..
T Consensus      1250 -~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~---gmftELaiLya 1325 (1630)
T 1xi4_A         1250 -TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM---GMFTELAILYS 1325 (1630)
T ss_pred             -HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh---HHHHHHHHHHH
Confidence             211                         1444566888889999999999999999999999998   88888888876


Q ss_pred             HHHHH
Q psy8368         291 GNQQY  295 (372)
Q Consensus       291 ~~~~~  295 (372)
                      +.+-.
T Consensus      1326 Ky~pe 1330 (1630)
T 1xi4_A         1326 KFKPQ 1330 (1630)
T ss_pred             hCCHH
Confidence            65433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.96  E-value=5.5e-05  Score=60.96  Aligned_cols=94  Identities=16%  Similarity=0.049  Sum_probs=79.8

Q ss_pred             ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368         168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV  247 (372)
Q Consensus       168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r  247 (372)
                      .+++.+|+..|++|.+.-..                 ...  +|.+|...+.+++|+.+++++.+    .  .++.++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~-----------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~----~--g~~~a~~~   62 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM-----------------FGC--LSLVSNSQINKQKLFQYLSKACE----L--NSGNGCRF   62 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT-----------------THH--HHHHTCTTSCHHHHHHHHHHHHH----T--TCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH-----------------hhh--HHHHHHcCCCHHHHHHHHHHHHc----C--CCHHHHHH
Confidence            36789999999999876421                 122  89999999999999999999996    3  78999999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         248 WGKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       248 ~a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      +|.+|..    .+++++|+.+|++|.+.  .++   .+...|..+...
T Consensus        63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~---~a~~~Lg~~y~~  105 (138)
T 1klx_A           63 LGDFYENGKYVKKDLRKAAQYYSKACGL--NDQ---DGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCH---HHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHHHHcC--CCH---HHHHHHHHHHHC
Confidence            9999998    89999999999999987  677   788888877655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.95  E-value=6.5e-05  Score=73.04  Aligned_cols=122  Identities=11%  Similarity=0.006  Sum_probs=80.1

Q ss_pred             HHHHhhHHHHhcc---CHHHHHHHHHHHHHhhhhccC----------------CChHH-HHHHH---HHHHHHHHHHHHH
Q psy8368         157 ELGASGKNAFNDK---NIVSAVRRYRDAVKLLINTQV----------------TNYED-QMQLE---EYLCRVYRNLMVC  213 (372)
Q Consensus       157 ~~k~~Gn~~~~~g---~~~~A~~~y~~al~~~~~~~~----------------~~~~~-~~~~~---~l~~~l~~Nla~~  213 (372)
                      .+...|..+...|   ++.+|+..|++++..-+....                .+.+. ..-+.   .-....++|+|.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5677888898889   999999999998765322110                01100 00000   1113456777777


Q ss_pred             -H--HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         214 -Y--NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ-----EWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       214 -~--~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~-----~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                       |  ...+++.+|+.+++++++      ++++.|++++|.+|. .|     ++++|+.+|++|.   |+++   .+...|
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~---~A~~~L  324 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRA------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV---AADYYL  324 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH---HHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH---HHHHHH
Confidence             3  456777778877777775      347777888887777 44     7788888888777   7777   777777


Q ss_pred             HHHHHH
Q psy8368         286 LKADLG  291 (372)
Q Consensus       286 ~~~~~~  291 (372)
                      +.+...
T Consensus       325 g~~y~~  330 (452)
T 3e4b_A          325 GQIYRR  330 (452)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            766654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.95  E-value=6e-05  Score=73.33  Aligned_cols=75  Identities=20%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCC
Q psy8368         204 CRVYRNLMVCYNNNK-----QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~-----~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~  274 (372)
                      ...++|+|.+|. .|     ++.+|+.+++++.       +.++.|++++|.+|..    ..++++|+.+|++|.+  +.
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g  352 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NG  352 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TT
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hC
Confidence            467899999998 55     9999999999884       7899999999999987    4599999999999987  45


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy8368         275 DSVRAEIDKEILKADLG  291 (372)
Q Consensus       275 ~~~~~~~~~~l~~~~~~  291 (372)
                      ++   .+...|+.+...
T Consensus       353 ~~---~A~~~Lg~~y~~  366 (452)
T 3e4b_A          353 QN---SADFAIAQLFSQ  366 (452)
T ss_dssp             CT---THHHHHHHHHHS
T ss_pred             hH---HHHHHHHHHHHh
Confidence            66   778888887764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.85  E-value=8.7e-05  Score=60.74  Aligned_cols=79  Identities=10%  Similarity=-0.102  Sum_probs=66.0

Q ss_pred             HHHHHHhhHHHHhcc---CHHHHHHHHHHHHHhh-hhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDK---NIVSAVRRYRDAVKLL-INTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      .+..++.|..+.+..   ++++|+..+...++.. +.              ....+++|+|..|+++++|.+|+.+|+.+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            578889999999977   7779999999988864 21              12578999999999999999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHH
Q psy8368         231 LQFASHFATKDVKLFFVWGKA  251 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a  251 (372)
                      |+    ++|+|..|..-+-.+
T Consensus        98 L~----ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           98 LQ----TEPQNNQAKELERLI  114 (152)
T ss_dssp             HH----HCTTCHHHHHHHHHH
T ss_pred             Hh----cCCCCHHHHHHHHHH
Confidence            98    999998887654443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.81  E-value=0.00024  Score=76.88  Aligned_cols=99  Identities=10%  Similarity=0.041  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      +++.....+...|..+.+.|+|.+|+..|.+|=     .               ...|.+++.|+.++|+|++|+.++..
T Consensus      1100 ervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd-----D---------------~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A         1100 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----D---------------PSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred             HhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-----C---------------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            444556778889999999999999999997761     1               35667778888888888888887766


Q ss_pred             HHHhhc-----------------------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368         230 ALQFAS-----------------------HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA  268 (372)
Q Consensus       230 aL~~~~-----------------------~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a  268 (372)
                      |.+...                       .++..+...++++|.++...|+|++|+..|.+|
T Consensus      1160 Ark~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1160 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            653110                       012223445666777777777777777777665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.74  E-value=0.00038  Score=65.36  Aligned_cols=117  Identities=11%  Similarity=-0.012  Sum_probs=82.4

Q ss_pred             HHHHHHhhHHHHhc---cCHHHHHHHHHHHHHhhhhccC----------------CCh-HHHHHHHH-H-----------
Q psy8368         155 AQELGASGKNAFND---KNIVSAVRRYRDAVKLLINTQV----------------TNY-EDQMQLEE-Y-----------  202 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~---g~~~~A~~~y~~al~~~~~~~~----------------~~~-~~~~~~~~-l-----------  202 (372)
                      +-.+.-+|..++..   ..+.+|+.+|.+|++..|....                ++. .....+.. +           
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            44556677777754   3468999999999998765421                111 11111110 0           


Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         203 LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       203 ~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ...++.-+|..++..|++++|+..+++|+.    ++| +.-+|.-+|.++...|++++|++.|.+|+.++|...
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~----Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGID----LEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            022444466677778999999999999997    775 467888889999999999999999999999999765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.74  E-value=0.00011  Score=70.72  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      ..+.+.+.++..+|+|..|..+... |.    .+|   .-+..+..+|...|++++|+..|++++.+++.+.   .+..+
T Consensus       178 ~~Wk~v~~aCv~~~ef~lA~~~~l~-L~----~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~---~~fte  246 (449)
T 1b89_A          178 RTWKEVCFACVDGKEFRLAQMCGLH-IV----VHA---DELEELINYYQDRGYFEELITMLEAALGLERAHM---GMFTE  246 (449)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTTTT-TT----TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH---HHHHH
T ss_pred             hhHHHHHHHHHHcCcHHHHHHHHHH-HH----hCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH---HHHHH
Confidence            4444555555555555555443332 21    233   3344677889999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHH
Q psy8368         285 ILKADLGNQQY  295 (372)
Q Consensus       285 l~~~~~~~~~~  295 (372)
                      |+.+..+.+-.
T Consensus       247 l~il~~ky~p~  257 (449)
T 1b89_A          247 LAILYSKFKPQ  257 (449)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHhcCHH
Confidence            98887766433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.73  E-value=0.00014  Score=66.94  Aligned_cols=98  Identities=7%  Similarity=-0.122  Sum_probs=75.4

Q ss_pred             hhHHHHhcc--CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC-
Q psy8368         161 SGKNAFNDK--NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF-  237 (372)
Q Consensus       161 ~Gn~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~-  237 (372)
                      .|...+..|  ++.+|...|+++....+..    . .        ..++.|   |++++|+|++|...++.+++..+.. 
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~-~--------~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTW----K-T--------QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----H-H--------HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCc----c-c--------HHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            343355445  8999999999877654321    0 0        245555   9999999999999999777521111 


Q ss_pred             -----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         238 -----ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       238 -----~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                           +|+|+.++.++..+...+|+  +|.+++.++.+++|+++
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence                 58999999999999999997  99999999999999999

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.69  E-value=0.00023  Score=64.38  Aligned_cols=68  Identities=12%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCC
Q psy8368         204 CRVYRNLMVCYNNN-----KQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGL-QEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       204 ~~l~~Nla~~~~kl-----~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l-~~~e~A~~~~~~al~l~p~~  275 (372)
                      ..+|.-+|..|.+.     |+.++|..++++||+    ++|+ +..+++..|..+... +++++|...+++|+..+|..
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~----LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR----YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH----HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH----hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            56899999999996     999999999999998    9997 599999999999885 99999999999999998874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.68  E-value=0.00019  Score=69.52  Aligned_cols=84  Identities=7%  Similarity=-0.055  Sum_probs=68.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|..|..+|+|++|+.+|+++|.+....-.++..       .....++|+|..|..+|+|++|+..+++||+
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-------~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-------NVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            457888899999999999999999999999987654333221       2267899999999999999999999999998


Q ss_pred             hhc-cCCCCchh
Q psy8368         233 FAS-HFATKDVK  243 (372)
Q Consensus       233 ~~~-~~~p~~~k  243 (372)
                      +.. .+.|+++.
T Consensus       411 i~~~~lG~~Hp~  422 (433)
T 3qww_A          411 IMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHTCTTCHH
T ss_pred             HHHHHcCCCChH
Confidence            764 35666553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.61  E-value=0.00023  Score=68.78  Aligned_cols=96  Identities=5%  Similarity=-0.099  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|..|..+|+|++|+..|+++|.+....-.++.       ......++|+|..|..+|+|++|+..+.+|++
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45778889999999999999999999999998755432222       12367899999999999999999999999998


Q ss_pred             hhc-cCCCCch---hHHHHHHHHHHhc
Q psy8368         233 FAS-HFATKDV---KLFFVWGKALIGL  255 (372)
Q Consensus       233 ~~~-~~~p~~~---ka~~r~a~a~~~l  255 (372)
                      +.. .+.|+++   .++-+++.++..+
T Consensus       400 i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          400 IMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            764 3566643   3455566666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.53  E-value=0.00074  Score=62.07  Aligned_cols=125  Identities=6%  Similarity=-0.098  Sum_probs=89.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|..+...|++++|+..+.++|...+.   ...          ..++.-++.+|+++|+.+.|.+.+++..+   
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~----------lea~~l~vqi~L~~~r~d~A~k~l~~~~~---  164 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGT----------TELLLLAIEVALLNNNVSTASTIFDNYTN---  164 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---
Confidence            33467899999999999999999999765430   111          56788889999999999999999999886   


Q ss_pred             cCCCC----chhHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         236 HFATK----DVKLFFVWGKA--LIGLQ--EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKA  301 (372)
Q Consensus       236 ~~~p~----~~ka~~r~a~a--~~~l~--~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  301 (372)
                       .+|+    +-..+..++.+  .+..|  ++.+|...|+.+....|+..   .....+. +...++++.++++.
T Consensus       165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~---~~~lLln-~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK---TQLGLLN-LHLQQRNIAEAQGI  233 (310)
T ss_dssp             -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH---HHHHHHH-HHHHHTCHHHHHHH
T ss_pred             -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc---cHHHHHH-HHHHcCCHHHHHHH
Confidence             7773    33445555544  66556  99999999999888888633   2223333 55666666555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.47  E-value=0.0011  Score=49.50  Aligned_cols=67  Identities=10%  Similarity=-0.047  Sum_probs=57.3

Q ss_pred             HHHHHHhhHHHHhccC---HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKN---IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      +..+...|..++..++   ..+|...+.+|+...+..               ...+..+|..+++.|+|.+|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566677888865555   799999999999998776               6888899999999999999999999999


Q ss_pred             HhhccCCCC
Q psy8368         232 QFASHFATK  240 (372)
Q Consensus       232 ~~~~~~~p~  240 (372)
                      +    .+|.
T Consensus        71 ~----~~p~   75 (93)
T 3bee_A           71 D----SNDP   75 (93)
T ss_dssp             T----CCCT
T ss_pred             h----hCCC
Confidence            7    6666

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.37  E-value=0.0006  Score=56.28  Aligned_cols=96  Identities=19%  Similarity=0.100  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh--------HHHH-H-HHHHHHHHHHHHHHHHHHccCHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY--------EDQM-Q-LEEYLCRVYRNLMVCYNNNKQYKL  222 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--------~~~~-~-~~~l~~~l~~Nla~~~~kl~~y~~  222 (372)
                      ..++.+.-.|+.+|.+++|..|...|++||+.....+....        .... . -...-..+.+.+|.||++++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            45677888999999999999999999999988653211100        0000 0 000014688899999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Q psy8368         223 TCDCASKALQFASHFATKDVKLFFVWGKALI  253 (372)
Q Consensus       223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~  253 (372)
                      |+...+.+-     .....++...-+|+.|.
T Consensus       141 Ai~~Le~Ip-----~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          141 AIAILDGIP-----SRQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHHTSC-----GGGCCHHHHHHHHHHCC
T ss_pred             HHHHHhcCC-----chhcCHHHHHHHHHHhc
Confidence            999877543     23457777777777653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.22  E-value=0.0074  Score=57.34  Aligned_cols=111  Identities=9%  Similarity=-0.120  Sum_probs=91.8

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc------CCC-hHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ------VTN-YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCAS  228 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~------~~~-~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~  228 (372)
                      ..+...|......|+...|...+.+|+.++....      ..| ......+.+++..+...++.+++.+|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3444555666678899999999999999874432      122 234567778888899999999999999999999999


Q ss_pred             HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368         229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK  270 (372)
Q Consensus       229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~  270 (372)
                      .++.    .+|-+-.++..+-.||...|+..+|+..|+++.+
T Consensus       196 ~~~~----~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTF----EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHH----HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9997    9999999999999999999999999999998754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.15  E-value=0.0008  Score=64.82  Aligned_cols=115  Identities=13%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...|+.++..|.|++|...|.++                       ..+.++|.|+.++|+|++|+..+.++.    
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----  175 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKAN----  175 (449)
T ss_dssp             --------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHcC----
Confidence            38889999999999999999999865                       247789999999999999999999882    


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                           +++.|-....++..+|+|+.|..+... +.++|++.      ..+..+..+.+...+ ....+.+.++..
T Consensus       176 -----~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l------~~lv~~Yek~G~~eE-ai~lLe~aL~le  237 (449)
T 1b89_A          176 -----STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL------EELINYYQDRGYFEE-LITMLEAALGLE  237 (449)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH------HHHHHHHHHTTCHHH-HHHHHHHHTTST
T ss_pred             -----CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH------HHHHHHHHHCCCHHH-HHHHHHHHhCCc
Confidence                 578899999999999999999777764 33555443      235455555554433 234444444433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.86  E-value=0.006  Score=48.01  Aligned_cols=78  Identities=9%  Similarity=-0.134  Sum_probs=53.2

Q ss_pred             HHHHHhhHHHHhccCHHH---HHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVS---AVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ...++.|..+.+..+...   ++..+...+..-      .+       .....+++.+|..++++|+|.+|+.+|+..|+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~------~p-------~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SK-------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------Cc-------chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            445556666665554444   444444433321      00       12367899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGK  250 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~  250 (372)
                          .+|+|..|.--+..
T Consensus       103 ----~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A          103 ----TEPQNNQAKELERL  116 (126)
T ss_dssp             ----HCTTCHHHHHHHHH
T ss_pred             ----hCCCCHHHHHHHHH
Confidence                99999887654433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.55  E-value=0.029  Score=44.36  Aligned_cols=79  Identities=8%  Similarity=-0.049  Sum_probs=55.4

Q ss_pred             HHHHHHhhHHHHhccC---HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKN---IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ....++.|..+.+..+   ...++..+...++.-+.              .+..|++-+|..++++|+|.+|+.+|+.+|
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--------------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--------------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455666666665544   33455555554443211              126789999999999999999999999999


Q ss_pred             HhhccCCCCchhHHHHHHHH
Q psy8368         232 QFASHFATKDVKLFFVWGKA  251 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a  251 (372)
                      +    .+|+|..|.--+..+
T Consensus       106 ~----~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A          106 E----HERNNKQVGALKSMV  121 (134)
T ss_dssp             T----TCTTCHHHHHHHHHH
T ss_pred             h----hCCCCHHHHHHHHHH
Confidence            8    999998876554433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.53  E-value=0.031  Score=53.05  Aligned_cols=103  Identities=12%  Similarity=-0.032  Sum_probs=84.1

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC-C
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF-A  238 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~-~  238 (372)
                      ..|..|+..|+|.+|+..+.+.++.+....   +      ..+...++......|..++++.++...+++|......+ .
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLD---D------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---C------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccc---c------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            578999999999999999999999886531   1      24557889999999999999999999999999876665 2


Q ss_pred             CCchhH--HHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q psy8368         239 TKDVKL--FFVWGKALI-GLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       239 p~~~ka--~~r~a~a~~-~l~~~e~A~~~~~~al~l  271 (372)
                      |....|  ..--|..|+ ..++|..|..+|-.+++-
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            333344  445689999 899999999999999753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.50  E-value=0.028  Score=45.02  Aligned_cols=77  Identities=8%  Similarity=-0.019  Sum_probs=54.2

Q ss_pred             HHHHHHhhHHHHhccCH---HHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNI---VSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ....++.+..+.+..+-   ..++..+...++.-+.              .+..|++.+|..++++|+|.+|+.+|+..|
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--------------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL  104 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF  104 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--------------THHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34556666666665543   3455555554442111              125789999999999999999999999999


Q ss_pred             HhhccCCCCchhHHHHHH
Q psy8368         232 QFASHFATKDVKLFFVWG  249 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a  249 (372)
                      +    .+|+|..|.--+.
T Consensus       105 ~----~eP~n~QA~~Lk~  118 (144)
T 1y8m_A          105 E----HERNNKQVGALKS  118 (144)
T ss_dssp             H----TCCCCHHHHHHHH
T ss_pred             h----cCCCcHHHHHHHH
Confidence            8    9999988765443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.44  E-value=0.1  Score=53.28  Aligned_cols=144  Identities=13%  Similarity=0.025  Sum_probs=92.0

Q ss_pred             HhhHHHHhccCHHHHHHHHHHHHHhhhhcc------CC-ChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQ------VT-NYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~------~~-~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+......|+++.|...|.+++..++...      .+ +++....+..-...++...+.+..+.+..+.|...+.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444556777777777777776542100      01 11111111222234677777778888999999999999997


Q ss_pred             hhccC-CCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         233 FASHF-ATKDVKLFFVWGKALIGLQ-EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       233 ~~~~~-~p~~~ka~~r~a~a~~~l~-~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                          . .+...+.|...|..-...+ +++.|...|+++++..|++.   .++..+.......++ ....|..|.+.+...
T Consensus       463 ----~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~---~~w~~y~~fe~~~~~-~~~AR~lferal~~~  534 (679)
T 4e6h_A          463 ----LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG---EYINKYLDFLIYVNE-ESQVKSLFESSIDKI  534 (679)
T ss_dssp             ----TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHTC-HHHHHHHHHHHTTTS
T ss_pred             ----hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch---HHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence                3 3345677777777766665 48999999999999999998   776555555444332 345566677666554


Q ss_pred             C
Q psy8368         311 S  311 (372)
Q Consensus       311 ~  311 (372)
                      .
T Consensus       535 ~  535 (679)
T 4e6h_A          535 S  535 (679)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.32  E-value=0.0085  Score=54.21  Aligned_cols=66  Identities=8%  Similarity=-0.038  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHHHH
Q psy8368         219 QYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGL-----QEWTSAIKHLKTARKLAAKD-SVRAEIDKEILKADL  290 (372)
Q Consensus       219 ~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l-----~~~e~A~~~~~~al~l~p~~-~~~~~~~~~l~~~~~  290 (372)
                      ....|....++|++    +||+  +..||.-+|..|..+     |+.+.|..+|++|++++|+. .   .++..++....
T Consensus       178 ~l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~  250 (301)
T 3u64_A          178 TVHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP---DHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHH
Confidence            47899999999998    9999  677999999999996     99999999999999999975 7   77777776554


Q ss_pred             H
Q psy8368         291 G  291 (372)
Q Consensus       291 ~  291 (372)
                      .
T Consensus       251 ~  251 (301)
T 3u64_A          251 I  251 (301)
T ss_dssp             T
T ss_pred             H
Confidence            4

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.23  E-value=0.022  Score=58.10  Aligned_cols=134  Identities=9%  Similarity=-0.021  Sum_probs=93.7

Q ss_pred             HHHHHhhHHHHhccCHHHHH-HHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         156 QELGASGKNAFNDKNIVSAV-RRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~-~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ..+...+..+...|+...|. ..|.+|+..+|..               ..++...+....+.|++++|...+++++...
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---------------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---------------AVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34556677777788888897 9999999887765               5788899999999999999999999999732


Q ss_pred             c-------cCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         235 S-------HFATK-----------DVKLFFVWGKALIGLQEWTSAIKHLKTARKL-AAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       235 ~-------~~~p~-----------~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      .       .-.|.           ...+|...+......++.+.|...|.+|++. .+...   .+....+.+.......
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~---~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP---DIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT---HHHHHHHHHHHTTTSC
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHhCCC
Confidence            0       00142           4567888888888899999999999999988 43444   4444434343333221


Q ss_pred             HHHHHHHHHhhc
Q psy8368         296 QKETKARCMKMF  307 (372)
Q Consensus       296 ~~~~~~~~~~~~  307 (372)
                      .+..++.|...+
T Consensus       486 ~e~Ar~ife~~L  497 (679)
T 4e6h_A          486 TKTACKVLELGL  497 (679)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            233444444433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.05  Score=55.86  Aligned_cols=60  Identities=12%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                      ++.-.|.-++..|+|+-|+..+++|+.    +-|.....|++++.||..+|+|+.|+-.++-+-
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            445556677789999999999999998    889999999999999999999999998888773

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.65  E-value=0.23  Score=45.26  Aligned_cols=119  Identities=9%  Similarity=0.054  Sum_probs=79.7

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH-------HHHHHHHHH
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY-------KLTCDCASK  229 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y-------~~Ai~~~~~  229 (372)
                      .....|-.++..|+|.+|+..|+..|..++-....+.++..+++++...|..-+-.+-+.+.+-       +.....++-
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            3457899999999999999999999999877655666677788887776655444444444221       222222222


Q ss_pred             HHHhhc--cCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         230 ALQFAS--HFATKDVKLFFVWGKA-LIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       230 aL~~~~--~~~p~~~ka~~r~a~a-~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +. ++.  .++|.+.-.-+|.|.. .++.++|..|...-++.|++.|+..
T Consensus       184 AA-YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          184 AA-YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HH-HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HH-HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            21 111  1455544444455544 5789999999999999999988654

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=95.56  E-value=0.27  Score=44.78  Aligned_cols=119  Identities=11%  Similarity=0.041  Sum_probs=77.7

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---h
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF---A  234 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~---~  234 (372)
                      ....|-.++..|+|.+|+..|+..|..++-....+.++..+++++...|..-+-.+-+.+.+-.-.-..-.+.+++   +
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF  196 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF  196 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence            4558999999999999999999999988776555666677777777666544444444442211000111222221   1


Q ss_pred             c--cCCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         235 S--HFATKDVKLFFVWGK-ALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       235 ~--~~~p~~~ka~~r~a~-a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      .  .++|.+.-.-+|.|. ..++.++|..|....++.|++.|+..
T Consensus       197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            1  144544444444444 45789999999999999999999765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.17  E-value=0.32  Score=40.14  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH--hhc-----------cCCCCchhHHH-HHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQ--FAS-----------HFATKDVKLFF-VWGKALIGLQEWTSAIKHLKTARKLA  272 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~--~~~-----------~~~p~~~ka~~-r~a~a~~~l~~~e~A~~~~~~al~l~  272 (372)
                      .+--+.||.++++|..|+...+..|.  +.+           .+||.+-.-++ -+|..+..+|+-++|+.+|......+
T Consensus        65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~  144 (242)
T 3kae_A           65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS  144 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence            33468999999999999999999993  110           02344444444 46999999999999999999999999


Q ss_pred             CCCc
Q psy8368         273 AKDS  276 (372)
Q Consensus       273 p~~~  276 (372)
                      |-..
T Consensus       145 ~lf~  148 (242)
T 3kae_A          145 FLFS  148 (242)
T ss_dssp             CCHH
T ss_pred             cccc
Confidence            8766

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.13  E-value=0.52  Score=38.09  Aligned_cols=93  Identities=13%  Similarity=0.049  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHH
Q psy8368         172 VSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKA  251 (372)
Q Consensus       172 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a  251 (372)
                      ..-...|.+|+..+|....       ..-+-.+-++.+.|.. ..+++.++|...|+.+++    +....+|.|...|+-
T Consensus        36 ~rlrd~YerAia~~Pp~k~-------~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~----~hKkFAKiwi~~AqF  103 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKY-------GQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA----NCKKFAFVHISFAQF  103 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGG-------TTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH----HCTTBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccc-------ccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH----HhHHHHHHHHHHHHH
Confidence            6777899999998765421       1112335677777754 677999999999999998    455567777777887


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         252 LIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       252 ~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      -...|+...|...+.+|+.+.|...
T Consensus       104 EiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A          104 ELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHHcccHHHHHHHHHHHhccCCCcH
Confidence            8889999999999999999999876

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.12  Score=49.56  Aligned_cols=105  Identities=9%  Similarity=-0.064  Sum_probs=81.1

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..+++.|++..|+..|.++...+....            ....++.++..+++..++|..+..++.++......
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            356799999999999999999999888764321            12577888888999999999999999999765433


Q ss_pred             CCCCchh--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368         237 FATKDVK--LFFVWGKALIGLQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       237 ~~p~~~k--a~~r~a~a~~~l~~~e~A~~~~~~al~l~p  273 (372)
                      ......+  .....|.+++..++|..|-..|..++.-..
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            3222333  344567888899999999999998876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.43  E-value=3.4  Score=38.95  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhh-------------------hhccCCChHHH---------HH---HH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL-------------------INTQVTNYEDQ---------MQ---LE  200 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~-------------------~~~~~~~~~~~---------~~---~~  200 (372)
                      ..+=....+.|..|.+.|++++-.........++                   ...+...+..-         ..   ..
T Consensus        16 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~   95 (394)
T 3txn_A           16 RIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT   95 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677889999999999998888776544333                   22221111110         00   00


Q ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCC
Q psy8368         201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLA---AKD  275 (372)
Q Consensus       201 ~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~---p~~  275 (372)
                      =++..+-.++|..|+..|+|.+|+..+.+.++.+...|..  -...+....+.|..++++..+...|.+|....   +.+
T Consensus        96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~  175 (394)
T 3txn_A           96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP  175 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence            1223355589999999999999999999999876665543  45567888999999999999999999998765   244


Q ss_pred             c-cHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy8368         276 S-VRAEIDKEILKADL-GNQQYQKETKARCMK  305 (372)
Q Consensus       276 ~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  305 (372)
                      + ..+.+...-+.+.. ..++++.+....+..
T Consensus       176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          176 PKVQGALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence            4 22233333333334 445556555555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.72  E-value=0.41  Score=46.75  Aligned_cols=81  Identities=9%  Similarity=-0.106  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ..++.++|-...-...+..|..+|.+|+.    +.|++..+|..+|..+...|+.-+|+-+|-+++......+   .++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~----~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~---~a~~  224 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP---AAST  224 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH---HHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHH----hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh---hHHH
Confidence            34666677776667789999999999998    9999999999999999999999999999999999877777   7777


Q ss_pred             HHHHHHHH
Q psy8368         284 EILKADLG  291 (372)
Q Consensus       284 ~l~~~~~~  291 (372)
                      .|..+...
T Consensus       225 nL~~~f~~  232 (497)
T 1ya0_A          225 NLQKALSK  232 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.57  E-value=0.34  Score=45.34  Aligned_cols=70  Identities=10%  Similarity=0.059  Sum_probs=56.6

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA  238 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~  238 (372)
                      ...+..++..|+++.|+..+++|+.+.+.                ...|.-+|.++.-.|++++|+..+.+|++    ++
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~Alr----L~  340 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFN----LR  340 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cC
Confidence            34566677789999999999999998522                35667889999999999999999999998    89


Q ss_pred             CCchhHHHHHH
Q psy8368         239 TKDVKLFFVWG  249 (372)
Q Consensus       239 p~~~ka~~r~a  249 (372)
                      |... .|+...
T Consensus       341 P~~~-t~~~~~  350 (372)
T 3ly7_A          341 PGAN-TLYWIE  350 (372)
T ss_dssp             CSHH-HHHHHH
T ss_pred             CCcC-hHHHHh
Confidence            9764 444433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.21  E-value=0.48  Score=42.12  Aligned_cols=61  Identities=16%  Similarity=0.036  Sum_probs=57.3

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ...++.++.++|+..+...++    .+|.|++....+.+.+.-.|+++.|..-++.+.+++|...
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR----~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            346778999999999999998    9999999999999999999999999999999999999887

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.19  E-value=1.7  Score=42.32  Aligned_cols=124  Identities=6%  Similarity=-0.093  Sum_probs=83.7

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC---------hHHHHHH----------------HHHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN---------YEDQMQL----------------EEYLCRVYRNL  210 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~----------------~~l~~~l~~Nl  210 (372)
                      ..+...+..+...|+.+.|...|.+|+.. |.....+         ...-..+                ......++.+.
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            34666777788899999999999999998 5532110         0000000                01112456677


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368         211 MVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ-EWTSAIKHLKTARKLAAKDSVRAEIDKEILKA  288 (372)
Q Consensus       211 a~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~-~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~  288 (372)
                      +....+.+..+.|...+.+| +    ..+.....|...|..-...+ +++.|...|+++++..|+++   .........
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~----~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~---~~~~~yid~  363 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-G----NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST---LLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-T----TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH---HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh-h----CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH---HHHHHHHHH
Confidence            77777788999999999999 5    33335556666666555555 69999999999999999887   654444443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.25  E-value=2.3  Score=41.40  Aligned_cols=104  Identities=10%  Similarity=0.067  Sum_probs=79.6

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+...-+.+.+.|+++.|...|.+....-   -.++           ...|+.+-.+|.+.|++++|...++...+.  
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd-----------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--  169 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPR-----------LRSYGPALFGFCRKGDADKAYEVDAHMVES--  169 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc-----------cceehHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence            345566678889999999999998876531   1111           467888888999999999999999988761  


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCCc
Q psy8368         236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL--AAKDS  276 (372)
Q Consensus       236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l--~p~~~  276 (372)
                      -+.| +...|.-+-.+|...|++++|.+.|++....  .|+..
T Consensus       170 G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          170 EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            1223 6668888999999999999999999988764  56544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.39  E-value=0.5  Score=48.51  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      -+...+..+..+|+|+.|+..-++|+...|..               -.++..||.||+++|+|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45566788889999999999999999997665               689999999999999999999776644

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.85  E-value=2.2  Score=41.49  Aligned_cols=113  Identities=5%  Similarity=-0.110  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHH--
Q psy8368         173 SAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK--  250 (372)
Q Consensus       173 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~--  250 (372)
                      .....|++|+..++..               ..++.+.+..+...|+.++|...+.+|+.    . |.+...++..+.  
T Consensus       197 Rv~~~ye~al~~~p~~---------------~~lW~~ya~~~~~~~~~~~ar~i~erAi~----~-P~~~~l~~~y~~~~  256 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYA---------------EEVYFFYSEYLIGIGQKEKAKKVVERGIE----M-SDGMFLSLYYGLVM  256 (493)
T ss_dssp             HHHHHHHHHHHHTTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H-CCSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----C-CCcHHHHHHHHhhc
Confidence            3455677777665544               57888999999999999999999999998    4 766543333222  


Q ss_pred             --------------------------------------HHHhcCCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHH
Q psy8368         251 --------------------------------------ALIGLQEWTSAIKHLKTARKLAAK-DSVRAEIDKEILKADLG  291 (372)
Q Consensus       251 --------------------------------------a~~~l~~~e~A~~~~~~al~l~p~-~~~~~~~~~~l~~~~~~  291 (372)
                                                            .....++.+.|...|.+| + .|. ..   .+.-..+.+...
T Consensus       257 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~---~v~i~~A~lE~~  331 (493)
T 2uy1_A          257 DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGP---HVFIYCAFIEYY  331 (493)
T ss_dssp             TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCH---HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCCh---HHHHHHHHHHHH
Confidence                                                  222356678888888888 3 343 22   333333333333


Q ss_pred             HHHHHHHHHHHHHhhccCC
Q psy8368         292 NQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~  310 (372)
                      .....+..+..|...+...
T Consensus       332 ~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          332 ATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             HHCCSHHHHHHHHHHHHHC
T ss_pred             HCCChHHHHHHHHHHHHHC
Confidence            3322344556666554433

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.23  E-value=0.36  Score=34.80  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      .++.+..+-.+|...=+.|+|.+|+.+|..|++++..
T Consensus        15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999998744

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.87  E-value=2.7  Score=42.81  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHH
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDA  181 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~a  181 (372)
                      ..++..|..+.+.++++.|..+|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46788999999999999999999886

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.81  E-value=5.3  Score=35.41  Aligned_cols=63  Identities=10%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      .+.+++.|....|+......++..|.+               ..+...+-..+.-.|+|++|...++.+.+    ++|..
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~d---------------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~----l~p~~   64 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKD---------------ASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEY   64 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCchh
Confidence            457889999999999999999986654               56666677777778999999999999997    88875


Q ss_pred             hh
Q psy8368         242 VK  243 (372)
Q Consensus       242 ~k  243 (372)
                      ..
T Consensus        65 ~~   66 (273)
T 1zbp_A           65 LP   66 (273)
T ss_dssp             HH
T ss_pred             hH
Confidence            54

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.42  E-value=6.2  Score=37.72  Aligned_cols=110  Identities=12%  Similarity=-0.047  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +++.-....++.++..|+|.+|.........-....   .+      ...++.++.-....|+..++|.+|...++++..
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~---~~------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS---ME------MSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---SC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---cc------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            355556778999999999999999988776432211   11      123366777788889999999999999998753


Q ss_pred             -hhccCCCCchhHH--HHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         233 -FASHFATKDVKLF--FVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       233 -~~~~~~p~~~ka~--~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                       ......+...++.  .-.|..|...++|.+|-.+|..++..
T Consensus       206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             2222333444444  45688889999999999999988764

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=87.85  E-value=3.7  Score=30.03  Aligned_cols=38  Identities=11%  Similarity=0.120  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      .++.+..+...|...=..|+|.+|+.+|..|+.++-..
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a   48 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV   48 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999999999987553

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.61  E-value=3.5  Score=29.70  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=29.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      ..+..+...|..+=..|+|.+|+.+|..|++++-.
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45667777888888999999999999999998754

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=87.48  E-value=3.6  Score=31.55  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      .+..+..+...|...=..|+|.+|+.+|..|+.++-..
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a   51 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV   51 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            46788888889988889999999999999999987543

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.81  E-value=6.3  Score=30.04  Aligned_cols=77  Identities=10%  Similarity=0.003  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc---c----CCChHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy8368         147 AFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT---Q----VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ  219 (372)
Q Consensus       147 ~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~---~----~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~  219 (372)
                      .+....+.+-.+.+.|-..=..|+-..|+.+|+++|..+...   +    ....+.+...+.++.....|+..+-.+++.
T Consensus        14 ~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~   93 (116)
T 2dl1_A           14 IIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEI   93 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566778888888888888899999999999999887542   1    234567888888999999999999888775


Q ss_pred             HHHH
Q psy8368         220 YKLT  223 (372)
Q Consensus       220 y~~A  223 (372)
                      ....
T Consensus        94 Le~~   97 (116)
T 2dl1_A           94 LEKG   97 (116)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=86.29  E-value=3.2  Score=29.71  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      .++.+..+..+|...=+.|+|.+|+.+|..|++++-.
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999999999999999998744

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.28  E-value=9.3  Score=37.07  Aligned_cols=70  Identities=6%  Similarity=-0.062  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL--AAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l--~p~~~  276 (372)
                      ...|+.+-.+|.+.|++++|+..+++..+.  -+.| +...|.-+-.+|...|++++|.+.|....+.  .|+..
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            467888999999999999999999988761  1223 6778888999999999999999999998764  56554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.13  E-value=3.1  Score=44.95  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=74.9

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-CCh-HHHHHH------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-TNY-EDQMQL------EEYLCRVYRNLMVCYNNNKQYKLTCDCASKA  230 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~-~~~~~~------~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a  230 (372)
                      +-.|..++..|++++|..+|.+|-.-+..... ... .....+      .......|+.+...+-+.+.++.++..+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            67899999999999999999987543322111 110 010000      0112456788888888999999999999999


Q ss_pred             HHhhccCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368         231 LQFASHFATKDVK--LFFVWGKALIGLQEWTSAIKHLKTA  268 (372)
Q Consensus       231 L~~~~~~~p~~~k--a~~r~a~a~~~l~~~e~A~~~~~~a  268 (372)
                      |+....- +.+.+  .|.++-+++..+++|++|...+...
T Consensus       926 i~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          926 DASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9833211 12222  5788999999999999998777543

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=83.42  E-value=5.4  Score=28.49  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      .+..+..+...|...=..|+|.+|+.+|..|+.++-.
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4677888888888888999999999999999998744

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.46  E-value=6.8  Score=32.40  Aligned_cols=83  Identities=10%  Similarity=-0.110  Sum_probs=51.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      ....++..|......|++.-|..+|.++-.+-                       .+...|.-.|+-+.-....+.+.. 
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-----------------------~L~~Ly~~tg~~e~L~kla~iA~~-   88 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQHSFD-----------------------KLSFLYLVTGDVNKLSKMQNIAQT-   88 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-----------------------HHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-----------------------HHHHHHHHhCCHHHHHHHHHHHHH-
Confidence            44578889999999999999999997765441                       122334445555554444444442 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA  268 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a  268 (372)
                         . -    -+.-...+++.+|+++++++.|.+.
T Consensus        89 ---~-g----~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           89 ---R-E----DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             ---T-T----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ---C-c----cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence               1 1    1233345677788888888777654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=82.37  E-value=6.8  Score=38.10  Aligned_cols=82  Identities=17%  Similarity=0.039  Sum_probs=68.6

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .-..+-..|....-...+..|...|.+|+.+.|..               ...|+-+|..+.-.+++-+|+-+|.++|- 
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~---------------G~~~nqLavla~~~~~~l~a~y~y~rsl~-  214 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN---------------GQPYNQLAILASSKGDHLTTIFYYCRSIA-  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHS-
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC---------------CchHHHHHHHHhcccccHHHHHHHHHHHh-
Confidence            34567788999888899999999999999998887               57899999999999999999999999995 


Q ss_pred             hccCCCCchhHHHHHHHHHHh
Q psy8368         234 ASHFATKDVKLFFVWGKALIG  254 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~  254 (372)
                         .......|.-++...+..
T Consensus       215 ---~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          215 ---VKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             ---SSBCCHHHHHHHHHHHHH
T ss_pred             ---cCCCChhHHHHHHHHHHH
Confidence               444567777777776653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.60  E-value=3.4  Score=40.27  Aligned_cols=72  Identities=17%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~--~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +.+++-+-..|+.-+.|+.|.....++.- ....-+++  +.=+|-.|+++...++|.+|.++|..|++..|.+.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEY-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCS-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcC-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            56777888899999999999999999952 00001222  33456679999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-16
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	4e-16
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-15
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	5e-15
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-14
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-14
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	6e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-11
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-09
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-07

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +DG ++K IK++G G   P  G  V+VHY+   E                     G+  +
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGN--V 65

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
           I  ++  + +M KGE ++F    +  +G  G PP+IP  A L+FEV L  +S
Sbjct: 66  IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 4e-16
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           QD  ++K IK +G G E P++G  V VHY  +              +     F LG   +
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD--RKDKFSFDLGKGEV 66

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++ AI +M+ GE        E  +G+ G PP+IP  A L+FEV L  F
Sbjct: 67  IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 7   GKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
           G++ ++DG ++++ K +G G  NP  GA VQ+H            D   +  ++ E    
Sbjct: 1   GEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGR--VFDCRDVAFTVGEGED- 57

Query: 66  GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINF 121
               +    + A+  MQ+ E+          FG  G P   I   A+L++EV L +F
Sbjct: 58  --HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.2 bits (166), Expect = 5e-15
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 10  QIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS 68
           ++ +G +       G G   P  G  V +HY    E  +                 +G  
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQ- 60

Query: 69  GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
            +I  ++  I  +  GEK+         +G  G P  IP  + L+F+V L+  +
Sbjct: 61  -VIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 10  QIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS 68
           + +DG ++++I+ +G G   P  GA V+V    Y +                E  +  + 
Sbjct: 4   EEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELR-----FEIGEGENL 58

Query: 69  GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINF 121
            L    E AI  M+KGE S  +      FG++G    +IP  A+L +E+HL +F
Sbjct: 59  DLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 112

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 65.9 bits (160), Expect = 4e-14
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 12  QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
           +D  ++K +K  G G E P++G  V VHY       +         +        G   +
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQ--V 59

Query: 71  IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           I A++  + +M+KGE        E  +GA G  P+IP+ A L FEV L++F
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 16  LMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 74
           +  +    G G   P  G    VHY    E  +         K     F LG   +I  +
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFK--FMLGKQEVIRGW 59

Query: 75  EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
           E  +  M  G+++    S +  +GA G P  IP  A L+F+V L+  
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 15  KLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPI-----DITYLRKSIPERFQLGSS 68
           K  K + +KG     P  G  V   Y    +   +            + + P  F++G  
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 69  GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLFEVHLINF 121
            +I  ++ A+L+M KGEK+      E  +G  G P  +IP  A L FEV L++ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 7   GKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG 66
              ++  G + ++I        P +    +VHY            +    +   +     
Sbjct: 28  DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDG----TVFDSSRERGKPTTFR 83

Query: 67  SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQ 126
            + +I  +  A+  M++G++   F  Y+L +G  G    IP  + L F+V LI+   D  
Sbjct: 84  PNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK-DGG 142

Query: 127 VVRSSADIESDFIDSQVEE 145
             R++ +++      + EE
Sbjct: 143 KGRTAEEVDEIL--RKAEE 159

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 53.3 bits (127), Expect = 5e-09
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 13  DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
              L  K+   G G  P     V V Y          +  +  +   P  FQ+    +IP
Sbjct: 97  PSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGT--VFDSTEKTGKPATFQVS--QVIP 152

Query: 73  AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
            +  A+  M  G   + +    L +G       I     L+F++HLI+ 
Sbjct: 153 GWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 16  LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 75
           L    K  G+G   V G  ++ HY+   E     +  +   +  P  F++G   +I  ++
Sbjct: 10  LAFCDKVVGYGPEAVKGQLIKAHYVGKLENG--KVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 76  ------YAILSMQKGEKSDFFASYELCFGALGCPPR-----IPAKADLLFEVHLI 119
                   I  M  G K       EL +G  G   +     IP  + LLF++  I
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 5e-08
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 16  LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 75
           L+ ++ E G GE P     V V+Y       +   +     +  P  F+L   G+IP + 
Sbjct: 109 LVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWT 164

Query: 76  YAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
             + +++KG K       EL +G  G P  IP  + L+F+V L++ 
Sbjct: 165 EGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 7/157 (4%)

Query: 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLM 211
           L++A  +   G   F     V AV +Y   V  L      + ++    E +L   + NL 
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71

Query: 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271
           +CY   ++Y    +C  KAL   S       +         + + E+ SA    +   ++
Sbjct: 72  MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ----LLMNEFESAKGDFEKVLEV 127

Query: 272 AAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308
             ++        +I       +++ +  +     MF 
Sbjct: 128 NPQN---KAARLQIFMCQKKAKEHNERDRRTYANMFK 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.94
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.94
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.94
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.94
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.89
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.88
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.88
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.86
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.85
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.55
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.38
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.37
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.35
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.33
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.31
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.23
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.23
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.19
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.17
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.16
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.92
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.86
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.86
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.83
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.77
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.68
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.5
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.47
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.41
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.28
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.14
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.1
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.87
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.02
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.86
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.85
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.21
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.66
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.94

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.5e-27  Score=184.43  Aligned_cols=115  Identities=36%  Similarity=0.599  Sum_probs=108.9

Q ss_pred             CCcccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCC
Q psy8368           6 YGKEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ   82 (372)
Q Consensus         6 ~~~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~   82 (372)
                      .|.|||  +|++|+|+|+++|+|.. |..||.|+|||++++.||+ +||||+..+. |++|.+|.+.+++||+.+|.+|+
T Consensus         1 ~~~d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~-~fdss~~~~~-p~~f~~g~~~~i~G~~~~l~~M~   78 (120)
T d1q1ca1           1 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT-KFDSSLDRKD-KFSFDLGKGEVIKAWDIAIATMK   78 (120)
T ss_dssp             CCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSC-EEEESTTSSS-CEEEETTTTSSCHHHHHHHTTCC
T ss_pred             CceeccCCCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCC-EEEecccccc-ceeeecCCCceeeeeeeeecccc
Confidence            378998  69999999999999976 8999999999999998864 9999998888 99999999999999999999999


Q ss_pred             CCcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +||++.|.|||+++||+.|.++.|||+++|+|+|+|++|+
T Consensus        79 ~Ge~~~~~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          79 VGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             TTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCcEEEEEECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            9999999999999999999988999999999999999987

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.94  E-value=2.7e-26  Score=193.62  Aligned_cols=164  Identities=19%  Similarity=0.295  Sum_probs=152.7

Q ss_pred             cccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         136 SDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYN  215 (372)
Q Consensus       136 ~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~  215 (372)
                      +.|+|+..|      .++.+..+++.||.+|+.|+|.+|+..|.+||.+++...............+...+|+|+|.||+
T Consensus         2 e~~~m~~~E------~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1           2 ESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL   75 (168)
T ss_dssp             CGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH
Confidence            468887655      58899999999999999999999999999999999887777777777888888999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      ++++|.+|+.+|+++|+    ++|+++++|+++|.+|..+|+|++|+.+|.++++++|+|.   .+...+..+...+..+
T Consensus        76 ~l~~~~~Ai~~~~~al~----l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          76 KLREYTKAVECCDKALG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK---AARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---HHHHHHHHHHHHHHHH
T ss_pred             Hhhhcccchhhhhhhhh----cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhH
Confidence            99999999999999998    9999999999999999999999999999999999999999   9999999999999999


Q ss_pred             HHHHHHHHHhhccCCCC
Q psy8368         296 QKETKARCMKMFSSSSS  312 (372)
Q Consensus       296 ~~~~~~~~~~~~~~~~~  312 (372)
                      .+.+++.|.+||.+...
T Consensus       149 ~e~~kk~~~~~f~~~~~  165 (168)
T d1kt1a1         149 NERDRRTYANMFKKFAE  165 (168)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999986544

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.3e-26  Score=183.20  Aligned_cols=113  Identities=34%  Similarity=0.593  Sum_probs=106.5

Q ss_pred             cccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCC
Q psy8368           8 KEQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKG   84 (372)
Q Consensus         8 ~di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~G   84 (372)
                      .|||  +|+||+|+|+++|+|.. |..||.|++||++++.|| ++|++|+..+. |++|.+|.+.+++||+++|.+|++|
T Consensus         2 ~d~t~~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG-~v~dss~~~~~-p~~f~~g~~~vi~G~~~~l~~M~~G   79 (118)
T d1r9ha_           2 IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG-TKFDSSRDRGD-QFSFNLGRGNVIKGWDLGVATMTKG   79 (118)
T ss_dssp             EECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS-CEEEEHHHHTS-CEEEETTTTSSCHHHHHHHTTCCBT
T ss_pred             ccccccCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCC-CEEEEccccce-eeeeeccCcceeeeeeeeeeeecCC
Confidence            4776  89999999999999976 999999999999999876 59999998888 9999999999999999999999999


Q ss_pred             cEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          85 EKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        85 e~~~~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |++.|.|||+++||+.|.++.|||+++|+|+|+|++|.
T Consensus        80 e~~~~~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          80 EVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ceEEEEECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            99999999999999999988999999999999999886

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=190.13  Aligned_cols=162  Identities=14%  Similarity=0.190  Sum_probs=151.8

Q ss_pred             ccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         137 DFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN  216 (372)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k  216 (372)
                      +|+|+.++      +++.+..+++.||.+|+.|+|.+|+..|++||.+++......+........+...+|+|+|.||++
T Consensus         1 ~~~~~~~e------k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k   74 (170)
T d1p5qa1           1 SWEMNSEE------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK   74 (170)
T ss_dssp             GGGCCHHH------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh
Confidence            37787765      488999999999999999999999999999999998887777777888888999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368         217 NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ  296 (372)
Q Consensus       217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~  296 (372)
                      +|+|++|+.+|+++|+    ++|+++++++++|.||..+|+|++|+.+|++|++++|+|+   .+...+..+..++..+.
T Consensus        75 ~~~~~~A~~~~~~al~----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          75 LQAFSAAIESCNKALE----LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK---AAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhh----ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHH
Confidence            9999999999999998    9999999999999999999999999999999999999999   99999999999999999


Q ss_pred             HHHHHHHHhhccCCC
Q psy8368         297 KETKARCMKMFSSSS  311 (372)
Q Consensus       297 ~~~~~~~~~~~~~~~  311 (372)
                      ..++..|++||....
T Consensus       148 ~~e~~~~~~~f~~~~  162 (170)
T d1p5qa1         148 AREKKLYANMFERLA  162 (170)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999997543

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=6e-26  Score=177.52  Aligned_cols=109  Identities=34%  Similarity=0.615  Sum_probs=85.0

Q ss_pred             CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          12 QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      +|+|++|+|+++|+|.. |..||.|+|||++++.|| ++||||+..+. |++|.+|++.+++||+++|.+|++||++.|.
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG-~~~dss~~~~~-p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANG-KKFDSSHDRNE-PFVFSIGKGQVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC--------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCC-CEEEEEEecce-eeeeecCCCcEEeeeeeeehhccCCcEEEEE
Confidence            58999999999999986 999999999999998875 59999988888 9999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||++|||+.|.++.||||++|+|+|+|++|+
T Consensus        80 ip~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            99999999999888999999999999999875

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.1e-25  Score=169.68  Aligned_cols=106  Identities=28%  Similarity=0.479  Sum_probs=100.1

Q ss_pred             cEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecC
Q psy8368          15 KLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASY   93 (372)
Q Consensus        15 ~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~   93 (372)
                      |+.++++++|+|.. |..||.|+|||++++.||. +||+++..+. |++|.+|.+.+++||+++|.+|++||++.|.|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~-~~d~s~~~~~-p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK-KFDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSC-EEEEHHHHTS-CEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCe-EEEeeeccce-eeeEeeCcchhheeehhhhcCccCCCEEEEEECH
Confidence            68999999999987 8999999999999998764 8999988778 9999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          94 ELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        94 ~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      +++||+.|.++.||+|++++|+|+|++++
T Consensus        79 ~laYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            99999999988899999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-24  Score=170.34  Aligned_cols=109  Identities=26%  Similarity=0.435  Sum_probs=102.7

Q ss_pred             CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          12 QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        12 ~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      -|++|.++++++|+|.. |+.||.|+|||++++.||. +||+++.... |+.|.++.+.+++||+++|.+|++|+++.|.
T Consensus         4 ~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~-~~ds~~~~~~-~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~   81 (113)
T d1yata_           4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQ-KFDSSVDRGS-PFQCNIGVGQVIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSC-EEEESTTTTC-CEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred             ccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCc-EEeccccCCc-eEeeeeccCceeeehhhhcccccCCCEEEEE
Confidence            37899999999999987 8999999999999998865 8999988777 9999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||++|||+.|.++.||++++|+|+|+|++|.
T Consensus        82 iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             echHHeecCcCCCCccCcCCeEEEEEEEEEeC
Confidence            99999999999988999999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.91  E-value=9.2e-24  Score=175.14  Aligned_cols=147  Identities=22%  Similarity=0.266  Sum_probs=131.3

Q ss_pred             cccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHH
Q psy8368         136 SDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY-EDQMQLEEYLCRVYRNLMVCY  214 (372)
Q Consensus       136 ~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~l~~~l~~Nla~~~  214 (372)
                      +.|+|+.++      .++.+..+++.||.+|+.|+|.+|+..|++|+.+++......+ ........+...+++|+|.||
T Consensus         4 ~~~~~~~~e------~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~   77 (153)
T d2fbna1           4 SIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY   77 (153)
T ss_dssp             SGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHH
Confidence            467776554      5899999999999999999999999999999999877654433 344556677789999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368         215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ  294 (372)
Q Consensus       215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~  294 (372)
                      +++++|.+|+.+|+++|+    ++|.++++||++|.+|..+|++++|+.+|+++++++|+|.   ++...+..+..++++
T Consensus        78 ~~l~~~~~Al~~~~~al~----~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLK----IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL---DIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhcccc----ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Confidence            999999999999999998    9999999999999999999999999999999999999999   999999999887765


Q ss_pred             H
Q psy8368         295 Y  295 (372)
Q Consensus       295 ~  295 (372)
                      .
T Consensus       151 ~  151 (153)
T d2fbna1         151 A  151 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.3e-23  Score=175.44  Aligned_cols=167  Identities=20%  Similarity=0.303  Sum_probs=144.7

Q ss_pred             cccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-CCChHHHHHHHHHHH
Q psy8368         126 QVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-VTNYEDQMQLEEYLC  204 (372)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~l~~  204 (372)
                      ++++.++++|++++...   ..++..+..+..++..|+.++..|+|.+|+..|.+||.+++... ...............
T Consensus         1 ~~gd~~~d~p~d~~~~l---~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~   77 (169)
T d1ihga1           1 GSGDSHPDFPEDADVDL---KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL   77 (169)
T ss_dssp             SSCCCSCSSGGGSSSCT---TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH
T ss_pred             CCCCCCCCCchhhHHCH---hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhH
Confidence            46788898998865543   34566788899999999999999999999999999999876542 222333445567778


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .+++|+|.||+++|+|++|+.+|++||+    ++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|.   .+...
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~---~~~~~  150 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK---AIQAE  150 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhh----hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHH
Confidence            8999999999999999999999999998    9999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8368         285 ILKADLGNQQYQKETKAR  302 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~  302 (372)
                      |..+...++.+.+++++.
T Consensus       151 l~~~~~~l~~~~~~~k~~  168 (169)
T d1ihga1         151 LLKVKQKIKAQKDKEKAA  168 (169)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999998888777643

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.90  E-value=1.4e-23  Score=165.40  Aligned_cols=108  Identities=29%  Similarity=0.473  Sum_probs=97.5

Q ss_pred             CccccCCCcEEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCC---ccchHHHHHhccCC
Q psy8368           7 GKEQIQDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS---GLIPAFEYAILSMQ   82 (372)
Q Consensus         7 ~~di~~d~~i~k~il~~G~g~-~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~---~~~~~le~~l~~m~   82 (372)
                      |+||++|++|+|+|+++|+|. .|..||.|+|||+++++ | .+|+++      +..|.++.+   .+++||+.+|.+|+
T Consensus         1 ~e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~~-g-~~~~~~------~~~~~~~~~~~~~vi~G~~~~l~~M~   72 (115)
T d1kt1a3           1 GEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-G-RVFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQ   72 (115)
T ss_dssp             CEETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEET-T-EEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             CCccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEeC-C-cccccc------ccCceeeeccccccCchhHhhhccch
Confidence            689999999999999999996 59999999999999973 3 477765      677777754   58999999999999


Q ss_pred             CCcEEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~~  122 (372)
                      +||++.|.|||+++||..|.++ .||||++|+|+|+|++|+
T Consensus        73 ~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~  113 (115)
T d1kt1a3          73 REEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE  113 (115)
T ss_dssp             TTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEE
T ss_pred             hhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEE
Confidence            9999999999999999999877 699999999999999987

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=164.98  Aligned_cols=106  Identities=31%  Similarity=0.494  Sum_probs=96.9

Q ss_pred             cEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeeccc-------CCCcCeEEEcCCCccchHHHHHhccCCCCcE
Q psy8368          15 KLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYL-------RKSIPERFQLGSSGLIPAFEYAILSMQKGEK   86 (372)
Q Consensus        15 ~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~-------~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~   86 (372)
                      .+.|+|+++|+|.. |..||.|+|||++++.||. +||+++.       ... |++|.+|++.+++||+++|.+|++||+
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~-~fdss~~~~~~~~~~~~-p~~f~lg~~~~i~Gl~~~v~~M~~Ge~   79 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGT-VFDTNIQTSAKKKKNAK-PLSFKVGVGKVIRGWDEALLTMSKGEK   79 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSC-EEEECCCSSCCTTTSSC-CEEEETTTTSSCHHHHHHHTTCCTTCE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCC-EeecccccccccccCCC-ceeeeecccccccchheechhhcCCcE
Confidence            57899999999976 9999999999999998864 8999864       345 999999999999999999999999999


Q ss_pred             EEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEeee
Q psy8368          87 SDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFS  122 (372)
Q Consensus        87 ~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~~  122 (372)
                      +.|.|||+++||+.|.+. .||++++|+|+|+|++|.
T Consensus        80 ~~~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          80 ARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            999999999999998864 799999999999999874

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=2.5e-23  Score=180.15  Aligned_cols=108  Identities=24%  Similarity=0.360  Sum_probs=102.0

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      ..++|++++|+++|+|..|..||.|+|||++++.||+ +||+++.++. |++|.+|  .+++||+++|.+|++|+++.|.
T Consensus        95 ~~~sGl~y~v~~~G~G~~p~~~d~v~v~y~g~l~dg~-~f~~s~~~~~-p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGT-VFDSTEKTGK-PATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             ECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEETTSC-EEEEHHHHCS-CEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EecCccEEEEeecCCCcccCCCCEEEEEEEEEECCCC-EecccccCCC-CceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            3578899999999999999999999999999999865 9999988888 9999988  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||+++||..|.++.||||++|+|+|+|++|.
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~  202 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  202 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEE
Confidence            99999999999988999999999999999987

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.5e-22  Score=175.96  Aligned_cols=107  Identities=30%  Similarity=0.514  Sum_probs=100.3

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF   90 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~   90 (372)
                      ...+|++++|+++|+|..|..||.|+|||++++.|| ++||+|+.++. |++|.+|  .+++||+++|.+|++|+++.+.
T Consensus       104 ~~~sGl~y~v~~~G~G~~p~~gd~v~v~y~g~l~dG-~~fd~s~~~~~-p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDG-KEFDNSYTRGE-PLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             ECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETTS-CEEEEGGGGTS-CEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EccCceEEEEeeCCCCCCCCCCceEEEEEEEEEcCC-CEEeecccCCC-cceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            367899999999999988999999999999999986 49999998888 9999998  7999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |||+++||..|.++ ||||++|+|+|+|++|+
T Consensus       180 iP~~laYG~~g~~~-Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVPG-IPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCCC-CCcCCcEEEEEEEEEEC
Confidence            99999999999875 99999999999999874

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.88  E-value=9.1e-23  Score=169.39  Aligned_cols=109  Identities=24%  Similarity=0.409  Sum_probs=98.5

Q ss_pred             ccCCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEE
Q psy8368          10 QIQDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD   88 (372)
Q Consensus        10 i~~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~   88 (372)
                      ++.++||+++|+++|.|.. |..||.|+|||++++.||+ +|+++..... |+.  ++.+.+++||+++|.+|++|+++.
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~-~fds~~~~~~-p~~--~~~~~~i~G~~e~l~~M~~Ge~~~  105 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGT-VFDSSRERGK-PTT--FRPNEVIKGWTEALQLMREGDRWR  105 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSC-EEEEHHHHTS-CEE--ECGGGSCHHHHHHHTTCCTTCEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCC-eeeeeccccC-ccc--cCccccchhHHHHhcCccccceeE
Confidence            3467889999999999985 8999999999999988764 8999987766 655  455599999999999999999999


Q ss_pred             EEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368          89 FFASYELCFGALGCPPRIPAKADLLFEVHLINFS  122 (372)
Q Consensus        89 ~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~  122 (372)
                      |+|||+++||..|.++.||+|++|+|+|+|++|.
T Consensus       106 v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~  139 (160)
T d1jvwa_         106 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK  139 (160)
T ss_dssp             EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEG
T ss_pred             EEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEe
Confidence            9999999999999888899999999999999998

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=153.32  Aligned_cols=106  Identities=33%  Similarity=0.542  Sum_probs=93.6

Q ss_pred             ccc--CCCcEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCC---ccchHHHHHhccCC
Q psy8368           9 EQI--QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS---GLIPAFEYAILSMQ   82 (372)
Q Consensus         9 di~--~d~~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~---~~~~~le~~l~~m~   82 (372)
                      |||  +|+||+|+|+++|+|.. |..||.|+|||++++.+ + .|+++      +..+..+.+   .+++||+.+|.+|+
T Consensus         1 d~t~~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~-~-~~~~~------~~~~~~~~~~~~~~i~Gl~~~l~~M~   72 (117)
T d1q1ca2           1 DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD-K-LFDQR------ELRFEIGEGENLDLPYGLERAIQRME   72 (117)
T ss_dssp             ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETT-E-EEEEE------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             CCCccCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCC-C-cEeec------cccceeeecceeeeCcHHHHhhhcch
Confidence            676  88999999999999965 99999999999999875 3 46654      556666644   68999999999999


Q ss_pred             CCcEEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEEeee
Q psy8368          83 KGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFS  122 (372)
Q Consensus        83 ~Ge~~~~~i~~~~~yg~~g~~~-~ip~~~~~~~~iel~~~~  122 (372)
                      +||++.+.|||++|||..|.++ .|||+++|+|+|+|+++.
T Consensus        73 ~Ge~~~i~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~  113 (117)
T d1q1ca2          73 KGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE  113 (117)
T ss_dssp             TTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEE
T ss_pred             hhCeEEEEECHHHhCcccCCCCCccCcCCeEEEEEEEEEEE
Confidence            9999999999999999999866 799999999999999988

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=1.1e-21  Score=156.52  Aligned_cols=109  Identities=28%  Similarity=0.444  Sum_probs=98.9

Q ss_pred             cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhcc------CCCC
Q psy8368          11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS------MQKG   84 (372)
Q Consensus        11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~------m~~G   84 (372)
                      +..+|++++++++|+|..|..||.|+|||++++.+| ++||+|+..+. |+.|.+|.+.++++|+.+|.+      |++|
T Consensus         5 ~~psGl~y~~~~~G~G~~p~~gd~V~v~y~g~l~~G-~~fdss~~~~~-p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G   82 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENG-KVFDSSYNRGK-PLTFRIGVGEVIKGWDQGILGSDGIPPMLTG   82 (125)
T ss_dssp             ECTTSCEEEEEECCSSCBCCTTCEEEEEEEEECTTS-CEEEEHHHHTS-CEEEETTSSSSCHHHHHHHHCBTTBCCCBTT
T ss_pred             ECCCCCEEEEEEeccCCCCCCCCEEEEEEEeeecCC-cEEecccccCc-ceeEecCccccccchhhhccchhhcccccCC
Confidence            467789999999999988999999999999998876 49999988777 999999999999999998865      9999


Q ss_pred             cEEEEEecCCCccCCCCC-----CCCCCCCCcEEEEEEEEee
Q psy8368          85 EKSDFFASYELCFGALGC-----PPRIPAKADLLFEVHLINF  121 (372)
Q Consensus        85 e~~~~~i~~~~~yg~~g~-----~~~ip~~~~~~~~iel~~~  121 (372)
                      +++.|.|||+++||+.|.     ++.||++++|+|+|+|+.+
T Consensus        83 ~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          83 GKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999999875     2359999999999999865

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7e-20  Score=144.36  Aligned_cols=115  Identities=20%  Similarity=0.260  Sum_probs=109.2

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .++.+++.||.+++.|+|++|+..|.++|...|..               ..+++|+|.||.++|+|.+|+.+|+++++ 
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~-   65 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVD-   65 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---------------hhhhhcccccccccccccccchhhhhHHH-
Confidence            47789999999999999999999999999997766               68999999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                         ++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++   .+...+.+++.
T Consensus        66 ---~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~l~~  116 (117)
T d1elwa_          66 ---LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP---QLKEGLQNMEA  116 (117)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---HHHHHHHHHHH
T ss_pred             ---hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHhC
Confidence               9999999999999999999999999999999999999999   99999888764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.4e-19  Score=145.80  Aligned_cols=122  Identities=20%  Similarity=0.327  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368         150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK  229 (372)
Q Consensus       150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~  229 (372)
                      +-++++..++.+||.+|+.|+|.+|+..|++|+.+.|..               ..+|+|+|.||+.+|++.+|+.+|++
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~k   69 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATR   69 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---------------hhhhhhhHHHHHhccccchHHHHHHH
Confidence            357899999999999999999999999999999997665               78999999999999999999999999


Q ss_pred             HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                      +|+    ++|+++++|+++|.+|..+|++++|+.+|+++++++|++.   .+...+..+....+
T Consensus        70 al~----~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~  126 (159)
T d1a17a_          70 AIE----LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK---DAKMKYQECNKIVK  126 (159)
T ss_dssp             HHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHH
T ss_pred             HHH----HcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHH
Confidence            998    9999999999999999999999999999999999999999   88888887765544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=4.8e-18  Score=145.16  Aligned_cols=103  Identities=25%  Similarity=0.353  Sum_probs=98.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ++.+++.||.+|+.|+|++|+..|.+||.+.|..               ..+|+|+|.||+++|+|++|+.+|++||+  
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---------------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--   66 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALE--   66 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHhhhhhhhhhhHHHHHHHH--
Confidence            6789999999999999999999999999997665               68999999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                        ++|+++++|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        67 --l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          67 --LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             --SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence              9999999999999999999999999999999999998654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-16  Score=126.30  Aligned_cols=118  Identities=17%  Similarity=0.231  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.|..+++.|+.+|..|+|.+|+.+|+++|++.|..               ..+++|+|.||.++|+|.+|+.+|+++|+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            468899999999999999999999999999997665               68999999999999999999999999998


Q ss_pred             hhccCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDV-------KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       233 ~~~~~~p~~~-------ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                          ++|++.       ++|+++|.++..++++++|+.+|.+++..+|+ +   ++...+..+.+.++
T Consensus        67 ----l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~---~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 ----VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-P---DVLKKCQQAEKILK  126 (128)
T ss_dssp             ----HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H---HHHHHHHHHHHHHH
T ss_pred             ----hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHHHh
Confidence                666654       57888899999999999999999999999875 5   56666666655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.2e-15  Score=118.01  Aligned_cols=113  Identities=10%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhhc
Q psy8368         159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN---NKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k---l~~y~~Ai~~~~~aL~~~~  235 (372)
                      -+.+|.++..++|.+|...|++++...|..               ..+++|+|.|+++   .+++.+|+..+++++.   
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---------------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~---   64 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS---------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---
Confidence            457889999999999999999999997665               6899999999987   5567789999999997   


Q ss_pred             cCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368         236 HFATKD--VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ  293 (372)
Q Consensus       236 ~~~p~~--~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~  293 (372)
                       .+|.+  +.++|.+|.+|..+|+|++|+.+|+++++++|+|.   .++..+..+..+++
T Consensus        65 -~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~---~A~~l~~~I~~~~~  120 (122)
T d1nzna_          65 -KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---QAKELERLIDKAMK  120 (122)
T ss_dssp             -TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHH
T ss_pred             -ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHHc
Confidence             77765  45999999999999999999999999999999999   99988888877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.55  E-value=7.3e-15  Score=120.95  Aligned_cols=122  Identities=12%  Similarity=0.082  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      +..+..++..|+.++..|+|++|+..|++||.+.+..+.....   ........+|+|+|.||.++|+|++|+.+|+++|
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            4556667778999999999999999999999998776432211   1112336789999999999999999999999999


Q ss_pred             Hhhcc---CCC----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASH---FAT----KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~---~~p----~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++.+.   ..+    ...++++++|.+|..+|++++|+.+|++|+++.|...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            85432   122    2456899999999999999999999999999987654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=5.2e-14  Score=124.14  Aligned_cols=117  Identities=15%  Similarity=0.006  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+...|..++..|+|++|+..|++||.+.|..               ..+++++|.||.++|+|++|+.+|+++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---------------HHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            467889999999999999999999999999997665               67899999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                          ++|+++.+++++|.+|..+|++++|+..|+++++++|++.   .....+..+...
T Consensus       100 ----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~  151 (259)
T d1xnfa_         100 ----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP---FRSLWLYLAEQK  151 (259)
T ss_dssp             ----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred             ----HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH---HHHHHHHHHHHH
Confidence                9999999999999999999999999999999999999998   665555544433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-13  Score=117.19  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=108.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+.++|..++..|+|..|+..|.++.   +    +.           ..+++|+|.||+++|+|++|+.+|++||+ 
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~----~~-----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~-   64 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQ---D----PH-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN-   64 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS---S----CC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcC---C----CC-----------HHHHHHHHHHHHHcCCchhHHHHHHHHHH-
Confidence            45577789999999999999999997531   1    11           35788999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-------------cHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-------------VRAEIDKEILKADLGNQQYQKETK  300 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~  300 (372)
                         ++|+++.+|+++|.+|..+|+|++|+.+|++|+...|.|.             ...++...++.+...++++.+.. 
T Consensus        65 ---ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~-  140 (192)
T d1hh8a_          65 ---RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-  140 (192)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred             ---HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH-
Confidence               9999999999999999999999999999999999877664             12356667777777777765543 


Q ss_pred             HHHHhhccCC
Q psy8368         301 ARCMKMFSSS  310 (372)
Q Consensus       301 ~~~~~~~~~~  310 (372)
                      ..+.......
T Consensus       141 ~~l~~A~~~~  150 (192)
T d1hh8a_         141 EQLALATSMK  150 (192)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcC
Confidence            3455554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=8.7e-14  Score=113.08  Aligned_cols=115  Identities=9%  Similarity=-0.065  Sum_probs=100.3

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHH
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN----------KQYKLTCDCASKAL  231 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl----------~~y~~Ai~~~~~aL  231 (372)
                      ++.+-+.+.|++|+..|++|+.+.|..               ..+++|+|.|+..+          +.+++|+.++++||
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~---------------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcc---------------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            344566788999999999999998776               68999999999865          55689999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368         232 QFASHFATKDVKLFFVWGKALIGLQE-----------WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE  298 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~~~l~~-----------~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~  298 (372)
                      +    ++|+++.+|+++|.+|..+|+           |++|+.+|++|++++|+|.   .++..|..+.+..+.+.+.
T Consensus        69 ~----l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~---~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          69 L----IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---HYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             H----HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHTHHHHHHHH
T ss_pred             H----hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH---HHHHHHHHHHHHHHHHHHH
Confidence            8    999999999999999988764           7999999999999999999   9999999988777665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.44  E-value=3.2e-13  Score=104.59  Aligned_cols=94  Identities=13%  Similarity=0.100  Sum_probs=87.6

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .....|..+++.|+|.+|+..|++++...|..               ..++.++|.|+.+++++.+|+.+++++++    
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~----   78 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARM----   78 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc---------------chhhhhhhhhhhhhhhHHHhhcccccccc----
Confidence            34678999999999999999999999997765               68999999999999999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                      ++|++..+++.+|.+|..+|++++|++.|++.|
T Consensus        79 ~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          79 LDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999976

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.8e-12  Score=106.95  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=91.9

Q ss_pred             HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368         156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS  235 (372)
Q Consensus       156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~  235 (372)
                      ..+.+.|+.++..|+|++|+..|++||++.+..               ..+|+|+|.||.++|+|++|+.+|++|+.   
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~---   98 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALI---   98 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHhhccHHHHHHHHHHHHH---
Confidence            357899999999999999999999999998776               68999999999999999999999999997   


Q ss_pred             cCCCC----------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         236 HFATK----------------DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       236 ~~~p~----------------~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                       ..+.                ...+++++|.+|..+|++++|++.|.+|+++.|...
T Consensus        99 -~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          99 -QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             -TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             -hCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence             3222                247899999999999999999999999999998754

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.37  E-value=4.7e-13  Score=98.08  Aligned_cols=84  Identities=14%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPA  108 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip~  108 (372)
                      +..||.|+|+|++++ + |+.|+++.  .. .++|.+|.+.++|||+.+|.+|++|++..|.+++..+|+..+.     +
T Consensus         2 ~a~GD~V~idy~g~~-d-G~~~~~~~--~~-~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----a   71 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-D-NKKLASAS--AQ-NYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----Q   71 (85)
T ss_dssp             CCSSEEEEEEEEEEE-T-TEECSTTC--CS-EEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----G
T ss_pred             CCCCCEEEEEEEEEE-C-CEEccccc--cc-CCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----C
Confidence            568999999999997 3 46888764  33 7899999999999999999999999999999999999988653     6


Q ss_pred             CCcEEEEEEEEeee
Q psy8368         109 KADLLFEVHLINFS  122 (372)
Q Consensus       109 ~~~~~~~iel~~~~  122 (372)
                      |+++.|.|+|++|+
T Consensus        72 Gk~~~f~V~v~~Vk   85 (85)
T d1hxva_          72 SKPVTFEVVLKAIK   85 (85)
T ss_dssp             SCCCEEEEEECCBC
T ss_pred             CCcEEEEEEEEEeC
Confidence            88999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=118.37  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=94.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..++..|++++|+..|++++...+..               ..++.++|.||.++|++++|+.+|+++++  
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~--  234 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALE--  234 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccccccccc---------------ccchhhhhhcccccccchhHHHHHHHHHH--
Confidence            3456788999999999999999999999887654               57899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                        ++|+++.+|+.+|.+|..+|++++|+..|++|++++|++.
T Consensus       235 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         235 --LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             --HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence              8999999999999999999999999999999999999987

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-12  Score=117.67  Aligned_cols=130  Identities=15%  Similarity=0.039  Sum_probs=79.5

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC-------------hHHHHHHHH------HHHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN-------------YEDQMQLEE------YLCRVYRNLMVCYN  215 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------l~~~l~~Nla~~~~  215 (372)
                      +..+...|..++..|++++|+..|++++...+..+...             ++....+..      ....++.+++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            45667788888888888888888888887754431000             000000000      01245556666666


Q ss_pred             HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      ++|+|++|+.+++++++    ++|+++.+++++|.+|..+|++++|+.+|++|++++|+++   .++..|+.+..+
T Consensus       317 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~---~a~~~lg~~~~~  385 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA---DAYSNMGNTLKE  385 (388)
T ss_dssp             TTTCHHHHHHHHHHHTT----SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH---HHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Confidence            66666666666666665    6666666666666666666666666666666666666666   666666655443

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.35  E-value=4.5e-13  Score=109.08  Aligned_cols=72  Identities=25%  Similarity=0.350  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeeccc-------------CCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYL-------------RKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYEL   95 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~-------------~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~   95 (372)
                      ++.||.|++||++++.+| ++||||+.             ... |++|.+|.+.++||||.+|.+|++|++..|.|||+.
T Consensus         2 v~~G~~V~v~Y~~~~~~G-~~fdsT~e~~~~~~~~~~~~~~~~-P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESG-DVFDTSIEEVAKEAGIYAPDREYE-PLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTTS-CCCEESCHHHHHHHTCCCSSCCCC-CEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTT
T ss_pred             ccCCCEEEEEEEEEECCC-CEEEeCchHhcccccccccccCCC-CEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHH
Confidence            578999999999999775 59999863             345 999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q psy8368          96 CFGALGC  102 (372)
Q Consensus        96 ~yg~~g~  102 (372)
                      |||....
T Consensus        80 ayG~~d~   86 (151)
T d1ix5a_          80 AYGNRNE   86 (151)
T ss_dssp             SSCSCCS
T ss_pred             hcccccc
Confidence            9998653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3e-12  Score=117.24  Aligned_cols=116  Identities=10%  Similarity=0.003  Sum_probs=57.3

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ-YKLTCDCASKALQF  233 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~-y~~Ai~~~~~aL~~  233 (372)
                      +..+...|..+.+.+.+++|+..|.+||.+.|..               ..+++|+|.|+..++. +++|+.+++++++ 
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~---------------~~a~~~r~~~l~~l~~~~~eal~~~~~al~-  106 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE-  106 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC---------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-
Confidence            4444455666666666666666666666665443               3444444444444432 4444444444444 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                         .+|++..+|+++|.++..+|++++|+.+|.++++++|+|.   .++..++.+...+
T Consensus       107 ---~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~---~a~~~~~~~~~~~  159 (315)
T d2h6fa1         107 ---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEF  159 (315)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH
T ss_pred             ---HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcch---HHHHHHHHHHHHH
Confidence               4444444444444444444444444444444444444444   4444444443333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-12  Score=95.16  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=76.7

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+++.|+.+++.|+|..|+..|++|+++.+..+.....        ...++.|+|.||.++|+|++|+.+++++|+  
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~--------~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--   74 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID--------KVSVLDYLSYAVYQQGDLDKALLLTKKLLE--   74 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCcc--------HHHHHHHHhhHHHhcCChHHHHHHHHHHHH--
Confidence            5667899999999999999999999999998765433221        157899999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhc
Q psy8368         235 SHFATKDVKLFFVWGKALIGL  255 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l  255 (372)
                        ++|++..|+.+++.....+
T Consensus        75 --l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          75 --LDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             --HCTTCHHHHHHHHHHHHHH
T ss_pred             --hCcCCHHHHHHHHHHHHHh
Confidence              9999999999998776544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.7e-12  Score=115.96  Aligned_cols=116  Identities=5%  Similarity=-0.020  Sum_probs=106.7

Q ss_pred             HHHHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         154 RAQELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ....+..+|+.+...| ++++|+..|.+++...+..               ..+++++|.++.++|++++|+.+++++++
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---------------~~a~~~~~~~~~~l~~~~eAl~~~~kal~  140 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------------YQVWHHRRVLVEWLRDPSQELEFIADILN  140 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---------------hhHHHHHhHHHHhhccHHHHHHHHhhhhh
Confidence            3578899999999876 5999999999999998776               78999999999999999999999999998


Q ss_pred             hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                          ++|+|..+|+.+|.++..++++++|+.+|+++++++|+|.   .++..++.+...
T Consensus       141 ----~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~---~a~~~r~~~l~~  192 (315)
T d2h6fa1         141 ----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN---SVWNQRYFVISN  192 (315)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHH
T ss_pred             ----hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH---HHHHHHHHHHHH
Confidence                9999999999999999999999999999999999999999   888777776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.8e-11  Score=110.84  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=116.4

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ...+...|+.++..|+|++|+..|.+++...+..               ...+.++|.+|.++|++++|+..++++++  
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--  265 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---------------AVVHGNLACVYYEQGLIDLAIDTYRRAIE--  265 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            5678899999999999999999999999876544               56778888888888888888888888887  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKM--------  306 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------  306 (372)
                        ++|+++.+++.+|.+|..+|++++|+..|++++...|.+.   .+...+..+....+++.++. ..|.+.        
T Consensus       266 --~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~  339 (388)
T d1w3ba_         266 --LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA---DSLNNLANIKREQGNIEEAV-RLYRKALEVFPEFA  339 (388)
T ss_dssp             --TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHHHH-HHHHHHTTSCTTCH
T ss_pred             --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccc---hhhhHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCH
Confidence              8888888888888888888888888888888888888888   77777777776666554432 233333        


Q ss_pred             ---------ccCCCCCCcchHHHhhhhhhccC
Q psy8368         307 ---------FSSSSSPSQHSNVVRIAYQEHEQ  329 (372)
Q Consensus       307 ---------~~~~~~~~~~~~~~~~~~~~~~~  329 (372)
                               +...+..+.+...++++++..|.
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                     33334444556666666665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.9e-11  Score=106.03  Aligned_cols=123  Identities=11%  Similarity=0.016  Sum_probs=100.4

Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368         169 KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW  248 (372)
Q Consensus       169 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~  248 (372)
                      .+++.|+..+.+++.....    .+       .....+++++|.||.++|+|++|+.+++++|+    ++|+++.+|+++
T Consensus        13 ~~~e~al~~~~e~l~~~~~----~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~~~a~~~l   77 (259)
T d1xnfa_          13 LQQEVILARMEQILASRAL----TD-------DERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYL   77 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCC----CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhc----CC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCCHHHHhhh
Confidence            4566777777777654221    11       12367899999999999999999999999998    999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368         249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS  310 (372)
Q Consensus       249 a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (372)
                      |.+|..+|++++|+.+|+++++++|++.   .++..++.+...++++.. ....+.+.+...
T Consensus        78 g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~-A~~~~~~al~~~  135 (259)
T d1xnfa_          78 GIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRDKL-AQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHhhhhhhHHHHHHhhhh---hhHHHHHHHHHHHhhHHH-HHHHHHHHHhhc
Confidence            9999999999999999999999999999   999999999887776654 344555554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.23  E-value=6.8e-11  Score=91.07  Aligned_cols=92  Identities=12%  Similarity=-0.030  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI  285 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l  285 (372)
                      .++++|.++++.|+|.+|+..++++++    .+|+++.+|+.+|.+|..++++++|+.+|++|++++|++.   .++..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~l   90 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAAL   90 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcc----cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc---cchHHH
Confidence            356899999999999999999999998    9999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy8368         286 LKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~  305 (372)
                      +.+...+++..++. ..+++
T Consensus        91 a~~y~~~g~~~~A~-~~l~~  109 (112)
T d1hxia_          91 AVSHTNEHNANAAL-ASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHCCCHHHHH-HHHHH
Confidence            99999998886653 44444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=1.8e-10  Score=96.38  Aligned_cols=119  Identities=10%  Similarity=-0.104  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC------C-hHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT------N-YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTC  224 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~------~-~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai  224 (372)
                      +..-..+...|+.++..|++.+|+..|.+|+.+.......      + ......+......++.+++.++.++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3567788899999999999999999999999987543211      1 23445667777899999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhcCC
Q psy8368         225 DCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA-------RKLAAK  274 (372)
Q Consensus       225 ~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a-------l~l~p~  274 (372)
                      .+|++++.    .+|.+..+|.+++.+|..+|++.+|+..|+++       +.++|.
T Consensus        88 ~~~~~al~----~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTF----EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHH----HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999998    99999999999999999999999999999998       456675

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.1e-11  Score=91.66  Aligned_cols=99  Identities=9%  Similarity=-0.019  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368         207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL  286 (372)
Q Consensus       207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~  286 (372)
                      +.+.|..+++.|+|++|+..|+++|+    .+|.++.+|+.+|.+|..+|++++|+.+|.++++++|++.   .+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g   78 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---KGYSRKA   78 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchhhhhcccccccccccccccchhhhhHHHhccchh---hHHHHHH
Confidence            45789999999999999999999998    9999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368         287 KADLGNQQYQKETKARCMKMFSSSSSP  313 (372)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
                      .+...++.+.+ ....|.+.+...+..
T Consensus        79 ~~~~~~~~~~~-A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          79 AALEFLNRFEE-AKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHTTCHHH-HHHHHHHHHTTCTTC
T ss_pred             HHHHHccCHHH-HHHHHHHHHHhCCCC
Confidence            99999888864 445666666555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.8e-11  Score=89.69  Aligned_cols=85  Identities=12%  Similarity=-0.029  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhhccC---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368         206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHF---ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID  282 (372)
Q Consensus       206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~---~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~  282 (372)
                      -++++|..+++.|+|.+|+.++++|+++.+..   .++...+++++|.+|..+|++++|+.+|++|++++|+++   .+.
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~---~a~   83 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ---RAN   83 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH---HHH
Confidence            35699999999999999999999999854322   233467899999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHH
Q psy8368         283 KEILKADLGNQ  293 (372)
Q Consensus       283 ~~l~~~~~~~~  293 (372)
                      ..+..+++.+.
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99888776653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.4e-11  Score=106.50  Aligned_cols=100  Identities=12%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      ..++|..+++.|+|.+|+..|+++++..|..               ..++.++|.||..+|+|++|+.++.++++    +
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~   82 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------MEAWQYLGTTQAENEQELLAISALRRCLE----L   82 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHhhhc----c
Confidence            3578999999999999999999999987665               67899999999999999999999999998    8


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      +|++..+++++|.+|..+|++++|+..+.+++.++|.+.
T Consensus        83 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccccccccccccccccccchhhHHHhccchH
Confidence            999999999999999999999999999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=6.8e-11  Score=99.69  Aligned_cols=93  Identities=11%  Similarity=0.112  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .-+.+.|.+|++.|+|++|+..|++||.    ++|+++.+|+++|.||..+|+|++|+.+|.+|++++|++.   .++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~---~a~~~   77 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH---HHHHH
Confidence            3456889999999999999999999998    9999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q psy8368         285 ILKADLGNQQYQKETKARCMK  305 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~  305 (372)
                      ++.+...++++.++. ..|++
T Consensus        78 lg~~~~~l~~~~~A~-~~~~~   97 (201)
T d2c2la1          78 LGQCQLEMESYDEAI-ANLQR   97 (201)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHH
T ss_pred             HHHHHHHCCCHHHHH-HHHHH
Confidence            999999988876654 34443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-10  Score=95.02  Aligned_cols=100  Identities=10%  Similarity=0.060  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .-+...|.+|++.|+|.+|+.+++++++    ++|+++.+|+++|.+|+.+|++++|+.+|++|++++|++.   .++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~---~a~~~   83 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccc----cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch---HHHHH
Confidence            3455789999999999999999999998    9999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         285 ILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      ++.+...++++.++. ..+.+.+...+.
T Consensus        84 ~g~~~~~~g~~~eA~-~~~~~a~~~~p~  110 (159)
T d1a17a_          84 RAASNMALGKFRAAL-RDYETVVKVKPH  110 (159)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence            999999998887554 345555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.6e-10  Score=91.07  Aligned_cols=83  Identities=11%  Similarity=0.041  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      +.-+.++|.+|+..|+|++|+.+|+++|+    ++|++..+++++|.+|..+|+|++|+.+|.+|++++|++.   .++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~---~~~~   76 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---EDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---TCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH---HHHH
Confidence            34566999999999999999999999998    9999999999999999999999999999999999999987   5555


Q ss_pred             HHHHHHHHHH
Q psy8368         284 EILKADLGNQ  293 (372)
Q Consensus       284 ~l~~~~~~~~  293 (372)
                      .++.+...++
T Consensus        77 ~~a~~~~~lg   86 (128)
T d1elra_          77 QIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555444333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=3.6e-09  Score=94.83  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      +.+..+...|+.|...|+|++|+..|.+|+.+.......         .-...+|.|+|.||.++++|++|+.+++++++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            446788899999999999999999999999987553211         11267899999999999999999999999998


Q ss_pred             hhccCCCC--chhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368         233 FASHFATK--DVKLFFVWGKALI-GLQEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMKM  306 (372)
Q Consensus       233 ~~~~~~p~--~~ka~~r~a~a~~-~l~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (372)
                      +....+..  ...++.++|.+|. .+|++++|+..|++|+++.+.+.   ....+...++.+....+++.++. ..|.++
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~-~~~~~~  184 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-DIYSKL  184 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH-HHHHHH
Confidence            55433211  2567889998885 47999999999999998865432   22345666777777777665433 345544


Q ss_pred             cc
Q psy8368         307 FS  308 (372)
Q Consensus       307 ~~  308 (372)
                      ..
T Consensus       185 ~~  186 (290)
T d1qqea_         185 IK  186 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.1e-09  Score=102.89  Aligned_cols=112  Identities=8%  Similarity=-0.061  Sum_probs=81.0

Q ss_pred             HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      .+...|..+.+.|++..|+..|.+++...+                 ..++.|+|.++..+++|++|+.+|.+|++    
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~----  180 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYIC-----------------QHCLVHLGDIARYRNQTSQAESYYRHAAQ----  180 (497)
T ss_dssp             ---------------------CCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH----
Confidence            344555556666666666666666655432                 35788999999999999999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368         237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN  292 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~  292 (372)
                      ++|++..+|+++|.+|...|++.+|+.+|.+|+.++|..+   .++..|..+....
T Consensus       181 l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~---~a~~nL~~~~~~~  233 (497)
T d1ya0a1         181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP---AASTNLQKALSKA  233 (497)
T ss_dssp             HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH---HHHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999   8988888776543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.86  E-value=5.5e-09  Score=85.97  Aligned_cols=90  Identities=12%  Similarity=0.025  Sum_probs=80.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+.+.|..+++.|+|.+|+..|.+||++.|..               ..+++++|.||..+|+|++|+.++.++++ 
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~l~~~~~A~~~~~~al~-  139 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQE-  139 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------------hhHHHhHHHHHHHccCHHHHHHHHHHHHH-
Confidence            45567788999999999999999999999987665               68899999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTSAI  262 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~  262 (372)
                         ++|+|..++..++.++..+..+.++.
T Consensus       140 ---l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         140 ---IAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             ---HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence               99999999999999988777666654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.86  E-value=1.3e-08  Score=83.77  Aligned_cols=88  Identities=8%  Similarity=-0.116  Sum_probs=79.4

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+.+.|..+++.|+|.+|+..|.+++.+.|..               ..+++++|.||..+|+|++|+.++.+++. 
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~-  126 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLE-  126 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            45567789999999999999999999999997665               68999999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcCCHHH
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQEWTS  260 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~  260 (372)
                         ++|+|..++..++.+...++.+.+
T Consensus       127 ---l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 ---VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             ---SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hCCCCHHHHHHHHHHHHHHHhHHH
Confidence               999999999999999877776654

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=3.7e-09  Score=80.06  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCCC
Q psy8368          29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPA  108 (372)
Q Consensus        29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip~  108 (372)
                      +..||.|+|+|++.. + |+.+.+..  .. .++|.+|.+.++++|+.+|.+|++|+...|.+.....|....     -+
T Consensus        15 a~~GD~v~id~~~~~-d-G~~~~~~~--~~-~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~-----la   84 (106)
T d1l1pa_          15 VEAEDRVTIDFTGSV-D-GEEFEGGK--AS-DFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN-----LK   84 (106)
T ss_dssp             CCTTEEEEEEEECCS-S-SSCCSTTE--EE-EEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTT-----TT
T ss_pred             ccCCCEEEEEEEEEE-C-CEECCCCc--cc-ceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchh-----hC
Confidence            678999999999876 3 44555432  22 689999999999999999999999999999998766665433     37


Q ss_pred             CCcEEEEEEEEeee
Q psy8368         109 KADLLFEVHLINFS  122 (372)
Q Consensus       109 ~~~~~~~iel~~~~  122 (372)
                      |.++.|.|+|.+|.
T Consensus        85 GK~v~f~V~v~~i~   98 (106)
T d1l1pa_          85 GKAAKFAINLKKVE   98 (106)
T ss_dssp             TCCEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEec
Confidence            88999999999998

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-08  Score=83.71  Aligned_cols=89  Identities=9%  Similarity=-0.060  Sum_probs=80.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+.+.|..+++.|+|.+|+..|.+||.+.|..               ..+++++|.||..+|+|++|+.+++++++  
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~--  124 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQ--  124 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccc---------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHH--
Confidence            3456789999999999999999999999997665               68999999999999999999999999998  


Q ss_pred             ccCCCCchhHHHHHHHHHHhcCCHHHHH
Q psy8368         235 SHFATKDVKLFFVWGKALIGLQEWTSAI  262 (372)
Q Consensus       235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~  262 (372)
                        ++|+|..+...++.++..++++....
T Consensus       125 --l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         125 --LYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             --HCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999988877666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=8.6e-08  Score=85.56  Aligned_cols=115  Identities=14%  Similarity=0.047  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-NKQYKLTCDCASKAL  231 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-l~~y~~Ai~~~~~aL  231 (372)
                      ..+..+.+.|+.|.+.|++.+|+..|.+++.+.......         .....++.++|.+|.. +++|++|+.++.+|+
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~  145 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999998654211         1225678899988865 799999999999999


Q ss_pred             HhhccCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368         232 QFASHFAT--KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS  276 (372)
Q Consensus       232 ~~~~~~~p--~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~  276 (372)
                      ++....+.  ....++.++|.+|..+|+|++|+..|++++.+.|.+.
T Consensus       146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            85543321  1456789999999999999999999999999998875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.77  E-value=1.5e-08  Score=81.92  Aligned_cols=84  Identities=11%  Similarity=-0.009  Sum_probs=75.8

Q ss_pred             HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368         154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF  233 (372)
Q Consensus       154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~  233 (372)
                      .+..+.+.|..+++.|+|.+|+..|.+||.+.|..               ..+++++|.||..+|+|++|+.++.++++ 
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------------~ka~~~~g~~~~~lg~~~~A~~~~~~al~-  129 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAAS-  129 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchh---------------hhhhHHhHHHHHHcCCHHHHHHHHHHHHH-
Confidence            35677889999999999999999999999997665               68999999999999999999999999998 


Q ss_pred             hccCCCCchhHHHHHHHHHHhcC
Q psy8368         234 ASHFATKDVKLFFVWGKALIGLQ  256 (372)
Q Consensus       234 ~~~~~p~~~ka~~r~a~a~~~l~  256 (372)
                         ++|+|..+...++.+...++
T Consensus       130 ---l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         130 ---LNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             ---HSTTCHHHHHHHHHHHHHHH
T ss_pred             ---hCCCCHHHHHHHHHHHHHHH
Confidence               99999999988888876553

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=2.8e-09  Score=81.80  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368          28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP  107 (372)
Q Consensus        28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip  107 (372)
                      ++..||.|+|+|+++.+  |+.+.+..  .. .+.|.+|.+.++|+|+.+|.+|++|++..|.++....|.....     
T Consensus        23 ~a~~gD~v~id~~~~~d--G~~~~~~~--~~-~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----   92 (113)
T d1t11a3          23 AAENGKRVSIDFVGSID--GVEFEGGK--AE-NFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----   92 (113)
T ss_dssp             CCCTTCEEEEEEEEESS--SSCCTTCE--EE-EEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----
T ss_pred             cccCCCEEEEEEEEEEC--CEEccCCc--cc-eEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----
Confidence            47899999999999863  34565432  23 7899999999999999999999999999998887666655333     


Q ss_pred             CCCcEEEEEEEEeee
Q psy8368         108 AKADLLFEVHLINFS  122 (372)
Q Consensus       108 ~~~~~~~~iel~~~~  122 (372)
                      +|.++.|.|+|.+++
T Consensus        93 aGk~~~f~v~v~~Ik  107 (113)
T d1t11a3          93 KGKAAKFAIKVNKVE  107 (113)
T ss_dssp             SSCEEEECCCEEEEE
T ss_pred             CCCeEEEEEEEEEEE
Confidence            688999999999998

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=4.7e-08  Score=88.83  Aligned_cols=121  Identities=3%  Similarity=-0.092  Sum_probs=104.5

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ--YKLTCDCASKA  230 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~--y~~Ai~~~~~a  230 (372)
                      .....+...++.+...|++.+|+..|++++...|..               ..++.++|.++..+++  +.+|+..+.++
T Consensus        71 ~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  135 (334)
T d1dcea1          71 EVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELELCARF  135 (334)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc---------------HHHHHHhhHHHHHhccccHHHHHHHHHHH
Confidence            334556667777888889999999999999987766               6788999999888875  89999999999


Q ss_pred             HHhhccCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368         231 LQFASHFATKDVKLF-FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       231 L~~~~~~~p~~~ka~-~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~  295 (372)
                      +.    .+|.+..++ +.+|.++...+.+++|+..++++++++|++.   .++..++.+...++.+
T Consensus       136 l~----~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~---~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         136 LE----ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY---SSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HH----HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH---HHHHHHHHHHHHHSCC
T ss_pred             Hh----hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCH
Confidence            98    899999986 5778999999999999999999999999999   9998888887776543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=8.4e-08  Score=73.75  Aligned_cols=83  Identities=10%  Similarity=0.003  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhhccCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368         204 CRVYRNLMVCYNNN---KQYKLTCDCASKALQFASHFATKD-VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA  279 (372)
Q Consensus       204 ~~l~~Nla~~~~kl---~~y~~Ai~~~~~aL~~~~~~~p~~-~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~  279 (372)
                      ....+|.|.|+.+-   .+..+||..++.+++    .+|.+ ..++|.+|.+|..+|+|+.|+.+++++|+++|+|.   
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~----~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~---  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH---
Confidence            45678889999865   456799999999997    67765 57999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHHHHH
Q psy8368         280 EIDKEILKADLGNQ  293 (372)
Q Consensus       280 ~~~~~l~~~~~~~~  293 (372)
                      .+......+.+++.
T Consensus       108 qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1         108 QVGALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88877777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.61  E-value=6.6e-08  Score=77.40  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             HHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368         213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL----------QEWTSAIKHLKTARKLAAKDSVRAEID  282 (372)
Q Consensus       213 ~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l----------~~~e~A~~~~~~al~l~p~~~~~~~~~  282 (372)
                      -|-+++.|++|+..+++|++    ++|+++.+++++|.++..+          +.+++|+..|++|++++|++.   .+.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~----~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~---~a~   78 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYK----SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAV   78 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHH
T ss_pred             HHHHHccHHHHHHHHHHHHh----hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh---HHH
Confidence            46678899999999999998    9999999999999999854          556899999999999999999   999


Q ss_pred             HHHHHHHHHHHH
Q psy8368         283 KEILKADLGNQQ  294 (372)
Q Consensus       283 ~~l~~~~~~~~~  294 (372)
                      ..++.+...+..
T Consensus        79 ~~lG~~y~~~g~   90 (145)
T d1zu2a1          79 WCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHccc
Confidence            999988776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.6e-07  Score=72.80  Aligned_cols=101  Identities=7%  Similarity=0.022  Sum_probs=83.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368         208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ---EWTSAIKHLKTARKLAAKDSVRAEIDKE  284 (372)
Q Consensus       208 ~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~---~~e~A~~~~~~al~l~p~~~~~~~~~~~  284 (372)
                      .|++..+...++|.+|...|+++|.    ++|+++.++|++|.|+...+   ++.+|+..|++++..+|++. ...+...
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~----~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~-~~~~~~~   77 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA----AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFY   77 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-HHHHHHH
Confidence            4778889999999999999999998    99999999999999998755   55679999999999998664 1257889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy8368         285 ILKADLGNQQYQKETKARCMKMFSSSSSPS  314 (372)
Q Consensus       285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (372)
                      |+.+...++++.+ ....|.+++...+...
T Consensus        78 Lg~~y~~~g~~~~-A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          78 LAVGNYRLKEYEK-ALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHHHHHHTTCHHH-HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhhhHH-HHHHHHHHHHhCcCCH
Confidence            9999999888854 4567777777666553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=9.5e-07  Score=78.61  Aligned_cols=131  Identities=12%  Similarity=-0.034  Sum_probs=97.4

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      ++...-.|..++..|++++|+..|++++...+...   .       .....++.++|.+|..+|+|++|+..+.++++..
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~---~-------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   81 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW---F-------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA   81 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC---H-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC---c-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            44455579999999999999999999999865431   1       1225678899999999999999999999999855


Q ss_pred             ccCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----ccHHHHHHHHHHHHHHHHHH
Q psy8368         235 SHFAT--KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-----SVRAEIDKEILKADLGNQQY  295 (372)
Q Consensus       235 ~~~~p--~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~-----~~~~~~~~~l~~~~~~~~~~  295 (372)
                      ...+.  ....+++.++.++...+++..|...+.+++.+.+..     ...+.+...++.+.......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  149 (366)
T d1hz4a_          82 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL  149 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence            43322  245678999999999999999999999999875422     11223444455554444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=3.4e-06  Score=76.03  Aligned_cols=123  Identities=10%  Similarity=-0.031  Sum_probs=91.4

Q ss_pred             hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHhhcc
Q psy8368         167 NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV----------CYNNNKQYKLTCDCASKALQFASH  236 (372)
Q Consensus       167 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~----------~~~kl~~y~~Ai~~~~~aL~~~~~  236 (372)
                      +...+++|+..|.++|...|..               ..++++++.          ++...+++.+|+.+++++++    
T Consensus        41 ~~~~~~~al~~~~~~l~~~P~~---------------~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~----  101 (334)
T d1dcea1          41 AGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----  101 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred             cccccHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----
Confidence            3334589999999999987665               344444444          45555668999999999998    


Q ss_pred             CCCCchhHHHHHHHHHHhcCC--HHHHHHHHHHHHhhcCCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         237 FATKDVKLFFVWGKALIGLQE--WTSAIKHLKTARKLAAKDSVRAEIDK-EILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       237 ~~p~~~ka~~r~a~a~~~l~~--~e~A~~~~~~al~l~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .+|++..+++.+|.++..+++  +++|+..+.++++++|.+.   .+.. .+..+....+.. ..+...+.+++...+.
T Consensus       102 ~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~-~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAP-AEELAFTDSLITRNFS  176 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTCCCH-HHHHHHHHTTTTTTCC
T ss_pred             hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh---hhhhhHHHHHHHhcccc-HHHHHHHHHHHHcCCC
Confidence            999999999999999888765  8999999999999999998   6654 444454444443 3344566666655544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.41  E-value=8.6e-07  Score=78.07  Aligned_cols=91  Identities=11%  Similarity=0.061  Sum_probs=78.6

Q ss_pred             hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368         162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD  241 (372)
Q Consensus       162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~  241 (372)
                      +..+++.|++++|+..|+++++..|..               ..++.+++.+|+..|+|++|+..++.+++    ++|++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d---------------~~ar~~La~lL~~~G~~e~A~~~l~~a~~----l~P~~   63 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKD---------------ASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEY   63 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCc
Confidence            567899999999999999999997776               78999999999999999999999999998    89999


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368         242 VKLFFVWGKALIGLQEWTSAIKHLKTARKL  271 (372)
Q Consensus       242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l  271 (372)
                      ..++..++.++...+...++...+.+...+
T Consensus        64 ~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          64 LPGASQLRHLVKAAQARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCCEECC
T ss_pred             HHHHHHHHHHHHhccccHHHHHHhhhhhcc
Confidence            999999988888777777666555444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4e-07  Score=87.70  Aligned_cols=111  Identities=8%  Similarity=-0.037  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK  283 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~  283 (372)
                      ...+.|+|.++.+.+++.+|+..+.++++    .+  ...+++++|.++..+++|++|+.+|++|++++|++.   .+..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~--~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~---~~~~  190 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS----YI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---QPYN  190 (497)
T ss_dssp             -----------------------CCHHHH----HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---HHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch---HHHH
Confidence            45788999999999999999999999997    43  357899999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhh
Q psy8368         284 EILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAY  324 (372)
Q Consensus       284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (372)
                      .|+.+....++..++. ..|.+.+......+.+.......+
T Consensus       191 ~Lg~~~~~~~~~~~A~-~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         191 QLAILASSKGDHLTTI-FYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHTTCHHHHH-HHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHH-HHHHHHHhCCCCCHHHHHHHHHHH
Confidence            9999998877765544 556665555555444444443333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.1e-06  Score=78.19  Aligned_cols=110  Identities=12%  Similarity=0.007  Sum_probs=90.1

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA  234 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~  234 (372)
                      +..+...|..+...|++..|...|.+++...+....           .....+.|+|.+|+.+|+|++|+..+++++...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-----------FLQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-----------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            445677888899999999999999998876543211           114567899999999999999999999998644


Q ss_pred             cc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368         235 SH--FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       235 ~~--~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~  275 (372)
                      ..  ..|....+++.+|.+|..+|++++|+..|++|+++.+..
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            32  346678899999999999999999999999999987643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.28  E-value=3.1e-06  Score=67.96  Aligned_cols=79  Identities=6%  Similarity=-0.053  Sum_probs=64.3

Q ss_pred             HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368         153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ  232 (372)
Q Consensus       153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~  232 (372)
                      ..+..+.+.|..+++.|+|..|+..|.+++.+.+.........    ......+++|+|.||.++|+|++|+.+++++++
T Consensus        53 ~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          53 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999987653322211    122356799999999999999999999999998


Q ss_pred             hhc
Q psy8368         233 FAS  235 (372)
Q Consensus       233 ~~~  235 (372)
                      +.+
T Consensus       129 l~~  131 (156)
T d2hr2a1         129 MIE  131 (156)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.14  E-value=4.3e-06  Score=73.41  Aligned_cols=75  Identities=15%  Similarity=0.005  Sum_probs=67.4

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368         212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG  291 (372)
Q Consensus       212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~  291 (372)
                      .-.++.|++++|+..++++++    .+|+|..++..+|.+|..+|++++|+..|+++++++|++.   .+...+..+...
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~----~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~---~~~~~l~~ll~a   76 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIK----ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL---PGASQLRHLVKA   76 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHH----TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHh
Confidence            445778999999999999998    9999999999999999999999999999999999999999   877777776554


Q ss_pred             HH
Q psy8368         292 NQ  293 (372)
Q Consensus       292 ~~  293 (372)
                      ..
T Consensus        77 ~~   78 (264)
T d1zbpa1          77 AQ   78 (264)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=3.6e-05  Score=68.44  Aligned_cols=133  Identities=12%  Similarity=-0.048  Sum_probs=96.3

Q ss_pred             HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368         158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF  237 (372)
Q Consensus       158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~  237 (372)
                      +...+......|+++.|...|.+++...+...              ..++...+.+..+.++++.|+..+.++++    .
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~----~  163 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKARE----D  163 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHT----S
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHH----h
Confidence            34456666677888888888888877644321              34567777788888888888888888886    7


Q ss_pred             CCCchhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368         238 ATKDVKLFFVWGKAL-IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS  312 (372)
Q Consensus       238 ~p~~~ka~~r~a~a~-~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
                      .|.+...+...|... ...|+.+.|...|+++++..|++.   .++..+.......++. ...+..|.+.+.....
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~---~~w~~y~~~~~~~g~~-~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP---EYVLAYIDYLSHLNED-NNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHTTCCH-HHHHHHHHHHHHSSSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCC
Confidence            788888888777664 446788888888888888888888   7777777776666544 3466777776665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=1.9e-05  Score=64.95  Aligned_cols=89  Identities=11%  Similarity=-0.019  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC----------------------chhHHHHHHHHHHhcCCHHHH
Q psy8368         204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK----------------------DVKLFFVWGKALIGLQEWTSA  261 (372)
Q Consensus       204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~----------------------~~ka~~r~a~a~~~l~~~e~A  261 (372)
                      ...+.+.|......|++++|+..|.+||.    +.+.                      ...++.+++.++..+|++++|
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~----l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALR----EWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            45678899999999999999999999997    4332                      236899999999999999999


Q ss_pred             HHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368         262 IKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET  299 (372)
Q Consensus       262 ~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (372)
                      +.+++++++++|.+.   .++..+..+....+...+..
T Consensus        87 l~~~~~al~~~P~~e---~~~~~l~~al~~~Gr~~eAl  121 (179)
T d2ff4a2          87 IAELEALTFEHPYRE---PLWTQLITAYYLSDRQSDAL  121 (179)
T ss_dssp             HHHHHHHHHHSTTCH---HHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHhCCccH---HHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999   99999999988877665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=5.9e-05  Score=66.99  Aligned_cols=141  Identities=11%  Similarity=0.007  Sum_probs=101.4

Q ss_pred             hccCHHHHHHHHHHHHHhh-hhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc-hhH
Q psy8368         167 NDKNIVSAVRRYRDAVKLL-INTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD-VKL  244 (372)
Q Consensus       167 ~~g~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-~ka  244 (372)
                      ..+.++.|...|.+|+..+ +..               ..++...+..+.++|+++.|...++++|+    ..|.+ ..+
T Consensus        76 ~~~~~~~a~~i~~ral~~~~p~~---------------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~----~~~~~~~~~  136 (308)
T d2onda1          76 AKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPTLV  136 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHhcccHHHHHHHHHHHHH----HhcCChHHH
Confidence            4455678888999998753 222               46888899999999999999999999997    77765 457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hc
Q psy8368         245 FFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMK-----------------MF  307 (372)
Q Consensus       245 ~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~  307 (372)
                      |...+......++++.|+..|.++++..|.+.   .+....+.+...........+..|..                 +.
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~---~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRH---HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT---HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            88999999999999999999999999999998   66666555443322222223333333                 33


Q ss_pred             cCCCCCCcchHHHhhhhhhccC
Q psy8368         308 SSSSSPSQHSNVVRIAYQEHEQ  329 (372)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~  329 (372)
                      ...+..+++...++++++..+.
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHcCChHHHHHHHHHHHHhCCC
Confidence            3344444455667777766554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=3.9e-05  Score=58.46  Aligned_cols=80  Identities=8%  Similarity=-0.050  Sum_probs=61.3

Q ss_pred             HHHHHHhhHHHHhc---cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFND---KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL  231 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL  231 (372)
                      ++..++.|-.+.+.   .+.++|+..+..+++..+..              ...+++++|.+|+++|+|++|+.+|+++|
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35667777777754   34567888887777653321              15799999999999999999999999999


Q ss_pred             HhhccCCCCchhHHHHHHHHH
Q psy8368         232 QFASHFATKDVKLFFVWGKAL  252 (372)
Q Consensus       232 ~~~~~~~p~~~ka~~r~a~a~  252 (372)
                      +    ++|+|..|..-+-.+.
T Consensus       101 ~----ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         101 E----HERNNKQVGALKSMVE  117 (124)
T ss_dssp             H----HCTTCHHHHHHHHHHH
T ss_pred             c----cCCCcHHHHHHHHHHH
Confidence            8    9999999876554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.54  E-value=0.00067  Score=58.12  Aligned_cols=98  Identities=20%  Similarity=0.209  Sum_probs=82.0

Q ss_pred             HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q psy8368         155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCDCASKA  230 (372)
Q Consensus       155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~~~~~a  230 (372)
                      +..+...|..++.+++|.+|+..|++|.+.-  .               ..++.++|.+|..    .+++..|+.++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            3567889999999999999999999998652  1               4678899999998    77999999999999


Q ss_pred             HHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCC
Q psy8368         231 LQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAKD  275 (372)
Q Consensus       231 L~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~~  275 (372)
                      .+      +.++.+.+.+|.++..    ..+++.|...++++....+..
T Consensus        65 ~~------~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          65 CD------LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cc------ccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            85      5688899999988875    568899999999998765543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.31  E-value=0.0014  Score=50.29  Aligned_cols=83  Identities=20%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhccCCCCchh
Q psy8368         168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCDCASKALQFASHFATKDVK  243 (372)
Q Consensus       168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~~~~~aL~~~~~~~p~~~k  243 (372)
                      ..++++|+..|+++.+.-.                 ....+++|.+|..    ..++.+|+.+++++.+      ..++.
T Consensus        36 ~~~~~~a~~~~~~aa~~g~-----------------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~------~g~~~   92 (133)
T d1klxa_          36 QINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG------LNDQD   92 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH------TTCHH
T ss_pred             ccCHHHHHHHHhhhhcccc-----------------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhc------cCcch
Confidence            3467777777777765411                 3566778888876    5578888888888875      36778


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHhhcC
Q psy8368         244 LFFVWGKALIG----LQEWTSAIKHLKTARKLAA  273 (372)
Q Consensus       244 a~~r~a~a~~~----l~~~e~A~~~~~~al~l~p  273 (372)
                      |.+++|.+|..    ..++.+|+.+|++|.++..
T Consensus        93 a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          93 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            88888888876    4688888888888877644

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.0033  Score=53.50  Aligned_cols=65  Identities=25%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCC
Q psy8368         204 CRVYRNLMVCYNN----NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAK  274 (372)
Q Consensus       204 ~~l~~Nla~~~~k----l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~  274 (372)
                      ..+++|+|.+|..    .+++.+|+.++.++.+    .  +++.|++++|.+|..    ..++++|+.+|++|..+...
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~----~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACE----L--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----T--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhc----c--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            4678899999987    7799999999999986    4  678999999999986    44899999999999887754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.86  E-value=0.0034  Score=47.95  Aligned_cols=92  Identities=16%  Similarity=0.042  Sum_probs=70.6

Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368         169 KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW  248 (372)
Q Consensus       169 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~  248 (372)
                      .++.+|+..|++|.+.-.                 .....+++.  ....++++|+.+++++.+      .+++.+++++
T Consensus         7 kd~~~A~~~~~kaa~~g~-----------------~~a~~~l~~--~~~~~~~~a~~~~~~aa~------~g~~~a~~~L   61 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE-----------------MFGCLSLVS--NSQINKQKLFQYLSKACE------LNSGNGCRFL   61 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC-----------------TTHHHHHHT--CTTSCHHHHHHHHHHHHH------TTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC-----------------hhhhhhhcc--ccccCHHHHHHHHhhhhc------ccchhhhhhH
Confidence            578999999999987521                 123445553  345789999999999985      5789999999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368         249 GKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL  290 (372)
Q Consensus       249 a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~  290 (372)
                      |..|..    ..+++.|+.+|+++.+.  .++   .+...|..+..
T Consensus        62 g~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~---~a~~~Lg~~y~  102 (133)
T d1klxa_          62 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQ---DGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCH---HHHHHHHHHHH
T ss_pred             HHhhhhccccchhhHHHHHHHhhhhcc--Ccc---hHHHHHHHHHH
Confidence            999986    56899999999999876  455   66666666543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.85  E-value=0.53  Score=32.90  Aligned_cols=37  Identities=11%  Similarity=0.123  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      .+..|..+...|..+-..|+|..|+.+|..|+.++-.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4678888899999999999999999999999998855

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.57  Score=31.42  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368         151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN  187 (372)
Q Consensus       151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~  187 (372)
                      .++.+..+-..|..+=..|+|..|+.+|..|+.++-.
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~   43 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   43 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5788888999999999999999999999999998744

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.66  E-value=0.48  Score=31.93  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368         152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT  188 (372)
Q Consensus       152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~  188 (372)
                      ++.|-.+-.++..+.+.|+|++|+.++++|..++...
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            5678888889999999999999999999999998654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.94  E-value=5.3  Score=26.59  Aligned_cols=26  Identities=15%  Similarity=0.113  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368         244 LFFVWGKALIGLQEWTSAIKHLKTAR  269 (372)
Q Consensus       244 a~~r~a~a~~~l~~~e~A~~~~~~al  269 (372)
                      -+-|+|..++..|.|++|+++.++|.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566777777777777766665554