Psyllid ID: psy8372
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 883 | 2.2.26 [Sep-21-2011] | |||||||
| Q3KRD0 | 652 | Aspartate--tRNA ligase, m | yes | N/A | 0.225 | 0.305 | 0.549 | 3e-60 | |
| A6QPU5 | 651 | Aspartate--tRNA ligase, m | yes | N/A | 0.221 | 0.301 | 0.550 | 2e-59 | |
| Q8BIP0 | 653 | Aspartate--tRNA ligase, m | yes | N/A | 0.225 | 0.304 | 0.553 | 3e-59 | |
| Q6PI48 | 645 | Aspartate--tRNA ligase, m | yes | N/A | 0.219 | 0.300 | 0.545 | 1e-58 | |
| Q73MC2 | 590 | Aspartate--tRNA ligase OS | yes | N/A | 0.225 | 0.337 | 0.540 | 2e-57 | |
| Q3AA17 | 592 | Aspartate--tRNA ligase OS | yes | N/A | 0.223 | 0.332 | 0.521 | 3e-52 | |
| Q9RUN7 | 577 | Aspartate--tRNA ligase OS | yes | N/A | 0.225 | 0.344 | 0.516 | 7e-52 | |
| B2V713 | 602 | Aspartate--tRNA ligase OS | yes | N/A | 0.224 | 0.328 | 0.514 | 2e-51 | |
| C1CV34 | 577 | Aspartate--tRNA ligase OS | yes | N/A | 0.228 | 0.350 | 0.5 | 3e-51 | |
| Q6MTR3 | 574 | Aspartate--tRNA ligase OS | yes | N/A | 0.221 | 0.341 | 0.529 | 3e-51 |
| >sp|Q3KRD0|SYDM_RAT Aspartate--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Dars2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 148/204 (72%), Gaps = 5/204 (2%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A +LN A +PF IK++ K E LRL++RYLD R +MQHNLR RS+ +M+ R
Sbjct: 139 EIKAKTAELLN-ACKKLPFEIKDFVKKTEALRLQYRYLDLRSSQMQHNLRLRSQMVMKMR 197
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L T FV++ETPTLFKRTPGGA+EF+VP+ EP +FYSL QSPQQ KQLLMVG +DRY
Sbjct: 198 EYLCTLHGFVDIETPTLFKRTPGGAKEFLVPSREPGRFYSLPQSPQQFKQLLMVGGLDRY 257
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL----NIPTRTFSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + L+E LL Y + F
Sbjct: 258 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQHLVEGLLHYSWPEDKDPLVAPFPS 317
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 318 MTFAEALATYGTDKPDTRFGMKIV 341
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Rattus norvegicus (taxid: 10116) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|A6QPU5|SYDM_BOVIN Aspartate--tRNA ligase, mitochondrial OS=Bos taurus GN=DARS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 11/207 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 137 EIKVKTAKLLNSCK-KLPFEIKDFMKKTETLRLQYRYLDLRSVQMQYNLRLRSQMVMKMR 195
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV+VETPTLFKRTPGGA+EFV+P+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 196 EYLCNLHGFVDVETPTLFKRTPGGAKEFVIPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 255
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + V LIE LL Y L +P
Sbjct: 256 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGVQSLIEGLLQYSWPSDKDPLVVP--- 312
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F + + +A++ YG+DKPD R+ KI+
Sbjct: 313 FPSMPFAEALASYGTDKPDTRFGMKIV 339
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Bos taurus (taxid: 9913) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q8BIP0|SYDM_MOUSE Aspartate--tRNA ligase, mitochondrial OS=Mus musculus GN=Dars2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 148/204 (72%), Gaps = 5/204 (2%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 139 EIKVKTAELLN-ACKKLPFEIKDFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 197
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 198 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 257
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL---NIPTRT-FSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + RL+E LL Y P T F
Sbjct: 258 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVEQTGIQRLVEGLLQYSWPGDKDPLVTPFPS 317
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 318 MTFAEALATYGTDKPDTRFGMKIV 341
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Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q6PI48|SYDM_HUMAN Aspartate--tRNA ligase, mitochondrial OS=Homo sapiens GN=DARS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 146/209 (69%), Gaps = 15/209 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IKN+ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 140 EIKVKTAELLN-ACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 198
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 199 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 258
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY---------CLNIPT 470
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + LIE LL Y + PT
Sbjct: 259 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPT 318
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKIM 499
TF+ + ++ YG+DKPD R+ KI+
Sbjct: 319 MTFAEV-----LATYGTDKPDTRFGMKII 342
|
Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q73MC2|SYD_TREDE Aspartate--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 149/209 (71%), Gaps = 10/209 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A I VL+K++V +PF I A EDLRLK+RYLD R MQ ++ RSKF R
Sbjct: 98 EVKALKIEVLSKSEV-LPFQIDEKTNANEDLRLKYRYLDLRSKAMQEHIMLRSKFTFAVR 156
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
EFL T +DF+E+ETPT K TP GAR+++VP+ P KFY+L QSPQ KQ+LMV D+
Sbjct: 157 EFL-TSKDFLEIETPTFIKSTPEGARDYLVPSRLYPGKFYALPQSPQIYKQILMVSGFDK 215
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPTRT 472
YFQIARCYRDE R DRQPEFTQ+D+E+SF +R+DV+ L E ++ Y +++P +T
Sbjct: 216 YFQIARCYRDEDARGDRQPEFTQIDLEMSFASREDVLSLTEGMMQYAFKKSINVDLP-KT 274
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIMIA 501
F RISY++AI +YG+DKPDLR++ K+ A
Sbjct: 275 FERISYDEAIDIYGTDKPDLRFEMKMQDA 303
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Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) (taxid: 243275) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q3AA17|SYD_CARHZ Aspartate--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 139/205 (67%), Gaps = 8/205 (3%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV AS + VLNKA PF+I++ E +RL++RYLD R PEMQ L R K R
Sbjct: 96 EVYASKVEVLNKAKTP-PFYIEDGIDVDEQVRLRYRYLDLRRPEMQRALELRHKAAKAVR 154
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL H F E+ETP L K TP GAR+F+VP+ P KFY+L QSPQ KQ+LMV ++R
Sbjct: 155 DFLDRH-GFWEIETPMLTKSTPEGARDFLVPSRLNPGKFYALPQSPQIFKQILMVAGMER 213
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRT-F 473
YFQI RC+RDE R DRQPEFTQ+DIE+SF R+D+M L+EE++ Y + + +T F
Sbjct: 214 YFQIVRCFRDEDLRADRQPEFTQIDIEMSFIDREDIMSLMEEMIAYVFKEAIGVEVKTPF 273
Query: 474 SRISYNDAISLYGSDKPDLRYDCKI 498
RISY +A+ YG+DKPDLR+ +I
Sbjct: 274 KRISYQEAMLKYGTDKPDLRFGLEI 298
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Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q9RUN7|SYD_DEIRA Aspartate--tRNA ligase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 136/209 (65%), Gaps = 10/209 (4%)
Query: 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKF 354
GL EVIAS + VLN A PF + ED+RLK+RYLD R PEMQ L RSK
Sbjct: 87 GLADFEVIASRVKVLNAAKTP-PFELDKGESVAEDIRLKYRYLDLRRPEMQRALMLRSKA 145
Query: 355 LMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMV 413
+ EFL F++VETP L K TP GAR+F+VP+ P +FY+L QSPQ KQLLM+
Sbjct: 146 VTAVTEFLDAE-GFIQVETPMLTKSTPEGARDFLVPSRLNPGEFYALPQSPQLFKQLLMI 204
Query: 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LN 467
DRY+Q+ARC+RDE R DRQP+FTQLD+E+SF +DDV+ + E LL + +
Sbjct: 205 AGFDRYYQLARCFRDEDLRADRQPDFTQLDMEMSFVEQDDVLEVQERLLAHVFRRVLDVE 264
Query: 468 IPTRTFSRISYNDAISLYGSDKPDLRYDC 496
+P F R+SY DA+ YGSDKPDLR+D
Sbjct: 265 LPL-PFPRMSYFDAMDRYGSDKPDLRFDS 292
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Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|B2V713|SYD_SULSY Aspartate--tRNA ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 140/206 (67%), Gaps = 8/206 (3%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV + +LN + +PF I++ K E++RLK+RYLD R P MQ N+ R + R
Sbjct: 103 EVAGEELLILNTSKA-LPFPIEDNIKVSEEVRLKYRYLDLRRPSMQRNIILRHEVYQAVR 161
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
EFLA + F+EVETP L K TP GAR+F+VP+ E KFY+L QSPQ KQ+LMV ++R
Sbjct: 162 EFLAGN-GFIEVETPMLTKSTPEGARDFLVPSRLEKGKFYALPQSPQLFKQILMVAGLER 220
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRT-F 473
YFQIA+C+RDE R DRQPEFTQ+D+E+SF T DDVM L E L+ Y L I + F
Sbjct: 221 YFQIAKCFRDEDLRADRQPEFTQIDLEMSFVTEDDVMTLAESLIQYVYKKVLGIDIKIPF 280
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
R+SY +AI+ YG+DKPDLRY +++
Sbjct: 281 RRMSYEEAINKYGTDKPDLRYGLELI 306
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Sulfurihydrogenibium sp. (strain YO3AOP1) (taxid: 436114) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|C1CV34|SYD_DEIDV Aspartate--tRNA ligase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 139/212 (65%), Gaps = 10/212 (4%)
Query: 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKF 354
G EVIAS + VLN A PF + ED+RLK+RYLD R PEMQ +L RS+
Sbjct: 86 GAADYEVIASRVKVLNTAKTP-PFELDKGESVAEDIRLKYRYLDLRRPEMQRHLLLRSRA 144
Query: 355 LMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMV 413
+ FL + FV+VETP L K TP GAR+F+VP+ P +FY+L QSPQ KQLLM+
Sbjct: 145 MAAVTAFLDSS-GFVQVETPMLTKSTPEGARDFLVPSRLNPGEFYALPQSPQLFKQLLMI 203
Query: 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LN 467
DRY+Q ARC+RDE R DRQP+FTQLD+E+SF +DDV+ L E L+ + ++
Sbjct: 204 AGYDRYYQFARCFRDEDLRADRQPDFTQLDMEMSFVEQDDVLELQEGLMAHVFKATLDVD 263
Query: 468 IPTRTFSRISYNDAISLYGSDKPDLRYDCKIM 499
+P R F R+SY DA+ YGSDKPDLR++ ++
Sbjct: 264 LP-RPFPRLSYFDAMDRYGSDKPDLRFESALV 294
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Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) (taxid: 546414) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q6MTR3|SYD_MYCMS Aspartate--tRNA ligase OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1) GN=aspS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 138/206 (66%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EVI + ++NK+++ PF ++N ED RL +RYLD R P MQ+NL R+K R
Sbjct: 89 EVIVKELFIINKSELT-PFVLENDVNVNEDTRLTYRYLDLRRPVMQNNLIIRAKINHIIR 147
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
FL T +F+EVETP K TP GAR+F+VP+ NKFY+L QSPQ KQLLM+ +DR
Sbjct: 148 NFL-TDSNFLEVETPYFAKSTPEGARDFLVPSRLNKNKFYALPQSPQLFKQLLMISGIDR 206
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFS---- 474
Y+QI RC+RDE R DRQPEFTQLD+E+SF T +DVM++ E L+ L + F
Sbjct: 207 YYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSEDVMQISESLIKKILK-EVKNFEIKEP 265
Query: 475 --RISYNDAISLYGSDKPDLRYDCKI 498
R+SY DAI LYGSDKPDLRYD KI
Sbjct: 266 LLRLSYKDAIDLYGSDKPDLRYDLKI 291
|
Mycoplasma mycoides subsp. mycoides SC (strain PG1) (taxid: 272632) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 883 | ||||||
| 326910915 | 645 | aspartyl-tRNA synthetase, mitochondrial | 0.221 | 0.303 | 0.631 | 3e-70 | |
| 195436782 | 1078 | GK18240 [Drosophila willistoni] gi|19416 | 0.220 | 0.180 | 0.648 | 1e-69 | |
| 195387357 | 1132 | GJ17510 [Drosophila virilis] gi|19414881 | 0.217 | 0.169 | 0.633 | 3e-69 | |
| 195115020 | 1190 | GI14195 [Drosophila mojavensis] gi|19391 | 0.217 | 0.161 | 0.638 | 3e-69 | |
| 195579672 | 887 | GD24088 [Drosophila simulans] gi|1941916 | 0.217 | 0.216 | 0.633 | 9e-69 | |
| 194884465 | 1145 | GG22777 [Drosophila erecta] gi|190659455 | 0.217 | 0.167 | 0.633 | 1e-68 | |
| 24584738 | 1082 | CG31739, isoform A [Drosophila melanogas | 0.217 | 0.177 | 0.633 | 1e-68 | |
| 195483970 | 1141 | GE12772 [Drosophila yakuba] gi|194176608 | 0.217 | 0.168 | 0.628 | 1e-68 | |
| 195052814 | 1125 | GH13102 [Drosophila grimshawi] gi|193900 | 0.217 | 0.170 | 0.628 | 1e-68 | |
| 194760025 | 1132 | GF15370 [Drosophila ananassae] gi|190615 | 0.217 | 0.169 | 0.628 | 2e-68 |
| >gi|326910915|ref|NP_001192099.1| aspartyl-tRNA synthetase, mitochondrial [Acyrthosiphon pisum] gi|328698565|ref|XP_003240672.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/206 (63%), Positives = 157/206 (76%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EVI + +LN D +PF ++ +NKA E LRLK+RYLD R+PEMQ+NLR RSK LM+ R
Sbjct: 169 EVIVDQLLLLNAVDTKLPFQLRKFNKANESLRLKYRYLDLRYPEMQYNLRLRSKLLMKMR 228
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
EFL HR+FVEVETPTLFK+T GGA+EF+VPTHE K YSLVQSPQQLKQ+LMVGS+DRY
Sbjct: 229 EFLINHREFVEVETPTLFKKTHGGAQEFIVPTHEKGKCYSLVQSPQQLKQMLMVGSMDRY 288
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+A+CYRDE + DRQPEFTQLDIE+SFT +D VM LIEELL + + IP
Sbjct: 289 FQVAKCYRDEGAKSDRQPEFTQLDIEMSFTNQDGVMLLIEELLSFVWPSELGKIKIP--- 345
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKI 498
F R+SY +A+ YGSDKPD+ KI
Sbjct: 346 FPRLSYEEAMVTYGSDKPDIGRSTKI 371
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195436782|ref|XP_002066334.1| GK18240 [Drosophila willistoni] gi|194162419|gb|EDW77320.1| GK18240 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/199 (64%), Positives = 154/199 (77%), Gaps = 4/199 (2%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A N+TVLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 500 EVEADNVTVLNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSSVIMKMR 559
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 560 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGMDRY 619
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC----LNIPTRTFSR 475
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L+ F R
Sbjct: 620 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKHLSKLQTPFRR 679
Query: 476 ISYNDAISLYGSDKPDLRY 494
I+Y +A+ YG DKPD R+
Sbjct: 680 ITYEEALEKYGCDKPDTRF 698
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195387357|ref|XP_002052362.1| GJ17510 [Drosophila virilis] gi|194148819|gb|EDW64517.1| GJ17510 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A + VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +MR R
Sbjct: 501 EIEADKVDVLNAAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMRMR 560
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 561 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 620
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L P
Sbjct: 621 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKHLPKLQTP--- 677
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 678 FRRITYEEALEKYGTDKPDTRF 699
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195115020|ref|XP_002002065.1| GI14195 [Drosophila mojavensis] gi|193912640|gb|EDW11507.1| GI14195 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/202 (63%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A I VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +MR R
Sbjct: 568 EIEADKIDVLNAAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMRMR 627
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 628 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 687
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L P
Sbjct: 688 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKHLPKLQTP--- 744
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 745 FRRITYEEALEKYGTDKPDTRF 766
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195579672|ref|XP_002079685.1| GD24088 [Drosophila simulans] gi|194191694|gb|EDX05270.1| GD24088 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 552 EVEADKVVVLNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMKMR 611
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 612 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 671
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L P
Sbjct: 672 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKDFPRLQTP--- 728
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 729 FRRITYEEAMEKYGNDKPDTRF 750
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194884465|ref|XP_001976268.1| GG22777 [Drosophila erecta] gi|190659455|gb|EDV56668.1| GG22777 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 553 EVEADKVVVLNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMKMR 612
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 613 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 672
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L P
Sbjct: 673 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKDFPRLQTP--- 729
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 730 FRRITYEEAMEKYGNDKPDTRF 751
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24584738|ref|NP_724018.1| CG31739, isoform A [Drosophila melanogaster] gi|442628131|ref|NP_001260519.1| CG31739, isoform B [Drosophila melanogaster] gi|442628133|ref|NP_001260520.1| CG31739, isoform C [Drosophila melanogaster] gi|21430724|gb|AAM51040.1| SD02215p [Drosophila melanogaster] gi|22946677|gb|AAF53577.3| CG31739, isoform A [Drosophila melanogaster] gi|440213869|gb|AGB93054.1| CG31739, isoform B [Drosophila melanogaster] gi|440213870|gb|AGB93055.1| CG31739, isoform C [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 494 EVEADKVVVLNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMKMR 553
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 554 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 613
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L P
Sbjct: 614 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKDFPRLQTP--- 670
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 671 FRRITYEEAMEKYGNDKPDTRF 692
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195483970|ref|XP_002090507.1| GE12772 [Drosophila yakuba] gi|194176608|gb|EDW90219.1| GE12772 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/202 (62%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 549 EVEADKVVVLNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMKMR 608
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 609 EYLVNYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 668
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLD+ELSFT+RDD+M+LIEE L Y L P
Sbjct: 669 FQVARCYRDEATRPDRQPEFTQLDVELSFTSRDDIMQLIEETLRYSWPKDFPRLQTP--- 725
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 726 FRRITYEEAMEKYGNDKPDTRF 747
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195052814|ref|XP_001993375.1| GH13102 [Drosophila grimshawi] gi|193900434|gb|EDV99300.1| GH13102 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/202 (62%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A + +LN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +MR R
Sbjct: 505 EIEADKVDILNAAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMRMR 564
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 565 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 624
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y L P
Sbjct: 625 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKHLPKLQTP--- 681
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG+DKPD R+
Sbjct: 682 FRRITYEEAMEKYGNDKPDTRF 703
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194760025|ref|XP_001962242.1| GF15370 [Drosophila ananassae] gi|190615939|gb|EDV31463.1| GF15370 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/202 (62%), Positives = 153/202 (75%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A +T+LN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 560 EVDADKVTILNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSTVIMKMR 619
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 620 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 679
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE+TRPDRQPEFTQLD+ELSFT RDD+M+LIEE+L Y L P
Sbjct: 680 FQVARCYRDEATRPDRQPEFTQLDVELSFTNRDDIMQLIEEVLRYSWPKDLPRLQTP--- 736
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F RI+Y +A+ YG DKPD R+
Sbjct: 737 FRRITYEEAMEKYGVDKPDTRF 758
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 883 | ||||||
| FB|FBgn0051739 | 1082 | CG31739 [Drosophila melanogast | 0.220 | 0.180 | 0.643 | 6.8e-128 | |
| UNIPROTKB|A6QPU5 | 651 | DARS2 "Aspartate--tRNA ligase, | 0.221 | 0.301 | 0.550 | 6.1e-122 | |
| UNIPROTKB|F1MEQ5 | 651 | DARS2 "Uncharacterized protein | 0.221 | 0.301 | 0.550 | 7.8e-122 | |
| ZFIN|ZDB-GENE-070912-443 | 660 | dars2 "aspartyl-tRNA synthetas | 0.221 | 0.296 | 0.550 | 8.5e-122 | |
| RGD|1308286 | 652 | Dars2 "aspartyl-tRNA synthetas | 0.225 | 0.305 | 0.553 | 1.1e-121 | |
| UNIPROTKB|Q6PI48 | 645 | DARS2 "Aspartate--tRNA ligase, | 0.225 | 0.308 | 0.549 | 1e-120 | |
| UNIPROTKB|F1PD07 | 652 | DARS2 "Uncharacterized protein | 0.225 | 0.305 | 0.544 | 6.4e-120 | |
| MGI|MGI:2442510 | 653 | Dars2 "aspartyl-tRNA synthetas | 0.225 | 0.304 | 0.553 | 3.7e-119 | |
| UNIPROTKB|F1S742 | 656 | DARS2 "Uncharacterized protein | 0.185 | 0.25 | 0.612 | 1.3e-115 | |
| DICTYBASE|DDB_G0270152 | 692 | maspS "putative mitochondrial | 0.223 | 0.284 | 0.504 | 1.5e-101 |
| FB|FBgn0051739 CG31739 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 6.8e-128, Sum P(3) = 6.8e-128
Identities = 128/199 (64%), Positives = 155/199 (77%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VLN A N+PF I+ +N+A E LRL HRYLD RF +MQHNLR RS +M+ R
Sbjct: 494 EVEADKVVVLNPAKKNLPFEIRKFNRAGERLRLTHRYLDLRFNDMQHNLRLRSAVIMKMR 553
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L + FVEVETPTLF+RTPGGA+EFVVPT + FYSLVQSPQQ KQ+LM G +DRY
Sbjct: 554 EYLINYLGFVEVETPTLFRRTPGGAQEFVVPTRKAGHFYSLVQSPQQFKQMLMSGGIDRY 613
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL--NIPT-RT-FSR 475
FQ+ARCYRDE+TRPDRQPEFTQLDIELSFT+RDD+M+LIEE L Y + P +T F R
Sbjct: 614 FQVARCYRDEATRPDRQPEFTQLDIELSFTSRDDIMQLIEETLRYSWPKDFPRLQTPFRR 673
Query: 476 ISYNDAISLYGSDKPDLRY 494
I+Y +A+ YG+DKPD R+
Sbjct: 674 ITYEEAMEKYGNDKPDTRF 692
|
|
| UNIPROTKB|A6QPU5 DARS2 "Aspartate--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 6.1e-122, Sum P(3) = 6.1e-122
Identities = 114/207 (55%), Positives = 146/207 (70%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 137 EIKVKTAKLLNSCK-KLPFEIKDFMKKTETLRLQYRYLDLRSVQMQYNLRLRSQMVMKMR 195
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV+VETPTLFKRTPGGA+EFV+P+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 196 EYLCNLHGFVDVETPTLFKRTPGGAKEFVIPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 255
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + V LIE LL Y L +P
Sbjct: 256 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGVQSLIEGLLQYSWPSDKDPLVVP--- 312
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F + + +A++ YG+DKPD R+ KI+
Sbjct: 313 FPSMPFAEALASYGTDKPDTRFGMKIV 339
|
|
| UNIPROTKB|F1MEQ5 DARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 7.8e-122, Sum P(3) = 7.8e-122
Identities = 114/207 (55%), Positives = 146/207 (70%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 137 EIKVKTAKLLNSCK-KLPFEIKDFMKKTETLRLQYRYLDLRSVQMQYNLRLRSQMVMKMR 195
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV+VETPTLFKRTPGGA+EFV+P+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 196 EYLCNLHGFVDVETPTLFKRTPGGAKEFVIPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 255
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + V LIE LL Y L +P
Sbjct: 256 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGVQSLIEGLLQYSWPSDKDPLVVP--- 312
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F + + +A++ YG+DKPD R+ KI+
Sbjct: 313 FPSMPFAEALASYGTDKPDTRFGMKIV 339
|
|
| ZFIN|ZDB-GENE-070912-443 dars2 "aspartyl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 8.5e-122, Sum P(3) = 8.5e-122
Identities = 114/207 (55%), Positives = 148/207 (71%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A +I VLN + +PF IK + K E LR+++RYLD R MQ+NLR RS+ +M+ R
Sbjct: 161 EVCAESIEVLNTSR-KLPFEIKEFVKKSEALRMQYRYLDLRSATMQNNLRLRSQMVMKMR 219
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV+VETPTLFKRTPGGA+EFVVP+ +P KFYSL QSPQQ KQLLMV +DRY
Sbjct: 220 EYLCNLHGFVDVETPTLFKRTPGGAKEFVVPSGDPGKFYSLPQSPQQFKQLLMVAGIDRY 279
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE ++PDRQPEFTQ+DIE+SF + VM LIE L+ + +N+P
Sbjct: 280 FQLARCYRDEGSKPDRQPEFTQVDIEMSFVDQAGVMSLIEGLVQFSWPEDKGQINVP--- 336
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F ++Y +A+ YG DKPD R+ K++
Sbjct: 337 FPTLTYEEAMRDYGVDKPDTRFGMKLV 363
|
|
| RGD|1308286 Dars2 "aspartyl-tRNA synthetase 2 (mitochondrial)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 1.1e-121, Sum P(3) = 1.1e-121
Identities = 113/204 (55%), Positives = 148/204 (72%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A +LN A +PF IK++ K E LRL++RYLD R +MQHNLR RS+ +M+ R
Sbjct: 139 EIKAKTAELLN-ACKKLPFEIKDFVKKTEALRLQYRYLDLRSSQMQHNLRLRSQMVMKMR 197
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L T FV++ETPTLFKRTPGGA+EF+VP+ EP +FYSL QSPQQ KQLLMVG +DRY
Sbjct: 198 EYLCTLHGFVDIETPTLFKRTPGGAKEFLVPSREPGRFYSLPQSPQQFKQLLMVGGLDRY 257
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL---NIP-TRTFSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + L+E LL Y P F
Sbjct: 258 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQHLVEGLLHYSWPEDKDPLVAPFPS 317
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 318 MTFAEALATYGTDKPDTRFGMKIV 341
|
|
| UNIPROTKB|Q6PI48 DARS2 "Aspartate--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 1.0e-120, Sum P(3) = 1.0e-120
Identities = 112/204 (54%), Positives = 145/204 (71%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IKN+ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 140 EIKVKTAELLN-ACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 198
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 199 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 258
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL---NIPTRT-FSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + LIE LL Y P F
Sbjct: 259 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPT 318
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ + ++ YG+DKPD R+ KI+
Sbjct: 319 MTFAEVLATYGTDKPDTRFGMKII 342
|
|
| UNIPROTKB|F1PD07 DARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 6.4e-120, Sum P(3) = 6.4e-120
Identities = 111/204 (54%), Positives = 144/204 (70%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 138 EIKVKTAELLNSCK-KLPFEIKDFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 196
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV+VETPTLFKRTPGGA+EFV+P+ EP KFY L QSPQQ KQLLMVG +DRY
Sbjct: 197 EYLCNLHGFVDVETPTLFKRTPGGAKEFVIPSREPGKFYCLPQSPQQFKQLLMVGGLDRY 256
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL---NIPTRT-FSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + LIE LL Y P F
Sbjct: 257 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPSDKDPVVVPFPS 316
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 317 MTFAEALASYGTDKPDTRFGMKIV 340
|
|
| MGI|MGI:2442510 Dars2 "aspartyl-tRNA synthetase 2 (mitochondrial)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 3.7e-119, Sum P(3) = 3.7e-119
Identities = 113/204 (55%), Positives = 148/204 (72%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 139 EIKVKTAELLN-ACKKLPFEIKDFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 197
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 198 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 257
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL---NIPTRT-FSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + RL+E LL Y P T F
Sbjct: 258 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVEQTGIQRLVEGLLQYSWPGDKDPLVTPFPS 317
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 318 MTFAEALATYGTDKPDTRFGMKIV 341
|
|
| UNIPROTKB|F1S742 DARS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 1.3e-115, Sum P(3) = 1.3e-115
Identities = 101/165 (61%), Positives = 124/165 (75%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 140 EIKVKTAKLLNSCK-KLPFEIKDFVKKTETLRLQYRYLDLRGAQMQYNLRLRSQMVMKMR 198
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EFVVP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 199 EYLCNLHGFVDIETPTLFKRTPGGAKEFVVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 258
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464
FQIARCYRDE +RPDRQPEFTQ+DIE+SF + + LIE LL Y
Sbjct: 259 FQIARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQY 303
|
|
| DICTYBASE|DDB_G0270152 maspS "putative mitochondrial aspartyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 1.5e-101, Sum P(3) = 1.5e-101
Identities = 104/206 (50%), Positives = 138/206 (66%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKA-KEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRT 358
E+ + +LN V++PF +++ + A E+LRLK+RY+D R ++Q N+R RSK M
Sbjct: 183 EISVDQLQLLNNC-VDLPFTVEHDSTAVSEELRLKYRYVDLRRDKVQSNIRLRSKVAMAA 241
Query: 359 REFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
R +L ++ F+EVETPTLF+ TP GARE++VPT +FYSL QSPQQ KQLLMVG +DR
Sbjct: 242 RNYLI-NQQFIEVETPTLFRPTPEGAREYLVPTRHQGQFYSLPQSPQQYKQLLMVGGIDR 300
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-----LNIPTRTF 473
YFQ+ARCYRDE R DRQPEFTQ+D+ELSF + R+IE L+ NI F
Sbjct: 301 YFQLARCYRDEDLRSDRQPEFTQIDMELSFVNTQMIYRIIEGLVKTLWKEAGFNIDYE-F 359
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
+Y +S YG DKPD RYD K++
Sbjct: 360 PFYTYEQVLSTYGIDKPDTRYDMKLV 385
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.12 | 0.824 |
| 3rd Layer | 2.1.1 | 0.691 |
| 4th Layer | 2.1.1.8 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 883 | |||
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 3e-96 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 3e-89 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 3e-71 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 1e-70 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 2e-69 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 7e-69 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 3e-67 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 6e-67 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 4e-63 | |
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 2e-60 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 1e-56 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 2e-56 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 6e-42 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 9e-41 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 1e-34 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 2e-33 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 3e-28 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 3e-27 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 7e-27 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 4e-25 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 6e-19 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 7e-19 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-17 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 2e-17 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 7e-17 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 7e-16 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 2e-15 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 6e-15 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 6e-15 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 4e-14 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 5e-14 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 1e-13 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 1e-13 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 2e-13 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 5e-13 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 5e-13 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 9e-13 | |
| TIGR00462 | 290 | TIGR00462, genX, EF-P lysine aminoacylase GenX | 5e-12 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 6e-12 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 1e-11 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 3e-11 | |
| COG2269 | 322 | COG2269, COG2269, Truncated, possibly inactive, ly | 4e-11 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 4e-11 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 3e-10 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 4e-10 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 7e-10 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 8e-10 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 9e-10 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 2e-09 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-09 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 4e-09 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-09 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 9e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-08 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 5e-08 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 6e-08 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-08 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 8e-08 | |
| PRK09350 | 306 | PRK09350, PRK09350, poxB regulator PoxA; Provision | 9e-08 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 2e-07 | |
| TIGR00462 | 290 | TIGR00462, genX, EF-P lysine aminoacylase GenX | 1e-06 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 2e-06 | |
| pfam00587 | 171 | pfam00587, tRNA-synt_2b, tRNA synthetase class II | 2e-06 | |
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 2e-06 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 1e-05 | |
| TIGR04345 | 242 | TIGR04345, ovoA_Cterm, putative 4-mercaptohistidin | 1e-05 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 1e-05 | |
| COG2269 | 322 | COG2269, COG2269, Truncated, possibly inactive, ly | 2e-05 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 4e-05 | |
| PRK12335 | 287 | PRK12335, PRK12335, tellurite resistance protein T | 8e-05 | |
| PRK09350 | 306 | PRK09350, PRK09350, poxB regulator PoxA; Provision | 1e-04 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-04 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 2e-04 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 2e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 2e-04 | |
| pfam02938 | 94 | pfam02938, GAD, GAD domain | 4e-04 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 0.001 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 0.003 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 0.004 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 0.004 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.004 | |
| COG0357 | 215 | COG0357, GidB, Predicted S-adenosylmethionine-depe | 0.004 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = 3e-96
Identities = 109/206 (52%), Positives = 141/206 (68%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+AS + VLNK+ +PF I + E+LRLK+RYLD R PEMQ NL+ RSK R
Sbjct: 94 EVLASELEVLNKSKT-LPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIR 152
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLVQSPQQLKQLLMVGSVD 417
FL + F+E+ETP L K TP GAR+++VP H P KFY+L QSPQ KQLLMV D
Sbjct: 153 NFLDDN-GFLEIETPILTKSTPEGARDYLVPSRVH-PGKFYALPQSPQLFKQLLMVAGFD 210
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIP-TRT 472
RY+QIARC+RDE R DRQPEFTQ+DIE+SF T++DVM L+E L+ + L +
Sbjct: 211 RYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTP 270
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKI 498
F R++Y +A+ YGSDKPDLR+ ++
Sbjct: 271 FPRMTYAEAMRRYGSDKPDLRFGLEL 296
|
Length = 588 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 3e-89
Identities = 110/206 (53%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+A I VLN + +PF I++ A E++RLK+RYLD R PEMQ NL+ RSK R
Sbjct: 94 EVLAEEIEVLNASK-TLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIR 152
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPT--HEPNKFYSLVQSPQQLKQLLMVGSVD 417
FL F+E+ETP L K TP GAR+F+VP+ H P KFY+L QSPQ KQLLMV D
Sbjct: 153 NFLDDQ-GFLEIETPILTKSTPEGARDFLVPSRVH-PGKFYALPQSPQLFKQLLMVAGFD 210
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNI-PTRT 472
RY+QIARC+RDE R DRQPEFTQ+D+E+SF +DVM LIE+LL Y I
Sbjct: 211 RYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIELKTP 270
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKI 498
F R++Y +A+ YGSDKPDLR+ ++
Sbjct: 271 FPRMTYAEAMRRYGSDKPDLRFPLEL 296
|
Length = 585 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 3e-71
Identities = 102/204 (50%), Positives = 142/204 (69%), Gaps = 13/204 (6%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E++A +IT+LNK+ P I+ + A+E++RLK+RYLD R PEMQ L+ R K R
Sbjct: 92 EILAESITLLNKSKT-PPLIIEKTD-AEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVR 149
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPT--HEPNKFYSLVQSPQQLKQLLMVGSVD 417
FL F+E+ETP L K TP GAR+++VP+ H+ +FY+L QSPQ KQLLMV VD
Sbjct: 150 NFLDQQ-GFLEIETPMLTKSTPEGARDYLVPSRVHKG-EFYALPQSPQLFKQLLMVSGVD 207
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPTR 471
RY+QIARC+RDE R DRQPEFTQ+D+E+SF T++DVM LIE+L+ + +++ +
Sbjct: 208 RYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGIDLK-K 266
Query: 472 TFSRISYNDAISLYGSDKPDLRYD 495
F ++Y +A+ YGSDKPDLR+
Sbjct: 267 PFPVMTYAEAMERYGSDKPDLRFP 290
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 1e-70
Identities = 103/269 (38%), Positives = 147/269 (54%), Gaps = 14/269 (5%)
Query: 620 RILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679
+ +++P + K+I E AK + ++ +KV++ + K L + +EE
Sbjct: 322 KAIVVPGGASLSRKQIDELTEFAKI-YGAKGLAYIKVEED-GLKGPIAKFLSEEILEELI 379
Query: 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFP 739
+ E+GD+I K++ V LG +R + K L + F WVVDFP
Sbjct: 380 ERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKE-------LGLIDKDQFKFLWVVDFP 432
Query: 740 LFLPSD-SGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSS 798
LF + G +AHHPFT P PED LL ++P VR YDLVLNG E+GGGSIRIH
Sbjct: 433 LFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDP 492
Query: 799 ELQESILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIA 854
E+QE + L I + +++AFKYG PPHGGIA G+DRL+ +L G +SIRDVIA
Sbjct: 493 EIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIA 552
Query: 855 FPKGFGGKDHLSGAPCDIPEAERNYYNLK 883
FPK D L+ AP ++ E + ++K
Sbjct: 553 FPKTQQAADLLTNAPSEVDEKQLKELSIK 581
|
Length = 585 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 2e-69
Identities = 80/145 (55%), Positives = 99/145 (68%), Gaps = 7/145 (4%)
Query: 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPT-HEPNKFYSLVQSPQQ 406
LR RS+ + R FL + FVE+ETP L K TP GAR+F+VP+ P KFY+L QSPQ
Sbjct: 1 LRLRSRVIKAIRNFL-DEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQL 59
Query: 407 LKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY-- 464
KQLLMV DRYFQIARC+RDE R DRQPEFTQ+DIE+SF ++D+M LIE LL Y
Sbjct: 60 FKQLLMVSGFDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVF 119
Query: 465 --CLNIP-TRTFSRISYNDAISLYG 486
L + T F R++Y +A+ YG
Sbjct: 120 KEVLGVELTTPFPRMTYAEAMERYG 144
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 7e-69
Identities = 97/258 (37%), Positives = 133/258 (51%), Gaps = 27/258 (10%)
Query: 630 STNKKITEYKNLAKK------AFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKEN 683
+ K+I E AK A+ +KV + + K L + + +
Sbjct: 333 LSRKQIDELTEFAKIYGAKGLAY-------IKVNED-GLKGPIAKFLSEEELAALLERTG 384
Query: 684 LEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLP 743
++GDLI K + V LG +R +K+ L L + F+ WVVDFP+F
Sbjct: 385 AKDGDLIFFGADKAKVVNDALGALR-----LKLGKELGLI--DEDKFAFLWVVDFPMFEY 437
Query: 744 S-DSGTLESAHHPFTQPHPEDEH-LLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQ 801
+ G +AHHPFT P ED L +++P + R YDLVLNG E+GGGSIRIH E+Q
Sbjct: 438 DEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGYELGGGSIRIHRPEIQ 497
Query: 802 ESILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
E + L I + ++ A KYG PPHGGIA G+DRL+ +L G SIRDVIAFPK
Sbjct: 498 EKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPK 557
Query: 858 GFGGKDHLSGAPCDIPEA 875
+D L+GAP + E
Sbjct: 558 TQSAQDLLTGAPSPVDEK 575
|
Length = 588 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 3e-67
Identities = 97/190 (51%), Positives = 117/190 (61%), Gaps = 16/190 (8%)
Query: 328 EDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-ARE 386
E+ RLK+RYLD R P+MQ NL+ RSK + REFL R F+EVETP L K TP G AR+
Sbjct: 2 EETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDE-RGFLEVETPILTKSTPEGGARD 60
Query: 387 FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQP-EFTQLDIE 445
F+VP+ K L QSPQ KQLLMV DR FQIA C+RDE R DR P EFTQLD+E
Sbjct: 61 FLVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDLE 120
Query: 446 LSFTTRDDVMRLIEELLCYC-------------LNIPTRTFSRISYNDAISLYGSDKPDL 492
+SF +DVM L E+L+ Y L I F RI+Y +AI YGSDKPDL
Sbjct: 121 MSFVDYEDVMDLTEDLIKYVFKKVLGKREELELLGIELPEFPRITYAEAIERYGSDKPDL 180
Query: 493 RYDCKIMIAI 502
R+ ++
Sbjct: 181 RFGLELKDVT 190
|
Length = 345 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 6e-67
Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 12/207 (5%)
Query: 300 EVIASNITVLNKADVNIPFHI----KNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFL 355
EV+A ++ +LN ++PF + + + KE++RL++R LD R P+M NLR R + +
Sbjct: 151 EVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVV 210
Query: 356 MRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVG 414
R +L FVE+ETP L + TP GAR+++VP+ +P FY+L QSPQ KQ+LMV
Sbjct: 211 KLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVS 270
Query: 415 SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNI 468
DRY+QIARC+RDE R DRQPEFTQLD+EL+FT +D+++L E+L+ + +
Sbjct: 271 GFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQL 330
Query: 469 PTRTFSRISYNDAISLYGSDKPDLRYD 495
P F R++Y +A+S YGSDKPDLRY
Sbjct: 331 P-NPFPRLTYAEAMSKYGSDKPDLRYG 356
|
Length = 652 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 213 bits (546), Expect = 4e-63
Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 13/179 (7%)
Query: 692 VSWGKQEDVLSLL-GMIRS---ESHKIKVKNTLP-LEFDNPKS---FSIFWVVDFPLFLP 743
+S+ QED++SL+ G+++ E +++ P + + F W+VDFPLF
Sbjct: 99 MSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERYGFKFLWIVDFPLFEW 158
Query: 744 SD-SGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQE 802
+ G L SAHHPFT P ED LL +P + R YDLVLNG E+GGGSIRIH ++QE
Sbjct: 159 DEEEGRLVSAHHPFTAPKEEDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQE 218
Query: 803 SILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
+ L + + +++AFKYG PPHGGIALG+DRL+ +L G++SIRDVIAFPK
Sbjct: 219 KVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPK 277
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 2e-60
Identities = 91/209 (43%), Positives = 125/209 (59%), Gaps = 8/209 (3%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV---LDVG 142
YS+ Y+ V T+DGML GY +SD+D+ S FL L ++ PGK R LD G
Sbjct: 6 YSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRL--LRERLPGKRRHLVALDCG 63
Query: 143 AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 202
AGIGR++K LL F K+DL+E F+ +AKE + + K+ + VG+QDF PE+
Sbjct: 64 AGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKKKVGNFFCVGLQDFTPEEG-- 121
Query: 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRS 262
+YD+IWIQW + + DED++ FL CK L NG I++K+NVA +D EDSSV RS
Sbjct: 122 RYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQ-NGFVFDKEDSSVTRS 180
Query: 263 LPQFCLLFSKANLKCVKSEKGEFSPMDLW 291
F LF KA LK V E+ + P +L+
Sbjct: 181 EAYFKKLFKKAGLKLVAEERQKGLPQELY 209
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-56
Identities = 97/216 (44%), Positives = 132/216 (61%), Gaps = 18/216 (8%)
Query: 300 EVIASNITVLNKADVNIPFHIKN-----------YNKAKEDLRLKHRYLDFRFPEMQHNL 348
EV +++L ++ +PF I + + EDLRL++RYLD R P MQ +L
Sbjct: 98 EVFVRELSILAASEA-LPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHL 156
Query: 349 RFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQL 407
R + + R+FL + R F+E+ETP L K TP GAR+++VP+ P +FY+L QSPQ
Sbjct: 157 AKRHRIIKCARDFLDS-RGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLF 215
Query: 408 KQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLN 467
KQLLM+ +RYFQ+ARC+RDE RP+RQPEFTQLDIE SF + + LIEEL
Sbjct: 216 KQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEELTARMFA 275
Query: 468 IP----TRTFSRISYNDAISLYGSDKPDLRYDCKIM 499
I R F R+ Y +A+ GSD+PDLR+D K
Sbjct: 276 IGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFA 311
|
Length = 706 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 2e-56
Identities = 98/258 (37%), Positives = 141/258 (54%), Gaps = 15/258 (5%)
Query: 631 TNKKITEYKNLAKKAFNDVK-MSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDL 689
+ K I E + AK+ K ++ +KV + + + K L + + + + + GD+
Sbjct: 331 SRKSIKELRKFAKE--YGAKGLAYLKVNED-GINSPIKKFLDEKKGKILLERTDAQNGDI 387
Query: 690 IVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTL 749
++ G ++ VL LG +R +K+ L L +P FS WVVDFP+F G L
Sbjct: 388 LLFGAGSKKIVLDALGALR-----LKLGKDLGLV--DPDLFSFLWVVDFPMFEKDKEGRL 440
Query: 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN 809
+AHHPFT P ED L + P E YDLVLNG E+GGGSIRIH E+Q+ + L
Sbjct: 441 CAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILG 500
Query: 810 IETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHL 865
I+ + +++AFKYG PPH G ALG+DRLM +L GT +IRDVIAFPK +
Sbjct: 501 IDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAAACLM 560
Query: 866 SGAPCDIPEAERNYYNLK 883
+ AP I E + ++K
Sbjct: 561 TEAPSFIDEKQLEELSIK 578
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 6e-42
Identities = 69/199 (34%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 664 NKLTKILPDL-NVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPL 722
+ PDL E ++ + +G V + V LG +RSE + + +
Sbjct: 171 ERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEENLGD---- 226
Query: 723 EFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLV 782
+ +V DFPLF HPF P ED +DLV
Sbjct: 227 ----KDKDNPVFVTDFPLFE-----------HPFYMPKDEDP--------PGLAERFDLV 263
Query: 783 LNGNEIGGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDR 838
LNG EIGGGSIRIH E Q L ++ + A KYG PPHGGI LG+DR
Sbjct: 264 LNGGEIGGGSIRIHDPEEQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGLDR 323
Query: 839 LMSILCGTQSIRDVIAFPK 857
L+ +L G +SIR+VIAFPK
Sbjct: 324 LVMLLTGLESIREVIAFPK 342
|
Length = 345 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 9e-41
Identities = 88/230 (38%), Positives = 123/230 (53%), Gaps = 18/230 (7%)
Query: 654 VKVQD--SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSES 711
+KV D LE L + L E+ GDLI+ + G V L +R
Sbjct: 421 LKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQ-- 478
Query: 712 HKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSN 770
+ TL L +P SI WV DFP+F D LE+ HHPFT P+PED LSS
Sbjct: 479 ---FIAKTLDL--IDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSS- 532
Query: 771 PLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKYGC 826
R L YD+V NG EIGGGS+RI+ ++Q+ +L + + + ++++A G
Sbjct: 533 ---ARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGA 589
Query: 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
PPHGGIA G+DRL+ +L G +SIRDVIAFPK + L+ AP ++ + +
Sbjct: 590 PPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQCALTRAPSEVDDKQ 639
|
Length = 652 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 1e-34
Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 32/225 (14%)
Query: 672 DLNVEEFRNKENL---------EEGD-LIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLP 721
D N+ +F + + E+GD +I+++ VLS LG +R + + + L
Sbjct: 380 DSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLR-----LHLADRLG 434
Query: 722 LEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGL---- 777
L F W+ DFPLF +D G + S+HHPFT P ED +P ++ L
Sbjct: 435 L--IPEGVFHPLWITDFPLFEATDDGGVTSSHHPFTAPDRED-----FDPGDIEELLDLR 487
Query: 778 --HYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGG 831
YDLV+NG E+GGGSIRI+ ++Q I L + ++ ++AF + PPHGG
Sbjct: 488 SRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGG 547
Query: 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
IALG+DR++S++ T SIR+VIAFPK L+GAP ++ + +
Sbjct: 548 IALGLDRVVSMILQTPSIREVIAFPKNRSAACPLTGAPSEVAQEQ 592
|
Length = 706 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVPTHEPNKFYSLVQSPQQ 406
+ RSK + R+F+ F+EVETP L K T G GAR F+V + Y L SPQ
Sbjct: 1 FKVRSKIIKAIRDFMDDR-GFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQL 59
Query: 407 LKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL 466
K+ LMVG +DR F+I R +R+E R QPEFT +D+E++F +DV+ L E L+ +
Sbjct: 60 FKKRLMVGGLDRVFEINRNFRNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLA 119
Query: 467 N---------------IPTRTFSRISYNDAISLYG 486
F R++Y +A+ YG
Sbjct: 120 REVLGVTAVTYGFELEDFGLPFPRLTYREALERYG 154
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 69/206 (33%), Positives = 99/206 (48%), Gaps = 24/206 (11%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EVI I VLNKA+ +P I A+ D RL +R+LD R P ++ + RS+ L R
Sbjct: 88 EVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFR 147
Query: 360 EFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
EFL + F E+ TP + T GGA F + E + L QSPQ KQ+++ +R
Sbjct: 148 EFLYEN-GFTEIFTPKIVASGTEGGAELFPIDYFEKEAY--LAQSPQLYKQMMVGAGFER 204
Query: 419 YFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRD-DVMRLIEELLCYCLN--------- 467
F+I +R E R E+T +D+E+ F DVM L+E LL Y
Sbjct: 205 VFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKE 264
Query: 468 ---------IPTRTFSRISYNDAISL 484
+P RI+Y++AI +
Sbjct: 265 LELLGIELPVPETPIPRITYDEAIEI 290
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 72/205 (35%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+I + I V+N+A +P A+ D RL +R+LD R P +Q R RS L R
Sbjct: 85 EIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVR 144
Query: 360 EFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
EFLA F+EV TP L T GG F + E F L QSPQ KQ LM +R
Sbjct: 145 EFLAE-EGFIEVHTPKLVASATEGGTELFPITYFEREAF--LGQSPQLYKQQLMAAGFER 201
Query: 419 YFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEEL---------------- 461
++I +R E R E T +DIE++F DVM ++EEL
Sbjct: 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQL 261
Query: 462 --LCYCLNIPTRTFSRISYNDAISL 484
L + L P F R++Y++AI +
Sbjct: 262 ETLEFKLEKPEGKFVRLTYDEAIEM 286
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 7e-27
Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ I VL +AD P K ++ + L +R+LD R P++Q + RS L R
Sbjct: 88 ELQVEKIEVLGEADPPYPIDKKE--HSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIR 145
Query: 360 EFLATHRDFVEVETPTLFKRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
EF F EV TP + G E F V + + L QSPQ K+ L +++R
Sbjct: 146 EFFYE-NGFTEVHTPIITASATEGGGELFKVDYFDKEAY--LTQSPQLYKEALA-AALER 201
Query: 419 YFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLN---------- 467
F I +R E + R EF LD E++F +DVM L EEL+ Y
Sbjct: 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADEL 261
Query: 468 ------------IPTRTFSRISYNDAISLYGS 487
+ F RI+Y +AI +
Sbjct: 262 EFLGRDNSELKRPESAPFPRITYKEAIEILEE 293
|
Length = 435 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 734 WVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSI 793
++ D+P H P PH + +DL +NG E+G GS
Sbjct: 158 FLTDYPAE----------MHSPLASPHDVNP---------EIADAFDLFINGVEVGNGSS 198
Query: 794 RIHSSELQESILHFLNI----ETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSI 849
R+H ++Q + I + ++A +YG PPHGG+ +GIDRL+ ++ + +I
Sbjct: 199 RLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTI 258
Query: 850 RDVIAFPK 857
R+VIAFPK
Sbjct: 259 REVIAFPK 266
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 6e-19
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TPGG 383
A + L +R+LD R P++Q R RS+ L REFL + F EV TP + T GG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLREN-GFTEVHTPKITSTDTEGG 59
Query: 384 AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQL 442
A F V + L QSPQ K+ +++ +++R ++I +R E + R EF L
Sbjct: 60 AELFKVSYFGKPAY--LAQSPQLYKE-MLIAALERVYEIGPVFRAEKSNTRRHLSEFWML 116
Query: 443 DIELSF-TTRDDVMRLIEELLCY--------C-------------LNIPTRTFSRISYND 480
+ E++F ++VM LIEEL+ Y C L P F RI+Y++
Sbjct: 117 EAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLNRELLKPLEPFPRITYDE 176
Query: 481 AISL 484
AI L
Sbjct: 177 AIEL 180
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 7e-19
Identities = 54/211 (25%), Positives = 78/211 (36%), Gaps = 50/211 (23%)
Query: 657 QDSLEWTNKLTKILPDLNVEEFRN------KENLEEGDLIVVSWG--KQEDVLSLLGMIR 708
D LE+ + L F E LEE V WG + LG
Sbjct: 258 ADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKGFEKVEWGDDLGTEHERYLGE-- 315
Query: 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLL 767
E+ P +V ++P PF +P P+
Sbjct: 316 --------------EYFKP----PVFVTNYP-----------KEIKPFYMRPDPD----- 341
Query: 768 SSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGC 826
NP V +DL+ G EI GGS R H +L + ++ S + + KYG
Sbjct: 342 --NPGTVAS--FDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGM 397
Query: 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
PPH G LG++RL+ + G +IR+ I FP+
Sbjct: 398 PPHAGFGLGLERLVMYILGLDNIREAIPFPR 428
|
Length = 435 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-17
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHS-SELQESILHFLNIE 811
PF +P ++ + S +DL++ G EI GGS RIH EL+E I ++
Sbjct: 224 PFYMKPDDDNPETVES---------FDLLMPGVGEIVGGSQRIHDYDELEERIKE-HGLD 273
Query: 812 TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
S + + KYG PPHGG LG++RL+ L G +IR+ I FP+
Sbjct: 274 PESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPR 319
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 48/226 (21%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKE-DLRLKHRYL 337
K++KGE S + ++ VL K + +P Y+ + + R + RYL
Sbjct: 175 KTKKGELS--------------IFPTSFEVLTKCLLMLP---DKYHGLTDQETRYRQRYL 217
Query: 338 DFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA--REFVVPTHEP 394
D PE++ R R+K + R FL R F+EVETP L GGA R FV TH
Sbjct: 218 DLIANPEVRDIFRTRAKIISYIRRFLDD-RGFLEVETPML-NMIAGGAAARPFV--THHN 273
Query: 395 N---KFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIELSFT 449
+ Y + + LK+L+ VG +R ++I R +R+E STR PEFT + ++
Sbjct: 274 DLNMDLYLRIATELHLKRLV-VGGFERVYEIGRQFRNEGISTR--HNPEFTTCEFYQAYA 330
Query: 450 TRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYND 480
+D+M L EE++ I T F RIS
Sbjct: 331 DYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMIS 376
|
Length = 553 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 7e-17
Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHS-SELQESILHF-LNIE 811
PF T P +D + S +DL+ G EI G RIH L ESI LN E
Sbjct: 336 PFYTMPDEDDPEISKS---------FDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPE 386
Query: 812 TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
S + ++AFKYG PPHGG LG++RL L G ++IR+ + FP
Sbjct: 387 --SFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFP 429
|
Length = 437 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 7e-16
Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 44/203 (21%)
Query: 347 NLRFRSKFLMRT------REFLATHRDFVEVETPTLFKRTPGGA--REFVVPTHEPN--- 395
N R F++R+ R+FL R F+EVETP L + GGA R F+ TH N
Sbjct: 1 NEEVRQTFIVRSKIISYIRKFLDD-RGFLEVETPML-QPIAGGAAARPFI--THH-NALD 55
Query: 396 -KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDD 453
Y L +P+ LK+L+ VG +R ++I R +R+E PEFT ++ ++ +D
Sbjct: 56 MDLY-LRIAPELYLKRLI-VGGFERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYND 113
Query: 454 VMRLIEELLCYCLN-------IP--------TRTFSRISYNDAISLY-GSDKP------- 490
+M L E+L + I T F R++ DA+ G D P
Sbjct: 114 MMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQP 173
Query: 491 -DLRYDCKIMIAIKEQPPWPSGY 512
+L +I K + P G
Sbjct: 174 EELAKLLAKLIKEKIEKPRTLGK 196
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 79.7 bits (198), Expect = 2e-15
Identities = 73/237 (30%), Positives = 110/237 (46%), Gaps = 58/237 (24%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++ GE S V A+ +T+L K+ +P FH + + + R + R
Sbjct: 118 KTKTGELS--------------VKATELTLLTKSLRPLPDKFHGLTD-----VETRYRQR 158
Query: 336 YLDF--RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPT 391
Y+D PE + R RSK + R FL +R F+EVETP L + GG AR F+ T
Sbjct: 159 YVDLIVN-PESRETFRKRSKIISAIRRFL-DNRGFLEVETPML-QPIAGGAAARPFI--T 213
Query: 392 HEPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDI 444
H N Y L +P+ LK+L+ VG +R ++I R +R+E TR PEFT L+
Sbjct: 214 HH-NALDIDLY-LRIAPELYLKRLI-VGGFERVYEIGRNFRNEGIDTR--HNPEFTMLEF 268
Query: 445 ELSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLYG 486
++ +D+M L EEL+ + + F R++ DAI Y
Sbjct: 269 YQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYT 325
|
Length = 491 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-15
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIYRTS 65
R+H CG LR S V + VTLCGW+Q +R +F LRD YG VQV+ + P
Sbjct: 1 RTHYCGELRESHVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDPEEAPEFELAE 60
Query: 66 TL 67
L
Sbjct: 61 KL 62
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 6e-15
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKE--------DLRLKHRYLDFRFPEMQHNLRFR 351
E+ I + ++ +PF +++ ++ + D RL R++D R P R +
Sbjct: 157 ELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQ 216
Query: 352 SKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQL 410
S+ R+FL DF E+ +P + + GGA F + N+F L QSPQ KQ+
Sbjct: 217 SRVCQYFRQFLIDS-DFCEIHSPKIINAPSEGGANVFKLEYF--NRFAYLAQSPQLYKQM 273
Query: 411 LMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-DDVMRLIEELLCY 464
++ G V R F++ +R E++ R EF LD+E+ +V+ L E L Y
Sbjct: 274 VLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNY 329
|
Length = 550 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 4e-14
Identities = 73/269 (27%), Positives = 113/269 (42%), Gaps = 62/269 (23%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLD 338
K++ GE S V + +L+K+ P K + +++R + RYLD
Sbjct: 126 KTKTGELS--------------VSVEELRLLSKS--LRPLPEKFHGLTDKEIRYRQRYLD 169
Query: 339 FRFPEMQHNLRFRSKFLMRT------REFLATHRDFVEVETPTLFKRTPGGA--REFVVP 390
+ N R F+ R+ REFL R F+EVETP L + PGGA R F+
Sbjct: 170 -----LIVNPESRQTFIKRSKIIRAIREFLDD-RGFLEVETPML-QPIPGGAAARPFI-- 220
Query: 391 THEPNKF---YSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIEL 446
TH N L +P+ LK+L+ VG +R F+I R +R+E PEFT L+
Sbjct: 221 THH-NALDMDLYLRIAPELYLKRLI-VGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQ 278
Query: 447 SFTTRDDVMRLIEEL-------LCYCLNIP--------TRTFSRISYNDAISLYGS---- 487
++ +D+M L EEL + + ++ F RI+ DA+ Y
Sbjct: 279 AYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFD 338
Query: 488 ---DKPDLRYDCKIMIAIKEQPPWPSGYP 513
D + + K I+ + G
Sbjct: 339 DLFDDEEAKELAK-KHGIEVEKYGTWGLG 366
|
Length = 502 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 5e-14
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 317 PFHIKNYNKAKEDLRLKHRYLDF-RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375
P K + +++R + RYLD + + RSK L R+F+ R F+EVETP
Sbjct: 152 PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETP- 209
Query: 376 LFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP 433
+ + PGGA R F+ + + L +P+ + L+VG +R F+I R +R+E
Sbjct: 210 MMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV 269
Query: 434 DRQPEFTQLDIELSFTTRDDVMRLIEELL 462
PEFT +++ +++ D++ L E L
Sbjct: 270 RHNPEFTMMELYMAYADYHDLIELTESLF 298
|
Length = 505 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-13
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 751 SAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN 809
A PF T P P+D +S +D+ + G EI G+ R+H EL E
Sbjct: 425 LAVRPFYTMPCPDDPKYSNS---------FDVFIRGEEIISGAQRVHDPELLEKRAEECG 475
Query: 810 IETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
I+ ++ I +F+YG PPHGG +G++R++ + CG +IR FP+
Sbjct: 476 IDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPR 523
|
Length = 530 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 35/236 (14%)
Query: 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRF-PEMQHNLRFRSK 353
G LS V + + +L KA +P K + ++ R + RYLD P+ + RSK
Sbjct: 122 GELS--VHVTELQILTKALRPLP--DKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSK 177
Query: 354 FLMRTREFLATHRDFVEVETPTLFKRTPGGA--REFVVPTHEPNK----FYSLVQSPQQL 407
+ R FL R F+EVETP L + PGGA R F+ TH N Y + L
Sbjct: 178 IIKAIRRFL-DDRGFIEVETPML-QVIPGGANARPFI--THH-NALDMDLYLRIAPELYL 232
Query: 408 KQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL---LCY 464
K+L+ VG ++ ++I R +R+E PEFT ++ ++ +D+M L E L L
Sbjct: 233 KRLI-VGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQ 291
Query: 465 CLNIPT------------RTFSRISYNDAISLYGSDKP---DLRYDCKIMIAIKEQ 505
L T + F RI+ +AI Y + D D + A+ ++
Sbjct: 292 ELLGTTKITYGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKK 347
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-13
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEM 344
EV+AS + VLNKA +PF I + E+LRLK+RYLD R P+M
Sbjct: 92 EVVASELEVLNKAK-TLPFEIDDDVNVSEELRLKYRYLDLRRPKM 135
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-13
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 351 RSKFLMRTREFLATHRDFVEVETP-----TLFKRTPGGAREFVVPTHEPNKFYSLVQSPQ 405
RSK + R F+A F EVETP L ++ ++ + E + L + +
Sbjct: 2 RSKIEQKLRRFMAEL-GFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 406 QLKQLLMVGSV----DRYFQIARCYRDESTR--PDRQPEFTQLDIELSFTTRDD------ 453
L V + R +I +R+E R R EFTQL+ E+ ++
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEE 120
Query: 454 VMRLIEELL 462
++ L EELL
Sbjct: 121 LIELTEELL 129
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 342 PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAREFV-VPTHE-PN 395
+ + L+ +S L TREFL R FVEV P + T G+ V + +
Sbjct: 24 EKYRKVLKVQSSILRYTREFL-DGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYG 82
Query: 396 KFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQP---EFTQLDIELSFTTRD 452
Y L S KQL + + + F ++ +R E D EFTQLDIE+ D
Sbjct: 83 VEYYLADSMILHKQL-ALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLD 141
Query: 453 DVMRLIEELLCYC------------------LNIPTRTFSRISYNDAISL------YGSD 488
+VM LIE+L+ Y L R F RI++ +A+ + G D
Sbjct: 142 EVMDLIEDLIKYLVKELLEEHEDELEFFGRDLPHLKRPFKRITHKEAVEILNEEGCRGID 201
Query: 489 KPDLRYDC-KIMIAIKEQPPWPSGYP 513
+L + K + E+P W P
Sbjct: 202 LEELGSEGEKSLSEHFEEPFWIIDIP 227
|
Length = 335 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 9e-13
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 300 EVIASNITVLNKADVNIPFHI-----------------KNYNKAKEDLRLKHRYLDFRFP 342
E+ I ++KA +PF++ + + +D RL +R LD R P
Sbjct: 160 EIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTP 219
Query: 343 EMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGARE---FVVPTHEPNKFYS 399
Q R +S+ REFL + + FVE+ TP L GA E V +
Sbjct: 220 ANQAIFRIQSQVCNLFREFLLS-KGFVEIHTPKLI----AGASEGGSAVFRLDYKGQPAC 274
Query: 400 LVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-DDVMRL 457
L QSPQ KQ+ + G R F+I +R E + R EFT LD+E+ +V+ +
Sbjct: 275 LAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDV 334
Query: 458 IEELLCY 464
++EL
Sbjct: 335 VDELFVA 341
|
Length = 530 |
| >gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 366 RDFVEVETPTLFKRTPGGARE---------FVVPTHEPNKFYSLVQSPQ-QLKQLLMVGS 415
R +EVETP L +P + FV P + Y L SP+ +K+LL GS
Sbjct: 5 RGVLEVETPLL---SPAPVTDPHLDAFATEFVGPDGQGRPLY-LQTSPEYAMKRLLAAGS 60
Query: 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSR 475
FQI + +R+ PEFT L+ D+M +E LL L P R
Sbjct: 61 G-PIFQICKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPFAPAER 119
Query: 476 ISYNDA 481
+SY +A
Sbjct: 120 LSYQEA 125
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown [Unknown function, General]. Length = 290 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.9 bits (170), Expect = 6e-12
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIV 53
R+H CG LR S V +TVTLCGW+ +R D F LRD G VQV+
Sbjct: 4 RTHYCGELRESHVGQTVTLCGWVHRRR-DHGGLIFIDLRDREGIVQVVF 51
|
Length = 588 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 25/128 (19%)
Query: 733 FWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGG 791
+++ D+P + PF T P ++ + S +DL+ EI G
Sbjct: 316 YFITDWP-----------TEIRPFYTMPDEDNPEISKS---------FDLMYRDLEISSG 355
Query: 792 SIRIHSSE-LQESI-LHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSI 849
+ RIH + L E I LN E + ++AF YG PPH G LG +R + L G ++I
Sbjct: 356 AQRIHLHDLLVERIKAKGLNPE--GFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNI 413
Query: 850 RDVIAFPK 857
R+ + FP+
Sbjct: 414 REAVLFPR 421
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 787 EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGT 846
EI GGS R + E+ + + ++T +L + KYG PH G LG +RL++ + G
Sbjct: 376 EIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGL 435
Query: 847 QSIRDVIAFPK 857
++IRD I FP+
Sbjct: 436 ENIRDAIPFPR 446
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 51/164 (31%), Positives = 69/164 (42%), Gaps = 25/164 (15%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-------AREFVVPTHEPNKFYS 399
NL R+ + R F A R +EVETP L P EF+ P K
Sbjct: 15 NLLKRAAIIAAIRRFFA-ERGVLEVETPAL-SVAPVTDIHLHPFETEFLGPGGAKGKPLW 72
Query: 400 LVQSPQ-QLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLI 458
L SP+ +K+LL GS FQ+ + +R+E PEFT L+ + D RL+
Sbjct: 73 LHTSPEYHMKRLLAAGSGP-IFQLGKVFRNEEMGRLHNPEFTMLEW---YRVGCDYYRLM 128
Query: 459 EE---LLCYCLNIPTRTFSRISYNDA------ISLYGSDKPDLR 493
E LL L R+SY +A I +DK +LR
Sbjct: 129 NEVDDLLQLVLE--CVEAERLSYQEAFLRYLGIDPLSADKTELR 170
|
Length = 322 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-11
Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 19/142 (13%)
Query: 331 RLKHRYLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREF 387
R++ RYLD PE + LR RS + RE L R F+EVETP L ++ GG AR F
Sbjct: 752 RVRQRYLDLAVNPEARDLLRARSAVVRAVRETL-VARGFLEVETPIL-QQVHGGANARPF 809
Query: 388 VVPTHEPNKF----YSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQL 442
V TH N + Y L +P+ LK+ L VG V+R F++ R +R+E PEFT L
Sbjct: 810 V--TH-INAYDMDLY-LRIAPELYLKR-LCVGGVERVFELGRNFRNEGVDATHNPEFTLL 864
Query: 443 DIELSFTTRD-DVMR-LIEELL 462
+ + D D MR L EL+
Sbjct: 865 EAYQAHA--DYDTMRDLTRELI 884
|
Length = 1094 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 3e-10
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 746 SGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESI 804
S S+ PF T +DE +S YD+ + G EI G+ RIH +L +
Sbjct: 440 SDRFPSSARPFYTMECKDDERFTNS---------YDMFIRGEEISSGAQRIHDPDLLLAR 490
Query: 805 LHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
LN++ + ++ + +F+ G PHGG +G++R++ + G ++R FP+
Sbjct: 491 AKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPR 543
|
Length = 550 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 4e-10
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 13/143 (9%)
Query: 328 EDLRLKHRYLDFRFPEMQHN------LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP 381
+D +K+RY RF +M N ++ R L R++ R+FVEVETP L
Sbjct: 210 QDNDVKYRY---RFTDMMTNPCVIETIKKRHVMLQALRDYF-NERNFVEVETPVLHTVAS 265
Query: 382 GG-AREFVVPTHEPNKFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEF 439
G A+ FV + L +P+ LKQ + VG ++R ++I + +R+E PEF
Sbjct: 266 GANAKSFVTHHNANAMDLFLRVAPELHLKQCI-VGGMERIYEIGKVFRNEDADRSHNPEF 324
Query: 440 TQLDIELSFTTRDDVMRLIEELL 462
T + ++ T +D+M + E++
Sbjct: 325 TSCEFYAAYHTYEDLMPMTEDIF 347
|
Length = 659 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 7e-10
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIVPNHQVPNIYRT 64
R+H CG LR S V +TVTL GW+ +R D F LRD G VQV+ P +
Sbjct: 2 RTHYCGELRESHVGQTVTLSGWVHRRR-DHGGLIFIDLRDREGIVQVVFDPEDSPEAFEV 60
|
Length = 585 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 8e-10
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 37/235 (15%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLD 338
KS+KGE S + KE I +L+ +P Y ++R + RYLD
Sbjct: 200 KSKKGELS---------IFPKETI-----ILSPCLHMLPM---KYGLKDTEIRYRQRYLD 242
Query: 339 FRFPE-MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPN-- 395
E + R+K + R FL R F+EVETPT+ GGA TH +
Sbjct: 243 LMINESTRSTFITRTKIINYLRNFL-NDRGFIEVETPTM-NLVAGGANARPFITHHNDLD 300
Query: 396 -KFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454
Y + + LK +L+VG +D+ ++I + +R+E PEFT + ++ D+
Sbjct: 301 LDLYLRIATELPLK-MLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDL 359
Query: 455 MRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWP 509
++ E+ + T+ +I YN D P+ K I I PP+P
Sbjct: 360 IKWSEDFFSQLVMHLFGTY-KILYN-------KDGPE-----KDPIEIDFTPPYP 401
|
Length = 585 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 61.6 bits (151), Expect = 9e-10
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
++A +YG PP GG+ +GIDRL+ +L + SIRDVI FP
Sbjct: 448 LRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
|
Length = 491 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+ A +YG PP GG+ +GIDRL+ +L + SIRDVI FP
Sbjct: 288 VTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-09
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD- 194
RVLD+G G G ++ L ++ ++ S + +E A+E KL +
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA-----KLALGPRITFVQG 58
Query: 195 --FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
DL +D ++I +L+ L+ +L G +++
Sbjct: 59 DAPDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
++A +YG PP GG+ +GIDRL+ +L + SIRDVI FP
Sbjct: 459 VEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFP 496
|
Length = 502 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
RVLD+G G G ++ L + ++ ++ S +E A++ L V D +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---LLADNVEVLKGDAE 57
Query: 197 --PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241
P + + +DVI L ++ ED+ +FL +++L G++++
Sbjct: 58 ELPPEADESFDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
A +YG PP GG LGIDRL+ +L + SIRDVIAFP
Sbjct: 510 CTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAFP 547
|
Length = 553 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 139 LDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197
LD+G G G + + LL + ++ S +E A E + + + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA-I 59
Query: 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 238
+ +DV+ VL + D L +++L G++
Sbjct: 60 DLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-08
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIVPNHQVPNI 61
+ +RSH CGAL ++DV VTLCGW+ R DM F +RD G VQV+ + P
Sbjct: 56 WPSRSHLCGALSVNDVGSRVTLCGWVDLHR-DMGGLTFLDVRDHTGIVQVVTLPDEFPEA 114
Query: 62 YRT 64
+RT
Sbjct: 115 HRT 117
|
Length = 652 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
++A +YG PP GG+ +GIDRL+ +L ++SIRDVI FP
Sbjct: 453 VEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 139 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 198
LDVG G G +++ L + ++ ++ S + + A++ E
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAE 49
Query: 199 DLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
DL +DV+ VL + D + L ++L G ++I
Sbjct: 50 DLPFPDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 8e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 787 EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGT 846
EI GGS R ++ E+ + L + + +YG PH G LG +RL++ + G
Sbjct: 373 EIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGL 432
Query: 847 QSIRDVIAFP 856
+IRDVI FP
Sbjct: 433 DNIRDVIPFP 442
|
Length = 450 |
| >gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTL------------FKRTPGGAREFVVPTHEP 394
NL R+K + R F A R +EVETP L F+ FV P
Sbjct: 4 NLLKRAKIIAEIRRFFA-DRGVLEVETPILSQATVTDIHLVPFET------RFVGPGASQ 56
Query: 395 NKFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDD 453
K L+ SP+ +K+LL GS FQI + +R+E PEFT L+
Sbjct: 57 GKTLWLMTSPEYHMKRLLAAGSGP-IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYR 115
Query: 454 VMRLIEELLCYCLNIPTRTFSRISYNDA 481
+M +++LL L+ +SY A
Sbjct: 116 LMNEVDDLLQQVLD--CEPAESLSYQQA 141
|
Length = 306 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 39/133 (29%)
Query: 737 DFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIH 796
DFP S S P T+PH D L +DLV G E+G
Sbjct: 982 DFPT---SVS--------PLTRPHRSDPGLAE---------RWDLVAWGVELGTAY---- 1017
Query: 797 SSELQESILHFLNIETSSL-------QHM------IQAFKYGCPPHGGIALGIDRLMSIL 843
SEL + + + SL + M +QA +Y PP GG+ +G+DRL+ +L
Sbjct: 1018 -SELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLL 1076
Query: 844 CGTQSIRDVIAFP 856
G +SIR+ + FP
Sbjct: 1077 TG-RSIRETLPFP 1088
|
Length = 1094 |
| >gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 816 QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIA 854
+ + A + G P G+ALG+DRL+ + G SI DV+A
Sbjct: 252 ERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLA 290
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown [Unknown function, General]. Length = 290 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 50/203 (24%), Positives = 74/203 (36%), Gaps = 47/203 (23%)
Query: 328 EDLRLKHRYLDFRFPEMQHNLRFRSKFL---MRTREFL--ATHR-----DFVEVETPTLF 377
+D L+ + F +LR R+ L MR R L A HR F V P L
Sbjct: 105 DDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILT 164
Query: 378 KRTPGGARE-FVVPTHEP-------NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDE 429
GA E F V T K L S QL ++ + + +R E
Sbjct: 165 SNDCEGAGELFRVSTGNIDFSQDFFGKEAYLTVS-GQLYLETYALALSKVYTFGPTFRAE 223
Query: 430 STRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCL---------------------- 466
+ R EF ++ E++F +D+++L E L+ Y +
Sbjct: 224 KSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDL 283
Query: 467 -----NIPTRTFSRISYNDAISL 484
NI F+RI+Y DAI +
Sbjct: 284 IKRLENIINNKFARITYTDAIEI 306
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 39/132 (29%)
Query: 359 REFLATHRDFVEVETPT-----LFKRTPG---------------GAREFV-VPTHEP--- 394
RE L + EV+TP L++ + G E PT E
Sbjct: 10 RELL-KRYGYQEVDTPILEPKELWEGSGHWDDYFEEEMYKFKDRGGEELYLRPTAEVGIT 68
Query: 395 NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPD----RQPEFTQLDIELSFTT 450
F + + S ++L + +QI C+R E RP R EFTQ+D E F T
Sbjct: 69 RLFKNEILSYRELPL--------KLYQIGPCFRYE-ARPRRGLGRVREFTQVDAE-IFGT 118
Query: 451 RDDVMRLIEELL 462
+ +EELL
Sbjct: 119 PEQSEEELEELL 130
|
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 171 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 28/77 (36%), Positives = 37/77 (48%)
Query: 781 LVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLM 840
LV E+ GGS R E E+ L L + S + +YG PH G LG +RL+
Sbjct: 482 LVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLV 541
Query: 841 SILCGTQSIRDVIAFPK 857
G +IRD I FP+
Sbjct: 542 QFATGIDNIRDAIPFPR 558
|
Length = 565 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQ-ESILHFLNIETSSL-------QHMIQAFKYGCPPHG 830
++ + G EIG G ++ +E Q E +N + + + + A +YG PP
Sbjct: 414 FEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTA 473
Query: 831 GIALGIDRLMSILCGTQSIRDVIAFP 856
G+ +GIDR++ + + +IRDVI FP
Sbjct: 474 GLGIGIDRMIMLFTNSHTIRDVILFP 499
|
Length = 505 |
| >gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine N1-methyltranferase | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 40/138 (28%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA-------------------- 173
+ R LD+G +GR S + LA++FD++D ++ S++FI A
Sbjct: 41 SRKRALDIGCAVGRAS-FELARYFDEVDGIDFSARFIRPAVALKERGSLRYALKEEGELV 99
Query: 174 --KEEILKDCDKLDKCY-NVGIQDFKPED-LNIK-----YDVIWIQWVLMFILDE--DII 222
KE L D LD+ V F D N+K YD+I + +LD D
Sbjct: 100 SFKEVTLSDL-GLDEVRDRV---SFFQGDACNLKPHFTGYDLI----LAANLLDRLYDPA 151
Query: 223 KFLNLCKQILNKNGIIII 240
FL+ + LN G+++I
Sbjct: 152 AFLSSIHERLNPGGLLVI 169
|
Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes C-terminal putative 4-mercaptohistidine N1-methyltranferase domain [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 242 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-05
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 24 TVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIYRT 64
VTL GW+ ++R +F LRD G VQV+V ++ +
Sbjct: 1 EVTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEELGEFFEE 44
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
PP G+ALG DRL+ + G +SI DVIAFP
Sbjct: 289 PPCSGVALGFDRLVMLALGAESIDDVIAFP 318
|
Length = 322 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVI 52
R+H CG LR + +TVTL GW+ +R D+ F LRD G VQV+
Sbjct: 2 RTHYCGQLRTEHLGQTVTLAGWVNRRR-DLGGLIFIDLRDRSGIVQVV 48
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 125 LYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD 182
L + PGK LD+G G GR S YL FD +D+ +QS + +++ E+ +
Sbjct: 113 LEAVQTVKPGKA--LDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK-----E 165
Query: 183 KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIII 239
L+ G+ D + +YD I VLMF+ E IIK N+ + N G +
Sbjct: 166 NLN--IRTGLYDINSASIQEEYDFILSTVVLMFLNRERIPAIIK--NMQEHT-NPGGYNL 220
Query: 240 I 240
I
Sbjct: 221 I 221
|
Length = 287 |
| >gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 816 QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852
+++I A + G P G+ALG+DRL+ + G +SI +V
Sbjct: 270 ENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306
|
Length = 306 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 781 LVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLM 840
LV E+ GGS R + E + ++ + S Q K+G PH G LG +RL+
Sbjct: 503 LVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLI 562
Query: 841 SILCGTQSIRDVIAFPK 857
++ G +I+D I FP+
Sbjct: 563 MLVTGVDNIKDTIPFPR 579
|
Length = 586 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 821 AFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+ +YG PP GG+ LGIDR+ L I+DVI FP
Sbjct: 544 SLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
|
Length = 585 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165
G IS I+ + + LS + + S +VLD+G+G+G KY+ K+ + ++
Sbjct: 29 GEDYISSGGIEATTKILSDIELNENS-----KVLDIGSGLGGGCKYINEKYGAHVHGVDI 83
Query: 166 SSKFIEQAKEEILKDCDKLD-KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKF 224
K + AK D +K++ + ++ +DF PE+ +D+I+ + ++ + D K
Sbjct: 84 CEKMVNIAKLRN-SDKNKIEFEANDILKKDF-PEN---TFDMIYSRDAILHLSYADKKKL 138
Query: 225 LNLCKQILNKNGIIIIKDNVASGVKNEYDDE 255
C + L NGI++I D A ++N +D+E
Sbjct: 139 FEKCYKWLKPNGILLITDYCADKIEN-WDEE 168
|
Length = 263 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (100), Expect = 2e-04
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 5/133 (3%)
Query: 133 PGKTRVLDVGAGIGRISKYL-LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
PG VLD+G G GR++ L + ++ S + + A+ L
Sbjct: 47 PGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVAD 106
Query: 192 IQDFK-PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 250
P + + +D++ VL + K L ++L G +++ D + G+
Sbjct: 107 ALGGVLPFEDSASFDLVISLLVLHLL---PPAKALRELLRVLKPGGRLVLSDLLRDGLLE 163
Query: 251 EYDDEDSSVVRSL 263
+
Sbjct: 164 GRLAALLGFGDPV 176
|
Length = 257 |
| >gnl|CDD|145868 pfam02938, GAD, GAD domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 609 SETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTK 668
SE G V + L +P + K+I E + AK+ F ++ +KV+ T + K
Sbjct: 2 SEALKKGGSV-KALCVPGGAGLSRKQIDELERFAKE-FGAKGLAWIKVEG-GGHTGPIAK 58
Query: 669 ILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLL 704
L + VEE + + GD+++ K++ V L
Sbjct: 59 FLTEEEVEELLERVGAQNGDILLFVADKEKVVNKAL 94
|
This domain is found in some members of the GatB and aspartyl tRNA synthetases. Length = 94 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 23 KTVTLCGWLQNQRVDM----FALLRDAYGQVQVIVPNHQVPNIYRTS 65
+ VTL GW+ R D+ F +LRD G +QV+V ++ T
Sbjct: 17 EEVTLAGWVHEIR-DLGGIAFLILRDRSGIIQVVVKKKVDEELFETI 62
|
Length = 437 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 103 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLL--AKHFDKI 160
ML+ S SDLD + + LS L GK+ VL++GAGIGR + L A +
Sbjct: 13 MLD--SKASDLDKEERPEILSLL----PPYEGKS-VLELGAGIGRFTGELAKKAGQVIAL 65
Query: 161 DLLEQSSKFIEQAKEEILKDCDKLDK--CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218
D +E K K E + K K C +V D D ++ D+I+ W+LM++ D
Sbjct: 66 DFIESVIK-----KNESINGHYKNVKFMCADVTSPDLNISDGSV--DLIFSNWLLMYLSD 118
Query: 219 EDI 221
+++
Sbjct: 119 KEV 121
|
Length = 475 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+++ + G PP G +GIDR + +L + +IRD I FP
Sbjct: 523 LKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
|
Length = 659 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.004
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 24 TVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIYRTSTL---ASLPIF 73
V + GW+ R MF +LRD G +Q ++ V Y +L +S+ +
Sbjct: 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVT 56
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 138 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197
+LD+G G GR+ + L + ++ S + +E AKE + + D
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERL----RDKGPKVRFVVADA-- 54
Query: 198 EDL---NIKYDVIWIQWVLMFIL-DEDIIKFLNLCKQILNKNG 236
DL +D++ + + L + + L ++L G
Sbjct: 55 RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 25/160 (15%)
Query: 121 FLSSLYCQKKSDPGKTRVLDVGAGIG------RISKYLLAKHFDKIDLLEQSSKFIEQAK 174
L SL D RVLD+G+G G I+ ++ L + F+ + K
Sbjct: 54 ILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA--FPDLKVTLLESLGKKIAFLREVK 111
Query: 175 EEILKDCDKLD--KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 232
+E+ L+ + + ++F E +YDV+ + V + L LC +L
Sbjct: 112 KEL-----GLENVEIVHGRAEEFGQEKK--QYDVVTSRAV------ASLNVLLELCLPLL 158
Query: 233 NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272
G + K+E + + +++ Q +FS
Sbjct: 159 KVGGGFLAY--KGLAGKDELPEAEKAILPLGGQVEKVFSL 196
|
Length = 215 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 883 | |||
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| KOG2411|consensus | 628 | 100.0 | ||
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| KOG0556|consensus | 533 | 100.0 | ||
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| KOG1885|consensus | 560 | 100.0 | ||
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| KOG0554|consensus | 446 | 100.0 | ||
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| KOG0555|consensus | 545 | 100.0 | ||
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.74 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.72 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.68 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.66 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.65 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.64 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.61 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.59 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.59 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.59 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.58 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.56 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.55 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.53 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.53 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.51 | |
| KOG1540|consensus | 296 | 99.51 | ||
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| KOG1270|consensus | 282 | 99.5 | ||
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.5 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.48 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.48 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.48 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.48 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.47 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.47 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.45 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.45 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.43 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.42 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.41 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.39 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.39 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.38 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.38 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.38 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.38 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.38 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.37 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.36 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.36 | |
| KOG4300|consensus | 252 | 99.36 | ||
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.36 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.36 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.36 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.36 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.35 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.32 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.3 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.29 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.29 | |
| KOG1271|consensus | 227 | 99.29 | ||
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.28 | |
| KOG3178|consensus | 342 | 99.28 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.27 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.27 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.26 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.25 | |
| KOG2361|consensus | 264 | 99.25 | ||
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.25 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.24 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.24 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.21 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.18 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.18 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.18 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.16 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.14 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.14 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.14 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.14 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.14 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.13 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.13 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.12 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.12 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.12 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.12 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.11 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.1 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.1 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.09 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.09 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.08 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.08 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.08 | |
| KOG1541|consensus | 270 | 99.07 | ||
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.07 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.05 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.05 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.05 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.04 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.03 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.03 | |
| PRK04028 | 630 | glutamyl-tRNA(Gln) amidotransferase subunit E; Val | 99.0 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.99 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.99 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.99 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.99 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.99 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.99 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.98 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.98 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.98 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.97 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.96 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.96 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.96 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.96 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 98.94 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.94 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.92 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.92 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.91 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.9 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.9 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 98.89 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.87 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.86 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.85 | |
| PF02938 | 95 | GAD: GAD domain; InterPro: IPR004115 This entry re | 98.83 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.82 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.81 | |
| KOG1975|consensus | 389 | 98.8 | ||
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.8 | |
| KOG3010|consensus | 261 | 98.8 | ||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.8 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.79 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.78 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.77 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.76 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.76 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.74 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.73 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.73 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 98.73 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.72 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.7 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.67 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.67 | |
| PLN02366 | 308 | spermidine synthase | 98.65 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.65 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.63 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.62 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.6 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.59 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.58 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.57 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.56 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.56 | |
| KOG2899|consensus | 288 | 98.54 | ||
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.53 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.51 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.5 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.5 | |
| KOG1499|consensus | 346 | 98.49 | ||
| KOG2940|consensus | 325 | 98.48 | ||
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.47 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.46 | |
| PLN02476 | 278 | O-methyltransferase | 98.45 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.44 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.44 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.39 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 98.37 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.36 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.33 | |
| KOG1500|consensus | 517 | 98.31 | ||
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.3 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.29 | |
| KOG3045|consensus | 325 | 98.27 | ||
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.27 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.26 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.25 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 98.25 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.22 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.21 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.21 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.2 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.17 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.17 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.17 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.17 | |
| KOG2904|consensus | 328 | 98.16 | ||
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.16 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.15 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.13 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.12 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.11 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.1 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.1 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 98.09 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.07 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.07 | |
| PLN02823 | 336 | spermine synthase | 98.07 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.05 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.05 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.03 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.02 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.02 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.02 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 98.01 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.01 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.0 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.97 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.97 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.95 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.95 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.94 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 97.93 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.92 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.91 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.89 | |
| KOG1331|consensus | 293 | 97.88 | ||
| KOG3420|consensus | 185 | 97.88 | ||
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.87 | |
| KOG3987|consensus | 288 | 97.86 | ||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.86 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.86 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.83 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.83 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.8 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.8 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.79 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.79 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 97.79 | |
| KOG1661|consensus | 237 | 97.78 | ||
| KOG1269|consensus | 364 | 97.77 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.74 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.74 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.74 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.73 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.72 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.7 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.68 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 97.65 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.65 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.64 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.64 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 97.62 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.59 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.58 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.55 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.53 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.52 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.49 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.49 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.47 | |
| KOG2352|consensus | 482 | 97.47 | ||
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.46 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.46 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.44 | |
| KOG3191|consensus | 209 | 97.43 | ||
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.43 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.41 | |
| TIGR00134 | 620 | gatE_arch glutamyl-tRNA(Gln) amidotransferase, sub | 97.4 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.39 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.39 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.38 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.38 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 97.35 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.34 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.34 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.32 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.31 | |
| KOG0820|consensus | 315 | 97.28 | ||
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.26 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.25 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.22 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.21 | |
| KOG1663|consensus | 237 | 97.18 | ||
| KOG3201|consensus | 201 | 97.17 | ||
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.17 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.15 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.14 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.13 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.09 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.08 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 97.07 | |
| KOG1709|consensus | 271 | 97.07 | ||
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.07 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 97.07 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 97.04 | |
| KOG2798|consensus | 369 | 96.97 | ||
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 96.95 | |
| KOG2187|consensus | 534 | 96.94 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.94 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 96.9 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 96.9 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.88 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 96.82 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 96.78 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 96.78 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.74 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 96.74 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 96.73 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.72 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 96.69 | |
| KOG2784|consensus | 483 | 96.67 | ||
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.64 | |
| KOG2915|consensus | 314 | 96.56 | ||
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 96.55 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.55 | |
| KOG0555|consensus | 545 | 96.49 | ||
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.38 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.37 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.37 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.36 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 96.29 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 96.28 | |
| KOG1936|consensus | 518 | 96.28 | ||
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.23 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 96.23 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 96.17 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 96.11 | |
| KOG1122|consensus | 460 | 96.03 | ||
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 95.96 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 95.92 | |
| KOG3115|consensus | 249 | 95.87 | ||
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.69 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 95.66 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.65 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 95.61 | |
| KOG2324|consensus | 457 | 95.6 | ||
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 95.52 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 95.37 | |
| KOG2730|consensus | 263 | 95.26 | ||
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.24 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 95.23 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.17 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.14 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.98 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 94.74 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 94.69 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 94.59 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.51 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.43 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 94.41 | |
| KOG4589|consensus | 232 | 94.34 | ||
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 94.23 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.21 | |
| PHA01634 | 156 | hypothetical protein | 94.2 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.19 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.02 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 94.01 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 93.89 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.82 | |
| KOG1501|consensus | 636 | 93.82 | ||
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 93.82 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 93.17 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 93.16 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.01 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.84 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 92.83 | |
| KOG2920|consensus | 282 | 92.8 | ||
| KOG2793|consensus | 248 | 92.67 | ||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.53 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 92.53 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.52 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.4 | |
| KOG2198|consensus | 375 | 92.39 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 92.3 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 92.09 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.08 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 91.82 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 91.19 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 90.97 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.52 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 90.43 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 89.94 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 89.81 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 89.73 | |
| KOG4058|consensus | 199 | 89.28 | ||
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.1 | |
| KOG1562|consensus | 337 | 88.59 | ||
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 87.43 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 86.55 | |
| KOG2539|consensus | 491 | 86.34 | ||
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 85.72 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 85.47 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 85.02 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 84.64 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 84.32 | |
| KOG2651|consensus | 476 | 84.32 | ||
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 84.2 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 83.99 | |
| KOG1035|consensus | 1351 | 83.94 | ||
| KOG1596|consensus | 317 | 83.59 | ||
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 83.33 | |
| KOG1099|consensus | 294 | 83.23 | ||
| KOG0822|consensus | 649 | 82.95 | ||
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 82.51 | |
| PRK13699 | 227 | putative methylase; Provisional | 82.37 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 81.77 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 81.63 | |
| KOG2783|consensus | 436 | 81.42 | ||
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 81.37 |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-138 Score=1153.14 Aligned_cols=482 Identities=44% Similarity=0.751 Sum_probs=453.8
Q ss_pred cccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 295 ~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
..+++||.+++++|+|++ .++||.+.+.....+++||+|||||||++.++.++++|++++.++|+|| +++||+||+||
T Consensus 89 ~TGeiEv~a~~i~vln~s-~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~l-d~~gF~EiETP 166 (585)
T COG0173 89 PTGEIEVLAEEIEVLNAS-KTLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFL-DDQGFLEIETP 166 (585)
T ss_pred CcceEEEEeeeEEEEecC-CCCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-hhcCCeEeecC
Confidence 346899999999999999 8999999887778999999999999999999999999999999999999 78999999999
Q ss_pred eeccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHH
Q psy8372 375 TLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDD 453 (883)
Q Consensus 375 ~l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~d 453 (883)
+|++|||+||+.|.||++ ++|++|+|+||||+|||+||++|++|||||++|||+|+.+.+|+|||||+|+||+|.+.+|
T Consensus 167 iLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ed 246 (585)
T COG0173 167 ILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEED 246 (585)
T ss_pred ccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCHHH
Confidence 999999999999999998 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 454 VMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSR 528 (883)
Q Consensus 454 vm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 528 (883)
||+++|+|++++|+. +++||+||||+|||.+||+||||+||+++|+| +++.
T Consensus 247 v~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~d-vt~~----------------------- 302 (585)
T COG0173 247 VMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELID-VTDL----------------------- 302 (585)
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCCCcccCCceehh-HHHH-----------------------
Confidence 999999999999986 67899999999999999999999999999999 8877
Q ss_pred CCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCc
Q psy8372 529 RGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNR 608 (883)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (883)
|+ +++| ++|+... ..+|.|++
T Consensus 303 ----~~-----------------------------~~~F--------~vF~~~~-----~~~~~v~a------------- 323 (585)
T COG0173 303 ----FK-----------------------------DSEF--------KVFSNAL-----ANGGRVKA------------- 323 (585)
T ss_pred ----hc-----------------------------CCCc--------ceehhhh-----hcCCeEEE-------------
Confidence 43 2233 3333333 44556666
Q ss_pred ccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCc
Q psy8372 609 SETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGD 688 (883)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 688 (883)
|++|+++.+||+++++|.++|+. +|.+++.|++++++. +.++++|+++++..++|.+++++++||
T Consensus 324 -------------i~vp~~~~~sRk~id~~~~~ak~-~gakGLa~ikv~~~~-~~gpi~kfl~e~~~~~l~~~~~~~~gD 388 (585)
T COG0173 324 -------------IVVPGGASLSRKQIDELTEFAKI-YGAKGLAYIKVEEDG-LKGPIAKFLSEEILEELIERLGAEDGD 388 (585)
T ss_pred -------------EEcCCccccCHHHHHHHHHHHHH-cCCCceEEEEEecCC-ccchHHHhcCHHHHHHHHHHhCCCCCC
Confidence 99999988999999999999987 679999999998776 899999999999999999999999999
Q ss_pred EEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCChhhh
Q psy8372 689 LIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPEDEHLL 767 (883)
Q Consensus 689 ~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d~~~~ 767 (883)
+++|.++....+.++||++|.+++ +.+ ++.+++.|+|+||||||||||+|+ |+|.++|||||||+++|...+
T Consensus 389 ~iff~A~~~~~~~~~lGalR~~l~-----~~l--~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l 461 (585)
T COG0173 389 IIFFVADKKKVVNKALGALRLKLG-----KEL--GLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELL 461 (585)
T ss_pred EEEEecCcHHHHHHHHHHHHHHHH-----HHh--CCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhh
Confidence 999999998899999999999999 655 899999999999999999999988 999999999999999999988
Q ss_pred ccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHH
Q psy8372 768 SSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSIL 843 (883)
Q Consensus 768 ~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l 843 (883)
.++|..++|.+||||+||+||||||+|||++++|+++|+.+|++++ .|+++|+||+||+|||||+|+|||||||+|
T Consensus 462 ~~~p~~~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll 541 (585)
T COG0173 462 EADPESVRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLL 541 (585)
T ss_pred hcCHHHhhhhhccEEeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 599999999999999999999999999999
Q ss_pred hCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 844 CGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 844 ~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
+|.+|||||||||||.+|.|||++||+.|+++||+||||+
T Consensus 542 ~g~~sIReVIAFPKt~~a~dllt~APs~v~~~qL~El~i~ 581 (585)
T COG0173 542 TGAESIRDVIAFPKTQQAADLLTNAPSEVDEKQLKELSIK 581 (585)
T ss_pred cCCCchhheeecCCCccccccccCCCCcCCHHHHHhccee
Confidence 9999999999999999999999999999999999999985
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-123 Score=1076.74 Aligned_cols=477 Identities=39% Similarity=0.665 Sum_probs=431.7
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc----CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcC-CCeEEE
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY----NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATH-RDFVEV 371 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~----~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~-~gF~EV 371 (883)
+++||.++++++++++..++||.+.+. ...++++|++|||||||++.++++|++||+|++++|+|| .+ +||+||
T Consensus 148 GeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl-~~~~gFiEV 226 (652)
T PLN02903 148 GSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYL-EDVHGFVEI 226 (652)
T ss_pred CCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHH-HhcCCeEEE
Confidence 368999999999999977899887542 236799999999999999999999999999999999999 65 899999
Q ss_pred cCCeeccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 372 ETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 372 ~TP~l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
+||+|++++++||++|.++++ .++.+|||+||||+|||++|++|++||||||||||+|+++++|||||||||+||+|.|
T Consensus 227 eTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 227 ETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 306 (652)
T ss_pred ECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecCCC
Confidence 999999999999999888766 4578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGF 525 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 525 (883)
++|+|+++|+||+++++. +..||+||||.|||++||+||||+||+++|.| +++.
T Consensus 307 ~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~d-v~~~-------------------- 365 (652)
T PLN02903 307 LEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVD-VSDV-------------------- 365 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeE-hHHh--------------------
Confidence 999999999999999974 55799999999999999999999999999999 8877
Q ss_pred CCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccc
Q psy8372 526 DSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFR 605 (883)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (883)
|. +++| +.++..+ .++|.|+|
T Consensus 366 -------~~-----------------------------~~~f--------~~f~~~~-----~~~~~v~~---------- 386 (652)
T PLN02903 366 -------FA-----------------------------ESSF--------KVFAGAL-----ESGGVVKA---------- 386 (652)
T ss_pred -------hc-----------------------------CCCc--------hhhhhhh-----ccCCeEEE----------
Confidence 33 2233 2222222 45777777
Q ss_pred cCcccccCCCccceeeeecCCccccchhhH----HHHHHHHHHhcCCCcceEEEecCcccccc--cccccCChhhHHHHH
Q psy8372 606 SNRSETKSSGEDVYRILILPKDLDSTNKKI----TEYKNLAKKAFNDVKMSTVKVQDSLEWTN--KLTKILPDLNVEEFR 679 (883)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 679 (883)
|++|++++++++.+ +.+.+.++. |.+++.|+++.++..|.+ +++|+++++..++|.
T Consensus 387 ----------------i~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~ 448 (652)
T PLN02903 387 ----------------ICVPDGKKISNNTALKKGDIYNEAIKS--GAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLL 448 (652)
T ss_pred ----------------EEeCCCCccchhhhcccHHHHHHHHHc--CCCceEEEEEcCCCCccCccchhhcCCHHHHHHHH
Confidence 89998777888888 777777764 788899999854435766 899999999999999
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQ 758 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~ 758 (883)
+.+++++||+|+|.+++...++++||+||.+++ +.+ ++.+++.|+|+||||||||+++|+ ++|.|+|||||+
T Consensus 449 ~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~-----~~l--~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTa 521 (652)
T PLN02903 449 AACGAGPGDLILFAAGPTSSVNKTLDRLRQFIA-----KTL--DLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTA 521 (652)
T ss_pred HHhCCCCCcEEEEECCcchHHHHHHHHHHHHHH-----HHc--CCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCC
Confidence 999999999999999988889999999999999 655 788888999999999999999997 999999999999
Q ss_pred CCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceec
Q psy8372 759 PHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIAL 834 (883)
Q Consensus 759 p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~gl 834 (883)
|+++|...+ .++++++||||+||+||||||+||||+++|+++|+.+|++++ .|+|||+||+||+|||||||+
T Consensus 522 p~~~d~~~l----~~~~a~~YDLVlNG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~al 597 (652)
T PLN02903 522 PNPEDMGDL----SSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAY 597 (652)
T ss_pred CCCcchhhh----hhhhhhcceeEecceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceee
Confidence 999997654 489999999999999999999999999999999999999986 499999999999999999999
Q ss_pred cHHHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 835 GIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 835 GldRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
|||||||+|+|.+||||||+||||.+|+|||++||+.|+++||+||||+
T Consensus 598 GldRlvmll~~~~~IrdviaFPKt~~g~dlm~~aPs~v~~~qL~el~i~ 646 (652)
T PLN02903 598 GLDRLVMLLAGAKSIRDVIAFPKTTTAQCALTRAPSEVDDKQLQDLSIA 646 (652)
T ss_pred cHHHHHHHHcCCCchHheEecCCCCCccccccCCCCcCCHHHHHhcceE
Confidence 9999999999999999999999999999999999999999999999985
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-122 Score=1082.21 Aligned_cols=480 Identities=38% Similarity=0.651 Sum_probs=435.5
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc-----------CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcC
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY-----------NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATH 365 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~-----------~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~ 365 (883)
+++||.++++++++++ .++||.+.+. ...++++|++|||||||++.++++|++||+|++++|+|| .+
T Consensus 95 g~iEl~~~~i~iL~~a-~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl-~~ 172 (706)
T PRK12820 95 GDIEVFVRELSILAAS-EALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFL-DS 172 (706)
T ss_pred CcEEEEeeEEEEEecC-CCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3689999999999998 4788877543 235789999999999999999999999999999999999 68
Q ss_pred CCeEEEcCCeeccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccc
Q psy8372 366 RDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDI 444 (883)
Q Consensus 366 ~gF~EV~TP~l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~ 444 (883)
+||+||+||+|++++++||++|.++++ ..+.+|+|+||||+|||++|++|++|||||+||||+|+++++|||||||||+
T Consensus 173 ~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~ 252 (706)
T PRK12820 173 RGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDI 252 (706)
T ss_pred CCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccce
Confidence 999999999999999999999877765 3567788999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHhcc----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCC
Q psy8372 445 ELSFTTRDDVMRLIEELLCYCLNI----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRA 520 (883)
Q Consensus 445 e~~~~~~~dvm~~~E~li~~i~~~----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~ 520 (883)
||+|+|++|+|+++|+||+++++. ++.||+||||.|||++||+||||+||+++|.| +++.
T Consensus 253 E~af~d~~dvm~l~E~li~~v~~~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d-~~~~--------------- 316 (706)
T PRK12820 253 EASFIDEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFAD-ATDI--------------- 316 (706)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEE-HHHH---------------
Confidence 999999999999999999999952 56799999999999999999999999999999 8766
Q ss_pred CCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeecc
Q psy8372 521 GEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKN 600 (883)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (883)
|. +++| ..++.++ +++|.|+|
T Consensus 317 ------------~~-----------------------------~~~f--------~~f~~~~-----~~~g~v~~----- 337 (706)
T PRK12820 317 ------------FE-----------------------------NTRY--------GIFKQIL-----QRGGRIKG----- 337 (706)
T ss_pred ------------hc-----------------------------cCCc--------hhhhhhh-----ccCCeEEE-----
Confidence 33 2233 2333332 56788887
Q ss_pred ccccccCcccccCCCccceeeeecCCcc-ccchhhHHH-HH-HHHHHhcCCCcceEEEecCcccccccccccCChhhHHH
Q psy8372 601 VDNFRSNRSETKSSGEDVYRILILPKDL-DSTNKKITE-YK-NLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEE 677 (883)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (883)
|++|+++ .++++.++. |. ++++. ++.+++.|++++++ .+.++++|++++++.++
T Consensus 338 ---------------------i~~~~~~~~~s~~~~~~~~~~~~~~~-~g~~gl~~~~~~~~-~~~~~~~~~~~~~~~~~ 394 (706)
T PRK12820 338 ---------------------INIKGQSEKLSKNVLQNEYAKEIAPS-FGAKGMTWMRAEAG-GLDSNIVQFFSADEKEA 394 (706)
T ss_pred ---------------------EEeCCCccccCHHHHHHHHHHHHHHH-cCCCceEEEEECCC-CcCCchhccCCHHHHHH
Confidence 8899876 489999998 76 88875 68889999988655 48899999999999999
Q ss_pred HHHHcCCCCCcEEEEecCCc-hhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 678 FRNKENLEEGDLIVVSWGKQ-EDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 678 ~~~~~~~~~~d~i~~~~~~~-~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
|.+.+++++||+++|.+++. ..++++||+||.+++ +.+ ++.+++.|+|+||||||||+++++|+|.|+||||
T Consensus 395 l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~-----~~~--~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPF 467 (706)
T PRK12820 395 LKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLA-----DRL--GLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPF 467 (706)
T ss_pred HHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHH-----HHc--CCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCC
Confidence 99999999999999999865 568999999999999 555 7888889999999999999999999999999999
Q ss_pred CCCCCCChhhhcc-CCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcc
Q psy8372 757 TQPHPEDEHLLSS-NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 757 t~p~~~d~~~~~~-~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG 831 (883)
|||+++|++++.+ ||.++|+++||||+||+||||||+||||+++|+++|+.+|++++ .|+|||+||+||+|||||
T Consensus 468 T~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG 547 (706)
T PRK12820 468 TAPDREDFDPGDIEELLDLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGG 547 (706)
T ss_pred CCcCccChhhhccCChHHhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999985 99999999999999999999999999999999999999999875 489999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
||+|+|||||+|+|.+|||||||||||.+|.|||++||+.|+++||+||||+
T Consensus 548 ~a~G~dRlvm~l~~~~sirdviaFPK~~~g~dlm~~aPs~v~~~qL~el~i~ 599 (706)
T PRK12820 548 IALGLDRVVSMILQTPSIREVIAFPKNRSAACPLTGAPSEVAQEQLAELGLL 599 (706)
T ss_pred eeccHHHHHHHHcCCccHHHhcccCCCCCCCCcccCCCCcCCHHHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999985
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-121 Score=1062.17 Aligned_cols=479 Identities=41% Similarity=0.707 Sum_probs=436.6
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.++++++++++ .++|+.+. ....++++|++|||||||++.++++|++||+|++++|+|| .++||+||+||+|
T Consensus 89 g~iEl~~~~i~iL~~a-~~~P~~~~-~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff-~~~gFiEVeTP~L 165 (583)
T TIGR00459 89 GEIEILAESITLLNKS-KTPPLIIE-KTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFL-DQQGFLEIETPML 165 (583)
T ss_pred CcEEEEEeEEEEeecC-CCCCCccc-ccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCee
Confidence 4689999999999999 57888775 3457889999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 377 FKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 377 ~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
++++++||++|.++++ ..+.+|+|+||||+|||++|++|++||||||||||+|+++++|||||||||+||+|+|++|+|
T Consensus 166 ~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm 245 (583)
T TIGR00459 166 TKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVM 245 (583)
T ss_pred ccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHH
Confidence 9999999999999876 356778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRG 530 (883)
Q Consensus 456 ~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 530 (883)
+++|+||+++++. +++||+||||.|||++||+||||+||++++.| +++.
T Consensus 246 ~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d-~~~~------------------------- 299 (583)
T TIGR00459 246 ELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELID-VTDL------------------------- 299 (583)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCccccc-HHHh-------------------------
Confidence 9999999999974 56899999999999999999999999999999 7766
Q ss_pred CcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCccc
Q psy8372 531 PSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSE 610 (883)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (883)
|. +++| +.++..+ .++|.|+|
T Consensus 300 --~~-----------------------------~~~f--------~~~~~~~-----~~~~~v~~--------------- 320 (583)
T TIGR00459 300 --FK-----------------------------DSEF--------KVFSNLI-----NDGGRVKA--------------- 320 (583)
T ss_pred --hc-----------------------------cCCc--------chhhhhh-----ccCCeEEE---------------
Confidence 32 1222 2233222 45677776
Q ss_pred ccCCCccceeeeecCCc-cccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcE
Q psy8372 611 TKSSGEDVYRILILPKD-LDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDL 689 (883)
Q Consensus 611 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 689 (883)
|++|++ .+++++.+++|.++++. .+.+++.|+.++++. +.++++|+++++..++|.+.+++++||+
T Consensus 321 -----------i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~gd~ 387 (583)
T TIGR00459 321 -----------IRVPGGWAELSRKSIKELRKFAKE-YGAKGLAYLKVNEDG-INSPIKKFLDEKKGKILLERTDAQNGDI 387 (583)
T ss_pred -----------EEecCCcCccCHhHHHHHHHHHHH-cCCCcceEEEEcCCc-CCCchhhhcCHHHHHHHHHHhCCCCCCE
Confidence 889987 36899999999999985 577788899886553 5688999999999999999999999999
Q ss_pred EEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhcc
Q psy8372 690 IVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSS 769 (883)
Q Consensus 690 i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~ 769 (883)
+++.+++...++++||+||.+++ +.+ ++.+++.++|+||||||||+++|+|+|.|+|||||+|+++|+.++.+
T Consensus 388 ~~~~a~~~~~~~~~lG~lr~~l~-----~~~--~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~ 460 (583)
T TIGR00459 388 LLFGAGSKKIVLDALGALRLKLG-----KDL--GLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEA 460 (583)
T ss_pred EEEecCcchhHHHHHHHHHHHHH-----HHc--CCcCCCCceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhc
Confidence 99999988889999999999998 555 57778889999999999999997799999999999999999999999
Q ss_pred CCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHHhC
Q psy8372 770 NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSILCG 845 (883)
Q Consensus 770 ~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~ 845 (883)
||.++++++||||+||+||||||+|||||++|+++|+++|++++ .|++||+||+||||||||+|||||||||+|||
T Consensus 461 ~p~~~~~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~ 540 (583)
T TIGR00459 461 APEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTG 540 (583)
T ss_pred ChhhhhhheeeEEEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999876 39999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 846 TQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 846 ~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
.+|||||||||||.+|.|||++||+.|+++||+||||+
T Consensus 541 ~~sIRDVIaFPKt~~g~dlm~~aP~~v~~~qL~e~~i~ 578 (583)
T TIGR00459 541 TDNIRDVIAFPKTTAAACLMTEAPSFIDEKQLEELSIK 578 (583)
T ss_pred CCchhheeecCCCCCCcccccCCCCcCCHHHHHHhCCc
Confidence 99999999999999999999999999999999999985
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-120 Score=1062.11 Aligned_cols=480 Identities=42% Similarity=0.728 Sum_probs=440.4
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.++++++++++. ++|+.+.+....++++|++|||||+|++.+++++++||+|++++|+|| .++||+||+||+|
T Consensus 91 g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff-~~~gFiEV~TP~L 168 (588)
T PRK00476 91 GEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFL-DDNGFLEIETPIL 168 (588)
T ss_pred CcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCee
Confidence 46899999999999996 899988654557899999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 377 FKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 377 ~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
++++++||++|.++++ ..+.+|+|+||||+|||++|++|++||||||||||+|+++++|||||||||+||+|++++|+|
T Consensus 169 ~~s~~ega~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm 248 (588)
T PRK00476 169 TKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVM 248 (588)
T ss_pred ecCCCCCCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHH
Confidence 9999999999999876 567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRG 530 (883)
Q Consensus 456 ~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 530 (883)
+++|+||+++++. +++||+||||.|||++||+||||+||+++|.| +++.
T Consensus 249 ~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~D-VT~i------------------------- 302 (588)
T PRK00476 249 ALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVD-VTDL------------------------- 302 (588)
T ss_pred HHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehh-HHHH-------------------------
Confidence 9999999999974 56899999999999999999999999999999 8877
Q ss_pred CcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCccc
Q psy8372 531 PSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSE 610 (883)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (883)
|. ++++ ..++.++ +.+|.|+|
T Consensus 303 --f~-----------------------------~s~f--------~vf~~~l-----~~gg~Vka--------------- 323 (588)
T PRK00476 303 --FK-----------------------------DSGF--------KVFAGAA-----NDGGRVKA--------------- 323 (588)
T ss_pred --hc-----------------------------cCCc--------hhhhhhh-----ccCCeEEE---------------
Confidence 32 2223 2232222 35677776
Q ss_pred ccCCCccceeeeecCCccccc-hhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcE
Q psy8372 611 TKSSGEDVYRILILPKDLDST-NKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDL 689 (883)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 689 (883)
|++|+.+.++ ++.++++.++++. ++.+++.|++..++. |.+++++++++++.++|.+.+++++||+
T Consensus 324 -----------I~vp~~~~~~~rk~id~L~e~AK~-~gakGL~~i~~~~~~-l~~~~akflsee~~~~L~e~l~~k~GDl 390 (588)
T PRK00476 324 -----------IRVPGGAAQLSRKQIDELTEFAKI-YGAKGLAYIKVNEDG-LKGPIAKFLSEEELAALLERTGAKDGDL 390 (588)
T ss_pred -----------EEecCCCCccchhHHHHHHHHHHH-cCCCceEEEEEcCCC-CcCchhhcCCHHHHHHHHHHhCCCCCCE
Confidence 8899776666 9999999999994 688889999876553 7889999999999999999999999999
Q ss_pred EEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCChhhhc
Q psy8372 690 IVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPEDEHLLS 768 (883)
Q Consensus 690 i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d~~~~~ 768 (883)
+++++++.+.++++||+||.+++ +.+ ++.+++.|+|+||||||||+++|+ |+|.|+|||||||+++|++++.
T Consensus 391 l~~~A~~~~~v~~aLG~LR~~L~-----~~~--~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~ 463 (588)
T PRK00476 391 IFFGADKAKVVNDALGALRLKLG-----KEL--GLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELE 463 (588)
T ss_pred EEEECCchHHHHHHHHHHHHHHH-----HHc--CCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhh
Confidence 99999988889999999999999 555 677778899999999999999997 9999999999999999999999
Q ss_pred c-CCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHH
Q psy8372 769 S-NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSIL 843 (883)
Q Consensus 769 ~-~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l 843 (883)
+ ||.+++|++||||+||+||||||+||||+++|+++|+.+|++++ .|+|||+||+||+|||||||||||||||+|
T Consensus 464 ~~~p~~~~a~~~dlv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~ 543 (588)
T PRK00476 464 TTDPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLL 543 (588)
T ss_pred cCCHHHhhhheeeeEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999887 599999999999999999999999999999
Q ss_pred hCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 844 CGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 844 ~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
+|.+||||||||||+.+|+|||++||+.|+++||+||||+
T Consensus 544 ~~~~~irdvi~fp~~~~g~d~~~~aP~~v~~~ql~~~~~~ 583 (588)
T PRK00476 544 AGADSIRDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGIR 583 (588)
T ss_pred cCCccHHheeeccCCCCccccccCCCCcCCHHHHHhcCcc
Confidence 9999999999999999999999999999999999999985
|
|
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-117 Score=958.87 Aligned_cols=484 Identities=46% Similarity=0.800 Sum_probs=413.2
Q ss_pred cccceEEEEeeeeeecccCCCCCccccccC----ccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy8372 295 GLLSKEVIASNITVLNKADVNIPFHIKNYN----KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVE 370 (883)
Q Consensus 295 ~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~----~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~E 370 (883)
..+.+|+.+++++++|++.+.+|+.+.+.. ...+.+||++||||||++.++.++++||.+...||+||.+..||+|
T Consensus 121 ~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFve 200 (628)
T KOG2411|consen 121 KTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFVE 200 (628)
T ss_pred cccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCeee
Confidence 345688999999999999889999987654 4678999999999999999999999999999999999988788999
Q ss_pred EcCCeeccCCCCCCccceeccCCC-CceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 371 VETPTLFKRTPGGAREFVVPTHEP-NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 371 V~TP~l~~~~~~ga~~f~v~~~~~-~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
|+||+|.+.+||||++|.||++.+ |++|.|+||||+|||+||++|++||||||+|||+|+++.+|+|||||+|+||+|+
T Consensus 201 vETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~ 280 (628)
T KOG2411|consen 201 VETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFT 280 (628)
T ss_pred ccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEecc
Confidence 999999999999999999999966 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPG 524 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 524 (883)
+.+|+|+++|++|.++|.. +..||+||||+|||++||+||||+||+++|.| +++..+|.
T Consensus 281 ~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~d-v~~~~~~~--------------- 344 (628)
T KOG2411|consen 281 DQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKD-VSESISKS--------------- 344 (628)
T ss_pred CHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecc-hHHhhhhh---------------
Confidence 9999999999999999987 56799999999999999999999999999999 77663221
Q ss_pred CCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeecccccc
Q psy8372 525 FDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNF 604 (883)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (883)
|. +..+ +.+..++.
T Consensus 345 --------~~----------------------------------------~~~~--------~d~l~~~~---------- 358 (628)
T KOG2411|consen 345 --------FE----------------------------------------EALL--------SDGLISVE---------- 358 (628)
T ss_pred --------hh----------------------------------------hhhh--------cCCccceE----------
Confidence 00 0000 00000000
Q ss_pred ccCcccccCCCccceeeeecCCcccc--ch-hhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHH
Q psy8372 605 RSNRSETKSSGEDVYRILILPKDLDS--TN-KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681 (883)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (883)
+++-.+... ++ +..+.++.+.+.+++...+. +.......|.+++.++..+....++.+.
T Consensus 359 -----------------~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~-~~~~~~~~w~~~~~~l~~e~~~~el~~~ 420 (628)
T KOG2411|consen 359 -----------------IVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFP-IEHDANKNWFKKFSSLTDEAVAIELIKQ 420 (628)
T ss_pred -----------------EEEeccccccchhhHHhHHHHHHhhcccccceee-eeccchhhhhhhchhhccchHHHHHHHH
Confidence 111111111 11 22233333333323222222 2222223599999888666677899999
Q ss_pred cCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-C-CccccccCcCCC
Q psy8372 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-G-TLESAHHPFTQP 759 (883)
Q Consensus 682 ~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~-~~~~~h~PFt~p 759 (883)
+++++||+|++..|.+..+.+.||++|..+. ..+..++.+++.+.|+||+|||||++.+| + +++|+|||||+|
T Consensus 421 ~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~-----~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP 495 (628)
T KOG2411|consen 421 LGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQ-----DLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAP 495 (628)
T ss_pred hCCCCCCEEEEeccCCccCCCchHHHHHHHH-----HHHhccccccccceEEEEEeccccCccccCCceeccccCCCCCC
Confidence 9999999999999998889999999998887 66666788999999999999999996666 5 899999999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH-hCCCCccc--HHHHHHHhhcCCCCCcceeccH
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSS--LQHMIQAFKYGCPPHGGIALGI 836 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~-~~~~~~~~--~~~~l~a~~~G~pPhgG~glGl 836 (883)
+++|++.+++.|.++|+++||||+||+||||||+||||+++|+.+|+ .++++.+. ++|+|+||.+|||||||||+|+
T Consensus 496 ~~~Di~~L~s~p~~~rgqhYDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGl 575 (628)
T KOG2411|consen 496 HPKDIDLLESAPEKIRGQHYDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGL 575 (628)
T ss_pred ChhhhhHhhcCchhhhcceeeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecH
Confidence 99999999999999999999999999999999999999999999996 67776654 4699999999999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 837 DRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 837 dRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
|||+|+|||+.||||||||||+.+|+|+|++||+.|+++||+.|||+
T Consensus 576 DRlvaml~~a~sIRDVIAFPKt~~G~Dlls~sPs~ip~e~L~~Y~I~ 622 (628)
T KOG2411|consen 576 DRLVAMLTGAPSIRDVIAFPKTTTGADLLSNSPSEIPEEQLEDYNIR 622 (628)
T ss_pred HHHHHHHcCCCchheeeeccccCCccccccCCCCCCCHHHhhhccee
Confidence 99999999999999999999999999999999999999999999984
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=647.97 Aligned_cols=322 Identities=33% Similarity=0.550 Sum_probs=269.2
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.+++++|++.+..++|++.+.+. +.++++++||||+|++..++++++|+.|++++|+|| .++||+||+||+|
T Consensus 85 ~g~El~v~~i~Vl~~a~~~~Pi~~~~~~--~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff-~~~gF~eV~tP~i 161 (435)
T COG0017 85 QGFELQVEKIEVLGEADPPYPIDKKEHS--ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFF-YENGFTEVHTPII 161 (435)
T ss_pred CCEEEEEEEEEEeeccCCCCCcCccccc--CHHHHHhchheeccccchHHHHhHHHHHHHHHHHHH-HhCCcEEecCceE
Confidence 4688999999999999546777765433 689999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCC-ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA-REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga-~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dv 454 (883)
++++++|+ ..|++.|+ +..+||+||||||||+++++ ++|||+|||+||+|+++|+|| +||||+|.||+|++++|+
T Consensus 162 ~~~~~EGg~elF~v~yf--~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~ 238 (435)
T COG0017 162 TASATEGGGELFKVDYF--DKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDV 238 (435)
T ss_pred eccCCCCCceeEEEeec--CcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceeccCcHHHH
Confidence 99876555 56999987 56689999999999986655 999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------------C-CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------------P-TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGY 512 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------------~-~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~ 512 (883)
|+++|+||+++++. + +.||+||||.||++.+....
T Consensus 239 m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~----------------------- 295 (435)
T COG0017 239 MDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKG----------------------- 295 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhcC-----------------------
Confidence 99999999999865 1 24677777777777743210
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccce
Q psy8372 513 PTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRT 592 (883)
Q Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (883)
+.
T Consensus 296 --------------------~e---------------------------------------------------------- 297 (435)
T COG0017 296 --------------------FE---------------------------------------------------------- 297 (435)
T ss_pred --------------------Cc----------------------------------------------------------
Confidence 00
Q ss_pred eEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCCh
Q psy8372 593 TVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672 (883)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (883)
. -+|..++
T Consensus 298 --------------------------------------------------------~----------~~~GdDl------ 305 (435)
T COG0017 298 --------------------------------------------------------K----------VEWGDDL------ 305 (435)
T ss_pred --------------------------------------------------------c----------cCCCCcc------
Confidence 0 0011110
Q ss_pred hhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccc
Q psy8372 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESA 752 (883)
Q Consensus 673 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~ 752 (883)
....++.||+ .... .|+||||||..
T Consensus 306 ------------------------~~e~Er~l~e----------------~~~~----~~vfv~~yP~~----------- 330 (435)
T COG0017 306 ------------------------GTEHERYLGE----------------EYFK----PPVFVTNYPKE----------- 330 (435)
T ss_pred ------------------------CCHHHHHHHH----------------HhCC----CcEEEEeCccc-----------
Confidence 1123444552 1111 25999999997
Q ss_pred ccCcC-CCCCCChhhhccCCCCccceeeEEEecC-eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCc
Q psy8372 753 HHPFT-QPHPEDEHLLSSNPLEVRGLHYDLVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHG 830 (883)
Q Consensus 753 h~PFt-~p~~~d~~~~~~~~~~~~~~~~Dlv~~G-~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhg 830 (883)
.+||+ +++++++.+ +.+|||+++| .||.|||||+||++.+.++++.+|+++++|+|||+++|||+||||
T Consensus 331 ~kpFYm~~~~d~p~~---------~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHa 401 (435)
T COG0017 331 IKPFYMRPDPDNPGT---------VASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHA 401 (435)
T ss_pred ccccccccCCCCCCe---------EEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCc
Confidence 89995 555655454 3899999999 899999999999999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 831 G~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||||+|||+|++||++||||||+|||+.+-
T Consensus 402 GfGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 402 GFGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred ccccCHHHHHHHHhCCCcceeccccCCCCCC
Confidence 9999999999999999999999999998653
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-73 Score=656.23 Aligned_cols=341 Identities=30% Similarity=0.468 Sum_probs=276.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|+... +..+.++|+++|||||| ++.++++|++||+|++++|+|| .++||+||+||+|
T Consensus 123 e~el~~~~~~vls~~~~plP~~~~--~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~-~~~gF~EVeTPiL 199 (491)
T PRK00484 123 ELSVKATELTLLTKSLRPLPDKFH--GLTDVETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFL-DNRGFLEVETPML 199 (491)
T ss_pred cEEEEEeEEEEEeccCCCCCcccc--cccchhhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCce
Confidence 478999999999999888887653 45678999999999998 6999999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+ ++++|| ++|.++++..+..+||+||||+|+|++|++|++||||||||||||+++++|+|||||||+|++|+|++|+
T Consensus 200 ~-~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~ 278 (491)
T PRK00484 200 Q-PIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDM 278 (491)
T ss_pred e-ccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHH
Confidence 6 457776 5798776656788899999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||++++.. ++.||+||||.||++++....+. +
T Consensus 279 m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~~pf~rity~eai~~~~g~~~~--------~------------------- 331 (491)
T PRK00484 279 MDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFD--------D------------------- 331 (491)
T ss_pred HHHHHHHHHHHHHHHhCCceEecCCEeecCCCCceEEEHHHHHHHHhCCCcc--------c-------------------
Confidence 99999999999764 34699999999999986421000 0
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
.
T Consensus 332 -------------~------------------------------------------------------------------ 332 (491)
T PRK00484 332 -------------M------------------------------------------------------------------ 332 (491)
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
..+++.+++++
T Consensus 333 ----------------------------------~~~~~~~~~~~----------------------------------- 343 (491)
T PRK00484 333 ----------------------------------TDEEARALAKE----------------------------------- 343 (491)
T ss_pred ----------------------------------CHHHHHHHHHH-----------------------------------
Confidence 00011111111
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
++++.. ..+..|.+..+++ ++.++..+.+| +||+|||.. ..||+++
T Consensus 344 --~~~~~~------------~~~~~~~l~~~l~----~~~ve~~~~~P-----~Fi~dyP~~-----------~~pf~k~ 389 (491)
T PRK00484 344 --LGIEVE------------KSWGLGKLINELF----EEFVEPKLIQP-----TFITDYPVE-----------ISPLAKR 389 (491)
T ss_pred --cCCCCC------------CCCCHHHHHHHHH----HHHhhhhcCCc-----EEEECCChH-----------Hhhhhcc
Confidence 111100 0112344444444 24445556555 899999987 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCcc-cH-HHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETS-SL-QHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~-~~-~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||+++|+||+||++|+|||++|+++|+. .|.++. .+ +|||+|++||||||||
T Consensus 390 ~~~~~~~---------~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG 460 (491)
T PRK00484 390 HREDPGL---------TERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGG 460 (491)
T ss_pred CCCCCCe---------EEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCe
Confidence 8887765 48999999999999999999999999999953 243333 23 6999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||+|+|+|++||||||+||+++.
T Consensus 461 ~GiGiDRLvm~ltg~~~Irdvi~FP~~~~ 489 (491)
T PRK00484 461 LGIGIDRLVMLLTDSPSIRDVILFPLMRP 489 (491)
T ss_pred EEEeHHHHHHHHhCCCcHHhcccCCCCCC
Confidence 99999999999999999999999999875
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=642.77 Aligned_cols=326 Identities=35% Similarity=0.620 Sum_probs=271.3
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+.+.+....+.++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|+
T Consensus 86 ~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff-~~~gf~EV~TP~L~ 164 (437)
T PRK05159 86 GVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFL-YENGFTEIFTPKIV 164 (437)
T ss_pred CEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCccc
Confidence 57899999999999987899877654455689999999999999999999999999999999999 68999999999998
Q ss_pred cCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHH
Q psy8372 378 KRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDV 454 (883)
Q Consensus 378 ~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dv 454 (883)
.+++ +|+..|++.++ ++.+||+||||+|||+++++|++|||||+||||||+++++|| |||||||+||+|.| ++++
T Consensus 165 ~~~~eg~~~~f~~~~~--~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~l 242 (437)
T PRK05159 165 ASGTEGGAELFPIDYF--EKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDV 242 (437)
T ss_pred ccCCCCCcceEeEEec--CCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHH
Confidence 7665 55666888764 688999999999999999999999999999999999998665 99999999999998 9999
Q ss_pred HHHHHHHHHHHhcc------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRL 516 (883)
Q Consensus 455 m~~~E~li~~i~~~------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~ 516 (883)
|+++|+||+++++. ++.||+||||.||++.+.... + .
T Consensus 243 m~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~------------~--~----------- 297 (437)
T PRK05159 243 MDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKG------------N--E----------- 297 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcC------------C--C-----------
Confidence 99999999998853 236888888888888753210 0 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEe
Q psy8372 517 PRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLF 596 (883)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (883)
+. | +.++
T Consensus 298 ----------------~~------~----------------------~~~~----------------------------- 304 (437)
T PRK05159 298 ----------------IS------W----------------------GDDL----------------------------- 304 (437)
T ss_pred ----------------CC------C----------------------CCCC-----------------------------
Confidence 00 0 0000
Q ss_pred eeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHH
Q psy8372 597 QIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVE 676 (883)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (883)
+
T Consensus 305 ----------------------------------~--------------------------------------------- 305 (437)
T PRK05159 305 ----------------------------------D--------------------------------------------- 305 (437)
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 677 EFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 677 ~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
......|+.+.. +.+.. .++||+|||.. ..||
T Consensus 306 ---------------------~~~e~~l~~~~~------------~~~~~----~p~fi~~~P~~-----------~~pf 337 (437)
T PRK05159 306 ---------------------TEGERLLGEYVK------------EEYGS----DFYFITDYPSE-----------KRPF 337 (437)
T ss_pred ---------------------cHHHHHHHHHHh------------hhcCC----ceEEEecCchh-----------cCcc
Confidence 001122332211 11211 26999999987 6899
Q ss_pred -CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceecc
Q psy8372 757 -TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALG 835 (883)
Q Consensus 757 -t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glG 835 (883)
++++++++.+ +++|||+++|+||+|||+|+||+++|+++|+..|++++.++|||+|++||+|||||||||
T Consensus 338 y~~~~~~~~~~---------~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giG 408 (437)
T PRK05159 338 YTMPDEDDPEI---------SKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLG 408 (437)
T ss_pred eeeecCCCCCE---------EEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEh
Confidence 6677777654 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCCC
Q psy8372 836 IDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 836 ldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||+|+++|++|||||++|||+.+
T Consensus 409 idRl~m~~~g~~~Irdv~~FPr~~~ 433 (437)
T PRK05159 409 LERLTMKLLGLENIREAVLFPRDRH 433 (437)
T ss_pred HHHHHHHHcCCCchhEEeeccCCCC
Confidence 9999999999999999999999864
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-72 Score=636.50 Aligned_cols=321 Identities=33% Similarity=0.597 Sum_probs=270.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++|+.++++++++++..++|+.+++....+.++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|+
T Consensus 83 ~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff-~~~gf~EV~TP~L~ 161 (428)
T TIGR00458 83 GFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFL-AEEGFIEVHTPKLV 161 (428)
T ss_pred cEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCcee
Confidence 37899999999999988899988766667889999999999999999999999999999999999 68999999999998
Q ss_pred cCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHH
Q psy8372 378 KRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 378 ~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm 455 (883)
++.+ +|+..|++.++ +..+||+||||+|||+++++|++||||||||||||+++++|| |||||||+||+|.|++|+|
T Consensus 162 ~~~~eg~~~~f~v~~~--~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm 239 (428)
T TIGR00458 162 ASATEGGTELFPITYF--EREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVM 239 (428)
T ss_pred cCCCCCCcceeeeEec--CCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHH
Confidence 7765 45566888765 577899999999999999999999999999999999998666 9999999999999999999
Q ss_pred HHHHHHHHHHhcc------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLP 517 (883)
Q Consensus 456 ~~~E~li~~i~~~------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~ 517 (883)
+++|+||++++.. .+.||+||||.||++.+.... + .
T Consensus 240 ~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g------------~--~------------ 293 (428)
T TIGR00458 240 DILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANAKG------------V--E------------ 293 (428)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHHcC------------C--C------------
Confidence 9999999999853 134788888888876531100 0 0
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEee
Q psy8372 518 RRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQ 597 (883)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (883)
+. |
T Consensus 294 ---------------~~------~-------------------------------------------------------- 296 (428)
T TIGR00458 294 ---------------IG------W-------------------------------------------------------- 296 (428)
T ss_pred ---------------CC------C--------------------------------------------------------
Confidence 00 0
Q ss_pred eccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHH
Q psy8372 598 IKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEE 677 (883)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (883)
|.++
T Consensus 297 -----------------~~~l----------------------------------------------------------- 300 (428)
T TIGR00458 297 -----------------GEDL----------------------------------------------------------- 300 (428)
T ss_pred -----------------cccc-----------------------------------------------------------
Confidence 0000
Q ss_pred HHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-
Q psy8372 678 FRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF- 756 (883)
Q Consensus 678 ~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF- 756 (883)
....++.||+ .+..| +||+|||.. ..||
T Consensus 301 -------------------~~~~E~~l~~----------------~~~~p-----~fi~d~P~~-----------~~pfy 329 (428)
T TIGR00458 301 -------------------STEAEKALGE----------------EMDGL-----YFITDWPTE-----------IRPFY 329 (428)
T ss_pred -------------------chHHHHHHHH----------------HhCCC-----EEEEeCchh-----------cCccc
Confidence 0011223331 12233 899999987 7899
Q ss_pred CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccH
Q psy8372 757 TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGI 836 (883)
Q Consensus 757 t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGl 836 (883)
++++++|+.+ +++|||+++|.||+||++|+||++.|+++++..|++++.++|||+|++|||||||||||||
T Consensus 330 ~~~~~~~p~~---------~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGi 400 (428)
T TIGR00458 330 TMPDEDNPEI---------SKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGA 400 (428)
T ss_pred ccccCCCCCE---------EEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecH
Confidence 5787777655 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCCC
Q psy8372 837 DRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 837 dRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||+|+++|++|||||++|||+.+
T Consensus 401 dRL~m~l~g~~~Irdv~~FPr~~~ 424 (428)
T TIGR00458 401 ERFVMFLLGLKNIREAVLFPRDRK 424 (428)
T ss_pred HHHHHHHcCCCchheEEeccCCCC
Confidence 999999999999999999999864
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=628.71 Aligned_cols=345 Identities=28% Similarity=0.418 Sum_probs=276.8
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|... ++..+.++|+++||||+| ++..+++|++||.|+++||+|| +++||+||+||+|
T Consensus 180 elel~~~~i~vLs~~l~plP~k~--~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl-~~~gF~EVeTPiL 256 (553)
T PLN02502 180 ELSIFPTSFEVLTKCLLMLPDKY--HGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFL-DDRGFLEVETPML 256 (553)
T ss_pred CEEEEEeEEEEEeccCCCCCccc--ccccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCee
Confidence 46899999999999987888643 345789999999999996 7999999999999999999999 6899999999999
Q ss_pred ccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+. ++|||. +|.+.++..+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+|++|+
T Consensus 257 ~~-~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dl 335 (553)
T PLN02502 257 NM-IAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDM 335 (553)
T ss_pred ec-cCCCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHH
Confidence 75 466764 688766666888999999999999989999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCC-CCCCccccchhhhhhcCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGS-DKPDLRYDCKIMIAIKEQPPWPSGYPTRLPR 518 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~-~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~ 518 (883)
|+++|+||++++.. +..||+|+||.||++.+.. +.+. +
T Consensus 336 m~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~--------~------------------ 389 (553)
T PLN02502 336 MELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA--------D------------------ 389 (553)
T ss_pred HHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc--------C------------------
Confidence 99999999999853 3468999999999888632 2110 0
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeee
Q psy8372 519 RAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQI 598 (883)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (883)
..
T Consensus 390 --------------~~---------------------------------------------------------------- 391 (553)
T PLN02502 390 --------------LK---------------------------------------------------------------- 391 (553)
T ss_pred --------------CC----------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHH
Q psy8372 599 KNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEF 678 (883)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (883)
.....+.|.+++++
T Consensus 392 --------------------------------~~~~~~~l~~~~~~---------------------------------- 405 (553)
T PLN02502 392 --------------------------------SDEANAYLIAACEK---------------------------------- 405 (553)
T ss_pred --------------------------------HHHHHHHHHHHHHH----------------------------------
Confidence 00001112222221
Q ss_pred HHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCC
Q psy8372 679 RNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQ 758 (883)
Q Consensus 679 ~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~ 758 (883)
.+++.. ....+|.+..+++ ++.+++.+.+| +||+|||.. ..||++
T Consensus 406 ---~~~~~~------------~~~~~~~~l~~l~----~~~ve~~l~~P-----tFV~dyP~~-----------~splak 450 (553)
T PLN02502 406 ---FDVKCP------------PPQTTGRLLNELF----EEFLEETLVQP-----TFVLDHPVE-----------MSPLAK 450 (553)
T ss_pred ---cCCCCC------------CCCCHhHHHHHHH----HHHHHhhcCCC-----EEEECCccc-----------cCcccc
Confidence 111110 0112455555544 35566667666 899999987 799999
Q ss_pred CCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh----CCCC-cc---cHHHHHHHhhcCCCCCc
Q psy8372 759 PHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF----LNIE-TS---SLQHMIQAFKYGCPPHG 830 (883)
Q Consensus 759 p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~----~~~~-~~---~~~~~l~a~~~G~pPhg 830 (883)
++++|+.+ +++|||+++|+||+||++|+|||.+|+++|+. .+.. .+ -.++||+|++|||||||
T Consensus 451 ~~~~~p~~---------~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~g 521 (553)
T PLN02502 451 PHRSKPGL---------TERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTG 521 (553)
T ss_pred cCCCCCCe---------EEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCc
Confidence 99988776 49999999999999999999999999999933 2221 11 24779999999999999
Q ss_pred ceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 831 G~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||||||||+|+|||++||||||+||..+.
T Consensus 522 G~GiGiDRLvMlltg~~sIrdVi~FP~~k~ 551 (553)
T PLN02502 522 GWGLGIDRLVMLLTDSASIRDVIAFPAMKP 551 (553)
T ss_pred eEEehHHHHHHHHcCCcchheeecCCcCCC
Confidence 999999999999999999999999998864
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=626.78 Aligned_cols=350 Identities=29% Similarity=0.480 Sum_probs=284.2
Q ss_pred ccccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy8372 294 WGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~ 372 (883)
...+++||.++++++++++..++|... ++.++.++|+++||||+| ++..+++|++||.|++++|+|| .++||+||+
T Consensus 119 t~~gelel~~~~i~ilsk~~~plP~k~--~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl-~~~gF~EVe 195 (496)
T TIGR00499 119 TKTGELSVHVTELQILTKALRPLPDKF--HGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFL-DDRGFIEVE 195 (496)
T ss_pred CCCCcEEEEeeEEEEEecCCCCCCccc--cccCChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCcCEEEe
Confidence 335679999999999999988888654 345688999999999999 5899999999999999999999 689999999
Q ss_pred CCeeccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 373 TPTLFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 373 TP~l~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
||+|++ .+||| ++|.++++..+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+|
T Consensus 196 TP~L~~-~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 196 TPMLQV-IPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYAD 274 (496)
T ss_pred CCeeec-CCCCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhhhcCC
Confidence 999964 46776 569988766678899999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTR 515 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~ 515 (883)
++|+|+++|+||++++.. ++.||+||||.||++.|+... ..
T Consensus 275 ~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~~pf~rit~~eai~~~~~~~--------------g~---------- 330 (496)
T TIGR00499 275 YEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKYDMET--------------GI---------- 330 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHHHhc--------------CC----------
Confidence 999999999999998654 346999999999999765310 00
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEE
Q psy8372 516 LPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVL 595 (883)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (883)
.+. ++
T Consensus 331 ----------------~~~-------------------------------~~---------------------------- 335 (496)
T TIGR00499 331 ----------------DFD-------------------------------DL---------------------------- 335 (496)
T ss_pred ----------------Cch-------------------------------hc----------------------------
Confidence 000 00
Q ss_pred eeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhH
Q psy8372 596 FQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNV 675 (883)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (883)
...+++.+++++
T Consensus 336 -------------------------------------~~~~~l~~~~~~------------------------------- 347 (496)
T TIGR00499 336 -------------------------------------KDFETAKALAKK------------------------------- 347 (496)
T ss_pred -------------------------------------CCHHHHHHHHHH-------------------------------
Confidence 001222223322
Q ss_pred HHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccC
Q psy8372 676 EEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHP 755 (883)
Q Consensus 676 ~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~P 755 (883)
.+++.. .....+|++..+++ ++.+++.+.+| +||+|||.. ..|
T Consensus 348 ------~~~~~~-----------~~~~~~~~~l~~~~----~~~ve~~l~~P-----~fv~dyP~~-----------~sp 390 (496)
T TIGR00499 348 ------IGIEVA-----------EKSLTLGHILNELF----EQFLEHTLIQP-----TFITHYPAE-----------ISP 390 (496)
T ss_pred ------cCCCcC-----------CCCCCHHHHHHHHH----HHHHHhccCCC-----EEEECCchh-----------cCc
Confidence 111100 00013455555555 35556666655 899999997 799
Q ss_pred cCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH------hCCCCcccH--HHHHHHhhcCCC
Q psy8372 756 FTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH------FLNIETSSL--QHMIQAFKYGCP 827 (883)
Q Consensus 756 Ft~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~------~~~~~~~~~--~~~l~a~~~G~p 827 (883)
|++++++|+.+ +++|||+++|+||+||++|+|||++|+++|+ ..|.+++.+ +|||+|++||||
T Consensus 391 lak~~~~~p~~---------~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~P 461 (496)
T TIGR00499 391 LAKRNPSNPEF---------TDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMP 461 (496)
T ss_pred ccccCCCCCCe---------EEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCC
Confidence 99998887765 4899999999999999999999999999984 356776654 899999999999
Q ss_pred CCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||||+|+|||++||||||+||++++
T Consensus 462 P~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 462 PTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 999999999999999999999999999999875
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=622.23 Aligned_cols=347 Identities=24% Similarity=0.432 Sum_probs=282.1
Q ss_pred ccccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy8372 294 WGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~ 372 (883)
...+++||.++++++++++..++|..+. +.++.++|+++||||+| ++..+++|++||+|++++|+|| +++||+||+
T Consensus 131 t~~gelel~~~~~~llsk~~~plP~~~~--~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~-~~~gFiEVe 207 (505)
T PRK12445 131 TQTGELSIHCTELRLLTKALRPLPDKFH--GLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVE 207 (505)
T ss_pred cCCCcEEEEEeEEEEEecCCCCCCcccc--cccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEee
Confidence 3357899999999999999888887653 44689999999999999 5899999999999999999999 689999999
Q ss_pred CCeeccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 373 TPTLFKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 373 TP~l~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
||+|. +++|||. +|.++++..+..+||+||||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+|
T Consensus 208 TPiL~-~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 286 (505)
T PRK12445 208 TPMMQ-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 286 (505)
T ss_pred CCeeE-ecCCCCcccceecccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeeeecCC
Confidence 99996 4578875 68776666678889999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTR 515 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~ 515 (883)
++|+|+++|+||++++.. +++||+||||.||++.|+.. . + +...
T Consensus 287 ~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~~~-~---------~-~~~~---------- 345 (505)
T PRK12445 287 YHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-T---------D-MADL---------- 345 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHhCC-C---------C-cccc----------
Confidence 999999999999998653 24699999999999997531 0 0 0000
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEE
Q psy8372 516 LPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVL 595 (883)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (883)
T Consensus 346 -------------------------------------------------------------------------------- 345 (505)
T PRK12445 346 -------------------------------------------------------------------------------- 345 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhH
Q psy8372 596 FQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNV 675 (883)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (883)
...+++.+++++
T Consensus 346 -------------------------------------~~~~~~~~~~~~------------------------------- 357 (505)
T PRK12445 346 -------------------------------------DNFDAAKALAES------------------------------- 357 (505)
T ss_pred -------------------------------------CCHHHHHHHHHH-------------------------------
Confidence 011222233332
Q ss_pred HHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccC
Q psy8372 676 EEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHP 755 (883)
Q Consensus 676 ~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~P 755 (883)
.+++.. ....+|++..+++ +..+|+.+.+| +||+|||.. ..|
T Consensus 358 ------~~~~~~------------~~~~~~~l~~~~~----~~~vE~~l~~P-----~Fv~dyP~~-----------~sp 399 (505)
T PRK12445 358 ------IGITVE------------KSWGLGRIVTEIF----DEVAEAHLIQP-----TFITEYPAE-----------VSP 399 (505)
T ss_pred ------cCCCCC------------CCCCHHHHHHHHH----HHHHHhhcCCC-----EEEECCCch-----------hCc
Confidence 111100 0012344555444 34445556655 899999987 799
Q ss_pred cCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCcccH--HHHHHHhhcCCC
Q psy8372 756 FTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSSL--QHMIQAFKYGCP 827 (883)
Q Consensus 756 Ft~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~~--~~~l~a~~~G~p 827 (883)
|++++++|+.+ +++|||+++|.||+||++|+|||++|+++|+. .|.+++.. +|||+|++||||
T Consensus 400 lak~~~~~p~~---------~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~P 470 (505)
T PRK12445 400 LARRNDVNPEI---------TDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 470 (505)
T ss_pred ccccCCCCCCc---------eEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCC
Confidence 99988887665 48999999999999999999999999999953 36655543 799999999999
Q ss_pred CCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||||+|+|||++||||||+||+++.
T Consensus 471 P~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 471 PTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred CCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999875
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=618.12 Aligned_cols=369 Identities=25% Similarity=0.465 Sum_probs=279.4
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccC--------ccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhc
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYN--------KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLAT 364 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~--------~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~ 364 (883)
+...+++||.++++++++++..++|+.+++.. ..+.++||+|||||||++..+++|++||.|++++|+|| .
T Consensus 150 ~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~~~~R~fl-~ 228 (550)
T PTZ00401 150 STSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFL-I 228 (550)
T ss_pred CCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45667899999999999999888999886531 24689999999999999999999999999999999999 6
Q ss_pred CCCeEEEcCCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecc
Q psy8372 365 HRDFVEVETPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQL 442 (883)
Q Consensus 365 ~~gF~EV~TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~l 442 (883)
++||+||+||+|+.+. ++|++.|.++|+ +..+||+||||+|||+++++|++||||||||||+|+++|+|| ||||||
T Consensus 229 ~~gFiEV~TP~L~~~~~egga~~F~v~yf--~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~L 306 (550)
T PTZ00401 229 DSDFCEIHSPKIINAPSEGGANVFKLEYF--NRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGL 306 (550)
T ss_pred HCCCEEEeCCccccCCCCccccccccccC--CCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhh
Confidence 8999999999998875 568888999876 688999999999999998899999999999999999998777 999999
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHhccCCC------------Cceee--ehHHHHHH-hCCCCCCccccchhhhhhcCCC
Q psy8372 443 DIELSFT-TRDDVMRLIEELLCYCLNIPTR------------TFSRI--SYNDAISL-YGSDKPDLRYDCKIMIAIKEQP 506 (883)
Q Consensus 443 e~e~~~~-~~~dvm~~~E~li~~i~~~~~~------------~f~ri--ty~ea~~~-yg~~~~d~r~~~~~~~~~~~~~ 506 (883)
|+||+|. +++++|+++|+||.+++..+.. ||..+ ++.+++.+ .|.+... ..
T Consensus 307 e~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~------------~~- 373 (550)
T PTZ00401 307 DVEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVIS------------EG- 373 (550)
T ss_pred hhhhHhcCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCccc------------cc-
Confidence 9999986 6999999999999999865322 22222 22222222 1221100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhh
Q psy8372 507 PWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEIC 586 (883)
Q Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (883)
.. |. ..+....
T Consensus 374 --------------------------~~-------------------------~~--------------~~l~~~~---- 384 (550)
T PTZ00401 374 --------------------------VE-------------------------PT--------------DKYQARV---- 384 (550)
T ss_pred --------------------------cc-------------------------ch--------------HHHHHHH----
Confidence 00 00 0000000
Q ss_pred ccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccc
Q psy8372 587 SRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL 666 (883)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (883)
.+ .+. .+.+....+..+++++.++..
T Consensus 385 ~~-------------------------~~~------------~~~rl~y~eai~lL~~~~~~~----------------- 410 (550)
T PTZ00401 385 HN-------------------------MDS------------RMLRINYMHCIELLNTVLEEK----------------- 410 (550)
T ss_pred Hh-------------------------cCC------------CcccccHHHHHHHHHHhcccC-----------------
Confidence 00 000 011222233333433321100
Q ss_pred cccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEe-cCCCCCCC
Q psy8372 667 TKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD-FPLFLPSD 745 (883)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~d-fPl~~~~~ 745 (883)
.+.|+ +-.......||++..+ .+..| +||+| ||..
T Consensus 411 -----------------~~~~~------dl~~~~E~~L~~~v~~------------~~~~~-----~fI~d~yP~~---- 446 (550)
T PTZ00401 411 -----------------MAPTD------DINTTNEKLLGKLVKE------------RYGTD-----FFISDRFPSS---- 446 (550)
T ss_pred -----------------CCccc------ccCchHHHHHHHHHHH------------hcCCC-----EEEECCCChh----
Confidence 00110 0112344567765432 23333 89998 9997
Q ss_pred CCCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhc
Q psy8372 746 SGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKY 824 (883)
Q Consensus 746 ~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~ 824 (883)
..|| +|++++|+.+ +++|||+++|.||+||++|+|||++|+++|+.+|++++.++|||+|++|
T Consensus 447 -------~rpFY~~~~~~dp~~---------s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~ 510 (550)
T PTZ00401 447 -------ARPFYTMECKDDERF---------TNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRL 510 (550)
T ss_pred -------hCchhcCcCCCCCCE---------EEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHc
Confidence 7998 6898888765 4999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 825 GCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 825 G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||||||||||||||+|+++|++|||||++|||+.+
T Consensus 511 G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~ 546 (550)
T PTZ00401 511 GAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQ 546 (550)
T ss_pred CCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCC
Confidence 999999999999999999999999999999999864
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=610.84 Aligned_cols=349 Identities=28% Similarity=0.499 Sum_probs=276.5
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc-----------------CccchhhhcccccccccChhhhHHHHHHHHHHHHHH
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY-----------------NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~-----------------~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR 359 (883)
+++||.++++++++++..++|+.+++. ...+.++||+|||||||++..+++|++||.|++++|
T Consensus 157 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrirs~i~~~~R 236 (530)
T PLN02850 157 QQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFR 236 (530)
T ss_pred ccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 379999999999999988999988652 234679999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-c
Q psy8372 360 EFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-P 437 (883)
Q Consensus 360 ~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~ 437 (883)
+|| .++||+||+||+|+.+.+ +|+..|.++|+ ++.+||+||||+|||+++++|++||||||||||||+++++|| +
T Consensus 237 ~fl-~~~gF~EV~TP~L~~~~~egga~~F~v~yf--~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~ 313 (530)
T PLN02850 237 EFL-LSKGFVEIHTPKLIAGASEGGSAVFRLDYK--GQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLC 313 (530)
T ss_pred HHH-HHCCcEEEeCCccccCCCccccceeeeccC--CcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccch
Confidence 999 689999999999987765 66778999876 688999999999999999999999999999999999988888 9
Q ss_pred ceecccccccCC-CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCC
Q psy8372 438 EFTQLDIELSFT-TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRL 516 (883)
Q Consensus 438 EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~ 516 (883)
||||||+||+|. +++|+|+++|+||++++..+.. +|.+.++.++. ..+|..
T Consensus 314 EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~-----~~~~el~~i~~-----------------~~~~~~------ 365 (530)
T PLN02850 314 EFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNE-----RCKKELEAIRE-----------------QYPFEP------ 365 (530)
T ss_pred hhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHhhcc-----------------cCCcch------
Confidence 999999999998 4999999999999999876432 12222222111 100000
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEe
Q psy8372 517 PRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLF 596 (883)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (883)
+. ++.
T Consensus 366 ----------------~~------------------------------------------~~~----------------- 370 (530)
T PLN02850 366 ----------------LK------------------------------------------YLP----------------- 370 (530)
T ss_pred ----------------hh------------------------------------------hcC-----------------
Confidence 00 000
Q ss_pred eeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHH
Q psy8372 597 QIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVE 676 (883)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (883)
...+...+++.+++++
T Consensus 371 --------------------------------~~~rit~~ea~~~L~~-------------------------------- 386 (530)
T PLN02850 371 --------------------------------KTLRLTFAEGIQMLKE-------------------------------- 386 (530)
T ss_pred --------------------------------CcccCCHHHHHHHHHH--------------------------------
Confidence 0011123333344332
Q ss_pred HHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 677 EFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 677 ~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
.|++..+. .+........||.+..+.+ .. .|+||+|||.. ..||
T Consensus 387 -----~g~~~~~~----~dl~~~~E~~Lg~~v~~~~------------~~----~~~ii~~yP~~-----------~~pf 430 (530)
T PLN02850 387 -----AGVEVDPL----GDLNTESERKLGQLVKEKY------------GT----DFYILHRYPLA-----------VRPF 430 (530)
T ss_pred -----cCCCCCCC----CCcchHHHHHHHHHHHHhc------------CC----CeEEEECCccc-----------cCch
Confidence 11111100 0112235567777655432 12 36889999997 7999
Q ss_pred -CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceecc
Q psy8372 757 -TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALG 835 (883)
Q Consensus 757 -t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glG 835 (883)
++|+++|+.+ +++|||+++|.||+||++|+|||+.|+++++.+|++++.++|||+|++||||||||||||
T Consensus 431 Y~~~~~~d~~~---------~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiG 501 (530)
T PLN02850 431 YTMPCPDDPKY---------SNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVG 501 (530)
T ss_pred hccccCCCCCe---------EEEEEEEeCCEEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEc
Confidence 7888888765 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCCC
Q psy8372 836 IDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 836 ldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||+|+++|++|||||++|||+.+
T Consensus 502 lERLvM~l~g~~nIr~v~~FPR~p~ 526 (530)
T PLN02850 502 LERVVMLFCGLNNIRKTSLFPRDPQ 526 (530)
T ss_pred HHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999865
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=611.24 Aligned_cols=355 Identities=22% Similarity=0.335 Sum_probs=279.8
Q ss_pred ccccceEEEEeeeeeecccC-CCCCc---cccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCe
Q psy8372 294 WGLLSKEVIASNITVLNKAD-VNIPF---HIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDF 368 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~-~~lP~---~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF 368 (883)
...++++|.++++++++++. .++|. .++-++..+.++|+++|||||| ++..+++|++||+|+++||+|| +++||
T Consensus 174 t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff-~~~gF 252 (659)
T PTZ00385 174 MQRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYF-NERNF 252 (659)
T ss_pred cCCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHH-HHCCC
Confidence 34678999999999999964 22221 1122456789999999999997 6889999999999999999999 68999
Q ss_pred EEEcCCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 369 VEVETPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 369 ~EV~TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
+||+||+|++.. ++||++|.++++..+..+||+||||+|+|+++++|++||||||||||||+++++|+|||||||+|++
T Consensus 253 lEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a 332 (659)
T PTZ00385 253 VEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAA 332 (659)
T ss_pred EEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeeee
Confidence 999999997654 4467889998776677889999999999999999999999999999999999888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc----------------------CCCCceeeehHHHHHHh-CCCCCCccccchhhhhhcC
Q psy8372 448 FTTRDDVMRLIEELLCYCLNI----------------------PTRTFSRISYNDAISLY-GSDKPDLRYDCKIMIAIKE 504 (883)
Q Consensus 448 ~~~~~dvm~~~E~li~~i~~~----------------------~~~~f~rity~ea~~~y-g~~~~d~r~~~~~~~~~~~ 504 (883)
|.|++|+|+++|+||++++.. +.+||+|+||.|++.++ |.|.++
T Consensus 333 ~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~------------- 399 (659)
T PTZ00385 333 YHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPP------------- 399 (659)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCc-------------
Confidence 999999999999999998643 12478888855555554 332110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhh
Q psy8372 505 QPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSE 584 (883)
Q Consensus 505 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (883)
+.++
T Consensus 400 -----------------------------------------------------------~~dl----------------- 403 (659)
T PTZ00385 400 -----------------------------------------------------------PNEL----------------- 403 (659)
T ss_pred -----------------------------------------------------------cccC-----------------
Confidence 0000
Q ss_pred hhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccc
Q psy8372 585 ICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTN 664 (883)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (883)
.+...++.++.++++
T Consensus 404 ---------------------------------------------~~~~e~~~~~~~~~~-------------------- 418 (659)
T PTZ00385 404 ---------------------------------------------NTPKGIAYMSVVMLR-------------------- 418 (659)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHH--------------------
Confidence 000111222223322
Q ss_pred cccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCC
Q psy8372 665 KLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPS 744 (883)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~ 744 (883)
.|++.. ....+|.+..+++ +..++..+.+| +||+|||..
T Consensus 419 -----------------~gi~~~------------~~~~~g~~~~~lf----e~~ve~~l~qP-----tFI~dyP~e--- 457 (659)
T PTZ00385 419 -----------------YNIPLP------------PVRTAAKMFEKLI----DFFITDRVVEP-----TFVMDHPLF--- 457 (659)
T ss_pred -----------------cCCCCC------------cccchhHHHHHHH----HHHHHHhhCCc-----EEEeCCccc---
Confidence 222111 1134566666665 34455566665 899999997
Q ss_pred CCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH-----hCCCCcccH---H
Q psy8372 745 DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-----FLNIETSSL---Q 816 (883)
Q Consensus 745 ~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~-----~~~~~~~~~---~ 816 (883)
..||++++++|+.+ +++|||+++|.||+||++|+|||.+|+++|+ ..+.+++.+ +
T Consensus 458 --------~sPLak~~~~dp~~---------teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~De 520 (659)
T PTZ00385 458 --------MSPLAKEQVSRPGL---------AERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDE 520 (659)
T ss_pred --------cCcccccCCCCCCe---------EEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHH
Confidence 79999999888776 4999999999999999999999999999993 345666655 8
Q ss_pred HHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 817 HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 817 ~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
+||+|++||||||||+|||||||+|+|||++||||||+||.++.-
T Consensus 521 dfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~~ 565 (659)
T PTZ00385 521 TFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQD 565 (659)
T ss_pred HHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCcccccc
Confidence 999999999999999999999999999999999999999998865
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-69 Score=598.19 Aligned_cols=313 Identities=37% Similarity=0.631 Sum_probs=245.9
Q ss_pred chhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC-Cccceecc---CCCCceeeEec
Q psy8372 327 KEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-AREFVVPT---HEPNKFYSLVQ 402 (883)
Q Consensus 327 ~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g-a~~f~v~~---~~~~~~~~L~~ 402 (883)
++++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|++++++| +..|.+++ ...++.+||+|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff-~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFF-DKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHH-HhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 478999999999999999999999999999999999 68999999999999988665 78899982 12368899999
Q ss_pred CHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHHHHHHHHHHHHhcc-------------
Q psy8372 403 SPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLNI------------- 468 (883)
Q Consensus 403 Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~------------- 468 (883)
|||+|||+++++|++||||||||||+|++++.|| |||||||||++|+|++++|+++|+||+++++.
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~ 159 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNID 159 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcccccccc
Confidence 9999999999999999999999999999966666 99999999999999999999999999999863
Q ss_pred CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q psy8372 469 PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMS 548 (883)
Q Consensus 469 ~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (883)
++.||+|+||.||++.|+.++||++++.++.+ +.+.
T Consensus 160 ~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~-~~~~------------------------------------------- 195 (335)
T PF00152_consen 160 LPKPFPRITYEEAFEIYGGDKPDLRFDEELDD-LAEI------------------------------------------- 195 (335)
T ss_dssp SSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHH-HHHH-------------------------------------------
T ss_pred ccCCceEeeehHHHHHhhcccccchhHHHHHH-HHHH-------------------------------------------
Confidence 44679999999999999998888777654443 1000
Q ss_pred chhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCcc
Q psy8372 549 SYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDL 628 (883)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (883)
T Consensus 196 -------------------------------------------------------------------------------- 195 (335)
T PF00152_consen 196 -------------------------------------------------------------------------------- 195 (335)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHH
Q psy8372 629 DSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIR 708 (883)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr 708 (883)
.+ . +. ..|.+.
T Consensus 196 --------------~~-~------------------------------------~~------------------~~~~~l 206 (335)
T PF00152_consen 196 --------------EE-L------------------------------------EF------------------EVGRLL 206 (335)
T ss_dssp --------------HH-T------------------------------------TH------------------HCHHHH
T ss_pred --------------hc-c------------------------------------cc------------------hHHHHH
Confidence 00 0 00 000010
Q ss_pred HHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEE
Q psy8372 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEI 788 (883)
Q Consensus 709 ~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei 788 (883)
.... ++ .|..+....++||+|||.. .+||+++.+++.. ..+++|||+++|+||
T Consensus 207 ~~~~----e~----~L~~~~~~~p~fI~~~P~~-----------~~pf~~~~~~~~~--------~~~~~fdl~~~g~Ei 259 (335)
T PF00152_consen 207 SEEV----EP----YLVEKYFTDPVFITDYPAE-----------QSPFYKPPNDDDP--------GVAERFDLYIPGGEI 259 (335)
T ss_dssp HHHH----HH----HHHHHHSSSEEEEEEEBGG-----------GSTTTBBBSSSTT--------TBBSEEEEEETTEEE
T ss_pred HHHH----HH----HhhhcccCCcEEEEecccc-----------cCccccccccccc--------ccccceeEEEeCEEE
Confidence 1000 00 0000011256999999998 7999998877651 226999999999999
Q ss_pred eeeeeccCCHHHHHHHHHhCCCCccc----HHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 789 GGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 789 ~~Gs~R~~~~~~q~~~~~~~~~~~~~----~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
+|||+|+||+++|+++|+..++++++ ++|||+|+++|+|||||||||+|||+|+++|++||||||+|||+++
T Consensus 260 ~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 260 ANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp EEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred ehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 99999999999999999999988777 9999999999999999999999999999999999999999999863
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-67 Score=649.66 Aligned_cols=341 Identities=28% Similarity=0.418 Sum_probs=276.1
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++|+.++++++++++..++|.+. ++.++.++|+++|||||| ++..+++|++||+|+++||+|| +++||+||+||+|
T Consensus 721 e~ei~~~~i~ll~k~~~plP~k~--~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl-~~~gFlEVeTPiL 797 (1094)
T PRK02983 721 TLSLLVTSWRLAGKCLRPLPDKW--KGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETL-VARGFLEVETPIL 797 (1094)
T ss_pred CEEEEEeEEEEEeccCcCCCCcc--ccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCEe
Confidence 56788999999999987888654 356788999999999997 5899999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
++ +++|| ++|.++++..+..+||+||||+|+|+++++|++||||||||||||+++++|+|||||||+|++|.|++|+
T Consensus 798 ~~-~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~ 876 (1094)
T PRK02983 798 QQ-VHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTM 876 (1094)
T ss_pred ec-cCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhhcCCHHHH
Confidence 74 45554 5698877767788999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc--------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI--------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPT 514 (883)
Q Consensus 455 m~~~E~li~~i~~~--------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~ 514 (883)
|+++|+||+++++. ++.||+||||.||++++.... +...
T Consensus 877 m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~------------~~~~--------- 935 (1094)
T PRK02983 877 RDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVDISGPWPVVTVHDAVSEALGEE------------IDPD--------- 935 (1094)
T ss_pred HHHHHHHHHHHHHHHhCCcEEeeCCccccccccccCCCceEEEHHHHHHHHhCCC------------CCCC---------
Confidence 99999999998653 235888888888887752210 0000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeE
Q psy8372 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTV 594 (883)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (883)
T Consensus 936 -------------------------------------------------------------------------------- 935 (1094)
T PRK02983 936 -------------------------------------------------------------------------------- 935 (1094)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhh
Q psy8372 595 LFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLN 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (883)
...+++++++++
T Consensus 936 --------------------------------------~~~~~l~~~~~~------------------------------ 947 (1094)
T PRK02983 936 --------------------------------------TPLAELRKLCDA------------------------------ 947 (1094)
T ss_pred --------------------------------------CCHHHHHHHHHH------------------------------
Confidence 001122222222
Q ss_pred HHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccccc
Q psy8372 675 VEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHH 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~ 754 (883)
.+++..+ ....|++..+++ ++.+|+.+.+| +||+|||.. ..
T Consensus 948 -------~~i~~~~------------~~~~~~l~~~l~----~~~ve~~~~~P-----~Fv~dyP~~-----------~s 988 (1094)
T PRK02983 948 -------AGIPYRT------------DWDAGAVVLELY----EHLVEDRTTFP-----TFYTDFPTS-----------VS 988 (1094)
T ss_pred -------cCCCCCC------------CCCHhHHHHHHH----HHHHHhhcCCC-----EEEECCCcc-----------cc
Confidence 1111110 012355555555 35555566665 899999987 79
Q ss_pred CcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-----CCCCcccH---HHHHHHhhcCC
Q psy8372 755 PFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-----LNIETSSL---QHMIQAFKYGC 826 (883)
Q Consensus 755 PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-----~~~~~~~~---~~~l~a~~~G~ 826 (883)
||++++++|+.+ +++|||+++|+||+||++|+|||.+|+++|+. .+.+++.+ +|||+|++|||
T Consensus 989 pla~~~~~~p~~---------~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGm 1059 (1094)
T PRK02983 989 PLTRPHRSDPGL---------AERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAM 1059 (1094)
T ss_pred cccccCCCCCCe---------eEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCC
Confidence 999999888765 49999999999999999999999999999943 35677765 69999999999
Q ss_pred CCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 827 pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||||+|||||||+|+|||. ||||||+||+.+.
T Consensus 1060 PP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1060 PPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred CCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 99999999999999999995 9999999999875
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=585.00 Aligned_cols=350 Identities=29% Similarity=0.445 Sum_probs=297.4
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccC-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEV 371 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~-~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV 371 (883)
.+..+++.+.++++++++||+.|+|-.. ++.++.|+|+|+|||||.. +..+.+|..||+|+++||+|| +++||+||
T Consensus 126 ~T~~GelSv~v~~~~lLsKsL~pLPeK~--hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl-~~~gFlEV 202 (502)
T COG1190 126 KTKTGELSVSVEELRLLSKSLRPLPEKF--HGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFL-DDRGFLEV 202 (502)
T ss_pred ecCCCceEEEEEEEeeecccCCCCChhh--cCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCeEe
Confidence 4556789999999999999999999543 5678899999999999996 789999999999999999999 78999999
Q ss_pred cCCeeccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 372 ETPTLFKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 372 ~TP~l~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+||+| +..+|||. +|.+.++..+..+||++||++|++.+++||++|||+|+++||||+.+++|+|||||||+|+||+
T Consensus 203 ETP~l-q~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYa 281 (502)
T COG1190 203 ETPML-QPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYA 281 (502)
T ss_pred ccccc-cccCCCcccccceeeecccCCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHHHh
Confidence 99999 67889874 7999988878889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPT 514 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~ 514 (883)
|++|+|+++|+||++++.. +++||+|+++.||+.+|.... . |
T Consensus 282 Dy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~---------------~--~------ 338 (502)
T COG1190 282 DYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVD---------------F--D------ 338 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcc---------------c--c------
Confidence 9999999999999999865 667999999999998864310 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeE
Q psy8372 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTV 594 (883)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (883)
T Consensus 339 -------------------------------------------------------------------------------- 338 (502)
T COG1190 339 -------------------------------------------------------------------------------- 338 (502)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhh
Q psy8372 595 LFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLN 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (883)
.-...++++++|++.
T Consensus 339 ------------------------------------~~~~~e~~~~~ak~~----------------------------- 353 (502)
T COG1190 339 ------------------------------------DLFDDEEAKELAKKH----------------------------- 353 (502)
T ss_pred ------------------------------------ccCCHHHHHHHHHHh-----------------------------
Confidence 001123445555542
Q ss_pred HHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccccc
Q psy8372 675 VEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHH 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~ 754 (883)
+++.. +.. . +.+|++..+++ ++.+|..+.+| .||+|||.. .+
T Consensus 354 --------~i~~~--------~~~-~-~~~g~ll~~lF----e~~vE~~liqP-----TFv~d~P~e-----------iS 395 (502)
T COG1190 354 --------GIEVE--------KYG-T-WGLGHLLNELF----EELVEAKLIQP-----TFVTDHPVE-----------IS 395 (502)
T ss_pred --------CCCcC--------ccc-c-ccHHHHHHHHH----HHHhhhhhcCC-----ceeecCccc-----------cC
Confidence 11110 000 1 45788888888 46677788888 799999997 79
Q ss_pred CcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCccc--HHHHHHHhhcCC
Q psy8372 755 PFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSS--LQHMIQAFKYGC 826 (883)
Q Consensus 755 PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~--~~~~l~a~~~G~ 826 (883)
|+++++++++.++ ++|||+|+|.||+||++++|||..|+++|++ .|-+.+. .++|++|++|||
T Consensus 396 PLak~~~~~p~~t---------eRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGm 466 (502)
T COG1190 396 PLAKRHRSNPGLT---------ERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGM 466 (502)
T ss_pred ccccCCCCCcchh---------hhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCC
Confidence 9999999998875 8999999999999999999999999999943 3433332 478999999999
Q ss_pred CCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 827 pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
||+||+|||||||||+|||.+||||||+||-.++.
T Consensus 467 PPTgG~GiGIDRLvMllT~~~sIRdVilFP~mr~~ 501 (502)
T COG1190 467 PPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRPE 501 (502)
T ss_pred CCCCCccccHHHHHHHHcCCCchhheecccccCCC
Confidence 99999999999999999999999999999987653
|
|
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=563.68 Aligned_cols=382 Identities=29% Similarity=0.471 Sum_probs=312.8
Q ss_pred cchhhhhhhhhcccccccccCCCCCcccccccccccceEEEEeeeeeecccCCCCCccccccCc----------------
Q psy8372 262 SLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNK---------------- 325 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~~~~~P~el~~~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~---------------- 325 (883)
+...|...+....+..+...- .-+.+.+.+++.+++||.+.++.+++.+...+|+.+++...
T Consensus 127 ~Mvkf~~~is~ESiV~v~g~v--~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~ 204 (533)
T KOG0556|consen 127 QMVKFAGSISKESIVDVRGVV--VKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLA 204 (533)
T ss_pred HHHHHHhhcCcceEEEEEEEE--ecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccc
Confidence 444566555555444433221 12556678899999999999999999999999998876532
Q ss_pred -cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-CCCCCccceeccCCCCceeeEecC
Q psy8372 326 -AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQS 403 (883)
Q Consensus 326 -~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-~~~ga~~f~v~~~~~~~~~~L~~S 403 (883)
.+.+|||+||.||||+|..+++|++++.|..++|+|| ..+||+||+||+|..+ ++|||+.|.|.|+ +...||+||
T Consensus 205 ~Vn~dtRLdnRvlDLRtptnqAiFriq~gvc~~FRe~L-~~kgF~EIhTpKli~asSEGGanvF~v~Yf--k~~A~LAQS 281 (533)
T KOG0556|consen 205 RVNLDTRLDNRVLDLRTPTNQAIFRIQAGVCFAFREYL-RSKGFVEIHTPKLIGASSEGGANVFRVSYF--KQKAYLAQS 281 (533)
T ss_pred eecccccccceeeecccccchheeehHHHHHHHHHHHH-HhcCcceecccccccccCCCCceeEEEEec--cCcchhhcC
Confidence 2568999999999999999999999999999999999 6899999999999876 5788999999987 567899999
Q ss_pred HHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHHHHHHHHHHHHHhccCCCCceeeehHHH
Q psy8372 404 PQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLNIPTRTFSRISYNDA 481 (883)
Q Consensus 404 pql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dvm~~~E~li~~i~~~~~~~f~rity~ea 481 (883)
|||||||+++++++|||+|||+||+|+++|.|| .||+.||+||+|-. |+|||+++.+++..|++.+.. .|.+
T Consensus 282 PQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~e-----ry~~- 355 (533)
T KOG0556|consen 282 PQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRE-----RYAK- 355 (533)
T ss_pred hHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-
Confidence 999999999999999999999999999999999 99999999999975 999999999999999988754 3333
Q ss_pred HHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCC
Q psy8372 482 ISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPR 561 (883)
Q Consensus 482 ~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (883)
+|.. +..+ ||.+ .|+
T Consensus 356 ---------------Eie~-Vr~q------yp~e----------------~fk--------------------------- 370 (533)
T KOG0556|consen 356 ---------------EIET-VRKQ------YPFE----------------PFK--------------------------- 370 (533)
T ss_pred ---------------HHHH-Hhhc------CCCc----------------ccc---------------------------
Confidence 4444 5444 4431 011
Q ss_pred CCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHH
Q psy8372 562 SVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNL 641 (883)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (883)
++... ++ +
T Consensus 371 ---------------f~~~~-----------lr---------------------------l------------------- 378 (533)
T KOG0556|consen 371 ---------------FLEPP-----------LR---------------------------L------------------- 378 (533)
T ss_pred ---------------cCCCc-----------eE---------------------------e-------------------
Confidence 11000 00 1
Q ss_pred HHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCC
Q psy8372 642 AKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLP 721 (883)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~ 721 (883)
...+..+++...|.+.||.-.++ ...++.||.|..+.+
T Consensus 379 -----------------------------~~~e~v~mLreaGvE~g~~dDls----Te~Ek~LG~lV~eky--------- 416 (533)
T KOG0556|consen 379 -----------------------------TFKEGVAMLREAGVEMGDEDDLS----TESEKKLGQLVREKY--------- 416 (533)
T ss_pred -----------------------------ehHHHHHHHHHcCcccCCccccC----ChhHHHHHHHHHHHh---------
Confidence 11122344455667777765443 356789999988766
Q ss_pred cccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHH
Q psy8372 722 LEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSEL 800 (883)
Q Consensus 722 ~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~ 800 (883)
+-+|+.+-+||+. .+|| |||+|+|+.+ +++||+++.|.||.+|.||||||+.
T Consensus 417 -------~tdfyildkyP~a-----------vRPFYTmpd~~~p~y---------SnSyD~fmRGeEIlSGAQRIhdpe~ 469 (533)
T KOG0556|consen 417 -------DTDFYILDKYPLA-----------VRPFYTMPDPENPRY---------SNSYDFFMRGEEILSGAQRIHDPEL 469 (533)
T ss_pred -------CCcEEEEccCccc-----------cccccccCCCCCCCc---------ccchhheechhhhhccccccCCHHH
Confidence 1257788889997 7999 9999999876 4899999999999999999999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 801 QESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 801 q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
+.++++.+|+++...+.|+++|+||||||||+||||||+||+++|+.|||...+|||+++
T Consensus 470 L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPk 529 (533)
T KOG0556|consen 470 LVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPK 529 (533)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999865
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=607.19 Aligned_cols=327 Identities=21% Similarity=0.326 Sum_probs=257.9
Q ss_pred ccceEEEEeeeeeecccC-CCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 296 LLSKEVIASNITVLNKAD-VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~-~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
.+++||.++++++++++. .++|+..+ ....+.+| +|||||+|++.++++|++||+|.+++|+|| +++||+||+||
T Consensus 185 ~g~iEl~v~~i~VLg~a~~~p~Pi~~k--~~~~E~LR-~~RhLdLRt~~~~ailRiRS~i~~aiR~ff-~~~GFiEV~TP 260 (633)
T PLN02532 185 KHVIELEVEKILHIGTVDPEKYPLSKK--RLPLDMLR-DFSHFRPRTTTVASVTRVRSALTHATHTFF-QDHGFLYVQVP 260 (633)
T ss_pred CCcEEEEeeEEEEEecCCCCCCccccc--cCCHHHHh-hCcceecCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEeeCC
Confidence 568999999999999973 35665443 23445555 999999999999999999999999999999 68999999999
Q ss_pred eeccCCCCCCcc-ceecc--------------------------------------------------------------
Q psy8372 375 TLFKRTPGGARE-FVVPT-------------------------------------------------------------- 391 (883)
Q Consensus 375 ~l~~~~~~ga~~-f~v~~-------------------------------------------------------------- 391 (883)
+|++++|+||++ |.|..
T Consensus 261 iLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (633)
T PLN02532 261 IITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQL 340 (633)
T ss_pred eecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 999999988876 54431
Q ss_pred -------------------------CCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccc
Q psy8372 392 -------------------------HEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIE 445 (883)
Q Consensus 392 -------------------------~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e 445 (883)
..+++.+||+||||||||++ +++++|||+||||||||+++|+|| +||||||+|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~-~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~E 419 (633)
T PLN02532 341 ASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY-ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVE 419 (633)
T ss_pred cccccccccccccccccccccccccccCCCCeeeccCHHHHHHHH-HHhcCceEEEccceecCCCCCCcccccccceeee
Confidence 12367899999999999985 579999999999999999998777 999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhccCC---------------------------CCceeeehHHHHHHhCCCCCCccccchh
Q psy8372 446 LSFTTRDDVMRLIEELLCYCLNIPT---------------------------RTFSRISYNDAISLYGSDKPDLRYDCKI 498 (883)
Q Consensus 446 ~~~~~~~dvm~~~E~li~~i~~~~~---------------------------~~f~rity~ea~~~yg~~~~d~r~~~~~ 498 (883)
|+|.|++|+|+++|+||+++++.+. .||+||||.||++.+..
T Consensus 420 maf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~----------- 488 (633)
T PLN02532 420 MAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQ----------- 488 (633)
T ss_pred ehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHH-----------
Confidence 9999999999999999999887532 24444444444443211
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhccccc
Q psy8372 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCL 578 (883)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (883)
T Consensus 489 -------------------------------------------------------------------------------- 488 (633)
T PLN02532 489 -------------------------------------------------------------------------------- 488 (633)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecC
Q psy8372 579 HTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD 658 (883)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
..+.+ .+.
T Consensus 489 ------------------------------------------------------------------~~~~~------~e~ 496 (633)
T PLN02532 489 ------------------------------------------------------------------ATDKK------FET 496 (633)
T ss_pred ------------------------------------------------------------------hcCCC------ccc
Confidence 00000 000
Q ss_pred cccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEec
Q psy8372 659 SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDF 738 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~df 738 (883)
..+|..+| ....++.|++ + .+..| +||+||
T Consensus 497 ~~~~g~dL------------------------------~~e~Er~L~~---~------------~~~~P-----vFVtdy 526 (633)
T PLN02532 497 KPEWGIAL------------------------------TTEHLSYLAD---E------------IYKKP-----VIIYNY 526 (633)
T ss_pred ccccCCcc------------------------------ChHHHHHHHH---H------------HcCCC-----EEEECC
Confidence 00011100 0111222221 1 12334 899999
Q ss_pred CCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHH
Q psy8372 739 PLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQH 817 (883)
Q Consensus 739 Pl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~ 817 (883)
|.. ..||+|...+|..+ +++|||+++|+ ||+|||+|+|+++.+.++++..|++++.|+|
T Consensus 527 P~~-----------ikPFY~~~~~d~~~---------v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ew 586 (633)
T PLN02532 527 PKE-----------LKPFYVRLNDDGKT---------VAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEW 586 (633)
T ss_pred Chh-----------hchhhCCcCCCCCc---------eEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhhHHH
Confidence 997 79999876655443 48999999975 9999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 818 ~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||++++||+|||||||||||||+|+|||++||||||+|||+..
T Consensus 587 YLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g 629 (633)
T PLN02532 587 YLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWG 629 (633)
T ss_pred HHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcC
Confidence 9999999999999999999999999999999999999999864
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=598.69 Aligned_cols=349 Identities=21% Similarity=0.387 Sum_probs=275.0
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEV 371 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV 371 (883)
....+++++.++++++++++..++|... +..+.++|+++|||||| ++..+++|++||+|+++||+|| +++||+||
T Consensus 200 ~t~~gel~i~~~~i~llsk~l~~lP~~~---g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff-~~rGFlEV 275 (585)
T PTZ00417 200 KSKKGELSIFPKETIILSPCLHMLPMKY---GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFL-NDRGFIEV 275 (585)
T ss_pred CCCCceEEEEEEEEEEEecCCCCCCccc---CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCeEEE
Confidence 3445789999999999999988999763 34578999999999999 7899999999999999999999 78999999
Q ss_pred cCCeeccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 372 ETPTLFKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 372 ~TP~l~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+||+|+.. +|||. +|.++++..+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+
T Consensus 276 eTPiL~~~-~GGA~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~ 354 (585)
T PTZ00417 276 ETPTMNLV-AGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYA 354 (585)
T ss_pred eCCeeecc-CCcccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeeeecC
Confidence 99999764 77775 5877666667889999999999999999999999999999999999998889999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc----------------------CCCCceeeehHHHHHHh-CCCCCCccccchhhhhhcCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI----------------------PTRTFSRISYNDAISLY-GSDKPDLRYDCKIMIAIKEQP 506 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~----------------------~~~~f~rity~ea~~~y-g~~~~d~r~~~~~~~~~~~~~ 506 (883)
|++|+|+++|+||++++.. +..||+|+||.||++.| |.+.+. .
T Consensus 355 dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~-------------~- 420 (585)
T PTZ00417 355 DFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQ-------------P- 420 (585)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCCccc-------------c-
Confidence 9999999999999998753 22467777777777775 321100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhh
Q psy8372 507 PWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEIC 586 (883)
Q Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (883)
+.
T Consensus 421 --------------------------~~---------------------------------------------------- 422 (585)
T PTZ00417 421 --------------------------FD---------------------------------------------------- 422 (585)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred ccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccc
Q psy8372 587 SRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL 666 (883)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (883)
.....+++.+++++
T Consensus 423 --------------------------------------------~~~~~~el~~~l~~---------------------- 436 (585)
T PTZ00417 423 --------------------------------------------SPETINKMINLIKE---------------------- 436 (585)
T ss_pred --------------------------------------------ccCCHHHHHHHHHH----------------------
Confidence 00012223333332
Q ss_pred cccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC
Q psy8372 667 TKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS 746 (883)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~ 746 (883)
.|++..+ . ...|.+..+++ +..+++.+.+ .++||+|||..
T Consensus 437 ---------------~g~~~~~------~------~~~~~~l~~l~----e~~vE~~l~~----~PtFI~dyP~~----- 476 (585)
T PTZ00417 437 ---------------NKIEMPN------P------PTAAKLLDQLA----SHFIENKYPN----KPFFIIEHPQI----- 476 (585)
T ss_pred ---------------cCCCCCC------C------CCHHHHHHHHH----HHHHHHhhCC----CcEEEECCChh-----
Confidence 1221100 0 01233333333 2344555543 24899999987
Q ss_pred CCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCcccH---HH
Q psy8372 747 GTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSSL---QH 817 (883)
Q Consensus 747 ~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~~---~~ 817 (883)
..||++.+++|+.+ +++|||+++|.||++|++|+|||.+|+++|+. .| +++.+ ++
T Consensus 477 ------~sPLak~~~~dp~v---------~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Ded 540 (585)
T PTZ00417 477 ------MSPLAKYHRSKPGL---------TERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAA 540 (585)
T ss_pred ------hCchhhhcCCCCCe---------EEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHH
Confidence 79999888877665 49999999999999999999999999998832 24 44443 45
Q ss_pred HHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 818 ~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||+|++||||||||+|||||||+|+|||++||||||+||+++.
T Consensus 541 fl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 541 FCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 9999999999999999999999999999999999999999864
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-66 Score=593.57 Aligned_cols=350 Identities=22% Similarity=0.307 Sum_probs=259.9
Q ss_pred ccceEEEE-----eeeeeecccCC--CCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCe
Q psy8372 296 LLSKEVIA-----SNITVLNKADV--NIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDF 368 (883)
Q Consensus 296 ~~~iEI~~-----e~i~vl~k~~~--~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF 368 (883)
.+++|+.+ .++++++.+.. ++|+..+ . ...++++++||||+|++.++++|++||.|..++|+|| .++||
T Consensus 159 ~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k--~-~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff-~~~gF 234 (586)
T PTZ00425 159 KENVELALKDNSIHNFEIYGENLDPQKYPLSKK--N-HGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFF-QSRGF 234 (586)
T ss_pred CccEEEEEecCCCceEEEEeccCCCCCCCCCCc--c-CChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHH-HHCCC
Confidence 35689987 79999998743 4565433 2 3456666899999999999999999999999999999 78999
Q ss_pred EEEcCCeeccCCCCCCcc-ceeccC-------------------------------------------------------
Q psy8372 369 VEVETPTLFKRTPGGARE-FVVPTH------------------------------------------------------- 392 (883)
Q Consensus 369 ~EV~TP~l~~~~~~ga~~-f~v~~~------------------------------------------------------- 392 (883)
+||+||+|++++|+||++ |.|+..
T Consensus 235 ~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (586)
T PTZ00425 235 LYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYL 314 (586)
T ss_pred EEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999988 998532
Q ss_pred ------CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 393 ------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 393 ------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
.+++.+||+||||||+|+ |++|++|||+||||||+|+++++|| +||||||+||+|+|++++|+++|+||+++
T Consensus 315 ~~~~~~yF~k~ayL~~S~QLylE~-~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v 393 (586)
T PTZ00425 315 IDYKKDFFSKQAFLTVSGQLSLEN-LCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYC 393 (586)
T ss_pred ccccccccCcceEEEcCchHHHHH-HHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 224778999999999997 5688999999999999999999888 89999999999999999999999999999
Q ss_pred hccC-CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCC--CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q psy8372 466 LNIP-TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQ--PPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWG 542 (883)
Q Consensus 466 ~~~~-~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (883)
++.+ +..+..|+|- +... ...+.+.+... .+|++ +
T Consensus 394 ~~~vl~~~~~~i~~~------~~~~-----~~~l~~~l~~~~~~pf~r----------------------I--------- 431 (586)
T PTZ00425 394 IGYVLNNNFDDIYYF------EENV-----ETGLISRLKNILDEDFAK----------------------I--------- 431 (586)
T ss_pred HHHHhcccccccccc------cccc-----cccHHHHHHHhcCCCCCc----------------------C---------
Confidence 9863 3334444331 1100 00111111111 11211 0
Q ss_pred ccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeee
Q psy8372 543 ALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRIL 622 (883)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (883)
T Consensus 432 -------------------------------------------------------------------------------- 431 (586)
T PTZ00425 432 -------------------------------------------------------------------------------- 431 (586)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHh
Q psy8372 623 ILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLS 702 (883)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~ 702 (883)
..+++.++++... .. .+ ...+-|+.+ .....+
T Consensus 432 -----------ty~EAi~iL~~~~-~~------~~------------------------~~~~~G~dL------~~e~Er 463 (586)
T PTZ00425 432 -----------TYTNVIDLLQPYS-DS------FE------------------------VPVKWGMDL------QSEHER 463 (586)
T ss_pred -----------CHHHHHHHHHHhH-Hh------cC------------------------CCCCccccc------chHHHH
Confidence 0011111111100 00 00 000111110 011222
Q ss_pred HHHHHHHHhhhhcccccCCccc-CCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEE
Q psy8372 703 LLGMIRSESHKIKVKNTLPLEF-DNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDL 781 (883)
Q Consensus 703 ~lg~lr~~~~~~~~~~~l~~~l-~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dl 781 (883)
.|+. .+ .. ++||||||.. ..||++...+|..+ +.+|||
T Consensus 464 ~L~~----------------~~~~~-----PvFItdyP~~-----------~kPFY~~~~~d~~~---------v~~fDL 502 (586)
T PTZ00425 464 FVAE----------------QIFKK-----PVIVYNYPKD-----------LKAFYMKLNEDQKT---------VAAMDV 502 (586)
T ss_pred HHHH----------------HhcCC-----cEEEECCccc-----------cCccccCcCCCCCe---------EEEEeE
Confidence 2221 11 22 4999999987 79998855444333 389999
Q ss_pred EecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 782 VLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 782 v~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
+++|+ ||+|||+|+|+++.+.++++..|++++.|+|||++++||+|||||||||||||+|+|||++|||||++|||+.+
T Consensus 503 lvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g 582 (586)
T PTZ00425 503 LVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPG 582 (586)
T ss_pred EccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCC
Confidence 99984 99999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q psy8372 861 G 861 (883)
Q Consensus 861 ~ 861 (883)
-
T Consensus 583 ~ 583 (586)
T PTZ00425 583 H 583 (586)
T ss_pred c
Confidence 3
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=581.96 Aligned_cols=349 Identities=22% Similarity=0.348 Sum_probs=263.3
Q ss_pred ceEEEEeeeeeecccC-CCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKAD-VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~-~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++|+.++++++++++. .++|++.++ ...++++++||||+|++.+++++++||.|++++|+|| +++||+||+||+|
T Consensus 88 ~~El~~~~i~vl~~~~~~~~P~~~~~---~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~-~~~gf~eV~TP~l 163 (453)
T TIGR00457 88 PVELQVKKIEVVGEAEPDDYPLQKKE---HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYF-QENGFTWVSPPIL 163 (453)
T ss_pred CEEEEEeEEEEEecCCccCCCCCccc---cChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEecCCeE
Confidence 5789999999999996 578887654 3567788999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCCc-cceeccC-------CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccccc
Q psy8372 377 FKRTPGGAR-EFVVPTH-------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELS 447 (883)
Q Consensus 377 ~~~~~~ga~-~f~v~~~-------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~ 447 (883)
+.++++|+. .|.++.. ..+..+||+||||+|||++ ++|++|||||+||||+|+++++|| |||||||+||+
T Consensus 164 ~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~ 242 (453)
T TIGR00457 164 TSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMA 242 (453)
T ss_pred eecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeee
Confidence 988777665 5988721 2478889999999999975 689999999999999999998666 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCC--CCCCCCCCCCCCCCCCCCCC
Q psy8372 448 FTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQ--PPWPSGYPTRLPRRAGEPGF 525 (883)
Q Consensus 448 ~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~ 525 (883)
|+|++|+|+++|+||+++++.+.. ++.+.++.++.+.+ .+ ....+.+. .+|
T Consensus 243 ~~~~~dvm~~~E~lv~~i~~~~~~-----~~~~~~~~~~~~~~---~~--~~~~l~~~~~~~~----------------- 295 (453)
T TIGR00457 243 FANLNDLLQLAETLIKYIIKAVLE-----NCSQELKFLEKNFD---KD--LIKRLENIINNKF----------------- 295 (453)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHhhccCC---ch--HHHHHHHhcCCCC-----------------
Confidence 999999999999999999987533 24444555443221 11 00000000 000
Q ss_pred CCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccc
Q psy8372 526 DSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFR 605 (883)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (883)
T Consensus 296 -------------------------------------------------------------------------------- 295 (453)
T TIGR00457 296 -------------------------------------------------------------------------------- 295 (453)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCC
Q psy8372 606 SNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLE 685 (883)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (883)
.+...+++.+++++.... ++....|
T Consensus 296 -------------------------~rit~~ea~~~l~~~~~~-------~~~~~~~----------------------- 320 (453)
T TIGR00457 296 -------------------------ARITYTDAIEILKESDKN-------FEYEDFW----------------------- 320 (453)
T ss_pred -------------------------ceeEHHHHHHHHHhcCCC-------CcCCCCC-----------------------
Confidence 011112222222221000 0000001
Q ss_pred CCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChh
Q psy8372 686 EGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEH 765 (883)
Q Consensus 686 ~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~ 765 (883)
|+.+ ....++.|++ . .+.+ ++||||||.. ..||++...+|..
T Consensus 321 -g~~l------~~~~e~~L~~-----------~----~~~~-----p~fIt~~P~~-----------~~pfy~~~~~~~~ 362 (453)
T TIGR00457 321 -GDDL------QTEHERFLAE-----------E----YFKP-----PVFVTNYPKD-----------IKAFYMKLNDDGK 362 (453)
T ss_pred -CCCC------CcHHHHHHHH-----------H----hCCC-----CEEEECCCcc-----------cChhhcccCCCcC
Confidence 1100 0112222221 1 1223 4999999987 7999764435544
Q ss_pred hhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHh
Q psy8372 766 LLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILC 844 (883)
Q Consensus 766 ~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~ 844 (883)
+ +++|||+++|+ ||+|||+|+|+++.+.++++..|++++.|+|||+|++||+|||||||||||||+|+|+
T Consensus 363 ~---------~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~ 433 (453)
T TIGR00457 363 T---------VAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYIT 433 (453)
T ss_pred c---------eeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHh
Confidence 4 48999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q psy8372 845 GTQSIRDVIAFPKGFG 860 (883)
Q Consensus 845 ~~~sIRdvi~FPk~~~ 860 (883)
|++|||||++|||+.+
T Consensus 434 g~~~Irdv~~FPr~~~ 449 (453)
T TIGR00457 434 GLENIRDAIPFPRTPG 449 (453)
T ss_pred CCCcHhhhccCcCCCC
Confidence 9999999999999865
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=586.55 Aligned_cols=353 Identities=23% Similarity=0.299 Sum_probs=265.2
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
.+.+|+.++++++++++..++|+..+. .+ .+.+..++|||+|++.+++++++||+|++++|+|| .++||+||+||+
T Consensus 177 ~~~~EL~v~~i~vlg~a~~~~Pi~~~~--~s-~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff-~~~gF~eV~TPi 252 (565)
T PLN02603 177 KQKVELKVSKIVVVGKSDPSYPIQKKR--VS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF-QENGFVWVSSPI 252 (565)
T ss_pred CccEEEEEeEEEEEECCCCCCCCcccc--cc-hhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCe
Confidence 457999999999999997778876543 23 34444799999999999999999999999999999 789999999999
Q ss_pred eccCCCCCCcc-ceeccC----------------------------CCCceeeEecCHHHHHHHHHccCCCcEEEEeece
Q psy8372 376 LFKRTPGGARE-FVVPTH----------------------------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~~----------------------------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~F 426 (883)
|++++||||++ |.|++. .+++.+||++|||||||+ ++++++|||+|||||
T Consensus 253 Lt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~-~~~~l~rVy~igp~F 331 (565)
T PLN02603 253 ITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGET-YATALSDVYTFGPTF 331 (565)
T ss_pred ecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHH-HHhcccceEEEecce
Confidence 99999999887 876421 135667999999999998 578999999999999
Q ss_pred ecCCCCCCCC-cceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCC
Q psy8372 427 RDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQ 505 (883)
Q Consensus 427 R~E~~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~ 505 (883)
|+|+++|+|| +||||||+||+|+|++|+|+++|++|+++++.+.. ++.+-++..+... ...+.+.+.+.
T Consensus 332 RaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~-----~~~~el~~~~~~~-----~~~~~~~l~~~ 401 (565)
T PLN02603 332 RAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILE-----NCKEDMEFFNTWI-----EKGIIDRLSDV 401 (565)
T ss_pred eCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHc-----ccHhHHHhcCCcc-----cccHHHHHHHh
Confidence 9999998777 99999999999999999999999999999987543 2445454443311 11111101100
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchh
Q psy8372 506 --PPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQS 583 (883)
Q Consensus 506 --~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (883)
.+|+
T Consensus 402 ~~~~f~-------------------------------------------------------------------------- 407 (565)
T PLN02603 402 VEKNFV-------------------------------------------------------------------------- 407 (565)
T ss_pred cCCCCC--------------------------------------------------------------------------
Confidence 0010
Q ss_pred hhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccccc
Q psy8372 584 EICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWT 663 (883)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (883)
+...+++.+++++.... .+...+|.
T Consensus 408 ------------------------------------------------rity~EAi~iL~~~~~~-------~~~~~~~g 432 (565)
T PLN02603 408 ------------------------------------------------QLSYTDAIELLLKAKKK-------FEFPVKWG 432 (565)
T ss_pred ------------------------------------------------CCCHHHHHHHHHHhccc-------cCCCCCcc
Confidence 00112222222221000 00000121
Q ss_pred ccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCC
Q psy8372 664 NKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLP 743 (883)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~ 743 (883)
.+| ....++.|++ .+.+. +++||+|||..
T Consensus 433 ~dl------------------------------~~e~Er~L~~----------------~~~~~---~PvfVtdyP~~-- 461 (565)
T PLN02603 433 LDL------------------------------QSEHERYITE----------------EAFGG---RPVIIRDYPKE-- 461 (565)
T ss_pred ccc------------------------------cHHHHHHHHH----------------HhccC---CCEEEECCccc--
Confidence 111 0112222221 11100 34999999997
Q ss_pred CCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHh
Q psy8372 744 SDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAF 822 (883)
Q Consensus 744 ~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~ 822 (883)
..||+|+..+|..+ +++|||+++|+ ||+|||+|+|+++.+.++++..|+++++|+|||+++
T Consensus 462 ---------ikpFYm~~~~d~~~---------v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~ 523 (565)
T PLN02603 462 ---------IKAFYMRENDDGKT---------VAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLR 523 (565)
T ss_pred ---------cCccccccCCCCCe---------eEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 79999987665444 37999999986 999999999999999999999999999999999999
Q ss_pred hcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 823 KYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 823 ~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
+||+|||||||||||||+|+|+|++||||||+|||....
T Consensus 524 r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g~ 562 (565)
T PLN02603 524 RYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPGS 562 (565)
T ss_pred hccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCCC
Confidence 999999999999999999999999999999999998654
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=582.97 Aligned_cols=329 Identities=22% Similarity=0.334 Sum_probs=259.5
Q ss_pred cceEEEEeeeeeecccC-CCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 297 LSKEVIASNITVLNKAD-VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~-~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
+++|+.++++++++++. .++|+..+. .+.++++++|||++|++.++++|++||.|.+++|+|| .++||+||+||+
T Consensus 122 ~~iEl~v~~i~vl~~a~~~~~Pi~~~~---~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff-~~~gFiEI~TP~ 197 (572)
T PLN02221 122 QKIELSVEKVIDVGTVDPTKYPLPKTK---LTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFF-QEHSFLYIHTPI 197 (572)
T ss_pred ccEEEEEeEEEEEecCCCCCCCCCCCc---CChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCe
Confidence 47899999999999984 367765432 3466666999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCcc-ceecc---------------------------------------------------------------
Q psy8372 376 LFKRTPGGARE-FVVPT--------------------------------------------------------------- 391 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~--------------------------------------------------------------- 391 (883)
|++++|+||++ |.|..
T Consensus 198 Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (572)
T PLN02221 198 ITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKES 277 (572)
T ss_pred eccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhh
Confidence 99999887765 87721
Q ss_pred -------------------------CCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccc
Q psy8372 392 -------------------------HEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIE 445 (883)
Q Consensus 392 -------------------------~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e 445 (883)
..+|+.+||+||||||||++ +++++|||+||||||||+++|+|| +||||+|+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~-~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~E 356 (572)
T PLN02221 278 LAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETY-ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPE 356 (572)
T ss_pred hhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHH-HHhcCCeEEEccceecCCCCCCcccccccceeee
Confidence 13478899999999999984 577999999999999999988777 999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhccCC---------------------------CCceeeehHHHHHHhCCCCCCccccchh
Q psy8372 446 LSFTTRDDVMRLIEELLCYCLNIPT---------------------------RTFSRISYNDAISLYGSDKPDLRYDCKI 498 (883)
Q Consensus 446 ~~~~~~~dvm~~~E~li~~i~~~~~---------------------------~~f~rity~ea~~~yg~~~~d~r~~~~~ 498 (883)
|+|.|++|+|+++|+||+++++.+. .||+||||.||++.+.....
T Consensus 357 maf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~-------- 428 (572)
T PLN02221 357 IAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVA-------- 428 (572)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhh--------
Confidence 9999999999999999999887522 25555555555554211000
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhccccc
Q psy8372 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCL 578 (883)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (883)
. +.++
T Consensus 429 ------~----------------------------------------------------------g~~~----------- 433 (572)
T PLN02221 429 ------K----------------------------------------------------------GKEF----------- 433 (572)
T ss_pred ------c----------------------------------------------------------CCCC-----------
Confidence 0 0000
Q ss_pred ccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecC
Q psy8372 579 HTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD 658 (883)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
+.
T Consensus 434 ------------------------------------------------------------------------------~~ 435 (572)
T PLN02221 434 ------------------------------------------------------------------------------DN 435 (572)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcc-cCCCCCccEEEEEe
Q psy8372 659 SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLE-FDNPKSFSIFWVVD 737 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~-l~~~~~~~f~wV~d 737 (883)
..+|..++ ....++.|+. . ..+ ++||+|
T Consensus 436 ~~~~G~dl------------------------------~~e~Er~L~~----------------~~~~~-----pvfv~d 464 (572)
T PLN02221 436 NVEWGIDL------------------------------ASEHERYLTE----------------VLFQK-----PLIVYN 464 (572)
T ss_pred Ccchhhhh------------------------------hHHHHHHHHH----------------HhcCC-----cEEEEc
Confidence 00011000 0011122221 1 122 389999
Q ss_pred cCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHH
Q psy8372 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQ 816 (883)
Q Consensus 738 fPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~ 816 (883)
||.. ..||+|+.++|..+ +.+|||+++|+ ||.||++|+|+++.+.++++..|++++.|+
T Consensus 465 yP~~-----------~~pfy~~~~~d~~~---------~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~ 524 (572)
T PLN02221 465 YPKG-----------IKAFYMRLNDDEKT---------VAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYE 524 (572)
T ss_pred CChh-----------hCcccccCCCCCce---------EEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCChhhhH
Confidence 9987 79999876655443 37999999985 999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 817 HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 817 ~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
|||+|++||+|||||||||||||+|+|+|++||||||+|||+.+-.
T Consensus 525 ~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~ 570 (572)
T PLN02221 525 WYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKA 570 (572)
T ss_pred HHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcC
Confidence 9999999999999999999999999999999999999999986543
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=581.43 Aligned_cols=323 Identities=27% Similarity=0.419 Sum_probs=260.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+..+. ...++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|+
T Consensus 86 ~~el~~~~i~vl~~~~~~~p~~~~~---~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~-~~~gf~EV~TP~L~ 161 (450)
T PRK03932 86 GYELQATKIEVIGEDPEDYPIQKKR---HSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFF-NENGFVWVDTPIIT 161 (450)
T ss_pred CEEEEEEEEEEccCCCCCCCCCccc---cChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEecCCcee
Confidence 6899999999999986788887654 3467888999999999999999999999999999999 68999999999999
Q ss_pred cCCCCCCc-cceecc-------CCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccC
Q psy8372 378 KRTPGGAR-EFVVPT-------HEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSF 448 (883)
Q Consensus 378 ~~~~~ga~-~f~v~~-------~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~ 448 (883)
+++++|+. .|.+++ ...+..+||+||||+|||++ ++|++|||||+||||||+++++|| |||||||+|++|
T Consensus 162 ~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~ 240 (450)
T PRK03932 162 ASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAF 240 (450)
T ss_pred ccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCccccccccccceEEec
Confidence 88876665 599854 23478899999999999985 689999999999999999987676 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCC---------------------------CCceeeehHHHHHHhCCCCCCccccchhhhh
Q psy8372 449 TTRDDVMRLIEELLCYCLNIPT---------------------------RTFSRISYNDAISLYGSDKPDLRYDCKIMIA 501 (883)
Q Consensus 449 ~~~~dvm~~~E~li~~i~~~~~---------------------------~~f~rity~ea~~~yg~~~~d~r~~~~~~~~ 501 (883)
.|++|+|+++|+||++++..+. .||+||||.||++.+....
T Consensus 241 ~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~------------ 308 (450)
T PRK03932 241 ADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSG------------ 308 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcC------------
Confidence 9999999999999999866422 3555555555555321100
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccc
Q psy8372 502 IKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTT 581 (883)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (883)
. .+.
T Consensus 309 ---~--------------------------~~~----------------------------------------------- 312 (450)
T PRK03932 309 ---K--------------------------KFE----------------------------------------------- 312 (450)
T ss_pred ---C--------------------------CcC-----------------------------------------------
Confidence 0 000
Q ss_pred hhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccc
Q psy8372 582 QSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLE 661 (883)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (883)
....
T Consensus 313 ----------------------------------------------------------------------------~~~~ 316 (450)
T PRK03932 313 ----------------------------------------------------------------------------FPVE 316 (450)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0000
Q ss_pred ccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCC
Q psy8372 662 WTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741 (883)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~ 741 (883)
|...+ .......|+. +.+..| +||+|||..
T Consensus 317 ~g~~l------------------------------~~~~e~~l~~---------------~~~~~p-----vfI~~yP~~ 346 (450)
T PRK03932 317 WGDDL------------------------------GSEHERYLAE---------------EHFKKP-----VFVTNYPKD 346 (450)
T ss_pred ccccc------------------------------ChHHHHHHHH---------------HhcCCc-----EEEECCCcc
Confidence 00000 0001111111 023333 899999987
Q ss_pred CCCCCCCccccccCcC-CCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHH
Q psy8372 742 LPSDSGTLESAHHPFT-QPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMI 819 (883)
Q Consensus 742 ~~~~~~~~~~~h~PFt-~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l 819 (883)
..||+ ++++++ .+ +++|||++||+ ||.||++|+|+++.+.++++.+|++++.++||+
T Consensus 347 -----------~~pfy~~~~~~~-~~---------~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl 405 (450)
T PRK03932 347 -----------IKAFYMRLNPDG-KT---------VAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYL 405 (450)
T ss_pred -----------cCcccCcCCCCC-CE---------EEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHH
Confidence 79997 566666 54 58999999995 999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 820 QAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 820 ~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
++++||||||||||||||||+|+++|++|||||++|||+.+
T Consensus 406 ~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~ 446 (450)
T PRK03932 406 DLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPG 446 (450)
T ss_pred HHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCC
Confidence 99999999999999999999999999999999999999865
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=540.45 Aligned_cols=294 Identities=36% Similarity=0.610 Sum_probs=242.4
Q ss_pred cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEecCH
Q psy8372 326 AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSP 404 (883)
Q Consensus 326 ~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~~Sp 404 (883)
.+.++|+++||||+|++..++++++|+.|.+++|+|| .++||+||+||+|+.+.+ +++..|.++++ ++.+||+|||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f-~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~--~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFL-RENGFTEVHTPKITSTDTEGGAELFKVSYF--GKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEeeCCceecCCCCccCCccccccC--CCcceecCCH
Confidence 3578899999999999999999999999999999999 689999999999988765 45667988765 6788999999
Q ss_pred HHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHHHHHHHHHHHHHHHhcc--------------
Q psy8372 405 QQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRDDVMRLIEELLCYCLNI-------------- 468 (883)
Q Consensus 405 ql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~-------------- 468 (883)
|+|||+++++ ++||||||||||+|++++.|| |||||||||++|+ |++|+|+++|+||++++..
T Consensus 79 ql~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 79 QLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 9999998777 999999999999999988655 9999999999999 9999999999999998852
Q ss_pred -------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy8372 469 -------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVW 541 (883)
Q Consensus 469 -------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (883)
+..||+||||.||++.+....+. . . + .|
T Consensus 158 ~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--------~----~---------------------------~------~~ 192 (322)
T cd00776 158 LNRELLKPLEPFPRITYDEAIELLREKGVE--------E----E---------------------------V------KW 192 (322)
T ss_pred cCcccccCCCCceEEEHHHHHHHHHHcCCC--------C----C---------------------------C------Cc
Confidence 23578888888888764221000 0 0 0 00
Q ss_pred cccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceee
Q psy8372 542 GALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRI 621 (883)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (883)
|.+
T Consensus 193 -------------------------------------------------------------------------~~~---- 195 (322)
T cd00776 193 -------------------------------------------------------------------------GED---- 195 (322)
T ss_pred -------------------------------------------------------------------------cch----
Confidence 000
Q ss_pred eecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhH
Q psy8372 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVL 701 (883)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~ 701 (883)
| .....
T Consensus 196 ----------------------------------------l----------------------------------~~~~e 201 (322)
T cd00776 196 ----------------------------------------L----------------------------------STEHE 201 (322)
T ss_pred ----------------------------------------h----------------------------------cHHHH
Confidence 0 00011
Q ss_pred hHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccceeeE
Q psy8372 702 SLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYD 780 (883)
Q Consensus 702 ~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~D 780 (883)
+.|+. .++ . .++||+|||.. ..|| ++++++++.+ +++||
T Consensus 202 ~~l~~------------~~~---~-----~p~fi~~~P~~-----------~~pfy~~~~~~~~~~---------~~~fd 241 (322)
T cd00776 202 RLLGE------------IVK---G-----DPVFVTDYPKE-----------IKPFYMKPDDDNPET---------VESFD 241 (322)
T ss_pred HHHHH------------HhC---C-----CcEEEECCccc-----------cCCceeeecCCCCCe---------eEEEE
Confidence 12221 110 2 34999999987 7899 5566665544 59999
Q ss_pred EEecC-eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 781 LVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 781 lv~~G-~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
|+++| +||+|||+|+||+++|+++|+..|++++.++|||+|++||+|||||||||||||+|+++|++|||||++|||..
T Consensus 242 l~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~ 321 (322)
T cd00776 242 LLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDP 321 (322)
T ss_pred EEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999975
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=527.86 Aligned_cols=270 Identities=53% Similarity=0.917 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCccceeccCC-CCceeeEecCHHHHHHHHHccCCCcEEEEeece
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~f~v~~~~-~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~F 426 (883)
+++||+|++++|+|| .++||+||+||+|++++++|+++|.+++.. .+.+++|+||||+|||+++++|++|||+|+|||
T Consensus 1 l~~Rs~i~~~iR~f~-~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFL-DEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHH-HHCCCEEEeCCeeecCCCCCCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 478999999999999 689999999999998888899889888763 466778999999999998999999999999999
Q ss_pred ecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhh
Q psy8372 427 RDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIA 501 (883)
Q Consensus 427 R~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~ 501 (883)
|+|+++++||+||||+|+|++|.|++|+|+++|+||++++.. ++.||+||||.||++.||.+
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~~~~------------- 146 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERYGFK------------- 146 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHhCCC-------------
Confidence 999999999999999999999999999999999999999863 45799999999999998732
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccc
Q psy8372 502 IKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTT 581 (883)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (883)
+.|..+||.
T Consensus 147 ----~~~~~d~~~------------------------------------------------------------------- 155 (280)
T cd00777 147 ----FLWIVDFPL------------------------------------------------------------------- 155 (280)
T ss_pred ----CccccCCcc-------------------------------------------------------------------
Confidence 112211110
Q ss_pred hhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccc
Q psy8372 582 QSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLE 661 (883)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (883)
+ -|.
T Consensus 156 ----------------------------------------~-~~~----------------------------------- 159 (280)
T cd00777 156 ----------------------------------------F-EWD----------------------------------- 159 (280)
T ss_pred ----------------------------------------c-CCh-----------------------------------
Confidence 0 000
Q ss_pred ccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCC
Q psy8372 662 WTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741 (883)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~ 741 (883)
++. +
T Consensus 160 ------------------------------------------~~~-----------~----------------------- 163 (280)
T cd00777 160 ------------------------------------------EEE-----------G----------------------- 163 (280)
T ss_pred ------------------------------------------hHH-----------H-----------------------
Confidence 000 0
Q ss_pred CCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCC----cccHHH
Q psy8372 742 LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIE----TSSLQH 817 (883)
Q Consensus 742 ~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~----~~~~~~ 817 (883)
++...+|||+++.+.+..+...+|..-.+++|||+++|+||+|||+|+|||++|+++|+..|++ ++.++|
T Consensus 164 ------~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~ 237 (280)
T cd00777 164 ------RLVSAHHPFTAPKEEDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGF 237 (280)
T ss_pred ------HHHHHhCCCcCCCcccchhhhcCCccCeeEEEEEEeCCEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHH
Confidence 0001156776665554433333554344799999999999999999999999999999998988 456899
Q ss_pred HHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 818 ~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||+|++||+|||||||||||||+|+++|++|||||++|||+.+
T Consensus 238 yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 238 LLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred HHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999999999999999999999863
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=529.18 Aligned_cols=293 Identities=27% Similarity=0.377 Sum_probs=235.1
Q ss_pred cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCcc-----c---eeccCCCCce
Q psy8372 326 AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGARE-----F---VVPTHEPNKF 397 (883)
Q Consensus 326 ~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~-----f---~v~~~~~~~~ 397 (883)
...++|++||++++|++.++++|++||.|++++|+|| .++||+||+||+|++++++|+.. | .+.+ .++.
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff-~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~ 84 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFL-DGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDF--YGVE 84 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCeEecCCCCCCCccccCCcccccccc--CCCc
Confidence 3578899999999999999999999999999999999 68999999999999876543321 3 3333 4788
Q ss_pred eeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHHHHhcc------
Q psy8372 398 YSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI------ 468 (883)
Q Consensus 398 ~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~------ 468 (883)
+||+||||+|||++ ++|++||||||||||||++++ +|+|||||||||++|.|++|+|+++|+||++++..
T Consensus 85 ~yL~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~ 163 (335)
T PRK06462 85 YYLADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHE 163 (335)
T ss_pred eeeccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999975 567999999999999999998 66699999999999999999999999999999853
Q ss_pred ------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q psy8372 469 ------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGS 536 (883)
Q Consensus 469 ------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 536 (883)
++.||+||||.||++.+.....+ ..
T Consensus 164 ~~i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~-----------------------------------------~~-- 200 (335)
T PRK06462 164 DELEFFGRDLPHLKRPFKRITHKEAVEILNEEGCR-----------------------------------------GI-- 200 (335)
T ss_pred HHHHhcCCccccCCCCCeEEEHHHHHHHHHhcCCC-----------------------------------------cc--
Confidence 23567777777776642110000 00
Q ss_pred ccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCc
Q psy8372 537 VLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGE 616 (883)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (883)
T Consensus 201 -------------------------------------------------------------------------------- 200 (335)
T PRK06462 201 -------------------------------------------------------------------------------- 200 (335)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCC
Q psy8372 617 DVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGK 696 (883)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 696 (883)
..+.+
T Consensus 201 --------------~~~~l------------------------------------------------------------- 205 (335)
T PRK06462 201 --------------DLEEL------------------------------------------------------------- 205 (335)
T ss_pred --------------hHHHH-------------------------------------------------------------
Confidence 00000
Q ss_pred chhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC-CCCChhhhccCCCCcc
Q psy8372 697 QEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP-HPEDEHLLSSNPLEVR 775 (883)
Q Consensus 697 ~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p-~~~d~~~~~~~~~~~~ 775 (883)
....++.|+. .+.+| +||+|||.. ..||++. ++++..+
T Consensus 206 ~~~~E~~l~~----------------~~~~p-----~fi~~yP~~-----------~~pfy~~~~~~~~~~--------- 244 (335)
T PRK06462 206 GSEGEKSLSE----------------HFEEP-----FWIIDIPKG-----------SREFYDREDPERPGV--------- 244 (335)
T ss_pred hHHHHHHHHH----------------HhCCC-----EEEECCChh-----------hCCcccccCCCCCCE---------
Confidence 0001112221 22333 899999986 6899764 4555443
Q ss_pred ceeeEEEec--CeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccc
Q psy8372 776 GLHYDLVLN--GNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853 (883)
Q Consensus 776 ~~~~Dlv~~--G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi 853 (883)
+++|||+++ +.||+||++|+|+++.+.++++.+|++++.++|||+|++||+|||||||||||||+|+++|++|||||+
T Consensus 245 ~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~ 324 (335)
T PRK06462 245 LRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQ 324 (335)
T ss_pred EEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheee
Confidence 589999994 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8372 854 AFPKGFGG 861 (883)
Q Consensus 854 ~FPk~~~~ 861 (883)
+|||...-
T Consensus 325 ~FPr~~g~ 332 (335)
T PRK06462 325 PFPRVPGI 332 (335)
T ss_pred eccCCCCC
Confidence 99998653
|
|
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-61 Score=518.09 Aligned_cols=374 Identities=26% Similarity=0.459 Sum_probs=278.9
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccC-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEV 371 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~-~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV 371 (883)
.+..+++.|.+.++.+|++|+.++|-. ..+..+.|+|+++||||+.. +..+.+|++|++|+..||.|| +++||+||
T Consensus 171 rt~~gELSi~~~~~~lLspcLh~lP~~--~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfl-d~rgFlEV 247 (560)
T KOG1885|consen 171 RTKSGELSIIPNEIILLSPCLHMLPHE--HFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFL-DSRGFLEV 247 (560)
T ss_pred cCCCceEEEeecchheecchhccCChh--hcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhcCceEe
Confidence 455668999999999999999999922 23456789999999999995 789999999999999999999 89999999
Q ss_pred cCCeeccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 372 ETPTLFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 372 ~TP~l~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+||+|. ..+||| ++|.+.++..+..+||+.+||||++++++||++|||+||+.||||+.+.+|+||||.||+||+|+
T Consensus 248 ETPmmn-~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYa 326 (560)
T KOG1885|consen 248 ETPMMN-MIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYA 326 (560)
T ss_pred cchhhc-cccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHh
Confidence 999994 467886 47999998888889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRR 529 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 529 (883)
|++|+|+++|+|++.++..++..+ .|+| ..+.|+.+ ..++ | ++ +||.+
T Consensus 327 dy~dlm~~TE~l~s~mv~~i~G~~-~i~y-------~p~~~~~~-~~el-d-f~--~pfrr------------------- 374 (560)
T KOG1885|consen 327 DYEDLMDMTEELLSGMVKNITGSY-KITY-------HPNGPEEP-ELEL-D-FT--RPFRR------------------- 374 (560)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCce-eEee-------cCCCCCCC-ceee-e-cc--CCeee-------------------
Confidence 999999999999999998755422 1222 11222111 0000 0 10 11111
Q ss_pred CCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcc
Q psy8372 530 GPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRS 609 (883)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (883)
+. +|. .+.+.+
T Consensus 375 --------------i~-----mi~-----------------------~L~k~l--------------------------- 385 (560)
T KOG1885|consen 375 --------------IE-----MIE-----------------------ELEKEL--------------------------- 385 (560)
T ss_pred --------------ee-----HHH-----------------------HHHHHh---------------------------
Confidence 00 000 000000
Q ss_pred cccCCCccceeeeecCCcccc-chhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCc
Q psy8372 610 ETKSSGEDVYRILILPKDLDS-TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGD 688 (883)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 688 (883)
| +.+|.+..+ +.+..+-|..+.++ .+++
T Consensus 386 -----g------i~l~~~~~l~~~e~~~~L~~~~~~-------------------------------------~~v~--- 414 (560)
T KOG1885|consen 386 -----G------IKLPPGSTLHTEETRELLKSLCVD-------------------------------------EAVE--- 414 (560)
T ss_pred -----C------CCCCCccccCchhhHHHHHHHHHh-------------------------------------cccC---
Confidence 0 111111111 11122222222221 1111
Q ss_pred EEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhc
Q psy8372 689 LIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLS 768 (883)
Q Consensus 689 ~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~ 768 (883)
+..+......|.+|.. ..||+.+.+| .||.|+|.. .+|.+++|.....++
T Consensus 415 -----~p~p~t~arlLdKLvg--------~flE~~cvnP-----TFi~~hP~i-----------mSPLAK~hrs~~glt- 464 (560)
T KOG1885|consen 415 -----CPPPRTTARLLDKLVG--------EFLEPTCVNP-----TFIIDHPQI-----------MSPLAKYHRSKAGLT- 464 (560)
T ss_pred -----CCCcccHHHHHHHHHh--------HhhccccCCC-----eeEcCCchh-----------cCccccccccccchh-
Confidence 1222233344554433 5567788887 799999987 899999999888774
Q ss_pred cCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC------CCCcc--cHHHHHHHhhcCCCCCcceeccHHHHH
Q psy8372 769 SNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL------NIETS--SLQHMIQAFKYGCPPHGGIALGIDRLM 840 (883)
Q Consensus 769 ~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~------~~~~~--~~~~~l~a~~~G~pPhgG~glGldRlv 840 (883)
++|+|+++|.||+|++.++|||..|+.+|++. |=|+. ..+.|+.|++||+||+||||+|||||+
T Consensus 465 --------eRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~ 536 (560)
T KOG1885|consen 465 --------ERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLV 536 (560)
T ss_pred --------hHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhh
Confidence 89999999999999999999999999999442 22322 257899999999999999999999999
Q ss_pred HHHhCCCCccccccCCCCCC
Q psy8372 841 SILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 841 m~l~~~~sIRdvi~FPk~~~ 860 (883)
|+||+..|||||++||-.+.
T Consensus 537 MllTds~~I~EVL~Fp~mkp 556 (560)
T KOG1885|consen 537 MLLTDSNNIREVLLFPAMKP 556 (560)
T ss_pred hhhcCCcchhheeeccccCh
Confidence 99999999999999997653
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=519.28 Aligned_cols=303 Identities=28% Similarity=0.432 Sum_probs=234.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC-CccceeccCCCCceeeEecCHHHHHHHHHccCCCcE
Q psy8372 341 FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419 (883)
Q Consensus 341 ~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g-a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rv 419 (883)
++.+++++++||.|++++|+|| .++||+||+||+|+++..++ +..|.+++...+..+||+||||+|+|+++++|++||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff-~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~v 79 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFL-DDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERV 79 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcE
Confidence 3678999999999999999999 68999999999997664332 456888655557888999999999999888999999
Q ss_pred EEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHH
Q psy8372 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISL 484 (883)
Q Consensus 420 f~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~ 484 (883)
||||||||+|+++++|+|||||||||++|.+++|+|+++|++|+++++. .+.||+||||.||+++
T Consensus 80 f~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~ 159 (329)
T cd00775 80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKE 159 (329)
T ss_pred EEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCccccCCCCceEEEHHHHHHH
Confidence 9999999999998877799999999999999999999999999999852 2368999999999998
Q ss_pred h-CCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCC
Q psy8372 485 Y-GSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSV 563 (883)
Q Consensus 485 y-g~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (883)
| |.+.. . .+.. .
T Consensus 160 ~~g~~~~---------~-~~~~---------------------------~------------------------------ 172 (329)
T cd00775 160 KTGIDFP---------E-LDLE---------------------------Q------------------------------ 172 (329)
T ss_pred HhCCCcc---------c-cccc---------------------------C------------------------------
Confidence 7 43210 0 0000 0
Q ss_pred ccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHH
Q psy8372 564 GCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAK 643 (883)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (883)
+. +.++.+-+
T Consensus 173 -------------------------------------------------------------------~~---~~~~~~~~ 182 (329)
T cd00775 173 -------------------------------------------------------------------PE---ELAKLLAK 182 (329)
T ss_pred -------------------------------------------------------------------CH---HHHHHHHH
Confidence 00 00000000
Q ss_pred HhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcc
Q psy8372 644 KAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLE 723 (883)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~ 723 (883)
. .+.+.++ .......+..+- ++.+++.
T Consensus 183 ~-------------------------------------~~~~~~~--------~~~~~~~l~~l~--------~~~ve~~ 209 (329)
T cd00775 183 L-------------------------------------IKEKIEK--------PRTLGKLLDKLF--------EEFVEPT 209 (329)
T ss_pred H-------------------------------------cCCCCCC--------CCCHHHHHHHHH--------HHHhccc
Confidence 0 0000000 001112222221 1334444
Q ss_pred cCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHH
Q psy8372 724 FDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQES 803 (883)
Q Consensus 724 l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~ 803 (883)
+..| +||+|||.. ..||+++.++|+.+ +++|||+++|+||+||++|+||+++|++
T Consensus 210 ~~~p-----~fi~~yP~~-----------~~~f~~~~~~~~~~---------~~rfdl~~~G~Ei~~G~~el~d~~e~~~ 264 (329)
T cd00775 210 LIQP-----TFIIDHPVE-----------ISPLAKRHRSNPGL---------TERFELFICGKEIANAYTELNDPFDQRE 264 (329)
T ss_pred cCCC-----EEEECCChH-----------hCcCcCcCCCCCCe---------eEEEEeEECCEEEEcccchhCCHHHHHH
Confidence 5444 899999987 79999987777554 5999999999999999999999999999
Q ss_pred HHHh------CCCCccc--HHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 804 ILHF------LNIETSS--LQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 804 ~~~~------~~~~~~~--~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
+|+. .+.++.. ++|||+|++||+|||||||||+|||+|+++|++|||||++||+++
T Consensus 265 r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 265 RFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 9954 2565543 689999999999999999999999999999999999999999985
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=513.32 Aligned_cols=291 Identities=25% Similarity=0.387 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC--CCCCCccceeccCC---CCceeeEecCHHHHHHHHHccCCCcEEEE
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKR--TPGGAREFVVPTHE---PNKFYSLVQSPQQLKQLLMVGSVDRYFQI 422 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--~~~ga~~f~v~~~~---~~~~~~L~~Spql~kq~l~~~~~~rvf~I 422 (883)
|++|+.|++++|+|| .++||+||+||+|+++ +.+|++.|.+.++. .++..||+||||+|+|+++++|++|||||
T Consensus 1 l~~rs~i~~~ir~~f-~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 1 LRARARLLAAIRAFF-AERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred ChHHHHHHHHHHHHH-HHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 478999999999999 6899999999999876 34678889998753 35678999999999998889999999999
Q ss_pred eeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhh
Q psy8372 423 ARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAI 502 (883)
Q Consensus 423 ~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~ 502 (883)
|||||||+++.+|+|||||||+|++|.|++|+|+++|+||++++..++.||+||||.||+++|..-.+ ..
T Consensus 80 gp~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~~~~~~~it~~ea~~~~~~~~~--------~~-- 149 (304)
T TIGR00462 80 CKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPFAPWERLSYQEAFLRYAGIDP--------LT-- 149 (304)
T ss_pred cCceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcEEEEHHHHHHHHhCCCc--------cc--
Confidence 99999999987667999999999999999999999999999999888889999999999998633110 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccch
Q psy8372 503 KEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQ 582 (883)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (883)
.
T Consensus 150 --~----------------------------------------------------------------------------- 150 (304)
T TIGR00462 150 --A----------------------------------------------------------------------------- 150 (304)
T ss_pred --C-----------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccc
Q psy8372 583 SEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEW 662 (883)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (883)
..+++.+++++.. . .
T Consensus 151 ---------------------------------------------------~~~~~~~~~~~~g-~------~------- 165 (304)
T TIGR00462 151 ---------------------------------------------------SLDELAAAAAAHG-V------R------- 165 (304)
T ss_pred ---------------------------------------------------CHHHHHHHHHHcC-C------C-------
Confidence 0011111222100 0 0
Q ss_pred cccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCC
Q psy8372 663 TNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFL 742 (883)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~ 742 (883)
+..++ +......+.++++ +++.+... .++||+|||..
T Consensus 166 ---------------------~~~~~------d~~~~~e~~l~~~------------ie~~~~~~---~p~fi~~yP~~- 202 (304)
T TIGR00462 166 ---------------------ASEED------DRDDLLDLLFSEK------------VEPHLGFG---RPTFLYDYPAS- 202 (304)
T ss_pred ---------------------CCCCC------ChhHHHHHHHHHH------------HHHhcCCC---CCEEEEcCccc-
Confidence 00000 0001122333332 22222110 35999999987
Q ss_pred CCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-------CCCCcccH
Q psy8372 743 PSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-------LNIETSSL 815 (883)
Q Consensus 743 ~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-------~~~~~~~~ 815 (883)
..||++++++|+.+ +++|||+++|+||+||++|+||+++|+++|+. .|+++..+
T Consensus 203 ----------~~~~~~~~~~~~~~---------~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~ 263 (304)
T TIGR00462 203 ----------QAALARISPDDPRV---------AERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPL 263 (304)
T ss_pred ----------cCcCccccCCCCCe---------eEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 68999988777654 58999999999999999999999999999955 78888887
Q ss_pred -HHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccC
Q psy8372 816 -QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAF 855 (883)
Q Consensus 816 -~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~F 855 (883)
+|||+|++||+|||||||||||||+|+++|++||||||+|
T Consensus 264 d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 264 DERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred hHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 6899999999999999999999999999999999999998
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=499.84 Aligned_cols=262 Identities=35% Similarity=0.617 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeece
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~F 426 (883)
+++||.|++++|+|| .++||+||+||+|+++.+ +|+..|.++++..|..+||+||||+|+|++++++++|||+|+|||
T Consensus 1 ~~~rs~i~~~ir~~f-~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~f 79 (269)
T cd00669 1 FKVRSKIIKAIRDFM-DDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNF 79 (269)
T ss_pred CcHHHHHHHHHHHHH-HHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecce
Confidence 478999999999999 689999999999987655 566679998776688999999999999998889999999999999
Q ss_pred ecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCC
Q psy8372 427 RDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQP 506 (883)
Q Consensus 427 R~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~ 506 (883)
|+|..+.+|++||||+|+|++|.|++|+|+++|+||+++++.+... +...+ +. ...+ ++ .
T Consensus 80 R~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~-----~~~~~---~~---------~~~~-~~--~ 139 (269)
T cd00669 80 RNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGV-----TAVTY---GF---------ELED-FG--L 139 (269)
T ss_pred eCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcc-----ccccc---cc---------cccc-cC--C
Confidence 9997777777999999999999999999999999999997653210 00000 00 0000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhh
Q psy8372 507 PWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEIC 586 (883)
Q Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (883)
+ |
T Consensus 140 ~-------------------------~----------------------------------------------------- 141 (269)
T cd00669 140 P-------------------------F----------------------------------------------------- 141 (269)
T ss_pred C-------------------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred ccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccc
Q psy8372 587 SRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL 666 (883)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (883)
.+...+
T Consensus 142 --------------------------------------------~rit~~------------------------------ 147 (269)
T cd00669 142 --------------------------------------------PRLTYR------------------------------ 147 (269)
T ss_pred --------------------------------------------eEeeHH------------------------------
Confidence 000000
Q ss_pred cccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC
Q psy8372 667 TKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS 746 (883)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~ 746 (883)
+.++ .+. +++||+|||..
T Consensus 148 ---------------------------------------------------ea~~-~~~-----~p~fi~d~P~~----- 165 (269)
T cd00669 148 ---------------------------------------------------EALE-RYG-----QPLFLTDYPAE----- 165 (269)
T ss_pred ---------------------------------------------------HHHH-HhC-----CceEEECCCcc-----
Confidence 0000 011 34899999986
Q ss_pred CCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHH
Q psy8372 747 GTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQA 821 (883)
Q Consensus 747 ~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a 821 (883)
.+|| +++.++++.+ +++|||+++|+||+|||+|+||+++|+++|+..+++++ .++|||+|
T Consensus 166 ------~~~fy~~~~~~~~~~---------~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a 230 (269)
T cd00669 166 ------MHSPLASPHDVNPEI---------ADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKA 230 (269)
T ss_pred ------cCCCCCCcCCCCCCe---------EEEEEEeeCCEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHH
Confidence 3555 7776666544 59999999999999999999999999999999999998 89999999
Q ss_pred hhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 822 FKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 822 ~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
++||+|||||||||||||+|+++|++|||||++|||+.
T Consensus 231 ~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 231 LEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred HHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999999999999999999985
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=473.52 Aligned_cols=327 Identities=29% Similarity=0.434 Sum_probs=261.1
Q ss_pred ccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcC
Q psy8372 294 WGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVET 373 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~T 373 (883)
...+++|+.++++.+++....+||...+ ..+.+.+| +.-||+.|+....+++|+||.+..+++.|| ++++|++|+|
T Consensus 81 ~~~q~iel~~eki~~vG~v~~~ypl~Kk--~lt~e~LR-~~~HLR~Rt~~~~av~RvRs~~~~a~h~ff-q~~~F~~i~t 156 (446)
T KOG0554|consen 81 GAKQQIELNAEKIKVVGTVDESYPLQKK--KLTPEMLR-DKLHLRSRTAKVGAVLRVRSALAFATHSFF-QSHDFTYINT 156 (446)
T ss_pred chheeeeeeeeEEEEEeecCCCCCCccc--cCCHHHHh-hcccccchhhHHHHHHHHHHHHHHHHHHHH-HHcCceEecC
Confidence 3567899999999999999777776543 34556666 899999999999999999999999999999 7999999999
Q ss_pred CeeccCCCCCCcc-ceeccC------CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccc
Q psy8372 374 PTLFKRTPGGARE-FVVPTH------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIE 445 (883)
Q Consensus 374 P~l~~~~~~ga~~-f~v~~~------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e 445 (883)
|+|+.++|+||++ |.|... .+|++.||+.|.||+++. |++++.|||.+||+||+|++++.|| .||||+|.|
T Consensus 157 PiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE 235 (446)
T KOG0554|consen 157 PIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAE 235 (446)
T ss_pred cEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhhhH
Confidence 9999999999987 877432 358889999999999995 7899999999999999999999998 999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHHHhccC---------------------------CCCceeeehHHHHHHhCCCCCCccccch
Q psy8372 446 LSFTT-RDDVMRLIEELLCYCLNIP---------------------------TRTFSRISYNDAISLYGSDKPDLRYDCK 497 (883)
Q Consensus 446 ~~~~~-~~dvm~~~E~li~~i~~~~---------------------------~~~f~rity~ea~~~yg~~~~d~r~~~~ 497 (883)
++|++ ++|.|+++|++++++++.+ +.+|.||||.||++.
T Consensus 236 ~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~------------- 302 (446)
T KOG0554|consen 236 LAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIEL------------- 302 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHH-------------
Confidence 99999 9999999999999998652 112223333333332
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccc
Q psy8372 498 IMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSC 577 (883)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (883)
T Consensus 303 -------------------------------------------------------------------------------- 302 (446)
T KOG0554|consen 303 -------------------------------------------------------------------------------- 302 (446)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEec
Q psy8372 578 LHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQ 657 (883)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (883)
++++.+. +.+
T Consensus 303 ----------------------------------------------------------------L~~a~t~------~fk 312 (446)
T KOG0554|consen 303 ----------------------------------------------------------------LQKAVTK------KFK 312 (446)
T ss_pred ----------------------------------------------------------------HHHhccc------ccc
Confidence 1111000 000
Q ss_pred CcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEe
Q psy8372 658 DSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD 737 (883)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~d 737 (883)
...+|..+|++ ..+..| -.+ .... +++|+|
T Consensus 313 ~~~kwG~~l~~------------------------------ehe~yL---~~~------------~~~~-----PVfV~d 342 (446)
T KOG0554|consen 313 TPPKWGIDLST------------------------------EHEKYL---VEE------------CFKK-----PVFVTD 342 (446)
T ss_pred cCcccccccch------------------------------hhHHHH---HHH------------hcCC-----CEEEEe
Confidence 00113222110 011111 111 1223 499999
Q ss_pred cCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHH
Q psy8372 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQ 816 (883)
Q Consensus 738 fPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~ 816 (883)
||.- ..||+|...+|.+.. .+|||+++|+ |++|||+|+.+ .++++..|+.+++++
T Consensus 343 YP~~-----------iKpFYMr~n~~~~tV---------aa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~e 398 (446)
T KOG0554|consen 343 YPKG-----------IKPFYMRLNDDGKTV---------AAFDLLVPGVGELIGGSLREER----KARLKERGLTREELE 398 (446)
T ss_pred cccc-----------ccceEEEecCCCCee---------EEEEeecccchhhcCcccchhh----HHHHHhcCCCccccc
Confidence 9997 899999887775532 7999999997 99999999999 778899999999999
Q ss_pred HHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 817 HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 817 ~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
|||+.+|||.+||||||||+||++.+++|.+||||||+|||.....
T Consensus 399 WYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~ 444 (446)
T KOG0554|consen 399 WYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSA 444 (446)
T ss_pred eehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccc
Confidence 9999999999999999999999999999999999999999986554
|
|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=471.99 Aligned_cols=291 Identities=24% Similarity=0.382 Sum_probs=224.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCC--ccceeccC----CCCceeeEecCHHHHHHHHHccCCCc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA--REFVVPTH----EPNKFYSLVQSPQQLKQLLMVGSVDR 418 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga--~~f~v~~~----~~~~~~~L~~Spql~kq~l~~~~~~r 418 (883)
..+|++|+.|++++|+|| .++||+||+||+|+....+|+ .+|.+.++ ..++.+||+||||+++|++++++++|
T Consensus 2 ~~~l~~r~~i~~~ir~~f-~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~r 80 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFF-ADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGP 80 (306)
T ss_pred hHHHHHHHHHHHHHHHHH-HHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccc
Confidence 478999999999999999 689999999999976655554 34777655 34688899999999999888889999
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchh
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKI 498 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~ 498 (883)
||+||||||+|++.++|++||||||||++|.|++|+|+++|+||++++.. .||++|||.||+++|....+
T Consensus 81 vf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~--~~~~~i~~~eaf~~~~g~~~-------- 150 (306)
T PRK09350 81 IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--EPAESLSYQQAFLRYLGIDP-------- 150 (306)
T ss_pred eEEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc--CCceEEEHHHHHHHHhCCCC--------
Confidence 99999999999996666699999999999999999999999999999976 68999999999998732111
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhccccc
Q psy8372 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCL 578 (883)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (883)
+. .
T Consensus 151 ---~~-~------------------------------------------------------------------------- 153 (306)
T PRK09350 151 ---LS-A------------------------------------------------------------------------- 153 (306)
T ss_pred ---Cc-C-------------------------------------------------------------------------
Confidence 00 0
Q ss_pred ccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecC
Q psy8372 579 HTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD 658 (883)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
+ .+++++.+++ .|
T Consensus 154 ----------------------------------------------------~---~~~~~~~~~~-~g----------- 166 (306)
T PRK09350 154 ----------------------------------------------------D---KTQLREVAAK-LG----------- 166 (306)
T ss_pred ----------------------------------------------------C---HHHHHHHHHH-cC-----------
Confidence 0 0011111111 00
Q ss_pred cccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEec
Q psy8372 659 SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDF 738 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~df 738 (883)
. +|.. . ..+.-.+.+..+-. ..+|+.+... .++||+||
T Consensus 167 -------------------------~--~~~~--~--~~~~~~~~~~~l~~--------~~ve~~l~~~---~p~fi~~y 204 (306)
T PRK09350 167 -------------------------L--SNIA--D--EEEDRDTLLQLLFT--------FGVEPNIGKE---KPTFVYHF 204 (306)
T ss_pred -------------------------C--CCcC--C--CCCCHHHHHHHHHH--------HHHHHhcCCC---CCEEEEcC
Confidence 0 0000 0 00011112222221 2223333221 35999999
Q ss_pred CCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-------CCCC
Q psy8372 739 PLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-------LNIE 811 (883)
Q Consensus 739 Pl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-------~~~~ 811 (883)
|.. ..||++++++|+.+ +++|||+++|+||+||++|+||+++|+++|+. .|++
T Consensus 205 P~~-----------~~~~a~~~~~~~~~---------~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~ 264 (306)
T PRK09350 205 PAS-----------QAALAKISTEDHRV---------AERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLP 264 (306)
T ss_pred ccc-----------cCccccccCCCCCe---------eEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCC
Confidence 987 68999988877655 58999999999999999999999999999964 7888
Q ss_pred cccH-HHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 812 TSSL-QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 812 ~~~~-~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
+..+ ++||+|++||+|||||+|||||||+|+++|++|||||
T Consensus 265 ~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 265 QQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred cccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 8888 5799999999999999999999999999999999997
|
|
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=437.31 Aligned_cols=328 Identities=27% Similarity=0.427 Sum_probs=269.5
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~ 372 (883)
+...+++|+.++-+++++.+... .+...-...++.+..|++|||-+|....++++++|+.+++++|++| .+.|++||.
T Consensus 189 K~apgghEl~vdy~Eiig~Apag-~~~n~lne~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y-~~~~ytEVt 266 (545)
T KOG0555|consen 189 KSAPGGHELNVDYWEIIGLAPAG-GFDNPLNEESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHY-FERGYTEVT 266 (545)
T ss_pred CCCCCCceEEeeeeeeecccCCC-cccccccccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHH-HhcCceecC
Confidence 44567899999999999998432 2222111245678889999999999999999999999999999999 789999999
Q ss_pred CCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC
Q psy8372 373 TPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT 450 (883)
Q Consensus 373 TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~ 450 (883)
+|+|++.. +||+..|+.+|. |+.+||+||+|||++.+ ...+++||+|+++||+|.++|+|| .||||+|+|++|.+
T Consensus 267 PPtmVQTQVEGGsTLFkldYy--GEeAyLTQSSQLYLEtc-lpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~aflt 343 (545)
T KOG0555|consen 267 PPTMVQTQVEGGSTLFKLDYY--GEEAYLTQSSQLYLETC-LPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLT 343 (545)
T ss_pred CCceEEEEecCcceEEeeccc--CchhhccchhHHHHHHh-hhhcCceeEecHhhhhhhhhhhhhhhhheeeeeeccccc
Confidence 99999985 788889999976 78889999999999975 577999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc-------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI-------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSG 511 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~-------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~ 511 (883)
++++|+.+|+||+..+.. +++||+||.|+|||+.+... + +...
T Consensus 344 fd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~-----------~-vk~e------ 405 (545)
T KOG0555|consen 344 FDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEH-----------D-VKKE------ 405 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhc-----------C-CcCc------
Confidence 999999999999987654 56789999999999974321 1 1000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccc
Q psy8372 512 YPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFR 591 (883)
Q Consensus 512 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (883)
+ ++++
T Consensus 406 -----------------d----------------------------------g~~f------------------------ 410 (545)
T KOG0555|consen 406 -----------------D----------------------------------GTDF------------------------ 410 (545)
T ss_pred -----------------c----------------------------------Cccc------------------------
Confidence 0 1111
Q ss_pred eeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCC
Q psy8372 592 TTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILP 671 (883)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (883)
..|.|+ |
T Consensus 411 ---------------------efGdDI------~---------------------------------------------- 417 (545)
T KOG0555|consen 411 ---------------------EFGDDI------P---------------------------------------------- 417 (545)
T ss_pred ---------------------ccccch------h----------------------------------------------
Confidence 012221 0
Q ss_pred hhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccc
Q psy8372 672 DLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLES 751 (883)
Q Consensus 672 ~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~ 751 (883)
+.+++.+- + .+.. +++++.||..
T Consensus 418 --------------------------eAaER~mt------------d----tIg~-----PIfLtrFpve---------- 440 (545)
T KOG0555|consen 418 --------------------------EAAERKMT------------D----TIGV-----PIFLTRFPVE---------- 440 (545)
T ss_pred --------------------------hHHHHhhh------------h----hcCC-----ceEEeecccc----------
Confidence 00111000 1 1222 4899999997
Q ss_pred cccCcCCCC-CCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC
Q psy8372 752 AHHPFTQPH-PEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH 829 (883)
Q Consensus 752 ~h~PFt~p~-~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh 829 (883)
|.+|+|+. .+|..++ ++.|++++|+ ||.|||+||.|.+++.+.|+.-|+|+..|-||++..+||.-||
T Consensus 441 -iKsFYM~rc~dd~~lT---------ESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pH 510 (545)
T KOG0555|consen 441 -IKSFYMKRCEDDPRLT---------ESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPH 510 (545)
T ss_pred -ccceeeecccCccccc---------eeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCC
Confidence 99998875 5666654 8999999997 9999999999999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHhCCCCccccccCCCC
Q psy8372 830 GGIALGIDRLMSILCGTQSIRDVIAFPKG 858 (883)
Q Consensus 830 gG~glGldRlvm~l~~~~sIRdvi~FPk~ 858 (883)
||.|||+||++||||+.-+||||.+|||-
T Consensus 511 GGyGLGlERfL~wL~~r~~vre~cLyPRf 539 (545)
T KOG0555|consen 511 GGYGLGLERFLAWLCDRYHVREVCLYPRF 539 (545)
T ss_pred CcccccHHHHHHHHhcccchhheeecchh
Confidence 99999999999999999999999999985
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=363.74 Aligned_cols=294 Identities=26% Similarity=0.346 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCc--cceeccC----CCCceeeEecCHHHHHHHHHccCCCc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAR--EFVVPTH----EPNKFYSLVQSPQQLKQLLMVGSVDR 418 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~--~f~v~~~----~~~~~~~L~~Spql~kq~l~~~~~~r 418 (883)
...+..|+.|+++||.|| .++||+||+||.|+.+....+. .|.+.+. .+++..||++|||++.|.|+++|-.+
T Consensus 13 ~~~ll~Ra~i~~~iR~FF-~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 13 IDNLLKRAAIIAAIRRFF-AERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCc
Confidence 456899999999999999 6899999999999776433332 3555433 34678999999999988889999999
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHh-CCCCCCccccch
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLY-GSDKPDLRYDCK 497 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~y-g~~~~d~r~~~~ 497 (883)
+|||++|||||+.+..|||||||||||.++.|+.-+|+.+.+|++.++.+. +++++||+||+.+| |.|..
T Consensus 92 ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~--~~E~ls~~eaF~r~~gid~l------- 162 (322)
T COG2269 92 IFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECV--EAERLSYQEAFLRYLGIDPL------- 162 (322)
T ss_pred chhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccC--CcceeeHHHHHHHHhCCCcc-------
Confidence 999999999999999999999999999999999999999999999999884 59999999999997 33210
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccc
Q psy8372 498 IMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSC 577 (883)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (883)
.
T Consensus 163 -----~-------------------------------------------------------------------------- 163 (322)
T COG2269 163 -----S-------------------------------------------------------------------------- 163 (322)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred cccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEec
Q psy8372 578 LHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQ 657 (883)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (883)
.....|.+.+++.
T Consensus 164 -------------------------------------------------------~~~~~L~~~~~~~------------ 176 (322)
T COG2269 164 -------------------------------------------------------ADKTELREAAAKL------------ 176 (322)
T ss_pred -------------------------------------------------------ccHHHHHHHHHhc------------
Confidence 0011122222210
Q ss_pred CcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEe
Q psy8372 658 DSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD 737 (883)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~d 737 (883)
++. ....++-.+.+-.|. ...+|+++... ++++|.|
T Consensus 177 -------------------------~l~--------~~~~~~~d~L~~~lf--------~~~VEP~lg~~---rpt~ly~ 212 (322)
T COG2269 177 -------------------------GLS--------AATDEDWDTLLQLLF--------VEGVEPNLGKE---RPTFLYH 212 (322)
T ss_pred -------------------------CCC--------CCCccCHHHHHHHHH--------HhhcCcccCCC---CceEEEe
Confidence 000 000011111121111 24455555433 4589999
Q ss_pred cCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-------CCC
Q psy8372 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-------LNI 810 (883)
Q Consensus 738 fPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-------~~~ 810 (883)
||.. .-..++++++|+.. +++|+|++.|+|++||+-++.|+.+|+++|+. .|+
T Consensus 213 fP~~-----------qaaLA~i~~~D~rV---------AERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l 272 (322)
T COG2269 213 FPAS-----------QAALAQISTGDPRV---------AERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGL 272 (322)
T ss_pred CcHH-----------HHHhhccCCCCcch---------hhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 9986 34577888888755 69999999999999999999999999999943 222
Q ss_pred Ccc-cHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 811 ETS-SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 811 ~~~-~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
+.- -.++||.|+.. |||.+|+|||+|||||+++|..+|-|||+||...
T Consensus 273 ~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 273 PQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred CCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 222 25799999999 9999999999999999999999999999999753
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-25 Score=223.69 Aligned_cols=209 Identities=49% Similarity=0.804 Sum_probs=170.1
Q ss_pred hhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 82 ~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
...||+.+.+||+..+++.+++++||..++..|.+.++.||..+..... ......+.||.|||.|+.+..++...+.+|
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~V 81 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEV 81 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEE
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEe
Confidence 3579999999999999999999999999999999999999999865422 223467999999999999999988888899
Q ss_pred EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
..||+++..++.|++.......+..++++..++++.|.. ++||+|++.|++.|++|+++.++|+++...|+|+|.+++
T Consensus 82 DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~--~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 82 DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE--GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T--T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC--CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 999999999999998877645566789999999998765 699999999999999999999999999999999999999
Q ss_pred EecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCcccccc
Q psy8372 241 KDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWE 292 (883)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~el~~ 292 (883)
-++........++..+.+..|+...+.++|++||++++.++.+..+|.++++
T Consensus 160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~p 211 (218)
T PF05891_consen 160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYP 211 (218)
T ss_dssp EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-E
T ss_pred EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceE
Confidence 9999887767899999999999999999999999999999999999988763
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-18 Score=179.27 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||||.++..++... .. +|+|+|+|+.|++.|+++.......+++++++|+++++..+ ++||+|+|.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--~sfD~v~~~ 123 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--NSFDAVTCS 123 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--T-EEEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--CceeEEEHH
Confidence 467899999999999998777653 32 89999999999999999998776668899999999988755 899999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------------------ccc---------CCcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------------EYD---------DEDSSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------------------~~~---------~~~~~~~~s~ 263 (883)
..++++++ +.+.+++++|+|||||.+++.++....... .+. ...-....+.
T Consensus 124 fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~ 201 (233)
T PF01209_consen 124 FGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSP 201 (233)
T ss_dssp S-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------
T ss_pred hhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccc
Confidence 99999977 889999999999999999999877544210 000 0011122366
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
+++.++++++||+.+..+.
T Consensus 202 ~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 202 EELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 7899999999999876543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=172.00 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
+..+.+.++..+.. .+|.+|||||||||.++..+++.... +|+|+|+|+.|++.|+++........++|+.+|+
T Consensus 36 ~~~Wr~~~i~~~~~-----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA 110 (238)
T COG2226 36 HRLWRRALISLLGI-----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110 (238)
T ss_pred hHHHHHHHHHhhCC-----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech
Confidence 44555666666532 37899999999999999988776433 8999999999999999999986555589999999
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------------------ccC
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------------------YDD 254 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------------------~~~ 254 (883)
+++++++ ++||+|.+...|+++++ +..+|++++|+|||||++++.+......... +..
T Consensus 111 e~LPf~D--~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~ 186 (238)
T COG2226 111 ENLPFPD--NSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVA 186 (238)
T ss_pred hhCCCCC--CccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeee
Confidence 9998766 89999999999999977 8899999999999999999998775433100 000
Q ss_pred Ccc----------cccccchhhhhhhhhccccccc
Q psy8372 255 EDS----------SVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 255 ~~~----------~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+. ....+.+++.+.+.++||+.+.
T Consensus 187 ~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 187 KDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred cChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 011 1113556888888888888776
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=171.08 Aligned_cols=146 Identities=20% Similarity=0.117 Sum_probs=112.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhh---ccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILK---DCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.|+++... ....+++++++|+.+++... ++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~--~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD--CYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC--CCEeEE
Confidence 46789999999999999877765 33 2799999999999999887542 12345688999998876544 689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------c-c-----------cCCc--------ccccc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------E-Y-----------DDED--------SSVVR 261 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~-~-----------~~~~--------~~~~~ 261 (883)
+++.++||+++ +..++++++|+|||||++++.++....... . + ...+ .....
T Consensus 150 ~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~ 227 (261)
T PLN02233 150 TMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYL 227 (261)
T ss_pred EEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcC
Confidence 99999999976 889999999999999999999877543210 0 0 0000 01234
Q ss_pred cchhhhhhhhhcccccccccC
Q psy8372 262 SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+.+++.++++++||+.+....
T Consensus 228 s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 228 TGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred CHHHHHHHHHHCCCCEEEEEE
Confidence 778999999999999886543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=169.52 Aligned_cols=146 Identities=21% Similarity=0.184 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++....+. ..++++.+|+.+++... ++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED--GQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC--CCccEEEECC
Confidence 46789999999999999988776444799999999999999998776543 45789999998876543 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---c--------c----CCcccccccchhhhhhhhhcccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---Y--------D----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---~--------~----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+++|+++ ...++++++++|||||.+++.++........ + . ......+.+..++..+++++||.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 9999976 7799999999999999999988654321100 0 0 00001123677999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 273 ~v~~~d 278 (340)
T PLN02244 273 DIKTED 278 (340)
T ss_pred eeEeee
Confidence 876543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=168.52 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++..... ...++++++++.+++... ++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~--~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG--RKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc--CCCCEEEEhhH
Confidence 567999999999999987777655 59999999999999998765432 235688999988775433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---------cc---ccC--Ccccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------NE---YDD--EDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---------~~---~~~--~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|+++ +..++++++++|||||.+++.+....... +. ... ..+....+++++..+++++||+++
T Consensus 208 LeHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 208 IEHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HHhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 999977 78999999999999999999987643210 00 111 112224578899999999999998
Q ss_pred cccCC
Q psy8372 279 KSEKG 283 (883)
Q Consensus 279 ~~~~~ 283 (883)
...-.
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 76443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=161.66 Aligned_cols=159 Identities=20% Similarity=0.307 Sum_probs=118.8
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
.......++..+. ..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+...|+.
T Consensus 37 g~~~~~~~l~~l~-----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~ 109 (263)
T PTZ00098 37 GIEATTKILSDIE-----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDIL 109 (263)
T ss_pred chHHHHHHHHhCC-----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcc
Confidence 3445566666652 257789999999999999877665334799999999999999998653 345678888887
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---cc---CCcccccccchhhh
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---YD---DEDSSVVRSLPQFC 267 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---~~---~~~~~~~~s~~~~~ 267 (883)
+.+... ++||+|++..+++|++.+++..++++++++|||||.+++.++........ +. ........+..++.
T Consensus 110 ~~~~~~--~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 110 KKDFPE--NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYG 187 (263)
T ss_pred cCCCCC--CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 654433 68999999999999976678999999999999999999998764432110 00 01111234677999
Q ss_pred hhhhhccccccccc
Q psy8372 268 LLFSKANLKCVKSE 281 (883)
Q Consensus 268 ~l~~~aGf~vv~~~ 281 (883)
.+++++||+.+...
T Consensus 188 ~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 188 DLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHCCCCeeeEE
Confidence 99999999987554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-15 Score=151.46 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++........+++...|+.++... ++||+|+|+.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD---GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC---CCcCEEEEecch
Confidence 457999999999999998888866 5999999999999999988776555567888888766442 479999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
||+++++...++++++++|||||++++.......... . .....+..+..++...|+ ||+++....
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-~-~~~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-C-TVGFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-C-CCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 9998777899999999999999996654432221111 0 111223346667888886 788766543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=147.90 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~ 197 (883)
..+++..+... ..++.+|||||||+|.++..+...+. +|+|+|+|+.+++. ........+......
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhc
Confidence 34455555421 25678999999999999998877766 69999999999988 111223332222222
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC------cccccC--Ccccccccchhhhhh
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV------KNEYDD--EDSSVVRSLPQFCLL 269 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~------~~~~~~--~~~~~~~s~~~~~~l 269 (883)
.+++||+|+|+.+|+|+++ +..++++++++|||||++++.++..... ...+.. ..+..+.+..++..+
T Consensus 75 --~~~~fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (161)
T PF13489_consen 75 --PDGSFDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQL 150 (161)
T ss_dssp --HSSSEEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHH
T ss_pred --cccchhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHH
Confidence 2369999999999999976 8899999999999999999999875320 011111 134456688999999
Q ss_pred hhhccccccc
Q psy8372 270 FSKANLKCVK 279 (883)
Q Consensus 270 ~~~aGf~vv~ 279 (883)
++++||+++.
T Consensus 151 l~~~G~~iv~ 160 (161)
T PF13489_consen 151 LEQAGFEIVE 160 (161)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 9999999875
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=153.71 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=115.9
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEE
Q psy8372 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 129 ~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.....+|++|||||||+|.++.+++.....+|+|+++|+++.+.+++++...+.. ++++.-.|..++. +.||-|
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-----e~fDrI 141 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-----EPFDRI 141 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----ccccee
Confidence 3445789999999999999999888885346999999999999999998887654 5666666665543 469999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-ccc------CCcccccccchhhhhhhhhcccccccc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYD------DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-~~~------~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+|..+++|+..+....+++.++++|+|||.+++.+........ ... -..++...+.........++||.+...
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~ 221 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDV 221 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence 9999999999888999999999999999999998876544222 000 122334445667777788888887654
Q ss_pred cC
Q psy8372 281 EK 282 (883)
Q Consensus 281 ~~ 282 (883)
+.
T Consensus 222 ~~ 223 (283)
T COG2230 222 ES 223 (283)
T ss_pred hh
Confidence 43
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=154.08 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=112.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++... .. +|+|+|+|+.|++.|+++........++++.+|+.+++.. +++||+|++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~ 121 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD--DNSFDYVTIG 121 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC--CCCccEEEEe
Confidence 467899999999999998777653 32 7999999999999999988765555678899998876543 3689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-------cc---C-----------------Ccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------YD---D-----------------EDSSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-------~~---~-----------------~~~~~~~s~ 263 (883)
.+++|+++ +..+++++.++|+|||.+++.+......... +. . .......+.
T Consensus 122 ~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (231)
T TIGR02752 122 FGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGM 199 (231)
T ss_pred cccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCH
Confidence 99999976 7899999999999999999887654322100 00 0 001112356
Q ss_pred hhhhhhhhhcccccccccCC
Q psy8372 264 PQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~~ 283 (883)
+++.++++++||+.+.....
T Consensus 200 ~~l~~~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 200 DELAEMFQEAGFKDVEVKSY 219 (231)
T ss_pred HHHHHHHHHcCCCeeEEEEc
Confidence 78899999999998765443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=158.79 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..++..|+|+|+|+.|+.+++...... ....+.+...++.+++.. .+||+|+|..
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD~V~s~g 196 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFDTVFSMG 196 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcCEEEEcc
Confidence 457899999999999998888888778999999999998765432211 223456677787776543 3899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-------ccC-CcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------YDD-EDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-------~~~-~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|+++ +..+|++++++|||||.|++.+....+.... +.. .+..+..+..++..+++++||+.+....
T Consensus 197 vL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 197 VLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred hhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 9999976 8899999999999999999987543322111 110 1112334677999999999999886543
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=156.66 Aligned_cols=190 Identities=17% Similarity=0.149 Sum_probs=115.0
Q ss_pred hHHHHHHHHhhhcCCCccccccccCCCccccch-HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEE
Q psy8372 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDI-QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 161 (883)
Q Consensus 83 ~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~-~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~ 161 (883)
..+|+.+.++|............+|-....... +...+.++.+. ......+|.+|||||||.|.++..++.+...+|+
T Consensus 11 ~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~-~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~ 89 (273)
T PF02353_consen 11 SAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLC-EKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVT 89 (273)
T ss_dssp HHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHH-TTTT--TT-EEEEES-TTSHHHHHHHHHH--EEE
T ss_pred HHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHH-HHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEE
Confidence 456776666666543332222222212122222 22333334433 3344578999999999999999999988333699
Q ss_pred EEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 162 LLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 162 gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
|+.+|+.+.+.|++++...+. ..+++...|..+++ .+||.|+|..+++|+..++...+++++.++|||||.+++
T Consensus 90 gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-----~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 90 GITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-----GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp EEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred EEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999987754 35677777776543 389999999999999877799999999999999999999
Q ss_pred EecccCCCcccc---------c--CCcccccccchhhhhhhhhcccccc
Q psy8372 241 KDNVASGVKNEY---------D--DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 241 ~~~~~~~~~~~~---------~--~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
............ . -..++...+..++...++++||++.
T Consensus 165 q~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~ 213 (273)
T PF02353_consen 165 QTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVE 213 (273)
T ss_dssp EEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEE
T ss_pred EecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEE
Confidence 876643321110 0 1122333455666667777777765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-15 Score=155.38 Aligned_cols=108 Identities=26% Similarity=0.301 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||||||-|.++..++..|+. |+|+|+|+.+++.|+.++.+.+.. +++.+..++++.... ++||+|+|..|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~-VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~--~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG--GQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCe-eEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC--CCccEEEEhhHH
Confidence 6889999999999999999999965 999999999999999998876544 356677777665443 699999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
+|+++ +..+++.+.+++||||.+++++.+.+.
T Consensus 135 EHv~d--p~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 135 EHVPD--PESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred HccCC--HHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 99977 779999999999999999999987543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=157.88 Aligned_cols=134 Identities=21% Similarity=0.296 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|+++ .++++++|+.++.+ .++||+|+|+.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~fD~v~~~~ 97 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDTDVVVSNA 97 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCceEEEEeh
Confidence 46789999999999999988877433 799999999999999763 24788899887642 25899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC-cc----------ccc----CC---cccccccchhhhhhhhhc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-KN----------EYD----DE---DSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~-~~----------~~~----~~---~~~~~~s~~~~~~l~~~a 273 (883)
++||+++ +..++++++++|||||.+++..+..... .. .+. .. ......+..++.++++++
T Consensus 98 ~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a 175 (255)
T PRK14103 98 ALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA 175 (255)
T ss_pred hhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC
Confidence 9999976 7899999999999999999975431110 00 000 00 011223667888889999
Q ss_pred ccccc
Q psy8372 274 NLKCV 278 (883)
Q Consensus 274 Gf~vv 278 (883)
||.+.
T Consensus 176 Gf~v~ 180 (255)
T PRK14103 176 GCKVD 180 (255)
T ss_pred CCeEE
Confidence 98754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=155.75 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=109.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++....+. .+++++++|+.++.+.. +++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-ETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-CCCCCEEEehh
Confidence 3567999999999999998888765 599999999999999998876543 45678888887764322 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-------------cccc-----CCcccccccchhhhhhhhhc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-------------NEYD-----DEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-------------~~~~-----~~~~~~~~s~~~~~~l~~~a 273 (883)
+++|+.+ +..++++++++|||||++++...+..... ..+. ........+++++.++++++
T Consensus 121 vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a 198 (255)
T PRK11036 121 VLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA 198 (255)
T ss_pred HHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHC
Confidence 9999966 77999999999999999998765533210 0000 00011234567899999999
Q ss_pred cccccc
Q psy8372 274 NLKCVK 279 (883)
Q Consensus 274 Gf~vv~ 279 (883)
||+++.
T Consensus 199 Gf~~~~ 204 (255)
T PRK11036 199 GWQIMG 204 (255)
T ss_pred CCeEee
Confidence 999864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=129.94 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=79.9
Q ss_pred EEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccCh
Q psy8372 139 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 139 LDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
||+|||+|..+..+++.+..+|+|+|+|+.+++.++++.... ...+...|+.+++... ++||+|++..+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~--~sfD~v~~~~~~~~~~- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD--NSFDVVFSNSVLHHLE- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T--T-EEEEEEESHGGGSS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc--ccccccccccceeecc-
Confidence 899999999999888884557999999999999999987643 2348999999986554 7999999999999994
Q ss_pred HHHHHHHHHHHHHhccCcEEEE
Q psy8372 219 EDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 219 ed~~~~l~~~~r~LKPGG~lvi 240 (883)
++..++++++|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 489999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=132.63 Aligned_cols=106 Identities=22% Similarity=0.278 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccC-CCCCCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGI-QDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~-~~~~~~~~~~~FDlVvs~ 210 (883)
|+.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.|+++.... ...++++++.|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF---LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT---SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc---CCCCCEEEEC
Confidence 4679999999999999988883 3336999999999999999999433 456779999999 33332 2479999999
Q ss_pred c-cccccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 W-VLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~-vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. +++++.. ++...+++++++.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 6665543 568899999999999999999986
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=158.41 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=110.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||||||+|.++..++..++..|+|+|+|+.|+..++...... ...++.++.+++.+++. +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCCcCEEEECCh
Confidence 56799999999999999888888778999999999998765543222 13356888889888765 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cccCC-cccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDE-DSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~~~-~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++|+.+ +..++++++++|+|||.+++.+....+... .+... ...+..+..++..+++++||+.+....
T Consensus 199 l~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 199 LYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 999966 889999999999999999998654332211 01111 112234778999999999999886643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-14 Score=143.92 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+.. +.+...|+..... +++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~---~~~fD~I~~~~~~ 104 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL---NEDYDFIFSTVVF 104 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc---cCCCCEEEEeccc
Confidence 456999999999999998888776 5999999999999999887655433 4566677654433 2589999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
||++.++...++++++++|||||++++.+...... . .......+..+..++.++|. +|+++....
T Consensus 105 ~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~-~~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 105 MFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-Y-PCHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-C-CCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 99987778899999999999999977665432211 0 11112234456778888886 477765543
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-14 Score=147.20 Aligned_cols=141 Identities=20% Similarity=0.214 Sum_probs=108.1
Q ss_pred eEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++....+ ...+++...|+...+. +++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehHHHHH
Confidence 799999999999988887753 379999999999999999887653 3456788888765432 25899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
|+++ ...++++++++|||||.+++.++...............+..+..+|.+++.++||+++....
T Consensus 79 ~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 79 HIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred hCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 9976 78999999999999999999886532211111111222344677999999999999875543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=152.05 Aligned_cols=119 Identities=20% Similarity=0.342 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+...+..+++.+.. .+..+|||+|||+|.++..+...+ .+|+|+|+|+.|++.|+++... ..++++|+
T Consensus 26 ~q~~~a~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-----~~~~~~d~ 94 (251)
T PRK10258 26 LQRQSADALLAMLPQ-----RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-----DHYLAGDI 94 (251)
T ss_pred HHHHHHHHHHHhcCc-----cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-----CCEEEcCc
Confidence 344455555555421 346799999999999998777665 4699999999999999887542 35788898
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.+++... ++||+|+++.+++++++ +..++.++.++|||||.++++++...
T Consensus 95 ~~~~~~~--~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 95 ESLPLAT--ATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ccCcCCC--CcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 8765443 68999999999999966 88999999999999999999986543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-14 Score=138.02 Aligned_cols=109 Identities=29% Similarity=0.328 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+.+|||+|||+|.++..++.. +. .+++|+|+|+.|++.|++++......++++.+.|+.+++.. .++.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEEc
Confidence 35779999999999999988843 33 37999999999999999998877666889999999996532 22589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|+++ +..+++++.++|++||.+++.++.
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999976 779999999999999999999876
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-14 Score=148.94 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CC-CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~-~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+|||||||+|..+..++.. .. .+|+|+|+|+.|++.|+++..... ...++++++|+.+++. ..+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEEe
Confidence 46789999999999998877663 22 279999999999999999987653 3357889999887643 2589999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++.++||+++++...++++++++|||||.+++.+..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999998777889999999999999999998854
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=143.20 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=120.4
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-------CeEEEEeCCHHHHHHHHHHHhhcc---CCCccEE
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-------DKIDLLEQSSKFIEQAKEEILKDC---DKLDKCY 188 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-------~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~ 188 (883)
.++...+......+..++++||++||||..+..++..-. .+|+++|+++.|+..+++++.+.. .....++
T Consensus 85 HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 85 HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWV 164 (296)
T ss_pred hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEE
Confidence 344455554455556789999999999999988876521 379999999999999999986542 2336789
Q ss_pred EccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---cccc------------
Q psy8372 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---NEYD------------ 253 (883)
Q Consensus 189 ~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---~~~~------------ 253 (883)
++|+++++++. ++||..++...+..+++ +.+.+++++|+|||||++.+.++...... ..++
T Consensus 165 ~~dAE~LpFdd--~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 165 EGDAEDLPFDD--DSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred eCCcccCCCCC--CcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhH
Confidence 99999998765 89999999999999977 88999999999999999999988765421 0000
Q ss_pred ------------CCcccccccchhhhhhhhhccccccc
Q psy8372 254 ------------DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 254 ------------~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+.-.-+.+.+++..+.++|||..+.
T Consensus 241 ~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 01111123566899999999999876
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=160.50 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ...+++..+|+.+.+... ++||+|+|..+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-~~~v~~~~~d~~~~~~~~--~~fD~I~s~~~ 341 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-KCSVEFEVADCTKKTYPD--NSFDVIYSRDT 341 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-CCceEEEEcCcccCCCCC--CCEEEEEECCc
Confidence 467799999999999998777654347999999999999999876533 235688899988765433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++ +..++++++++|||||.+++.++....... .+....+....+..++.++++++||+++..
T Consensus 342 l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 342 ILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 999976 789999999999999999999876432110 001111223446778999999999998744
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-14 Score=146.58 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc--CC----CccEEEccCCCCCCCcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DK----LDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~--~~----~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++|||+|||+|.++..|+..|.. |+|+|+|+.|++.|+++..... .. ++++.+.++++.. +.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCe-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cccceee
Confidence 578999999999999999988866 9999999999999999844431 11 1234444444432 5799999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------ccc-----CCcccccccchhhhhhhhhcc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYD-----DEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~-----~~~~~~~~s~~~~~~l~~~aG 274 (883)
|..+++|+.+ +..++..+.+.|||||.+++++.......+ ... ...+..+.++.+...++..++
T Consensus 164 csevleHV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 164 CSEVLEHVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred eHHHHHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9999999955 999999999999999999999987543211 000 122333457778888888888
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
+.+....-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 77665443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=153.15 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=108.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++... ..+|+++|+|+.|++.|+++... .+++++.+|+.+.+... ++||+|+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~--~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPT--DYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCC--CceeEEEEcC
Confidence 457899999999999988776653 24799999999999999987542 34578889988765433 6899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-ccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|+++ ...++++++++|||||.+++......... .......+....+.+++.++++++||+.+..+.
T Consensus 187 ~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 187 SIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999977 67899999999999999988764432211 001111112234678999999999999887654
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=147.00 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=109.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g---~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|+++..... ...++++++|+.+++. ..+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCEEe
Confidence 466799999999999998787753 2279999999999999999877543 3356889999987653 2589999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---c-------c---cCC-------------ccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---E-------Y---DDE-------------DSSVVRS 262 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~-------~---~~~-------------~~~~~~s 262 (883)
+..++||+++++...++++++++|||||.+++.+........ . + ... ......+
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 999999998877889999999999999999999865322110 0 0 000 0112346
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
.+++.++++++||..+..
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 779999999999986643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=158.86 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.+++... ...++.+++.|+........+++||+|+++.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 46799999999999999887764 469999999999998865432 234567888888643222223689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+|+++++...++++++++|||||++++.+.+...........+..++++...|.++|.++||.......
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNS 182 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCE
Confidence 999987788999999999999999999987644332333344667777888999999999999875544
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=138.01 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.++||+|||.|+.+.+|+.+|+. |+++|.|+.+++.+++.+...... ++..+.|+.+.... +.||+|++..++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~---~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP---EEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T---TTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc---CCcCEEEEEEEe
Confidence 4679999999999999999999997 999999999999998877765544 57788888877653 489999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+|++.+....+++.+...++|||++++.+....... -...+..+...+.++...+. |+++++
T Consensus 105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~--p~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 105 MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY--PCPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC--CCCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 999988889999999999999999999776533221 11222333345566777665 455553
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=148.16 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.. +.. +|+|+|+|+.|++.|+++.......++++..+|+.+++... ++||+|+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~--~~fD~Vi~~ 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD--NSVDVIISN 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--CceeEEEEc
Confidence 57889999999999987755554 333 69999999999999999887665556788889988765433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-ccC------Ccccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YDD------EDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-~~~------~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+++|.++ ...++++++++|||||++++.+......... ... .......+..++..+++++||..+...
T Consensus 154 ~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 154 CVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred CcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 99999976 6789999999999999999987654321100 000 000112356688999999999887543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=145.82 Aligned_cols=138 Identities=21% Similarity=0.174 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.+|||+|||+|.++..++..|. +|+|+|+|+.|++.+++++..... .+++...|+..... +++||+|++..++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~~vl~ 195 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILSTVVLM 195 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEcchhh
Confidence 45999999999999998888876 599999999999999998876654 45677777765443 36899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
|+++++...+++++.++|+|||++++......... .......+..+..++.+.++. |+++...
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~--~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY--PCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC--CCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 99877789999999999999999777553322111 111222344567788888865 7776543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-13 Score=139.12 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=101.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.||||+|||.|..+.+++.+|+. |+|+|+|+.+++.|.+..... ....++++++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 35679999999999999999999887 999999999999875432110 1234678999998876432
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.+.||.|+...+++|++.+....+++.+.++|||||++++......... .....+..+..++.++|..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~----~~gpp~~~~~~eL~~~f~~ 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE----MAGPPFSVSPAEVEALYGG 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC----CCCcCCCCCHHHHHHHhcC
Confidence 2579999999999999988888999999999999998777765432211 1111234467788888864
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-14 Score=132.94 Aligned_cols=98 Identities=24% Similarity=0.338 Sum_probs=65.3
Q ss_pred EEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccC
Q psy8372 139 LDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 139 LDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ 217 (883)
||||||+|.++..++..... +++|+|+|+.|++.|+++..............+..+.......++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999988888533 79999999999999998888765444445555555443333235999999999999994
Q ss_pred hHHHHHHHHHHHHHhccCcEE
Q psy8372 218 DEDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 218 ded~~~~l~~~~r~LKPGG~l 238 (883)
+ +..++++++++|||||.|
T Consensus 81 ~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred h--HHHHHHHHHHHcCCCCCC
Confidence 4 889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=142.12 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
.+......++..+.... ...+.+|||+|||+|.++..++..+.. +++++|+|+.+++.++++.. .++.++..|
T Consensus 15 ~q~~~~~~l~~~~~~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d 88 (240)
T TIGR02072 15 IQREMAKRLLALLKEKG--IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHhhhhc--cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecc
Confidence 44445555555553211 123478999999999999988887654 68999999999999988765 245788899
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc--CCcccccccchhhhhh
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD--DEDSSVVRSLPQFCLL 269 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~--~~~~~~~~s~~~~~~l 269 (883)
+.+.+... ++||+|++..++||+.+ +..++.++.++|+|||.+++.++.......... ......+.+..++.++
T Consensus 89 ~~~~~~~~--~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
T TIGR02072 89 AEKLPLED--SSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKAL 164 (240)
T ss_pred hhhCCCCC--CceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 88776433 68999999999999966 789999999999999999998765433211000 0011223345566666
Q ss_pred hhhccccc
Q psy8372 270 FSKANLKC 277 (883)
Q Consensus 270 ~~~aGf~v 277 (883)
+..+ |..
T Consensus 165 l~~~-f~~ 171 (240)
T TIGR02072 165 LKNS-FEL 171 (240)
T ss_pred HHHh-cCC
Confidence 6655 543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-13 Score=140.98 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=107.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||||||+|+.+..++.+|+..|+|+|+++...-+++....-.+.. .+..+-..+++++. . +.||+|+|..|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcCEEEEeee
Confidence 67899999999999999999999999999999998877755432222222 22233346666655 2 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cccC-Ccccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDD-EDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~~-~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
|.|..+ +...|..++..|+|||.+++.+..-.+... .+.. .+-.+..+...+..+++++||+.++.-
T Consensus 192 LYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 192 LYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred hhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 999976 899999999999999999998876444322 1111 222345578899999999999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=124.10 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=79.8
Q ss_pred EEEEcCCCChHHHHHHHhC---C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-cc
Q psy8372 138 VLDVGAGIGRISKYLLAKH---F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WV 212 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g---~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~v 212 (883)
|||+|||+|..+..++... . .+++|+|+|+.|++.|+++...... .++++++|+.+++... ++||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~--~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD--GKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS--SSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC--CCeeEEEEcCCc
Confidence 7999999999999888764 3 4899999999999999999876444 6689999999876433 699999995 55
Q ss_pred ccccChHHHHHHHHHHHHHhccCc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNG 236 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG 236 (883)
++|+++++...+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999899999999999999998
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=134.42 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+.. +++++|+++.+++.++++.. ....+.+...|+.+.+... ++||+|+++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~--~~~D~i~~~ 113 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED--NSFDAVTIA 113 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC--CcEEEEEEe
Confidence 36789999999999999988887763 79999999999999998875 3345678888888765433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------------------cccc-CCc--------ccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------------------NEYD-DED--------SSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------------------~~~~-~~~--------~~~~~s~ 263 (883)
.+++|+++ +..+++++.++|+|||++++.+....... ..+. ..+ ...+.+.
T Consensus 114 ~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 114 FGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred eeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCH
Confidence 99999966 88999999999999999999876432210 0000 000 0123356
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
.+|..++.++||+.+..+.
T Consensus 192 ~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHHHHHHHHcCCccceeee
Confidence 7899999999999876554
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-13 Score=143.07 Aligned_cols=111 Identities=16% Similarity=0.320 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
....++..+. ..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++.. .+.+..+|+.++
T Consensus 19 ~~~~ll~~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~ 88 (258)
T PRK01683 19 PARDLLARVP-----LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASW 88 (258)
T ss_pred HHHHHHhhCC-----CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhcc
Confidence 3445555442 24678999999999999988887643 379999999999999998753 357888888766
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+. ++||+|+++.++||+++ ...++++++++|||||.+++..
T Consensus 89 ~~~---~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 89 QPP---QALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCC---CCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 432 48999999999999976 7799999999999999999975
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=136.19 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... ..+.+...|+.+.. ++||+|++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEEEhh
Confidence 3578999999999999998877654 699999999999999998875533 35678888887653 4899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC-----ccccc---CCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-----KNEYD---DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~-----~~~~~---~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|++.+++..+++++++++++++++.+........ ...+. ........+.+++.++++++||+++..+.
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 9999987778899999999998776665532211000 00011 11122345778999999999999997754
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=135.30 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=110.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+. .+++++|+++.+++.|+++..... ...+.+...|+.+.... .++||+|++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP--DNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC--CCCccEEEEe
Confidence 567999999999999998888774 489999999999999999876532 24567888888776543 3689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----------c-------ccCCc---------ccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------E-------YDDED---------SSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----------~-------~~~~~---------~~~~~s~ 263 (883)
.+++|+++ +..+++++.++|+|||.+++.+........ . +.... ...+.+.
T Consensus 129 ~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (239)
T PRK00216 129 FGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQ 206 (239)
T ss_pred cccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCH
Confidence 99999976 889999999999999999987764332210 0 00000 0122356
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
.++.+++.++||+.+....
T Consensus 207 ~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 207 EELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHHHHhCCCceeeeee
Confidence 7899999999999887665
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=133.89 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++... . .+++|+|+|+.+++.|+++.. ....++.+...|+...+... ++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPFPD--GSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCCCC--CCceEEEEe
Confidence 567899999999999998887764 2 379999999999999998833 23345678888887655433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|+++ +..++++++++|||||.+++.++.
T Consensus 95 ~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 95 RVLQHLED--PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred chhhccCC--HHHHHHHHHHHhcCCcEEEEEecC
Confidence 99999976 789999999999999999998864
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=132.37 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.||||+|||.|..+.+++.+|+. |+|||+|+.+++.|.+..... ....+++.++|+.++.+..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 35679999999999999999998887 999999999999875422110 1234678889998876442
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.+.||+|+...+++|++.+....+++.+.++|+|||++++........ . . ....+..+.+++.++|..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~-~-~--~gPp~~~~~~el~~~~~~ 181 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE-E-L--AGPPFSVSDEEVEALYAG 181 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCc-c-C--CCCCCCCCHHHHHHHhcC
Confidence 258999999999999998888999999999999999766544332211 0 1 111234467788888864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-12 Score=142.21 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++.... .+++...|..++ +++||+|++..+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l-----~~~fD~Ivs~~~ 237 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL-----NGQFDRIVSVGM 237 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc-----CCCCCEEEEeCc
Confidence 577899999999999998887764347999999999999999987522 246666666543 258999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++|+..+++..++++++++|||||.+++.+...
T Consensus 238 ~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 238 FEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 999987778899999999999999999987643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=133.61 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=102.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+.. |+|+|+|+.|++.|+++...... ..+.+..+|+.. . .++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L--LGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c--cCCcCEEEEcc
Confidence 45679999999999999988877664 99999999999999998775533 456778877432 1 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCC-----Cccccc---CCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG-----VKNEYD---DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~-----~~~~~~---~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|+++++...+++++.+.+++++.+.+....... ....+. ........+..++.+++.++||++...+.
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 999998877889999999877544443322110000 000111 11122334667899999999999887644
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-12 Score=131.08 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
+++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++.. .+.+.++|+.+ +.. +++||+|+++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----~~~~~~~d~~~-~~~--~~sfD~V~~~~ 113 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----NINIIQGSLFD-PFK--DNFFDLVLTKG 113 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----CCcEEEeeccC-CCC--CCCEEEEEECC
Confidence 45679999999999999888776 23479999999999999988653 23677888776 322 36999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+++|++++++..+++++++++ ++++++.+....
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999998777899999999998 578888876543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=140.21 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=108.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..+..+|||||||+|.++..+++..+. +++++|. +.+++.|++++...+ ..+++++.+|+.+... . .+|+|++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~---~~D~v~~ 221 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-P---EADAVLF 221 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-C---CCCEEEe
Confidence 356679999999999999988888765 7999997 799999999887664 3457889999875332 2 4799999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-cc-----------CCcccccccchhhhhhhhhccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YD-----------DEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-~~-----------~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
..++|+++++....++++++++|+|||++++.+......... +. ........+.++|.++++++||+.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~ 301 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKD 301 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCe
Confidence 999999987767899999999999999999998754322110 00 000111223579999999999987
Q ss_pred cc
Q psy8372 278 VK 279 (883)
Q Consensus 278 v~ 279 (883)
+.
T Consensus 302 v~ 303 (306)
T TIGR02716 302 VT 303 (306)
T ss_pred eE
Confidence 64
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=133.00 Aligned_cols=150 Identities=22% Similarity=0.214 Sum_probs=112.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+.+|||+|||+|.++..++..+. .++++|+|+.+++.++++........+.+...++.++.... +++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhHH
Confidence 477999999999999987777665 49999999999999999877554334577788877665432 3689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------c---cc--CCcccccccchhhhhhhhhccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------E---YD--DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~---~~--~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+|+.+ +..+++.+.++|+|||.+++.+........ . .. ......+.+..++.++++++||+++.
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 99976 789999999999999999988754321000 0 00 11112234567899999999999987
Q ss_pred ccCCCCCc
Q psy8372 280 SEKGEFSP 287 (883)
Q Consensus 280 ~~~~~~~P 287 (883)
.......|
T Consensus 201 ~~~~~~~~ 208 (224)
T TIGR01983 201 VKGLVYNP 208 (224)
T ss_pred eeeEEeeh
Confidence 66544433
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=137.74 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++..... ...+.+...|+.++ +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCEEE
Confidence 467999999999999998888765 59999999999999999876531 22446777776543 25899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-------ccccCC---cccccccchhhhhhhhhcccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-------NEYDDE---DSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-------~~~~~~---~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
|..+++|++++....+++.+.+ +.+||. ++......... ..+... ...++.+.+++.++++++||++.
T Consensus 218 ~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 218 CLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVA 295 (315)
T ss_pred EcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEE
Confidence 9999999987666677777775 455555 44432111100 011111 11233467899999999999987
Q ss_pred ccc
Q psy8372 279 KSE 281 (883)
Q Consensus 279 ~~~ 281 (883)
..+
T Consensus 296 ~~~ 298 (315)
T PLN02585 296 RRE 298 (315)
T ss_pred EEE
Confidence 544
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-12 Score=131.98 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=108.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. .++++|+++.+++.|+++...... .+.+...++.++.... .++||+|++..+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH-PGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc-CCCccEEEEhhH
Confidence 4678999999999999987777654 599999999999999988765433 3467777776654222 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------------c--cCCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------------Y--DDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------------~--~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|+++ +..+++.+.++|+|||.+++..+........ . ....+..+.+..+|.+++.++||+++
T Consensus 124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 999976 7789999999999999999987643221100 0 01112223466789999999999988
Q ss_pred ccc
Q psy8372 279 KSE 281 (883)
Q Consensus 279 ~~~ 281 (883)
...
T Consensus 202 ~~~ 204 (233)
T PRK05134 202 DIT 204 (233)
T ss_pred eee
Confidence 654
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=128.05 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc-EEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK-CYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.....||+||||||..-.+.--.-..+|+++|+++.|-+.|.+.+.+.....+. |+.++..+++..+ ++++|.|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~-d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA-DGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc-cCCeeeEEEEE
Confidence 445678999999999887443223347999999999999999999887555554 8889988887433 58999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---ccc---CC-----cccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYD---DE-----DSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~~~---~~-----~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+|+.+.+ +.+.|+++.|+|+|||++++.+........ .++ +. .++.. -..+..++++++.|.....
T Consensus 154 vLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~-ltrd~~e~Leda~f~~~~~ 230 (252)
T KOG4300|consen 154 VLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV-LTRDTGELLEDAEFSIDSC 230 (252)
T ss_pred EEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE-EehhHHHHhhhcccccchh
Confidence 9999955 999999999999999999998876543221 111 11 11111 1235567888899988877
Q ss_pred cCCC
Q psy8372 281 EKGE 284 (883)
Q Consensus 281 ~~~~ 284 (883)
++..
T Consensus 231 kr~~ 234 (252)
T KOG4300|consen 231 KRFN 234 (252)
T ss_pred hccc
Confidence 6654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=128.35 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=96.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.++++....+..+++++++|+.++.. .++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh-
Confidence 3779999999999999877765543 799999999999999998877655567899999988642 35899999976
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh---cccccccccCCCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK---ANLKCVKSEKGEF 285 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~---aGf~vv~~~~~~~ 285 (883)
+++ +..+++.++++|+|||.+++..... ...++..+.++ .||+.+.......
T Consensus 118 ~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~----------------~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 118 LAS-----LNVLLELTLNLLKVGGYFLAYKGKK----------------YLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred hhC-----HHHHHHHHHHhcCCCCEEEEEcCCC----------------cHHHHHHHHHhhhhcCceEeeccccCC
Confidence 443 4467888999999999999875211 23344444444 7898887766544
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=127.39 Aligned_cols=139 Identities=22% Similarity=0.194 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
....+.+++.+..... .+++.+|||+|||+|..+..++.... .+|+|+|+|+.|++.|+++........++++.+|+.
T Consensus 27 ~~~~~~~~d~l~l~~~-l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~ 105 (187)
T PRK00107 27 ELWERHILDSLAIAPY-LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAE 105 (187)
T ss_pred HHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHh
Confidence 3444455555533222 23478999999999999987776443 379999999999999999988876656899999998
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
++.. .++||+|+++.. .+ +..+++.++++|||||++++..... ....+..+.+..
T Consensus 106 ~~~~---~~~fDlV~~~~~----~~--~~~~l~~~~~~LkpGG~lv~~~~~~----------------~~~~l~~~~~~~ 160 (187)
T PRK00107 106 EFGQ---EEKFDVVTSRAV----AS--LSDLVELCLPLLKPGGRFLALKGRD----------------PEEEIAELPKAL 160 (187)
T ss_pred hCCC---CCCccEEEEccc----cC--HHHHHHHHHHhcCCCeEEEEEeCCC----------------hHHHHHHHHHhc
Confidence 8654 368999999752 22 6689999999999999999886321 233556666666
Q ss_pred cccccc
Q psy8372 274 NLKCVK 279 (883)
Q Consensus 274 Gf~vv~ 279 (883)
|+.+..
T Consensus 161 ~~~~~~ 166 (187)
T PRK00107 161 GGKVEE 166 (187)
T ss_pred CceEee
Confidence 776543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-12 Score=132.94 Aligned_cols=140 Identities=12% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. ++. +|+|+|+|+.|++.|+++.... .+.+...+...++.. +++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~--~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAE--GERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccccccc--CCCccEE
Confidence 45679999999999998876642 433 7999999999999998875422 235556655555432 3689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------------cccCCcc----cccccchhhhhhh
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------------EYDDEDS----SVVRSLPQFCLLF 270 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------------~~~~~~~----~~~~s~~~~~~l~ 270 (883)
+|+.++||+++++...++++++++++ |.+++.+...+...+ .+...+. ....+.+++.+++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999988777899999999998 677777765442111 0111111 1233677888888
Q ss_pred hhcccccccc
Q psy8372 271 SKANLKCVKS 280 (883)
Q Consensus 271 ~~aGf~vv~~ 280 (883)
++ ||++...
T Consensus 212 ~~-Gf~~~~~ 220 (232)
T PRK06202 212 PQ-GWRVERQ 220 (232)
T ss_pred hC-CCeEEec
Confidence 88 8886644
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-12 Score=132.81 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=92.5
Q ss_pred hHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEE
Q psy8372 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 162 (883)
Q Consensus 83 ~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~g 162 (883)
+..|+..+..||..... .. + ..+....+.++..+... ..++.+|||||||||.++..++.....+|+|
T Consensus 12 ~~~f~~iA~~YD~~n~~----~s-~----g~~~~wr~~~~~~l~~~---~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~g 79 (226)
T PRK05785 12 QEAYNKIPKAYDRANRF----IS-F----NQDVRWRAELVKTILKY---CGRPKKVLDVAAGKGELSYHFKKVFKYYVVA 79 (226)
T ss_pred HHHHHhhhHHHHHhhhh----cc-C----CCcHHHHHHHHHHHHHh---cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEE
Confidence 45677777777753211 10 0 11223334444444221 1246799999999999998887774237999
Q ss_pred EeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccC
Q psy8372 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 163 vD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG 235 (883)
+|+|+.|++.|+++. .++++|+.+++..+ ++||+|++..++||+++ +..++++++|+|||.
T Consensus 80 vD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d--~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 80 LDYAENMLKMNLVAD--------DKVVGSFEALPFRD--KSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred ECCCHHHHHHHHhcc--------ceEEechhhCCCCC--CCEEEEEecChhhccCC--HHHHHHHHHHHhcCc
Confidence 999999999998642 35778888876544 79999999999999976 889999999999994
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=131.96 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
+.+.++++++.. .+..+|.|+|||+|..+..++.+.+. .++|+|.|++|++.|+.+..+ ++|..+|+.+
T Consensus 17 RPa~dLla~Vp~-----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-----~~f~~aDl~~ 86 (257)
T COG4106 17 RPARDLLARVPL-----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-----ATFEEADLRT 86 (257)
T ss_pred CcHHHHHhhCCc-----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-----CceecccHhh
Confidence 345667777643 35679999999999999877777655 899999999999999887653 4899999999
Q ss_pred CCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+.. ..|+++++.+||++++ -..+|.++...|.|||.|.+.-+..
T Consensus 87 w~p~~---~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 87 WKPEQ---PTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cCCCC---ccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCc
Confidence 98766 8999999999999987 7799999999999999999987654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-12 Score=126.50 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
..-.++||+|||.|.++..|+.+ +.+++++|+|+.+++.|+++.... .++++.+.++.++.|. ++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~---~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPE---GRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---S---S-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCC---CCeeEEEEehH
Confidence 34578999999999999977666 467999999999999999998853 5789999999876544 59999999999
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
++++.+ +++..++.++...|+|||.|++...... .-..+++....+....+|.+.
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------NCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------HHHHTT-S--HHHHHHHHHHH
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------cccccCcccchHHHHHHHHHH
Confidence 999976 6789999999999999999999874211 111233444455666666554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=122.49 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++...... .++++.+|+.+.. .++||+|+++..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV----RGKFDVILFNPPY 92 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc----CCcccEEEECCCC
Confidence 457899999999999998887776 799999999999999998875543 3577888876542 2489999999888
Q ss_pred cccChH-------------------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 214 MFILDE-------------------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 214 ~hl~de-------------------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
++.++. ....++.++.++|||||.+++...... ...++...++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------~~~~~~~~l~~~g 157 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------GEPDTFDKLDERG 157 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------ChHHHHHHHHhCC
Confidence 776431 145789999999999999999874221 2567889999999
Q ss_pred cccccccCCCCC
Q psy8372 275 LKCVKSEKGEFS 286 (883)
Q Consensus 275 f~vv~~~~~~~~ 286 (883)
|..........+
T Consensus 158 f~~~~~~~~~~~ 169 (179)
T TIGR00537 158 FRYEIVAERGLF 169 (179)
T ss_pred CeEEEEEEeecC
Confidence 988776555433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=133.16 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHhCC-----C-eEEEEeCCHHHHHHHHHHHhhc-----------------------
Q psy8372 134 GKTRVLDVGAGIGR----ISKYLLAKHF-----D-KIDLLEQSSKFIEQAKEEILKD----------------------- 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~----~~~~l~~~g~-----~-~V~gvD~S~~~le~A~~~~~~~----------------------- 180 (883)
++.+|+|+|||+|. ++..++..+. . +|+|+|+|+.|++.|++..-..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 3443444321 2 7999999999999999853110
Q ss_pred ----cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 181 ----CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 181 ----~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
....+.|.+.|+.+.++.. ++||+|+|.++++|+++++...++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~--~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPL--GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCcc--CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0135688899998865433 68999999999999988778899999999999999999976
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=113.41 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|+++........++++..|+...... ..++||.|++..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~ 96 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-SLPEPDRVFIGG 96 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-hcCCCCEEEECC
Confidence 4567999999999999998887754 37999999999999999988766555667787876643222 125899999977
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..++ ...+++.++++|||||.+++..
T Consensus 97 ~~~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 SGGL-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cchh-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 5443 4589999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=122.22 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=104.3
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+|||+|||+|.+...|++.+++ .++|+|.|+.+++.|+..+......+ ++|.+.|+.+.... .++||+|+--.++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~--~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL--SGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc--ccceeEEeecCce
Confidence 39999999999999999999988 59999999999999999888775544 89999999876443 3789999876655
Q ss_pred ccc------ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 214 MFI------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 214 ~hl------~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
..+ +...+...+..+.++|+|||+++|..+++ +..++...+...||+...+-..
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~----------------T~dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF----------------TKDELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc----------------cHHHHHHHHhcCCeEEEEeecc
Confidence 443 11234567888999999999999998654 5678888899889887765443
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=123.33 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+.. +|+++|+|+.+++.|+++........++++..|+... ..++||+|++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~D~v~~~~ 105 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----LPGKADAIFIGG 105 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----cCcCCCEEEECC
Confidence 46779999999999999988877654 8999999999999999988765444567777776421 125899999987
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..++ +..++..+.++|+|||++++..... .+..+...+++++||+.+..
T Consensus 106 ~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~---------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 106 SGGN-----LTAIIDWSLAHLHPGGRLVLTFILL---------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred CccC-----HHHHHHHHHHhcCCCeEEEEEEecH---------------hhHHHHHHHHHHCCCCcceE
Confidence 6544 3468899999999999998865321 13457778899999876543
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=130.92 Aligned_cols=200 Identities=28% Similarity=0.395 Sum_probs=149.4
Q ss_pred chhHHHHHHHHhhhcCCCcccc-ccccCCCccc---cchHHHHHHHHHHhhcc-cCCCC----CCeEEEEcCCCChHHHH
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDG-MLNGYSSISD---LDIQTSNQFLSSLYCQK-KSDPG----KTRVLDVGAGIGRISKY 151 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~-~~~~y~~~~~---~~~~~~~~lL~~l~~~~-~~~~~----~~rVLDVGCGtG~~~~~ 151 (883)
....||.+...||...+.+.++ .+.+|..... .+...+..+++.+.... ..... -...+|+|.|.|..+..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3467899999999999999988 6777877655 56677777777775421 12222 36889999999999999
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHH
Q psy8372 152 LLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQI 231 (883)
Q Consensus 152 l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~ 231 (883)
++. .+++|.+++.....+-.+..... .+ ++.+.+|...-.| +-|+|++.|+|||++|++..++|++++..
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P-----~~daI~mkWiLhdwtDedcvkiLknC~~s 264 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTP-----KGDAIWMKWILHDWTDEDCVKILKNCKKS 264 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-CC---cceecccccccCC-----CcCeEEEEeecccCChHHHHHHHHHHHHh
Confidence 988 56679999999888877777663 22 3455555544333 34799999999999999999999999999
Q ss_pred hccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccccc
Q psy8372 232 LNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291 (883)
Q Consensus 232 LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~el~ 291 (883)
|+|||.+++.+..... ....+..+....+..+.+...+.++|.+....+.....|.+.+
T Consensus 265 L~~~GkIiv~E~V~p~-e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF 323 (342)
T KOG3178|consen 265 LPPGGKIIVVENVTPE-EDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGF 323 (342)
T ss_pred CCCCCEEEEEeccCCC-CCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcC
Confidence 9999999999985544 2333444455566666777777778888877777776665544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-12 Score=130.79 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
-.++||+|||||..+..+-.. ...++|+|+|.+|++.|.++..-. ...++++..+.....++.||+|++..||.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----TLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----HHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 579999999999999755443 556999999999999999875432 33455555444323347899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
++.. +..++..+...|+|||.|.++.-...+.....-.....+.++....+.++...||+++..+..
T Consensus 200 YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 200 YLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 9976 889999999999999999998765544433222333445556778899999999999876654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-11 Score=121.91 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++++||||+|||.|.+..++.........|+|++++.+..|.++.. .++++|+.+-....++++||.|+++.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv-------~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGV-------SVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCC-------CEEECCHHHhHhhCCCCCccEEehHhH
Confidence 5789999999999999988877544469999999999988877643 578999887554444689999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC-----------C-------CcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-----------G-------VKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~-----------~-------~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
|+++.. +..+|.++.|+ |...+++.++.. + ..+.+-.....+.-|..++++++++.|
T Consensus 85 LQ~~~~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 85 LQAVRR--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HHhHhH--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 999965 88999988776 557777765511 1 111111222233446779999999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
++++....
T Consensus 160 i~I~~~~~ 167 (193)
T PF07021_consen 160 IRIEERVF 167 (193)
T ss_pred CEEEEEEE
Confidence 99886543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=141.78 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..... +|+|+|+|+.|++.|+++..... ..+.++++|+.+++....+++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 5789999999999998877765443 89999999999999998865432 245678888877652122368999999999
Q ss_pred ccccC-----------hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFIL-----------DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~-----------ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||+. .+++..++++++++|||||.+++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 98762 356889999999999999999998853
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=127.39 Aligned_cols=130 Identities=14% Similarity=0.019 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|..+..++..... +|+|+|+|+.|++.|+++.......++.++++|+ ..+.....+++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999999988776433 7999999999999999988766556678999998 5443111136899999976
Q ss_pred cccccC------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
...+.. ......++++++++|||||.+++..... .....+.+.+++.|+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~---------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE---------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH---------------HHHHHHHHHHHhCccccc
Confidence 543321 1114579999999999999999987321 123466777777887554
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-11 Score=124.04 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=128.2
Q ss_pred HHHHHHHHhhhcCCCcccc-ccccCCCccccchHHHHHHHHHHhhcccC-CCCCCeEEEEcCCCChHHHHHHHhCCC---
Q psy8372 84 SHYSEVTEYYSNVPPTIDG-MLNGYSSISDLDIQTSNQFLSSLYCQKKS-DPGKTRVLDVGAGIGRISKYLLAKHFD--- 158 (883)
Q Consensus 84 ~~~~~~~~yWd~~~~~~~~-~~~~y~~~~~~~~~~~~~lL~~l~~~~~~-~~~~~rVLDVGCGtG~~~~~l~~~g~~--- 158 (883)
.+-.....|||......+. ... ....++......... .....+||+||||.|.....+++....
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfk-----------dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l 98 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFK-----------DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRL 98 (264)
T ss_pred hhhcchhhhhhhhhhhccccccc-----------hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCe
Confidence 4455678899876544332 111 222333333222111 112238999999999999888876554
Q ss_pred eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC--CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCc
Q psy8372 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 236 (883)
Q Consensus 159 ~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG 236 (883)
.|++.|.|+.+++..+++..... ..+.....|+..-. .....+++|.|++..+|.-++++....++.+++++|||||
T Consensus 99 ~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG 177 (264)
T KOG2361|consen 99 KVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGG 177 (264)
T ss_pred EEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCc
Confidence 79999999999999998765443 33334444544322 2222479999999999999999889999999999999999
Q ss_pred EEEEEecccCCCcc------------cccCCcc--cccccchhhhhhhhhcccccccccC
Q psy8372 237 IIIIKDNVASGVKN------------EYDDEDS--SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 237 ~lvi~~~~~~~~~~------------~~~~~~~--~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+++.|....+..+ .+-..|+ .++.+.+++..+|..|||..+.-..
T Consensus 178 ~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 178 SLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred EEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccc
Confidence 99999987554321 1112333 3666888999999999999875443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-11 Score=122.57 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++......++|+|+|+.+++.|+++ .++++..|+.+..+...+++||+|+|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 35679999999999999877665444689999999999998652 23677888765221112368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC-----------CCc-------ccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-----------GVK-------NEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~-----------~~~-------~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
+||+++ +..+++++.+++++ +++..+... ... ..+.........+..++.++++++|
T Consensus 85 l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 85 LQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 999976 77899988887654 344332210 000 0000111223457889999999999
Q ss_pred cccccccCC
Q psy8372 275 LKCVKSEKG 283 (883)
Q Consensus 275 f~vv~~~~~ 283 (883)
|+++.....
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999875543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=117.16 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+.. +|+++|+++.+++.|++++..+....++++..|..+..+ +++||+|+|+.-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP---DGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---ccceeEEEEccc
Confidence 5679999999999999988887776 899999999999999999988765547888888876443 369999999988
Q ss_pred ccccCh---HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILD---EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~d---ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++.-.+ +-...++..+.+.|||||.+++...
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 765543 2367899999999999999987653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-11 Score=132.14 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-------CCCCccceeccCCCCceeeEe--cCHHHHHHHHHc---cC
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-------PGGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV---GS 415 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-------~~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~---~~ 415 (883)
..-.+.+.+.+|++| ...||.||.||+|+... ..+. +..-+....++..+|+ ..|+++..+..- ..
T Consensus 239 ~~~~~~Led~IRevf-vg~GFqEV~TPtLt~eE~~E~m~~~~g~-eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~ 316 (453)
T TIGR02367 239 EDYLGKLERDITKFF-VDRGFLEIKSPILIPAEYIERMGIDNDT-ELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALP 316 (453)
T ss_pred ccHHHHHHHHHHHHH-HHCCCEEEECCeecchHHHHhhcCccCC-cccccceEecCceEecccCHHHHHHHHHHhhhhcc
Confidence 345678999999999 68999999999996310 1111 1100110113456888 888888764321 12
Q ss_pred C-CcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 416 V-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 416 ~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+ -|+|+||+|||+|..+.+|..||+|+++++++.
T Consensus 317 ~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~ 351 (453)
T TIGR02367 317 DPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGS 351 (453)
T ss_pred CCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECC
Confidence 2 399999999999999999999999999998763
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=126.07 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=108.5
Q ss_pred ccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEE
Q psy8372 110 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCY 188 (883)
Q Consensus 110 ~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~ 188 (883)
...........+++.+. .++.+|||+|||+|.++..+++.|+..|+|+|++|.+++.|+.++..+.... ....
T Consensus 144 G~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 144 GTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred CCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 33445666667777775 3688999999999999998888899899999999999999999988764332 1111
Q ss_pred EccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 189 ~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
..+... ....++||+|+++- |.++ +..+...+.+.|||||+++++..... ..+...+
T Consensus 218 ~~~~~~---~~~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~~---------------q~~~V~~ 274 (300)
T COG2264 218 GFLLLE---VPENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSGILED---------------QAESVAE 274 (300)
T ss_pred cccchh---hcccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehHh---------------HHHHHHH
Confidence 111111 11125899999975 4444 67899999999999999999984321 2457788
Q ss_pred hhhhcccccccccCCC
Q psy8372 269 LFSKANLKCVKSEKGE 284 (883)
Q Consensus 269 l~~~aGf~vv~~~~~~ 284 (883)
.+.++||+++......
T Consensus 275 a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 275 AYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHhCCCeEeEEEecC
Confidence 8889999998776553
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=119.32 Aligned_cols=142 Identities=11% Similarity=0.037 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh------------ccCCCccEEEccCCCCCCC-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK------------DCDKLDKCYNVGIQDFKPE-D 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~------------~~~~~~~~~~~d~~~~~~~-~ 199 (883)
.++.|||+.|||.|..+.+|+.+|+. |+|+|+|+.+++.+.+.... .....++++++|+.++.+. .
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 35679999999999999999999998 99999999999998663210 1223568999999988642 2
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc-ccccc
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA-NLKCV 278 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a-Gf~vv 278 (883)
..+.||+|+-..+|++++++...+..+.+.++|+|||.+++........ ....-+..+..++.+++... .++.+
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~-----~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK-----SQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC-----CCCCCCcCCHHHHHHhccCCceEEEe
Confidence 2358999999999999999889999999999999999988887532211 11112333567888888653 55555
Q ss_pred cc
Q psy8372 279 KS 280 (883)
Q Consensus 279 ~~ 280 (883)
..
T Consensus 196 ~~ 197 (226)
T PRK13256 196 DS 197 (226)
T ss_pred ee
Confidence 43
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=124.77 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++...+.... .+. +.... .+||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~--~~~-----~~~~~--~~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL--NVY-----LPQGD--LKADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc--eEE-----EccCC--CCcCEEEEcCc
Confidence 4678999999999999987777676679999999999999999987553211 011 11111 26999999754
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+ ....++.++.++|||||+++++..... ....+...+.+.||+++....
T Consensus 189 ~~-----~~~~l~~~~~~~LkpgG~lilsgi~~~---------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 AN-----PLLELAPDLARLLKPGGRLILSGILEE---------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HH-----HHHHHHHHHHHhcCCCcEEEEEECcHh---------------hHHHHHHHHHHCCCEEEEEEE
Confidence 32 256789999999999999999874321 345778889999999876544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=121.12 Aligned_cols=140 Identities=10% Similarity=0.033 Sum_probs=95.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVvs 209 (883)
..++.+|||+|||+|.++..++.... ..|+|+|+++.|++.+.+++... .++.++.+|+.+... ....++||+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 35788999999999999988877642 37999999999999887776543 456788888765211 112357999986
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
.... + .....++++++++|||||.++++.+.. ... +..... +...+..+.++++||+.+.....
T Consensus 148 d~~~---p-~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~d--~~~~~~---~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 148 DVAQ---P-NQAEIAIDNAEFFLKDGGYLLLAIKAR-SID--VTKDPK---EIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred CCCC---h-hHHHHHHHHHHHhcCCCcEEEEEEecc-ccc--CcCCHH---HHHHHHHHHHHHcCCeEEEEEcC
Confidence 4321 1 123457899999999999999964321 110 111111 11234569999999998866553
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=128.57 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC---CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+.+|||+|||+|.++..++..++. +|+++|.|+.|++.|++++..+.. .+++++..|..+... +++||+|+|+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~---~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---PFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC---CCCEEEEEEC
Confidence 469999999999999988887655 899999999999999999875532 245777777654322 2489999999
Q ss_pred cccccc---ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+|.. .++...++++.++++|+|||.+++...
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 887653 333456899999999999999999863
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=122.65 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=101.1
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~ 190 (883)
.+...+...+++..+. .++.+|||+|||+|.++..+++.|..+|+|+|+++.+++.|++++..++... .+...
T Consensus 144 ~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~ 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVS 216 (295)
T ss_dssp HCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEES
T ss_pred CCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEE
Confidence 3344555666666663 4678999999999999998888898899999999999999999998775443 33222
Q ss_pred cCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
...+.. .++||+|+++-.. +-+..++..+.++|+|||+++++-.... ..+.+.+.+
T Consensus 217 ~~~~~~----~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~---------------~~~~v~~a~ 272 (295)
T PF06325_consen 217 LSEDLV----EGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE---------------QEDEVIEAY 272 (295)
T ss_dssp CTSCTC----CS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG---------------GHHHHHHHH
T ss_pred Eecccc----cccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH---------------HHHHHHHHH
Confidence 222221 2689999987543 2266788899999999999999885322 344667777
Q ss_pred hhcccccccccCC
Q psy8372 271 SKANLKCVKSEKG 283 (883)
Q Consensus 271 ~~aGf~vv~~~~~ 283 (883)
++ ||+++.....
T Consensus 273 ~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 273 KQ-GFELVEEREE 284 (295)
T ss_dssp HT-TEEEEEEEEE
T ss_pred HC-CCEEEEEEEE
Confidence 76 9998765543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=116.08 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.|++++...+ ..++.++..|..+..+. ..+.||+|+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~V~ 116 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDRIF 116 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCEEE
Confidence 357789999999999999877664 33 379999999999999999987665 45667888887664322 135899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+... . .++..+++.+.++|||||++++..... .+..+....++++||.
T Consensus 117 ~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 117 IGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL---------------ETVNNALSALENIGFN 164 (198)
T ss_pred ECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH---------------HHHHHHHHHHHHcCCC
Confidence 8542 2 336789999999999999998755211 1345677778888874
|
|
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-09 Score=113.69 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=62.1
Q ss_pred CeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 785 GNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 785 G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
..||.+|++|.+. +.+.+.++..| .+...+.| ++++..| +||++|+|||+|||+|+|++..+|.+|.+
T Consensus 229 a~ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqa 298 (309)
T cd00645 229 AFELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQA 298 (309)
T ss_pred eeeecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceee
Confidence 3699999999999 88888898888 56677766 9999999 99999999999999999999999999986
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=122.83 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++...+... .+.+...+... . .+++||+|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~--~~~~fDlVvan~ 233 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P--IEGKADVIVANI 233 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c--cCCCceEEEEec
Confidence 356899999999999998887777768999999999999999998765432 23344443222 1 135899999976
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..++ +..++.++.++|||||+++++..... ...++...+++. |+++..
T Consensus 234 ~~~~-----l~~ll~~~~~~LkpgG~li~sgi~~~---------------~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 234 LAEV-----IKELYPQFSRLVKPGGWLILSGILET---------------QAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred CHHH-----HHHHHHHHHHHcCCCcEEEEEeCcHh---------------HHHHHHHHHHcc-CceeeE
Confidence 5432 55789999999999999999874321 234666666665 776644
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=120.42 Aligned_cols=109 Identities=20% Similarity=0.278 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC--Cc----cceeccCCCCceeeEe--cCHHHHHHHHHcc
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG--AR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMVG 414 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g--a~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~~ 414 (883)
-+.+.+.||++| ...||.|+.+|.|+.. .|.+ |+ .|.+. ...-|+ +||-+..-|. ..
T Consensus 110 l~~~~~~Ir~if-~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~-----~~~lLRThTSp~qir~L~-~~ 182 (339)
T PRK00488 110 ITQTIEEIEDIF-VGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID-----DGLLLRTHTSPVQIRTME-KQ 182 (339)
T ss_pred HHHHHHHHHHHH-HhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc-----CCceeeccCcHHHHHHHH-hc
Confidence 456788899999 5899999999999652 1111 11 12221 112343 8887655543 23
Q ss_pred CCC-cEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHHh
Q psy8372 415 SVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYCL 466 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i~ 466 (883)
... |+|++|+|||++..+.+|.|+|+|+|.-+... ++.++...++.++++++
T Consensus 183 ~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 183 KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 333 89999999999999999999999999877664 47888888887777765
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=117.09 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++..... .+++++.+|..+..+.. ++||+|++
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~--~~fD~Ii~ 148 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH--APFDAIIV 148 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC--CCccEEEE
Confidence 467899999999999997666543 23799999999999999998876543 34678888887654432 68999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++|+++ ++.+.|+|||+|++..
T Consensus 149 ~~~~~~~~~--------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAASTIPS--------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcchhhH--------HHHHhcCcCcEEEEEE
Confidence 999887742 5778999999998865
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=131.07 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=106.7
Q ss_pred ecccCCCCCccccccCccchhhhcccccccccChhhhHHHHH-----HHHHHHHHHHHHhcCCCeEEEcCCeeccCC---
Q psy8372 309 LNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRF-----RSKFLMRTREFLATHRDFVEVETPTLFKRT--- 380 (883)
Q Consensus 309 l~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~-----rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--- 380 (883)
|+.+...+||...+..-...|+||++| |++..++++.+ .+.+.+++|++| ...||.||.||+|+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f-~~~GF~EV~TPtLt~ee~~e 237 (417)
T PRK09537 163 LLSPKDKISLNSEKPKFKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFF-VDRGFLEIKSPILIPAEYIE 237 (417)
T ss_pred hcCcccccccccCCchhhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHH-HHCCCEEEECCeeecHHHHH
Confidence 333334556654433345678888888 89999999999 999999999999 57999999999996431
Q ss_pred ----CCCCccceeccCCCCceeeEe--cCHHHHHHHHHc---cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 381 ----PGGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV---GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 381 ----~~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~---~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
..|+ .+.-+....+...+|+ ..|++++.+..- ... -|+|+||+|||+|..+..|.+||+|++++..+.+
T Consensus 238 ~~g~~~g~-~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~ 316 (417)
T PRK09537 238 RMGIDNDT-ELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSG 316 (417)
T ss_pred HhCCCCcc-cchhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCc
Confidence 1111 1111111113456788 678887764211 111 2899999999999988888899999999998764
Q ss_pred --HHHHHHHHHHHHHHH
Q psy8372 451 --RDDVMRLIEELLCYC 465 (883)
Q Consensus 451 --~~dvm~~~E~li~~i 465 (883)
+.|++.++++++..+
T Consensus 317 ~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 317 CTRENLENIIDDFLKHL 333 (417)
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 778777777666554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=122.78 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH-hC-CC-eEEEEeCCHHHHHHHHHHHhh-c-cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLA-KH-FD-KIDLLEQSSKFIEQAKEEILK-D-CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~-~g-~~-~V~gvD~S~~~le~A~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
++.+|||||||.|.++..++. .. .. +++|+|.++.+++.|++.+.. . ..+.++|..+|+.+.... .+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--LKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--cCCcCEEE
Confidence 567999999998865443433 32 33 799999999999999999854 3 345689999999886433 25899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+. +++++..++..++++++++.|+|||.+++..
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999965668999999999999999999987
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.7e-10 Score=113.28 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC--ccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL--DKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|.|+.+++.++++........ +.++..|+.+... +.+||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR---GDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc---ccCceEEEEC
Confidence 356799999999999999888874 469999999999999999887654332 5677787765332 2479999987
Q ss_pred ccccccC-------------------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 211 WVLMFIL-------------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 211 ~vL~hl~-------------------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
..+.+.. ...+..+++++.++|||||.+++..... ...+.+.+++.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------~~~~~l~~~~~ 162 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------TGEDEVLEYLE 162 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------CCHHHHHHHHH
Confidence 6543311 1225678999999999999998876321 12457888999
Q ss_pred hccccccccc
Q psy8372 272 KANLKCVKSE 281 (883)
Q Consensus 272 ~aGf~vv~~~ 281 (883)
++||++....
T Consensus 163 ~~g~~~~~~~ 172 (188)
T PRK14968 163 KLGFEAEVVA 172 (188)
T ss_pred HCCCeeeeee
Confidence 9999876543
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=121.51 Aligned_cols=114 Identities=28% Similarity=0.396 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC--Cc----cceeccCCC--CceeeEe--cCHHHHHHHHH
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG--AR----EFVVPTHEP--NKFYSLV--QSPQQLKQLLM 412 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g--a~----~f~v~~~~~--~~~~~L~--~Spql~kq~l~ 412 (883)
-+++.+.+|++| -..||.|+.+|.++.. .|.. |+ .|.+..... .....|+ +||.+..-+..
T Consensus 19 ~~~~~~~i~~~~-~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~ 97 (247)
T PF01409_consen 19 ITKFIREIRDIF-VGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNK 97 (247)
T ss_dssp HHHHHHHHHHHH-HCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHH
Confidence 456788899999 5899999999999541 2221 22 243321111 2334565 56755544301
Q ss_pred cc-CCCcEEEEeeceecCCCCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 413 VG-SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 413 ~~-~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
.. .=-|+|+||+|||+|..+.+|.|||+|+|.-+...+ +.++..+++.+++++
T Consensus 98 ~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~l 153 (247)
T PF01409_consen 98 HRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKEL 153 (247)
T ss_dssp TSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHH
Confidence 11 124999999999999999999999999998776643 666666666655554
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=118.54 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~~ 211 (883)
...+|||||||+|.++..++...+. .|+|+|+|+.|++.|++++......+++++++|+.++... ..++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3568999999999999988887654 7999999999999999988776666789999998765321 1125899999876
Q ss_pred cccccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+.... ....++++++++|||||.|++.+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54433210 01478999999999999999887
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-10 Score=116.33 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++.... .+|+++|+++.+++.|++++...+..++++..+|.....+.. ++||+|++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~--~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN--APYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC--CCcCEEEEC
Confidence 5788999999999999986665532 379999999999999999988766667789999987654433 689999998
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++++ ..+.+.|||||++++..
T Consensus 153 ~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch--------HHHHHhhCCCcEEEEEE
Confidence 8776653 24667899999998865
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-10 Score=121.78 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCC-CCc-C-CCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK-PED-L-NIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~-~~~-~-~~~FDl 206 (883)
+++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|++++..... -.+.++++|+.+.. ... . .+...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4567999999999999998887753 3699999999999999998765422 23466888887632 211 0 012345
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+++..+++++++++...+|++++++|+|||.+++......
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 5566789999888899999999999999999998765443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=107.04 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=85.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
|.+|||+|||+|.++..++..+..+++|+|+++..++.|+.++..... ..+++++.|..+.......++||+|+++...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 458999999999999988888845899999999999999999887643 4578999998876522224799999998876
Q ss_pred cccCh------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 214 MFILD------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 214 ~hl~d------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..... +....+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 53311 2356899999999999999998764
|
... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=115.81 Aligned_cols=100 Identities=17% Similarity=0.077 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..... +|+++|+++.+++.|++++...+..+++++.+|..+..+.. .+||+|++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~--~~fD~Ii~~ 153 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL--APYDRIYVT 153 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc--CCCCEEEEc
Confidence 56789999999999999877766432 59999999999999999988776667789999987654332 589999998
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
....+++ ..+.+.|+|||++++..
T Consensus 154 ~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccccc--------HHHHHhcCcCcEEEEEE
Confidence 7766663 34678899999999865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-10 Score=118.19 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||+|||+|.++..++..... +++|+|+|+.+++.|+++.......++.++.+|+.+..+ .++||+|+++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~Vi~npP 163 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP---GGKFDLIVSNPP 163 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc---CCceeEEEECCC
Confidence 4568999999999999988876443 799999999999999999877655567888888876322 368999999654
Q ss_pred cc------ccCh------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 213 LM------FILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 213 L~------hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
.. ++.. .....++.++.++|+|||.+++... +....++.+
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------~~~~~~~~~ 227 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------YDQGEAVRA 227 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------ccHHHHHHH
Confidence 32 1111 1134788999999999999998651 123457888
Q ss_pred hhhhccccccccc
Q psy8372 269 LFSKANLKCVKSE 281 (883)
Q Consensus 269 l~~~aGf~vv~~~ 281 (883)
++.++||+.+...
T Consensus 228 ~l~~~gf~~v~~~ 240 (251)
T TIGR03534 228 LFEAAGFADVETR 240 (251)
T ss_pred HHHhCCCCceEEE
Confidence 9999999876543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=121.30 Aligned_cols=126 Identities=16% Similarity=-0.042 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. .++|+|+++.|++.|++++...+...+.+..+|+.+++... ++||+|+++..
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~--~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS--ESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc--CCCCEEEECCC
Confidence 5678999999999999887666554 59999999999999999988765555678899998876543 68999999743
Q ss_pred cc-------ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LM-------FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~-------hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.. +...+....++.+++++|||||++++..+. ...+..+++.+|| ++..
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------RIDLESLAEDAFR-VVKR 313 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------------------CCCHHHHHhhcCc-chhe
Confidence 21 111122578999999999999999988742 2356678899999 5543
|
This family is found exclusively in the Archaea. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-10 Score=116.31 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..... .+.++..|+.+..+ +++||+|+++..
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~---~~~fD~Vi~npP 110 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE---FRPFDVVVSNPP 110 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc---CCCeeEEEECCC
Confidence 45679999999999999887776655899999999999999998875543 35677788765422 358999999854
Q ss_pred ccccCh-------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 213 LMFILD-------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 213 L~hl~d-------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
....+. ..+..+++++.++|||||.+++...... ...++...+++.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---------------~~~~~~~~l~~~ 175 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---------------GVERTLTRLSEA 175 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---------------CHHHHHHHHHHC
Confidence 322111 1245788999999999999998653221 223556666666
Q ss_pred ccccc
Q psy8372 274 NLKCV 278 (883)
Q Consensus 274 Gf~vv 278 (883)
||.+.
T Consensus 176 g~~~~ 180 (223)
T PRK14967 176 GLDAE 180 (223)
T ss_pred CCCeE
Confidence 66543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=122.16 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
...+|||+|||+|.++..++..... +|+++|+|+.|++.|++++..+... .+++..|.... .+++||+|+|+..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~----~~~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD----IKGRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc----cCCCccEEEECCC
Confidence 3458999999999999988887654 7999999999999999988766433 35666676542 1368999999999
Q ss_pred ccccC---hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFIL---DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~---ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+.. .+....+++++.+.|||||.+++..+.
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 88642 234679999999999999999998753
|
|
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=108.12 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=65.5
Q ss_pred eEEEec-CeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 779 YDLVLN-GNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 779 ~Dlv~~-G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
|+-+++ ..|+.+|++|.+ ++.+.+.++..| .+...+.||+++ ..| +||++|.|||+|||+|+|++.++|.+|.+
T Consensus 232 w~~~l~~a~ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 232 WNPVLDDAFELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred EccccCceeeecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 334444 369999999999 999999999988 677889999999 788 99999999999999999999999999986
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.4e-10 Score=112.05 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
++...+.+.+..+... .+.+.-|||||||+|..+..+...|. .++|+|+|+.|++.|.++-.+. .++.+|+
T Consensus 32 IQ~em~eRaLELLalp---~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~eg-----dlil~DM 102 (270)
T KOG1541|consen 32 IQAEMAERALELLALP---GPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEG-----DLILCDM 102 (270)
T ss_pred ehHHHHHHHHHHhhCC---CCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhc-----Ceeeeec
Confidence 4556666666655431 12366899999999999987777775 4999999999999999743332 4677787
Q ss_pred CCCCCCcCCCCccEEEEccccccc---------ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFI---------LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl---------~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+-.+.. +++||.|++..+++++ |...+..++..++.+|++|++.++.-.
T Consensus 103 G~Glpfr-pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 103 GEGLPFR-PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCCC-CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 7655544 5899999998777655 223467789999999999999998863
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-10 Score=118.12 Aligned_cols=145 Identities=21% Similarity=0.161 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
.++.|||..|||.|.....|+.+|+. |+|+|+|+.+++.|.+..... ....++++++|+.++.+..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~- 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED- 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-
Confidence 56779999999999999999999885 999999999999995543220 1234578899998876543
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.++||+|+=..+|+-++.+...+..+.++++|+|||.+++.+...... .....-+..+.+++.++|. .+|++...
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~----~~~GPPf~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG----EMEGPPFSVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS----CSSSSS----HHHHHHHHT-TTEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc----CCCCcCCCCCHHHHHHHhc-CCcEEEEE
Confidence 257999999999999998889999999999999999955544332111 1112223346789999998 78887765
Q ss_pred cCCC
Q psy8372 281 EKGE 284 (883)
Q Consensus 281 ~~~~ 284 (883)
....
T Consensus 189 ~~~~ 192 (218)
T PF05724_consen 189 EEED 192 (218)
T ss_dssp EEEE
T ss_pred eccc
Confidence 5433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=119.39 Aligned_cols=95 Identities=18% Similarity=0.104 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~----~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...+|||+|||+|.++..++.... ..++|+|+|+.|++.|+++.. .+.+..+|+.+++... ++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~-----~~~~~~~d~~~lp~~~--~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP-----QVTFCVASSHRLPFAD--QSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC-----CCeEEEeecccCCCcC--CceeEEEE
Confidence 457899999999999987776532 258999999999999987643 3578889988876543 68999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
..+ + ..+++++|+|||||++++..+.
T Consensus 158 ~~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 158 IYA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ecC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 653 1 2357899999999999998754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-10 Score=113.57 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=88.5
Q ss_pred EEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcE
Q psy8372 161 DLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 237 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~ 237 (883)
+|+|+|+.|++.|+++.... ...+++++++|+.+++... ++||+|++..+++|+++ +..++++++|+|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~--~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD--CEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC--CCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeE
Confidence 48999999999998776532 1245789999999886544 78999999999999966 88999999999999999
Q ss_pred EEEEecccCCCcc------------------cccC-Ccc-------cccccchhhhhhhhhcccccccccC
Q psy8372 238 IIIKDNVASGVKN------------------EYDD-EDS-------SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 238 lvi~~~~~~~~~~------------------~~~~-~~~-------~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++.++....... .... ... ....+.+++.++++++||+.+....
T Consensus 77 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 77 VSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred EEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 9999876432110 0000 011 1224677899999999999875543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=120.26 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+..+||||||+|.++..++...+. .++|+|+++.|++.|.+++...+..++.++++|+..+.....++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4568999999999999988888654 799999999999999999887777778899999876432222479999998765
Q ss_pred ccccChHH----HHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDED----IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded----~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..|..... ...++.+++|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 54432211 1579999999999999999987
|
|
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=109.94 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=64.9
Q ss_pred EEEecC-eEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 780 DLVLNG-NEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 780 Dlv~~G-~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
+-+++. .||.+|++|. |++.+.+.++..| .+...+.||++ +..| +|+++|+|||+|||+|+|++..+|.||.+
T Consensus 259 ~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 259 NPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred chhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 333443 5999999999 9999999999988 67788999999 7778 99999999999999999999999999986
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-09 Score=110.91 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=115.3
Q ss_pred ccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHh
Q psy8372 99 TIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 178 (883)
Q Consensus 99 ~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~ 178 (883)
+.+++++ .+.+.-+..++.++++..-...........++||||+|.|..+..++. .+++|+++|.|+.|....+++.
T Consensus 60 ~iNG~Lg-RG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg- 136 (265)
T PF05219_consen 60 DINGILG-RGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKG- 136 (265)
T ss_pred hHhhhhc-CCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCC-
Confidence 3455553 567777888888888875522211122567899999999999987744 5677999999999977666542
Q ss_pred hccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC----------
Q psy8372 179 KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV---------- 248 (883)
Q Consensus 179 ~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~---------- 248 (883)
+...+..++... +.+||+|.|.++|....+ +..+|+.+++.|+|+|+++++....-..
T Consensus 137 --------~~vl~~~~w~~~--~~~fDvIscLNvLDRc~~--P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~ 204 (265)
T PF05219_consen 137 --------FTVLDIDDWQQT--DFKFDVISCLNVLDRCDR--PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSN 204 (265)
T ss_pred --------CeEEehhhhhcc--CCceEEEeehhhhhccCC--HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCC
Confidence 233444444433 258999999999998855 8999999999999999999875432111
Q ss_pred --cccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 249 --KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 249 --~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
...++.....+......+.++|+.+||+++.-.+-
T Consensus 205 ~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 205 RPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred CchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 01111222222223345558999999999865443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-09 Score=115.58 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++...+. .++.++.+|+.+..+ +++||+|+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP---GRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC---CCCccEEEECC
Confidence 4569999999999999988876543 799999999999999999887654 457889998765322 24799999973
Q ss_pred c------c-------cccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 212 V------L-------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 212 v------L-------~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
- + +|-+. +....+++.+.+.|+|||++++.... +.....+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-----------------~~~~v~~ 260 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-----------------SMEALEE 260 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------CHHHHHH
Confidence 1 1 11111 12467899999999999999987621 1246777
Q ss_pred hhhhccccccccc
Q psy8372 269 LFSKANLKCVKSE 281 (883)
Q Consensus 269 l~~~aGf~vv~~~ 281 (883)
++..+||......
T Consensus 261 ~~~~~~~~~~~~~ 273 (284)
T TIGR03533 261 AYPDVPFTWLEFE 273 (284)
T ss_pred HHHhCCCceeeec
Confidence 8888887765433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=129.30 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=69.4
Q ss_pred eecCCcccc-------chhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEec
Q psy8372 622 LILPKDLDS-------TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSW 694 (883)
Q Consensus 622 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 694 (883)
|++|+++.+ +++.++++.++++. ++.+++.|.+ + . ....++++++++|.+.+++++||+++|.+
T Consensus 309 I~vp~~~~~l~~e~~~srr~~d~l~e~aK~-~GakGL~~~~--e---l---~~~~is~e~l~~L~e~l~ak~GDll~~~a 379 (630)
T PRK04028 309 IKLPGFKGLLGREIQPGRRLGTELADYAKA-WGVGGIFHTD--E---L---PAYGITEEEVEALREALGAGENDAFILVA 379 (630)
T ss_pred EEcCCcccccccccccCHHHHHHHHHHHHH-cCCCceEEec--c---c---ccCCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 888877644 78999999999996 6778887766 1 1 13345888899999999999999999999
Q ss_pred CCchhhHhHHHHHHHHhh
Q psy8372 695 GKQEDVLSLLGMIRSESH 712 (883)
Q Consensus 695 ~~~~~~~~~lg~lr~~~~ 712 (883)
+..+.++++||+||.+++
T Consensus 380 ~k~~~v~~~LG~LR~~la 397 (630)
T PRK04028 380 DEEEKAEKALEAVIERAK 397 (630)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 998999999999999999
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-09 Score=113.37 Aligned_cols=139 Identities=16% Similarity=0.015 Sum_probs=90.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC-CCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK-PEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~FDlVv 208 (883)
..++++|||+|||+|.++..++.... ..|+++|+|+.|++...+.+... .++.++..|+.... .....++||+|+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 46788999999999999998887742 27999999998665554444322 35577888875421 011124799999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+.... + ++...++.++.++|||||.|+|... +..... ..+.....+ ++ .+.|+++||+.+....
T Consensus 208 ~Dva~---p-dq~~il~~na~r~LKpGG~~vI~ik-a~~id~---g~~pe~~f~-~e-v~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 208 ADVAQ---P-DQARIVALNAQYFLKNGGHFIISIK-ANCIDS---TAKPEVVFA-SE-VQKLKKEGLKPKEQLT 271 (293)
T ss_pred EeCCC---c-chHHHHHHHHHHhccCCCEEEEEEe-cccccc---CCCHHHHHH-HH-HHHHHHcCCceEEEEe
Confidence 98742 2 2355677899999999999999532 221100 000001111 22 3778999999775544
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-09 Score=104.57 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=105.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+.++.+++|||||+|..+..++..++. +|+++|-++++++..++++...+..++..+.+++.+..... .++|.|+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~daiFI 108 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDAIFI 108 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCEEEE
Confidence 3468889999999999999999866655 89999999999999999999888888899999988766544 27999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc-ccccccCCC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL-KCVKSEKGE 284 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf-~vv~~~~~~ 284 (883)
... -. ...+++.+...|||||++++..... .+.....+.+++.|+ +++......
T Consensus 109 GGg-~~-----i~~ile~~~~~l~~ggrlV~naitl---------------E~~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 109 GGG-GN-----IEEILEAAWERLKPGGRLVANAITL---------------ETLAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred CCC-CC-----HHHHHHHHHHHcCcCCeEEEEeecH---------------HHHHHHHHHHHHcCCceEEEEEeec
Confidence 887 33 5579999999999999999987422 234466777888888 555544433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-09 Score=114.28 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=82.0
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc--
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW-- 211 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~-- 211 (883)
.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++...... .+.++++|+.+..+ ..+||+|+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA---GQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc---CCCccEEEECCCC
Confidence 69999999999999988877653 7999999999999999998766543 47889988865322 13799999962
Q ss_pred -----------cccccCh----------HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 -----------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 -----------vL~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.|-|. +.+..++..+.+.|+|||++++..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2333321 246789999999999999999877
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=110.82 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.|++++...+..++++...|..+..+. .++||+|++...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA--YAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc--CCCcCEEEEccC
Confidence 567899999999999998665554 47999999999999999998876555678888887553332 258999999887
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++++ ..+.+.|+|||.+++...
T Consensus 154 ~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhhh--------HHHHHhcCCCcEEEEEEc
Confidence 76653 346789999999998764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=108.82 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++......+++++.+|+.+.... ....+|.|+...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~-~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ-LAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh-CCCCCCEEEEEC
Confidence 4678999999999999987775543 37999999999999999998766555678888887542111 113467765532
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. .....+++++.++|+|||.+++...
T Consensus 118 ----~--~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 ----G--RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----C--cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 1 2356899999999999999999874
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=118.59 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
.....+++.+.... +++.+|||+|||+|.++..++..... +|+|+|+|+.|++.|++++..... ++.++++|+.+
T Consensus 236 peTE~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 236 PETEHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFD 311 (423)
T ss_pred ccHHHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhc
Confidence 33444555443221 24569999999999999877765443 799999999999999999876543 56888998865
Q ss_pred CCCCcCCCCccEEEEcccccccCh-------------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILD-------------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVK 249 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~d-------------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~ 249 (883)
..... .++||+|+|+... ++. +-+..++..+.+.|+|||.+++....
T Consensus 312 ~~l~~-~~~FDLIVSNPPY--I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----- 383 (423)
T PRK14966 312 TDMPS-EGKWDIIVSNPPY--IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----- 383 (423)
T ss_pred ccccc-CCCccEEEECCCC--CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----
Confidence 32211 2579999997632 110 12457788888999999998876521
Q ss_pred ccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 250 NEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 250 ~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
...+...+++.+.||..+..
T Consensus 384 -----------~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 384 -----------DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred -----------cHHHHHHHHHHHCCCcEEEE
Confidence 13557888888889876544
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=94.50 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=82.4
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 216 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl 216 (883)
+|||+|||+|.++..++.....+++++|+++.+++.+++...........+...|..+.... ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-ADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-cCCceEEEEEccceeeh
Confidence 58999999999998777644458999999999999998544433445567888888876541 13689999999999883
Q ss_pred ChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 217 LDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 217 ~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+....++..+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 245889999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-09 Score=112.52 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..... .|+|+|+|+.+++.|+++........+.++.+|+.+... .++||+|+++.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~np 183 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNP 183 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---CCceeEEEECC
Confidence 45679999999999999988877643 799999999999999998873334456888888754322 35899999964
Q ss_pred ccc------ccCh------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhh
Q psy8372 212 VLM------FILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 267 (883)
Q Consensus 212 vL~------hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~ 267 (883)
... .+.. +....+++++.++|+|||++++... +.....+.
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g----------------~~~~~~~~ 247 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG----------------YDQGEAVR 247 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------------chHHHHHH
Confidence 221 0100 2246788999999999999998541 11244688
Q ss_pred hhhhhcccccccc
Q psy8372 268 LLFSKANLKCVKS 280 (883)
Q Consensus 268 ~l~~~aGf~vv~~ 280 (883)
+++.+.||..+..
T Consensus 248 ~~l~~~gf~~v~~ 260 (275)
T PRK09328 248 ALLAAAGFADVET 260 (275)
T ss_pred HHHHhCCCceeEE
Confidence 8898899875544
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-09 Score=111.29 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=93.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++...+ .+++++|+.+.......++||+|+++.-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999887766433 79999999999999999987543 36788887664332123579999997632
Q ss_pred c------ccCh------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhh
Q psy8372 214 M------FILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 269 (883)
Q Consensus 214 ~------hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 269 (883)
. .+++ +-+..++..+.++|||||.+++.... ....+...+
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----------------~~~~~v~~~ 227 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----------------RQAPLAVEA 227 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------------chHHHHHHH
Confidence 1 1111 11457888899999999999987621 123467788
Q ss_pred hhhcccccccccCC
Q psy8372 270 FSKANLKCVKSEKG 283 (883)
Q Consensus 270 ~~~aGf~vv~~~~~ 283 (883)
+++.||........
T Consensus 228 l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 228 FARAGLIARVASSE 241 (251)
T ss_pred HHHCCCCceeeEcc
Confidence 88888876554443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=113.01 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
...+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++.. .++++++|+.++... .+||+|+++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----~v~~v~~D~~e~~~~---~kFDlIIsNPP 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----EAEWITSDVFEFESN---EKFDVVISNPP 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----CCEEEECchhhhccc---CCCcEEEEcCC
Confidence 35699999999999988776654 3479999999999999988643 457889998876532 58999999999
Q ss_pred ccccChHH------------------HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDED------------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded------------------~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
++|.+.++ ..++++....+|+|+|.+.+.- ..... + ....++.++.++++++|
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss~~~---y-----~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SGRPY---Y-----DGTMKSNKYLKWSKQTG 206 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-ecccc---c-----cccCCHHHHHHHHHhcC
Confidence 98865432 2456777788889999766652 11111 1 11235779999999999
Q ss_pred cccc
Q psy8372 275 LKCV 278 (883)
Q Consensus 275 f~vv 278 (883)
|..-
T Consensus 207 ~~~~ 210 (279)
T PHA03411 207 LVTY 210 (279)
T ss_pred cEec
Confidence 9864
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-09 Score=116.27 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc----------CCCccEEEccCCCCC----CCc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----------DKLDKCYNVGIQDFK----PED 199 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~----------~~~~~~~~~d~~~~~----~~~ 199 (883)
++.+|||+|||-|..+.-+...+...++|+|+|...|+.|+++..... .-...++.+|...-. ...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999997777888888899999999999999999983211 012255666654321 111
Q ss_pred CCCCccEEEEccccccc--ChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 200 LNIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl--~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
....||+|-|..+|||. +.+....+|+++...|+|||+++.+.+...
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 12589999999999998 335577899999999999999999997643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-09 Score=112.53 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+...+|||+|||+|.++..++.+.. .+++|||+.+.|.+.|+++...+ ...++++++.|+.++.......+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 3477999999999999997776644 48999999999999999998865 345679999999998765544579999998
Q ss_pred ccccccCh----------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 211 WVLMFILD----------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 211 ~vL~hl~d----------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.-..-... -+...+++.+.++|||||.+.+.-... ...++..++.+.+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e----------------rl~ei~~~l~~~~ 186 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE----------------RLAEIIELLKSYN 186 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------HHHHHHHHHHhcC
Confidence 75433221 137889999999999999999987321 2447788888878
Q ss_pred ccccccc
Q psy8372 275 LKCVKSE 281 (883)
Q Consensus 275 f~vv~~~ 281 (883)
|...+..
T Consensus 187 ~~~k~i~ 193 (248)
T COG4123 187 LEPKRIQ 193 (248)
T ss_pred CCceEEE
Confidence 7765443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=109.68 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~F 204 (883)
.++.+|||+|||+|.++..+++... ..|+|+|+++ |. ....+.++++|+.+... ...+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 5678999999999999998887743 3799999998 21 12335789999887530 0113689
Q ss_pred cEEEEcccccccChH--H-------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 205 DVIWIQWVLMFILDE--D-------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 205 DlVvs~~vL~hl~de--d-------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+|+|+.+.++.... + ...+++++.++|||||.+++..+.
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999998876654321 1 246899999999999999998743
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=128.30 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=107.2
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~ 190 (883)
++++..+.++..+ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..++.. .++++++
T Consensus 524 lDqr~~R~~~~~~-------~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~ 596 (702)
T PRK11783 524 LDHRPTRRMIGQM-------AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQA 596 (702)
T ss_pred HHHHHHHHHHHHh-------cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEc
Confidence 4677777777776 357799999999999999888877778999999999999999999876543 5789999
Q ss_pred cCCCCCCCcCCCCccEEEEccccc-------cc--ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccc
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWVLM-------FI--LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 261 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~vL~-------hl--~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~ 261 (883)
|+.++.... .++||+|++..--. .. ...+...++..+.++|+|||.+++......
T Consensus 597 D~~~~l~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~--------------- 660 (702)
T PRK11783 597 DCLAWLKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG--------------- 660 (702)
T ss_pred cHHHHHHHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------
Confidence 987653211 35899999964210 11 013467889999999999999988763221
Q ss_pred cchhhhhhhhhcccccccccC
Q psy8372 262 SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~ 282 (883)
...-.+.+.++|+.+.....
T Consensus 661 -~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 661 -FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred -CChhHHHHHhCCCeEEEEec
Confidence 11126677778877665543
|
|
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-08 Score=103.46 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=60.3
Q ss_pred CeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 785 GNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 785 G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
..||++-++|. |.+.+.+.++..| .+...+.||+++ ..| +||++|.|||+|||+|+|++..+|.+|.+
T Consensus 246 a~ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 246 AFELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred eeeeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 36999999997 5667777788888 677889999998 778 99999999999999999999999999986
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-09 Score=110.78 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~ 196 (883)
++-+++.+.. ..+.+|||+|||.|.++..+++..+. +++.+|.+..+++.|++++..+...+..+...|..+-.
T Consensus 147 S~lLl~~l~~-----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300)
T COG2813 147 SRLLLETLPP-----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300)
T ss_pred HHHHHHhCCc-----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc
Confidence 4444555532 34459999999999999988888765 89999999999999999999775554345555554322
Q ss_pred CCcCCCCccEEEEcccccccCh---HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~d---ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.++||+|+|+.-+|--.. .-..+++..+.+.|++||.|.|..+
T Consensus 222 ----~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 ----EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ----cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 248999999999874432 1134899999999999999999985
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.3e-09 Score=117.65 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEE
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCY 188 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~ 188 (883)
..++++..+..+..+ .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++. ..++++
T Consensus 204 ~flDqr~~R~~~~~~-------~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i 276 (396)
T PRK15128 204 YYLDQRDSRLATRRY-------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_pred cChhhHHHHHHHHHh-------cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 335677777777776 35789999999999999877766666899999999999999999987654 357899
Q ss_pred EccCCCCCCC--cCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 189 NVGIQDFKPE--DLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 189 ~~d~~~~~~~--~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++|+.++... ...++||+|++..-...-.. ..+..++..+.++|+|||.++...+
T Consensus 277 ~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998775321 11358999999854311111 1355667788999999999998764
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=103.59 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~ 192 (883)
.....+.|..++. ..+.+|||||||||..+.+++...+. ...-.|+++..+...+........ +....+..|+
T Consensus 11 k~pIl~vL~~~l~-----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLP-----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhC-----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 3344445555532 22336999999999999999888766 566678888887666665554433 3345667777
Q ss_pred CCCCCCc------CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------cccc----C-C
Q psy8372 193 QDFKPED------LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------NEYD----D-E 255 (883)
Q Consensus 193 ~~~~~~~------~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~~~~----~-~ 255 (883)
.+..... ..++||+|+|.+++|-++.+....+++.+.++|+|||.|++..+...+.. ..++ . .
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 6542211 23689999999999999988899999999999999999999887654322 1122 2 2
Q ss_pred cccccccchhhhhhhhhcccccccc
Q psy8372 256 DSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 256 ~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..+-+++.+++.++..++||+....
T Consensus 166 p~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 166 PEWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred CCcCccCHHHHHHHHHHCCCccCcc
Confidence 2345678889999999999997643
|
The function of this family is unknown. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=115.06 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=28.2
Q ss_pred cEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
|+|.|++|||+|..|.+|.|||+|+|.-+.
T Consensus 344 k~fsigrVfR~d~iDatH~~eFhQ~EG~vv 373 (492)
T PLN02853 344 RYFSIDRVFRNEAVDRTHLAEFHQVEGLVC 373 (492)
T ss_pred EEEeccceecCCCCCcccCccceeEEEEEE
Confidence 999999999999999999999999997654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=112.27 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=91.7
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc-
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV- 212 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v- 212 (883)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+. ..++++++|+.+..+ +++||+|+++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC---CCCccEEEECCCC
Confidence 68999999999999988877543 799999999999999999887643 357889999765332 247999999731
Q ss_pred ------------ccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 213 ------------LMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 213 ------------L~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
++|-+. +....+++.+.+.|+|||.+++.... +......++
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-----------------~~~~~~~~~ 274 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-----------------SRVHLEEAY 274 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------CHHHHHHHH
Confidence 112111 22468899999999999999986521 122456666
Q ss_pred hhccccccccc
Q psy8372 271 SKANLKCVKSE 281 (883)
Q Consensus 271 ~~aGf~vv~~~ 281 (883)
...|+......
T Consensus 275 ~~~~~~~~~~~ 285 (307)
T PRK11805 275 PDVPFTWLEFE 285 (307)
T ss_pred hhCCCEEEEec
Confidence 66666554443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=108.25 Aligned_cols=102 Identities=28% Similarity=0.345 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++..+|||||+|+|.++..++...+. +++..|. |.+++.+++ ..+++++.+|+.+ +.+ . +|+|++.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~~P--~-~D~~~l~~ 166 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--PLP--V-ADVYLLRH 166 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--CCS--S-ESEEEEES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh--hhc--c-ccceeeeh
Confidence 45678999999999999999988777 8999997 889999888 4567889999872 222 3 99999999
Q ss_pred cccccChHHHHHHHHHHHHHhccC--cEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKN--GIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPG--G~lvi~~~~~~ 246 (883)
+||++++++...+|++++++|+|| |+|+|.+....
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 999999999999999999999999 99999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=104.67 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.+|||||||+|+.+.-+ ++-..+|+.+|..+...+.|++++...+..++.+.++|.....+.. .+||.|+...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvl-a~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~--aPyD~I~Vta 146 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVL-ARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE--APYDRIIVTA 146 (209)
T ss_pred CCCCCeEEEECCCchHHHHHH-HHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC--CCcCEEEEee
Confidence 367899999999999999744 4444479999999999999999999888777889999988765554 6899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
....+|. .+.+.||+||++++-.-
T Consensus 147 aa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 9888865 25678999999999774
|
|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=109.91 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceec--cCCCCcee---------eEe--cCHHHHHHHHHccC
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVP--THEPNKFY---------SLV--QSPQQLKQLLMVGS 415 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~--~~~~~~~~---------~L~--~Spql~kq~l~~~~ 415 (883)
.-..++..++++| -+.||.|+..|-+...-.+ .|--++-+ .+.....+ -|+ +||=....|.--..
T Consensus 112 pl~~~~e~i~~iF-~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~ 190 (335)
T COG0016 112 PLTQTIEEIEDIF-LGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAK 190 (335)
T ss_pred hHHHHHHHHHHHH-HHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCC
Confidence 3356778888888 4799999999977543222 11111111 11111122 333 56644444321111
Q ss_pred -CCcEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHH
Q psy8372 416 -VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCY 464 (883)
Q Consensus 416 -~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~ 464 (883)
=-|+|.+|+|||+|..+.+|.|||+|+|-=.... ++.+++.+++++++.
T Consensus 191 ~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~ 242 (335)
T COG0016 191 IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKK 242 (335)
T ss_pred CCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHH
Confidence 2399999999999999999999999999644332 244444444444433
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=115.84 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.0
Q ss_pred CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
-|+|+|++|||+|..+.+|.+||+|+|..+...+
T Consensus 358 ~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred ceEEecCCEecCCCCCCCcCceeEEEEEEEEeCC
Confidence 3999999999999999999999999999887644
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=111.17 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
+.+.+||++|||+|..+..+++. +..+|++||+++.+++.|++.+... ...+++++..|+..+... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 35679999999999999988876 4558999999999999999987642 245668888998765433 2468999
Q ss_pred EEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|++...-.+.+... ...+++.+++.|+|||.+++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99975444332222 2578999999999999988754
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=106.41 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
......+++.+. ..++.+|||||||+|+.+..++.. +.. .|+++|..+.+++.|++++......++.++.+|.
T Consensus 58 P~~~a~~l~~L~-----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALD-----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTT-----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred HHHHHHHHHHHh-----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 334444555543 368899999999999999755554 322 6999999999999999999988777888999997
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
....+.. .+||.|++......+|. .+.+.||+||+|++-..
T Consensus 133 ~~g~~~~--apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWPEE--APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTGGG---SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred hhccccC--CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 7654443 68999999998877643 26677999999999764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-09 Score=100.20 Aligned_cols=81 Identities=25% Similarity=0.431 Sum_probs=72.2
Q ss_pred eecCCc-cccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhh
Q psy8372 622 LILPKD-LDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDV 700 (883)
Q Consensus 622 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 700 (883)
|++|++ ..+||+++++|.++|++ ++..++.|++++++ +|.+++.|++++++.++|.+.+++++||+++|.+|+...+
T Consensus 14 i~vp~~~~~~srk~id~l~~~ak~-~ga~gL~~ikv~~~-~~~s~i~kfl~e~~~~~l~~~~~a~~GD~ll~~Ag~~~~v 91 (95)
T PF02938_consen 14 IVVPGGAAKLSRKQIDKLEEFAKK-FGAKGLAWIKVEEG-ELKSPIAKFLSEEELKALIERLGAKPGDLLLFVAGKKEIV 91 (95)
T ss_dssp EEETTG-TTTTHCCCCCCCCHHHH-CCHCHCCCEEESTC-EEECTTCCCCHHHHHHHHHHHTT--TTEEEEEEEESHHHH
T ss_pred EEeCCccccCCHHHHHHHHHHHHH-hCCCCceeeeEcCC-cccCcccccCCHHHHHHHHHHhCCCCCCEEEEECCCHHHH
Confidence 999996 47999999999999997 89999999999884 5999999999999999999999999999999999998777
Q ss_pred HhHH
Q psy8372 701 LSLL 704 (883)
Q Consensus 701 ~~~l 704 (883)
+++|
T Consensus 92 ~~~L 95 (95)
T PF02938_consen 92 NKAL 95 (95)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 7654
|
The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=110.74 Aligned_cols=100 Identities=21% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..... .|+++|+++.+++.|++++...+..++.++.+|..+..+.. ++||+|++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCccEEEEC
Confidence 46789999999999999877765432 69999999999999999888766666788888876654433 579999998
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++++ ..+.+.|+|||.+++..
T Consensus 157 ~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 7665543 23567899999998865
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-08 Score=106.10 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=91.9
Q ss_pred eEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
+|||+|||+|..+..++..+.. +|+|+|+|+.+++.|++++..++..++.+++.|+.+. ..++||+|+|+.- +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~----~~~~fDlIVsNPP--Y 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP----LRGKFDLIVSNPP--Y 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc----cCCceeEEEeCCC--C
Confidence 7999999999999988888775 8999999999999999999987643333444443321 1358999999762 2
Q ss_pred cCh-------------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 216 ILD-------------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 216 l~d-------------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
++. +-...++..+.+.|+|||.+++..-. ...+...+++
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~----------------~q~~~v~~~~ 250 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL----------------TQGEAVKALF 250 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC----------------CcHHHHHHHH
Confidence 211 13678889999999999999988721 1356788999
Q ss_pred hhcc-ccccccc
Q psy8372 271 SKAN-LKCVKSE 281 (883)
Q Consensus 271 ~~aG-f~vv~~~ 281 (883)
.+.| |..+...
T Consensus 251 ~~~~~~~~v~~~ 262 (280)
T COG2890 251 EDTGFFEIVETL 262 (280)
T ss_pred HhcCCceEEEEE
Confidence 9999 5544443
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=109.26 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC------CccE
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK------LDKC 187 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~------~~~~ 187 (883)
..+....++...+.... .+++..+||+|||-|.-++..-+.|...++|+|+++..++.|+++...-... .+.|
T Consensus 98 ~lRnfNNwIKs~LI~~y-~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 98 FLRNFNNWIKSVLINLY-TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred ehhhhhHHHHHHHHHHH-hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 34444455555543322 2467789999999999988888888889999999999999999988754211 1367
Q ss_pred EEccCCCCC------CCcCCCCccEEEEccccccc--ChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 188 YNVGIQDFK------PEDLNIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 188 ~~~d~~~~~------~~~~~~~FDlVvs~~vL~hl--~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+|...-. +.+ .+||+|-|..++|+. +.+..+.+|+++++.|||||+++-+.+..
T Consensus 177 ~~~Dc~~~~l~d~~e~~d--p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKD--PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred EEeccchhHHHHhccCCC--CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 777764321 122 249999999999976 33667899999999999999999988643
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=112.95 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|..+..++..+. .+|+++|+|+.+++.+++++...+.. +.++++|+.+......+++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCEEEECC
Confidence 4678999999999999998888765 37999999999999999998876544 478888887653221135799999533
Q ss_pred c------ccc------c-ChH-------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 V------LMF------I-LDE-------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 v------L~h------l-~de-------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. +.+ . ..+ ....++..+.++|||||++++++++
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 111 1 111 1347899999999999999999864
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=105.93 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=73.2
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
.++|+|||+|..+. .++..+.+|+|+|+|+.||+.|++......... ......+..++.-. +++.|+|+|..++|+
T Consensus 36 ~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~--e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 36 LAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG--EESVDLITAAQAVHW 112 (261)
T ss_pred eEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--CcceeeehhhhhHHh
Confidence 78999999996665 555557889999999999999988765432111 12222222333222 479999999999999
Q ss_pred cChHHHHHHHHHHHHHhccCc-EEEEEec
Q psy8372 216 ILDEDIIKFLNLCKQILNKNG-IIIIKDN 243 (883)
Q Consensus 216 l~ded~~~~l~~~~r~LKPGG-~lvi~~~ 243 (883)
+. +..+.+.++|+||+.| .+++-..
T Consensus 113 Fd---le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 113 FD---LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hc---hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 84 6789999999998766 6666553
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=116.07 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++..... ..+.++.+|+.+... .++||+|+|+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CCCccEEEECC
Confidence 3468999999999999877766433 799999999999999999876543 356788888754322 24899999964
Q ss_pred c--------------ccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhh
Q psy8372 212 V--------------LMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 267 (883)
Q Consensus 212 v--------------L~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~ 267 (883)
. ..|-|. +.+..+++.+.++|+|||.+++... ....+...
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig----------------~~q~~~v~ 278 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG----------------FKQEEAVT 278 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC----------------CchHHHHH
Confidence 2 111110 1245678899999999999988641 11345778
Q ss_pred hhhhhcccccccc
Q psy8372 268 LLFSKANLKCVKS 280 (883)
Q Consensus 268 ~l~~~aGf~vv~~ 280 (883)
+++.+.||..+..
T Consensus 279 ~~~~~~g~~~~~~ 291 (506)
T PRK01544 279 QIFLDHGYNIESV 291 (506)
T ss_pred HHHHhcCCCceEE
Confidence 8888889876543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-08 Score=101.31 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~F 204 (883)
.++.+|||+|||+|.++..++..... +|+++|+|+.+ . ...+.+++.|+.+... ....++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----IENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----CCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 57889999999999999877766422 69999999864 1 1234677788765321 0113579
Q ss_pred cEEEEcccc--------cccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL--------~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|++..+. +|... +....++..++++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999986532 22211 224689999999999999999975
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-08 Score=113.04 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...+..+++++..|+.++.+ +++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D 325 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---EEQPDAILLD 325 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---CCCCCEEEEc
Confidence 467899999999999988776642 23799999999999999999987766667889999887653 2589999963
Q ss_pred c------ccc-------ccChH-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLM-------FILDE-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~-------hl~de-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++. +...+ ....+|.++.++|||||+++.++++.
T Consensus 326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 111 11111 13468999999999999999998654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-08 Score=112.59 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVv 208 (883)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+..++.++.+|+.++... ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 5678999999999999988877632 37999999999999999999877666678899998876421 1136899999
Q ss_pred Ec------ccccccCh-------HH-------HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 IQ------WVLMFILD-------ED-------IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 s~------~vL~hl~d-------ed-------~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+. .++++-++ ++ ...++.++.++|||||+++.++++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 73 34444332 11 3688999999999999999988543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=107.13 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++...+. +++++|+++.+++.|++.+.... ..+++++.+|+.++.... +++||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEEe
Confidence 45679999999999999888776544 79999999999999999876432 356788889886653322 3589999985
Q ss_pred ccc-cccChH-HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVL-MFILDE-DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL-~hl~de-d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..- ...+.. ....+++++++.|+|||.+++..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 311 111110 12589999999999999999965
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-08 Score=111.53 Aligned_cols=150 Identities=14% Similarity=0.146 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......+++.+.... ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...+..+++++++|+.+
T Consensus 279 ~~~~e~l~~~vl~~l-~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 279 AQVNQKMVARALEWL-DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHHHHh-cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 333444444443221 22456799999999999999777665 5799999999999999999887665667899999875
Q ss_pred CCCC--cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 195 FKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 195 ~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.... ..+++||+|++..--.- ....+..+.+ ++|++.++++....+ ..+ ++. .|.+
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCnp~t------------laR---Dl~-~L~~ 414 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCNPAT------------LAR---DAG-VLVE 414 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeChHH------------hhc---cHH-HHhh
Confidence 4321 11257999998654222 2244544444 689999999873221 112 222 3457
Q ss_pred cccccccccCCCCCcc
Q psy8372 273 ANLKCVKSEKGEFSPM 288 (883)
Q Consensus 273 aGf~vv~~~~~~~~P~ 288 (883)
+||++...+.-+.||.
T Consensus 415 ~gY~l~~i~~~DmFP~ 430 (443)
T PRK13168 415 AGYRLKRAGMLDMFPH 430 (443)
T ss_pred CCcEEEEEEEeccCCC
Confidence 8999999988888873
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.4e-08 Score=104.46 Aligned_cols=110 Identities=18% Similarity=0.074 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+..++.++..|...+.... +.||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D 147 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLD 147 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEc
Confidence 5678999999999999987776532 379999999999999999998776666778888877654322 469999963
Q ss_pred c------cccccC-------hH-------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 W------VLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~------vL~hl~-------de-------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. ++.+-+ .+ ....+|..+.++|||||+|+.++.+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 222111 11 1346999999999999999988854
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.6e-08 Score=111.35 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+.+++... ..+|+++|+|+.+++.+++++...+..++.+...|+..+.... +++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV-QDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh-hccCCEEEEC
Confidence 567899999999999998887763 2379999999999999999988776666788889987764221 3589999973
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++.+-++ + ...++|.++.+.|||||.++.++++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2 2221111 1 23577999999999999999998654
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=110.90 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+... +.+..+|..........++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 4678999999999999988877543 379999999999999999988765441 22245555433321113589999963
Q ss_pred ------ccccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 ------WVLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ------~vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++++.++ + ....+|.++.++|||||.++.++++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 35555433 1 13679999999999999999998654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=104.76 Aligned_cols=114 Identities=29% Similarity=0.330 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C-C-ccceeccCCCCceeeEecCHHHHHHHHHcc----CCCcEEE
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G-A-REFVVPTHEPNKFYSLVQSPQQLKQLLMVG----SVDRYFQ 421 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g-a-~~f~v~~~~~~~~~~L~~Spql~kq~l~~~----~~~rvf~ 421 (883)
|+.+.+.+|++| .+.||.||.||+++... .. | . ....+.....+..++|++|+...+...+.. .--|+||
T Consensus 2 ~~~~~~~~r~~l-~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 2 RSKIEQKLRRFM-AELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred HHHHHHHHHHHH-HHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 678999999999 68999999999997642 11 1 1 111122223356779999998765544443 3349999
Q ss_pred EeeceecCCCCC--CCCcceecccccccCCC------HHHHHHHHHHHHHHH
Q psy8372 422 IARCYRDESTRP--DRQPEFTQLDIELSFTT------RDDVMRLIEELLCYC 465 (883)
Q Consensus 422 I~~~FR~E~~~~--~r~~EFt~le~e~~~~~------~~dvm~~~E~li~~i 465 (883)
||+|||.|.... .|..||+|+++++.+.+ +.+++.++++++..+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 999999997654 56699999999999874 466777777776543
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-08 Score=99.49 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.|++++...+..++++++.|+.++.... .++||+|+++.-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEECCCC
Confidence 467999999999999987777777789999999999999999988765556788999887643221 2479999998874
Q ss_pred cccChHHHHHHHHHHHH--HhccCcEEEEEecc
Q psy8372 214 MFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 244 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~ 244 (883)
..- -...++..+.. +|+|+|.+++....
T Consensus 132 ~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKG---LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 321 12344444444 47899988888743
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=110.33 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+...+.++++|+.++.... .++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF-AEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh-cccCCEEEEc
Confidence 467899999999999998888763 2379999999999999999988776556788999987754221 2589999975
Q ss_pred cc------ccccCh-------HH-------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WV------LMFILD-------ED-------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~v------L~hl~d-------ed-------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.. +.+-++ ++ ...++..+.++|||||.++.++..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 32 221111 11 246899999999999999987753
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=104.76 Aligned_cols=129 Identities=13% Similarity=0.024 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ .+|+|+|.|+.|++.|++++...+..+++++++|+.++.... .+.||+|++...-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeEEEECCCC
Confidence 45799999999999999888766 469999999999999999988776666899999998764321 2479999998542
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
.-+ ...+.++...++|++.++++..... . ..++..+ .|+++.....-..||
T Consensus 251 ~G~-----~~~~~~~l~~~~~~~ivyvsc~p~t------------~---~rd~~~l---~~y~~~~~~~~DmFP 301 (315)
T PRK03522 251 RGI-----GKELCDYLSQMAPRFILYSSCNAQT------------M---AKDLAHL---PGYRIERVQLFDMFP 301 (315)
T ss_pred CCc-----cHHHHHHHHHcCCCeEEEEECCccc------------c---hhHHhhc---cCcEEEEEEEeccCC
Confidence 211 1222233344678888887763221 1 1233333 588888888777776
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=100.00 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC----cCCCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE----DLNIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~----~~~~~FD 205 (883)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+. ..++++.+|+.+..+. ...++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3567999999999998877765432 3899999999999999999887743 4578889988764221 1125899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
+|++... .+.+..++..+.+.|+|||.+++....+++
T Consensus 147 ~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G 183 (234)
T PLN02781 147 FAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTLWFG 183 (234)
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCCcCC
Confidence 9988542 234678899999999999998887765554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=103.06 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEcc
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVG 191 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d 191 (883)
...+++.++.... .++..+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+... ...+++++.+|
T Consensus 76 ~Y~e~l~h~~l~~--~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 76 AYQEMITHLPLCS--IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHhh--CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 3444555543211 2456799999999999999887653 347999999999999999987642 24567888898
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..+.....+++||+|++...-.+.+... -..+++.++++|+|||.+++..
T Consensus 154 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 154 GVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 76543221135899999965443332211 3478999999999999987654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=101.74 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.+||+||||+|.++..+++.. ..+++++|+++.+++.|++.+... ....++++..|...+.... +++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEE
Confidence 44599999999999998887765 458999999999999999976543 1234566666654432211 35899999
Q ss_pred EcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.......+... ...+++.+++.|+|||.+++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 976532222222 3578999999999999999873
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-07 Score=94.22 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++... ..+++++.+|+.++.... ..||.|+++..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--~~~d~vi~n~P 86 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--LQPYKVVGNLP 86 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc--cCCCEEEECCC
Confidence 456799999999999999888874 4699999999999999988753 345688999998876543 46999998765
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. |+..+.+..++.... +.++|.+++..-
T Consensus 87 y-~~~~~~i~~~l~~~~--~~~~~~l~~q~e 114 (169)
T smart00650 87 Y-NISTPILFKLLEEPP--AFRDAVLMVQKE 114 (169)
T ss_pred c-ccHHHHHHHHHhcCC--CcceEEEEEEHH
Confidence 4 443333334433221 447888877653
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.1e-07 Score=95.79 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHhhccCCCc-cEEEccCCCCCCC-cCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDCDKLD-KCYNVGIQDFKPE-DLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---~~V~gvD~S~~~le~A~~~~~~~~~~~~-~~~~~d~~~~~~~-~~~~~FDlV 207 (883)
...-+||||.||.|.....++.... .+|...|.|+..++..++.+.+.+...+ +|.+.|+.+.... ......+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4567999999999998888877654 3899999999999999999998866555 9999998765321 112367999
Q ss_pred EEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCCcc----ccc-C---Cccc-ccccchhhhhhhhhccccc
Q psy8372 208 WIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN----EYD-D---EDSS-VVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 208 vs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~----~~~-~---~~~~-~~~s~~~~~~l~~~aGf~v 277 (883)
+.+..++.++|.+ +...++.+++++.|||+++.+...++.-.. .+. + ..|. ..++..+..++++.|||+-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9999999999855 556899999999999999998865554321 111 1 2232 2467889999999999997
Q ss_pred ccccC
Q psy8372 278 VKSEK 282 (883)
Q Consensus 278 v~~~~ 282 (883)
+....
T Consensus 294 ~~q~I 298 (311)
T PF12147_consen 294 IDQRI 298 (311)
T ss_pred hhhee
Confidence 65543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-07 Score=95.67 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..+++||||.|.|+|.++.+++.. +. .+|+.+|+-+..++.|++++...+. +++.+...|+.+..... .||+|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~---~vDav~ 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE---DVDAVF 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc---ccCEEE
Confidence 368999999999999999988753 44 3899999999999999999998643 33677778887765443 899998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.- +++ +-.++..++++|||||.+++..++.
T Consensus 169 LD-----mp~--PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 169 LD-----LPD--PWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred Ec-----CCC--hHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 74 455 8899999999999999999988654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-07 Score=102.96 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++++......+++++.+|+.++.... ..+||+|++..--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEEECCCC
Confidence 45699999999999999888765 569999999999999999998776557789999987654321 2469999998764
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..+. ..++..+. .++|++.++++.... .. ..++..+ .||++.....-..||
T Consensus 311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p~------------Tl---aRDl~~L---~gy~l~~~~~~DmFP 361 (374)
T TIGR02085 311 RGIG----KELCDYLS-QMAPKFILYSSCNAQ------------TM---AKDIAEL---SGYQIERVQLFDMFP 361 (374)
T ss_pred CCCc----HHHHHHHH-hcCCCeEEEEEeCHH------------HH---HHHHHHh---cCceEEEEEEeccCC
Confidence 3332 24444454 478999999887321 11 2233333 689998888888887
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-07 Score=114.97 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhcc----------------CCCccEEEccCCCCCC
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC----------------DKLDKCYNVGIQDFKP 197 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~----------------~~~~~~~~~d~~~~~~ 197 (883)
+.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++..+. ..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999998888765 389999999999999999987542 1357889999876442
Q ss_pred CcCCCCccEEEEccc--------------ccccC-------------------h---HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 198 EDLNIKYDVIWIQWV--------------LMFIL-------------------D---EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 198 ~~~~~~FDlVvs~~v--------------L~hl~-------------------d---ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.. ..+||+|+++.- ..|-| . +-+..++.++.+.|+|||.+++.
T Consensus 199 ~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21 136999998752 11100 0 11467888999999999999987
Q ss_pred ecccCCCcccccCCcccccccchhhh-hhhhhcccccccc
Q psy8372 242 DNVASGVKNEYDDEDSSVVRSLPQFC-LLFSKANLKCVKS 280 (883)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~l~~~aGf~vv~~ 280 (883)
.-. ...+... +++++.||+.+..
T Consensus 278 iG~----------------~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 278 MGG----------------RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred ECc----------------cHHHHHHHHHHHHCCCCeeEE
Confidence 621 1234666 5888888877644
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=102.10 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHH--Hh-----hccCCC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEE--IL-----KDCDKL 184 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~--~~-----~~~~~~ 184 (883)
.+.....+.+.+.... ..+...+||++|||+|..+..+++.. ..+|++||+++.|++.|++. +. .....+
T Consensus 131 ~DE~iYHE~Lvhp~m~--~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpR 208 (374)
T PRK01581 131 VDEQIYHEALVHPIMS--KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNR 208 (374)
T ss_pred ccHHHHHHHHHHHHHH--hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCc
Confidence 4455555555554322 12445699999999999988777754 34899999999999999962 11 112456
Q ss_pred ccEEEccCCCCCCCcCCCCccEEEEccccc---ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccc
Q psy8372 185 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLM---FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 261 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~---hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~ 261 (883)
++++..|+.++.... .++||+|++...-. ....-.-..+++.+++.|+|||.+++...... ....
T Consensus 209 V~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-----------~~~~ 276 (374)
T PRK01581 209 VNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-----------DAPL 276 (374)
T ss_pred eEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-----------hhHH
Confidence 788888888764332 36899999974211 11111125789999999999999988742110 0000
Q ss_pred cchhhhhhhhhccccccccc
Q psy8372 262 SLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~ 281 (883)
......+.++++|+.+....
T Consensus 277 ~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 277 VYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred HHHHHHHHHHHhCCceEEEE
Confidence 01135677888888766433
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=97.19 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g----~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++.. .+.++.+|+..... +++||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 36799999999999998776642 2379999999999999998754 24788888876543 358999999
Q ss_pred cccccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcc---cccccchhhhhhhhhcccc
Q psy8372 210 QWVLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDS---SVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 210 ~~vL~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~---~~~~s~~~~~~l~~~aGf~ 276 (883)
+.-+.-... .-...++.++.+++++|+. ++-. +.-+.. +....+ .-..+...+..+.++.|+.
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~-~~~~~~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQ-MSANFR--YSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCc-ccccCc--ccCccceeeccCcccHHHHHHHHhcCee
Confidence 886652211 1245688899996666664 3211 111111 110000 0011234777888888886
Q ss_pred c
Q psy8372 277 C 277 (883)
Q Consensus 277 v 277 (883)
.
T Consensus 197 ~ 197 (241)
T PHA03412 197 M 197 (241)
T ss_pred e
Confidence 4
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=95.43 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=84.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
........+++.+.. .++...|.|+|||.+.++.. +..+. .|+..|+-.. +-.+..+|+
T Consensus 55 WP~nPvd~iI~~l~~----~~~~~viaD~GCGdA~la~~-~~~~~-~V~SfDLva~---------------n~~Vtacdi 113 (219)
T PF05148_consen 55 WPVNPVDVIIEWLKK----RPKSLVIADFGCGDAKLAKA-VPNKH-KVHSFDLVAP---------------NPRVTACDI 113 (219)
T ss_dssp SSS-HHHHHHHHHCT----S-TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------STTEEES-T
T ss_pred CCCCcHHHHHHHHHh----cCCCEEEEECCCchHHHHHh-cccCc-eEEEeeccCC---------------CCCEEEecC
Confidence 344555666666642 24567899999999999963 34334 4999997531 124688999
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
...+... ++.|++++..+|+-. +...++.++.|+|||||.|.|.+... ...+...+...++.
T Consensus 114 a~vPL~~--~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S-------------Rf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 114 ANVPLED--ESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS-------------RFENVKQFIKALKK 175 (219)
T ss_dssp TS-S--T--T-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG-------------G-S-HHHHHHHHHC
T ss_pred ccCcCCC--CceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc-------------cCcCHHHHHHHHHH
Confidence 8877655 899999998888764 37889999999999999999999542 12256789999999
Q ss_pred cccccccccC
Q psy8372 273 ANLKCVKSEK 282 (883)
Q Consensus 273 aGf~vv~~~~ 282 (883)
.||++.....
T Consensus 176 ~GF~~~~~d~ 185 (219)
T PF05148_consen 176 LGFKLKSKDE 185 (219)
T ss_dssp TTEEEEEEE-
T ss_pred CCCeEEeccc
Confidence 9999987543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-07 Score=94.86 Aligned_cols=112 Identities=19% Similarity=0.310 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccC-----C------------------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-----K------------------------ 183 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~-----~------------------------ 183 (883)
.+..+|||||.+|.++..+++.. ...|.|+|+++..++.|+++.+.... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 45689999999999999888764 44899999999999999998654211 0
Q ss_pred ------CccEE----EccCCCCCCCcCCCCccEEEEccccccc----ChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 184 ------LDKCY----NVGIQDFKPEDLNIKYDVIWIQWVLMFI----LDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 184 ------~~~~~----~~d~~~~~~~~~~~~FDlVvs~~vL~hl----~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
++.|. ..+..++. ......||+|+|-.+-.++ .|+.+..++++++++|.|||+|++.-..+.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred cccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 00000 00001111 0113579999996654433 357799999999999999999999875544
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=94.67 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCChHH--HHH-HHh----CC--C-eEEEEeCCHHHHHHHHHHH--------------hh----c-----
Q psy8372 134 GKTRVLDVGAGIGRIS--KYL-LAK----HF--D-KIDLLEQSSKFIEQAKEEI--------------LK----D----- 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~--~~l-~~~----g~--~-~V~gvD~S~~~le~A~~~~--------------~~----~----- 180 (883)
+..||+..||++|.-. ..+ +.. .. . +++|+|+|+.+++.|++-. .. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999732 222 222 12 2 7999999999999998631 00 0
Q ss_pred -----cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 181 -----CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 181 -----~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.-..+.|.+.|+.+..+. .+.||+|+|.+||-++..+....+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~--~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP--FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcc--cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 013457888888882222 368999999999999998888999999999999999999976
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=94.75 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=81.7
Q ss_pred eEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEEEccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVvs~~vL~ 214 (883)
-+||||||.|.++..++...++ .++|+|++...+..|.+++......++.++++|+..+.. ...++++|.|+.+..=.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 7999999999999999988777 899999999999999999988888899999999887422 11136899999866444
Q ss_pred ccChHH------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 215 FILDED------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 215 hl~ded------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|..... -..++..++++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 332211 3479999999999999999987
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-07 Score=99.63 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChH--HHHH--HHhC----CC-eEEEEeCCHHHHHHHHHHHhh--------------------------
Q psy8372 135 KTRVLDVGAGIGRI--SKYL--LAKH----FD-KIDLLEQSSKFIEQAKEEILK-------------------------- 179 (883)
Q Consensus 135 ~~rVLDVGCGtG~~--~~~l--~~~g----~~-~V~gvD~S~~~le~A~~~~~~-------------------------- 179 (883)
.-||...||+||.- +..+ .... .. +|+|+|+|+.+++.|++-.-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999973 2222 2211 12 699999999999999874100
Q ss_pred -----ccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 180 -----DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 180 -----~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..-+.+.|.+.|+.+.+... .+.||+|+|.+++.|+.++....+++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01134578888887643221 368999999999999988889999999999999999988865
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-07 Score=108.72 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHH--Hhh-----ccCCCccEEEccCCCCCCCcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEE--ILK-----DCDKLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~--~~~-----~~~~~~~~~~~d~~~~~~~~~~~~F 204 (883)
+++.+|||+|||+|..+..+++... .+|+++|+++.+++.|+++ ... ...++++++..|..++.... +++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCC
Confidence 4567999999999999988887644 5899999999999999983 221 12346688888887653322 3689
Q ss_pred cEEEEcccccccChH---HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 205 DVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 205 DlVvs~~vL~hl~de---d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
|+|++...-...+.. --..+++.+++.|||||.+++...... .......++.+.++++||
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~-----------~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY-----------FAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc-----------cchHHHHHHHHHHHHcCC
Confidence 999997543332210 023689999999999999998752110 011123467888899999
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-07 Score=91.55 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
-.+.+|+|+|||||.++...+..|+..|+|+|+++++++.|++++.+ ....++|+.+|+.++. ..+|.|+++.-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dtvimNPP 117 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDTVIMNPP 117 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----CccceEEECCC
Confidence 35678999999999999988888988999999999999999999987 4556799999999875 47899998775
Q ss_pred ccccC-hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFIL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~-ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+--.. ..| ..++..+.+.-+ .++-.. ...+.+-+......+|+.+....
T Consensus 118 FG~~~rhaD-r~Fl~~Ale~s~---vVYsiH----------------~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 118 FGSQRRHAD-RPFLLKALEISD---VVYSIH----------------KAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CccccccCC-HHHHHHHHHhhh---eEEEee----------------ccccHHHHHHHHHhcCCeEEEEE
Confidence 53221 111 245555555541 111111 11145677888899998887663
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-07 Score=99.47 Aligned_cols=106 Identities=23% Similarity=0.276 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
-.+..|||||||+|.++...++.|+..|++||-|. +++.|++.+..+.. ..++++++.+.+...+. ++.|+|++-|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~--eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV--EKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc--cceeEEeehh
Confidence 36789999999999999988999988999999775 45999998887744 45788999888875542 6999999988
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+-+.+-- .-+...|-.--++|+|||.++=.
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 7666542 22566777777999999997643
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=96.03 Aligned_cols=156 Identities=14% Similarity=0.215 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
....++.+.+.... +....++|||||-|.+...+...+..+++-+|.|..|++.++..-. ..-.......|-+.+
T Consensus 57 eig~rlaDrvfD~k---k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--p~i~~~~~v~DEE~L 131 (325)
T KOG2940|consen 57 EIGDRLADRVFDCK---KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--PSIETSYFVGDEEFL 131 (325)
T ss_pred HHHHHHHHHHHHHh---hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--CceEEEEEecchhcc
Confidence 34444555554321 2234799999999999999999998899999999999999976422 111235566776666
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc--------cccCCcc-----ccccc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDS-----SVVRS 262 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~--------~~~~~~~-----~~~~s 262 (883)
++.+ +++|+|+++..+|++.+ +...+.+++..|||+|.++-+-........ .+..+.+ +-...
T Consensus 132 df~e--ns~DLiisSlslHW~Nd--LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~q 207 (325)
T KOG2940|consen 132 DFKE--NSVDLIISSLSLHWTND--LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ 207 (325)
T ss_pred cccc--cchhhhhhhhhhhhhcc--CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhh
Confidence 6544 89999999999999966 889999999999999998876543322110 0111111 11112
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
..+.-.++.+|||..+..
T Consensus 208 vrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 208 VRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhhHHhhcCccccee
Confidence 336677888888876543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=103.96 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++... .+|+|+|+++.|++.|++++...+..+++++.+|+.+..+. ..+++||+|++.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456799999999999999776654 57999999999999999998877667789999998764221 112479999986
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..=.-+ ...+++.+. .++|++.++++.... +...-...|.+.||++.....-+.||
T Consensus 370 PPr~G~----~~~~l~~l~-~l~~~~ivyvsc~p~----------------tlard~~~l~~~gy~~~~~~~~DmFP 425 (431)
T TIGR00479 370 PPRKGC----AAEVLRTII-ELKPERIVYVSCNPA----------------TLARDLEFLCKEGYGITWVQPVDMFP 425 (431)
T ss_pred cCCCCC----CHHHHHHHH-hcCCCEEEEEcCCHH----------------HHHHHHHHHHHCCeeEEEEEEeccCC
Confidence 542222 124555544 388998888875211 12222344567788888777777776
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.2e-07 Score=97.61 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=93.0
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEE
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCY 188 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~ 188 (883)
..+|++..+.++... ..+.+|||+=|-||.++.+++..|..+|+.||.|..+++.|++++.-++. ..++++
T Consensus 107 lFlDqR~nR~~v~~~-------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~ 179 (286)
T PF10672_consen 107 LFLDQRENRKWVRKY-------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFI 179 (286)
T ss_dssp S-GGGHHHHHHHHHH-------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEE
T ss_pred EcHHHHhhHHHHHHH-------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE
Confidence 346888999999888 45789999999999999988888887999999999999999999887743 467899
Q ss_pred EccCCCCCCC-cCCCCccEEEEccc-ccc--c-ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 189 NVGIQDFKPE-DLNIKYDVIWIQWV-LMF--I-LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 189 ~~d~~~~~~~-~~~~~FDlVvs~~v-L~h--l-~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+.|+.++... ...++||+|++..- +.. . -..++..++..+.++|+|||.|++..+
T Consensus 180 ~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 180 QGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp ES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9998764321 11368999998432 110 0 014578899999999999999987775
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=94.42 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC----cCCCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE----DLNIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~----~~~~~FD 205 (883)
.+..+|||||||+|..+.+++.... ..|+.+|.++.+++.|++++...+.. .++++.+|+.+..+. ...++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3567999999999999998876432 26999999999999999999887543 678888888664321 1125899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
+|+.-.. ..++..++..+.++|+|||.+++....+++.
T Consensus 197 ~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 197 FAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence 9988653 3457889999999999999999877665543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=90.46 Aligned_cols=123 Identities=19% Similarity=0.282 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhccCCC-ccEEE-cc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKL-DKCYN-VG 191 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~-~d 191 (883)
...-.+|..+... .+..+|||||.+.|+.+.+++.... + +++.+|.++++.+.|++++...+... +..+. +|
T Consensus 45 ~e~g~~L~~L~~~----~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARL----SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHh----cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 4555666666543 4677999999999999998887655 3 89999999999999999999875433 55666 46
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
..+.......++||+|+.-.. ..+...++..+.++|+|||.+++.....++
T Consensus 121 al~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred HHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 655433222479999988542 244678999999999999999998766554
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-07 Score=101.74 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~ 190 (883)
+|++..+..+.... .|.+|||+=|-||.++.+++..|+.+|++||.|..+++.|++++.-++. ..+.++++
T Consensus 203 lDqR~~R~~l~~~~-------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~ 275 (393)
T COG1092 203 LDQRDNRRALGELA-------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVG 275 (393)
T ss_pred HHhHHHHHHHhhhc-------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehh
Confidence 57888888888884 4889999999999999988888887899999999999999999987753 44689999
Q ss_pred cCCCCCCCc--CCCCccEEEEccc-ccc-----c-ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPED--LNIKYDVIWIQWV-LMF-----I-LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~~--~~~~FDlVvs~~v-L~h-----l-~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++.... .+.+||+|++..- +-- . -..++..++..+.++|+|||.+++.++.
T Consensus 276 Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 276 DVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred hHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 988765321 1248999997441 110 0 0145888999999999999999999854
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=92.83 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=100.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCC-CcCCCCccEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKP-EDLNIKYDVI 207 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~~FDlV 207 (883)
..+|++|||.|.|+|.++..++.. +.. +|+..|..+..++.|++++...+. .++++...|+..-.+ ...+..+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 368999999999999999988764 333 899999999999999999998755 467889999854222 2223689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHh-ccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~L-KPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
+.- +|+ +-.++..+.++| ||||++++-.++-. ........+++.||..+.
T Consensus 118 fLD-----lp~--Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------------Qv~~~~~~L~~~gf~~i~------- 168 (247)
T PF08704_consen 118 FLD-----LPD--PWEAIPHAKRALKKPGGRICCFSPCIE---------------QVQKTVEALREHGFTDIE------- 168 (247)
T ss_dssp EEE-----SSS--GGGGHHHHHHHE-EEEEEEEEEESSHH---------------HHHHHHHHHHHTTEEEEE-------
T ss_pred EEe-----CCC--HHHHHHHHHHHHhcCCceEEEECCCHH---------------HHHHHHHHHHHCCCeeeE-------
Confidence 874 444 678999999999 99999999886533 233556677778887652
Q ss_pred cccccccccccceEEEEeeeeeeccc
Q psy8372 287 PMDLWEDWGLLSKEVIASNITVLNKA 312 (883)
Q Consensus 287 P~el~~~~~~~~iEI~~e~i~vl~k~ 312 (883)
-+|+....+++-...
T Consensus 169 -----------~~Evl~R~~~v~~~~ 183 (247)
T PF08704_consen 169 -----------TVEVLLREWEVRPRR 183 (247)
T ss_dssp -----------EEEEEEEEEEEETCG
T ss_pred -----------EEEEEeeEEEEEecc
Confidence 356666666654433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-07 Score=86.92 Aligned_cols=47 Identities=32% Similarity=0.507 Sum_probs=43.7
Q ss_pred ccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 11 HTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 11 ~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
|+|+++..++.|++|+++|||++.|+ ..|+.|||++|.+|+++.++.
T Consensus 1 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~ 50 (108)
T cd04316 1 HYSAEITPELDGEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKK 50 (108)
T ss_pred CChhhCchhhCCCEEEEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCCC
Confidence 79999999999999999999999999 789999999999999997543
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=86.66 Aligned_cols=108 Identities=20% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCC-C-CcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFK-P-EDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~-~-~~~~~~FDl 206 (883)
.++.+|||+|||+|..+..++.. +..+|+..|..+ .++.++.++..+. ...+.+...+..+.. . .....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999877777 466899999998 9999999887653 344455555554411 0 011258999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+++.+++.- +....++..+.++|+|+|.+++...
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999875 4588999999999999999777764
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=90.09 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=88.9
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~ 195 (883)
..++..+... .+..+||||||++|+.+.+++...+. +|+.+|+++...+.|++.+...+. ..++++.+|+.+.
T Consensus 34 g~lL~~l~~~----~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 34 GQLLQMLVRL----TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHH----HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHHh----cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 3455555432 24669999999999999988875432 899999999999999999887643 4678899988764
Q ss_pred CCC----cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 196 KPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 196 ~~~----~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.+. ...++||+|+.-.. ..++..++..+.++|+|||.+++....+.+
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred HHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 321 11258999998653 234778899999999999999998766554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=87.97 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
.+.+|||++||+|.++..++.+|..+|+++|.++.+++.+++++...... .+++++.|+.++... .....||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 47799999999999999999999888999999999999999998776443 567888888554211 101247888886
Q ss_pred ccccccChHHHHHHHHHHH--HHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCK--QILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~ 243 (883)
.-...- .....+..+. .+|+++|.+++...
T Consensus 129 PPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFNG---ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 654321 1233444333 46888888887764
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.3e-07 Score=94.57 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----------------c-------------CCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----------------C-------------DKL 184 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----------------~-------------~~~ 184 (883)
++.++||||||+-..-...+...+.+++..|.++..++..++-+... + ..+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 46799999999965543234455668999999999988666543321 0 011
Q ss_pred ccEEEccCCCCCCCcC----CCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCC-cc
Q psy8372 185 DKCYNVGIQDFKPEDL----NIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE-DS 257 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~----~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~-~~ 257 (883)
-.++..|+...++..+ +.+||+|++..+|+.+.. +....+++++.++|||||.|++........ +..... -.
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-Y~vG~~~F~ 214 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-YMVGGHKFP 214 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-EEETTEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-EEECCEecc
Confidence 1466788877655432 245999999999988753 668999999999999999999987644322 222211 12
Q ss_pred cccccchhhhhhhhhcccccccccC
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
....+.+..++.++++||.+...+.
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cccCCHHHHHHHHHHcCCEEEeccc
Confidence 3345677899999999999987773
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=91.92 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+..|||||||+|.++...+..|..+|++|+.| +|.+.|++....+ ...++.++.+.++++..++ +.|+|++-.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE---k~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE---KVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch---hccEEEeccc
Confidence 467899999999999998888899999999965 7999999988765 3445677888888877654 8999999766
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+-++......-.++++|||.|.++-+.
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 555555555555556779999999987543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=90.78 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=87.5
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs~~vL 213 (883)
..+||||||.|.+...+|...+. .++|||+....+..|.+++.+...+++..++.|+..+...-. +++.|-|+.+..=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 47999999999999999998887 899999999999999999998877688999999887644322 3499999987654
Q ss_pred cccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.|-... -...+++.+++.|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 433211 13579999999999999999987
|
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-06 Score=89.84 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC-CC----ccceeccCCCCceeeEe--cCHHHHHHHHHcc---
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG-GA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMVG--- 414 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~-ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~--- 414 (883)
.++|..|.+.+++.| .++||.||.||+|.... .. |. ..|.+... .|+.+.|+ ..|++..-.+...
T Consensus 2 ~~~~~~l~~~l~~~f-~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~ 79 (261)
T cd00773 2 AALRRYIEDTLREVF-ERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSL 79 (261)
T ss_pred hHHHHHHHHHHHHHH-HHcCCEEeeccceeeHHHhcccccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccC
Confidence 367899999999999 68999999999997742 11 11 13554322 36778887 4455544332111
Q ss_pred CC-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 415 SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 415 ~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
.. -|+|++++|||.|.....|..||+|+++|+.+.+
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCC
Confidence 13 3999999999999988888899999999998775
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=88.68 Aligned_cols=127 Identities=15% Similarity=0.254 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......++..+-. .+....|.|+|||.+.++. .....|+..|+-+. +-+++.+|+.+
T Consensus 165 ~nPld~ii~~ik~----r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~---------------~~~V~~cDm~~ 221 (325)
T KOG3045|consen 165 ENPLDVIIRKIKR----RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV---------------NERVIACDMRN 221 (325)
T ss_pred CChHHHHHHHHHh----CcCceEEEecccchhhhhh----ccccceeeeeeecC---------------CCceeeccccC
Confidence 3445556666532 2566789999999998875 22336999997421 22568889998
Q ss_pred CCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.+..+ ++.|++++..+|+-- ++..++.+++|+|||||.++|.+... ...+...+...+...|
T Consensus 222 vPl~d--~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~S-------------Rf~dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 222 VPLED--ESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIAEVKS-------------RFSDVKGFVRALTKLG 283 (325)
T ss_pred CcCcc--CcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEEehhh-------------hcccHHHHHHHHHHcC
Confidence 77665 899999987776543 47889999999999999999998532 2224557899999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
|.+.....
T Consensus 284 F~~~~~d~ 291 (325)
T KOG3045|consen 284 FDVKHKDV 291 (325)
T ss_pred Ceeeehhh
Confidence 99876543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.4e-06 Score=93.44 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
+......+++.+..... ..+.+|||++||+|.++..+ +.++.+|+|+|.|+.+++.|++++..++..+++++.+|+.
T Consensus 188 N~~~~e~l~~~v~~~~~--~~~~~vLDl~~G~G~~sl~l-a~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 188 NAAVNEKMLEWALDATK--GSKGDLLELYCGNGNFTLAL-ARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCeEEEEeccccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 34445555555533221 12357999999999999855 4556689999999999999999988776667789999987
Q ss_pred CCCCCc--------------CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccc
Q psy8372 194 DFKPED--------------LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 259 (883)
Q Consensus 194 ~~~~~~--------------~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~ 259 (883)
++.... ...+||+|+...-=.-+ ...+++.+. +|++.++++.... ..
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~---~~~~ivyvSC~p~------------tl 325 (362)
T PRK05031 265 EFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL----DDETLKLVQ---AYERILYISCNPE------------TL 325 (362)
T ss_pred HHHHHHhhcccccccccccccCCCCCEEEECCCCCCC----cHHHHHHHH---ccCCEEEEEeCHH------------HH
Confidence 642110 01258999987642222 124444443 3788888887321 11
Q ss_pred cccchhhhhhhhhcccccccccCCCCCc
Q psy8372 260 VRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..++..+. + ||++.....-..||
T Consensus 326 ---arDl~~L~-~-gY~l~~v~~~DmFP 348 (362)
T PRK05031 326 ---CENLETLS-Q-THKVERFALFDQFP 348 (362)
T ss_pred ---HHHHHHHc-C-CcEEEEEEEcccCC
Confidence 22444444 3 89998888888887
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-06 Score=96.88 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCChHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g-----~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+..|||||||+|.++...+..+ ..+|++|+-++.++...++++..+ -.+.++++.+|+.++..+. +.|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe---kvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE---KVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS----EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC---ceeEEE
Confidence 5689999999999987666654 348999999999888877764444 3466899999999987655 899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
|-.+=....+|-....|..+.|.|||||.++=
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 96654444345466788999999999988653
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-06 Score=88.12 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh---ccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK---DCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..+.+|||+|||+|.++..++..|..+|+|+|+++.|+....+.... ....+++ ..+..++.+.- ..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d~--~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPDF--ATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCCc--eeeeEEEe
Confidence 35779999999999999999888877899999999888762222111 0111111 11222222111 35776666
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.. ..+..+.++|+| |.+++-.
T Consensus 150 S~~----------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 150 SLI----------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ehH----------hHHHHHHHHhCc-CeEEEEc
Confidence 543 256779999999 7666543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=91.10 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=49.5
Q ss_pred cccCcCCCCCCChhhhccCCCCccceeeEEEecCe--EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC
Q psy8372 752 AHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN--EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH 829 (883)
Q Consensus 752 ~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~--Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh 829 (883)
+.+|||.|. .-.|+.++|. ||+|.++ -+| ++++..|++++.+. |
T Consensus 270 s~fPftePs----------------~evdi~~~g~WiEi~gcG~--v~p----~vl~~~g~~~~~~~--------g---- 315 (460)
T TIGR00469 270 AYFPFTAPS----------------WEIEIWFKDEWLELCGCGI--IRH----DILLRAGVHPSETI--------G---- 315 (460)
T ss_pred ccCCCCCcc----------------eEEEEEECCeeEEEeeecc--CcH----HHHHHcCCCccceE--------E----
Confidence 368999873 4578888986 9999886 233 35566688765321 1
Q ss_pred cceeccHHHHHHHHhCCCCcccc
Q psy8372 830 GGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 830 gG~glGldRlvm~l~~~~sIRdv 852 (883)
--||||||||+|++.|+++||..
T Consensus 316 ~AfGiGleRlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 316 WAFGLGLDRIAMLLFDIPDIRLF 338 (460)
T ss_pred EEEEecHHHHHHHHcCccHHHHH
Confidence 15899999999999999999864
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=82.71 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
...-..+.+++++.........+.+++|||+|.|.-+..++-..+. +++.+|.+..-+...+......+..++++++..
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R 106 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR 106 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-
T ss_pred HHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee
Confidence 3455567788888655444334448999999999999888777666 899999999998888888887778888999999
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++.. ...+||+|++..+-. +..++.-+...|++||.+++.-
T Consensus 107 ~E~~~---~~~~fd~v~aRAv~~------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 107 AEEPE---YRESFDVVTARAVAP------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHTT---TTT-EEEEEEESSSS------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ecccc---cCCCccEEEeehhcC------HHHHHHHHHHhcCCCCEEEEEc
Confidence 88821 236899999988732 5678899999999999988875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-06 Score=87.99 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+.+.+|||.+.|-|+++...+++|..+|.-++.++..++.|.-+=-.. ....++.+.+|+.+.-....+++||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 568999999999999999999999878999999999999997653322 122457788888776555445789999853
Q ss_pred cc-ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WV-LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~v-L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.- +.+...=--..+-.+++|+|||||.++-..-..... +. -..-+......|+++||+++....
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---yr-----G~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---YR-----GLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---cc-----cCChhHHHHHHHHhcCceeeeeeh
Confidence 21 112111113478999999999999999877433211 11 011244778899999999775443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=86.82 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccE
Q psy8372 108 SSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187 (883)
Q Consensus 108 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~ 187 (883)
++..-.+......+++.+. ..++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++.. ..++++
T Consensus 8 GQnfl~d~~~~~~iv~~~~-----~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~i 79 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE-----DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEI 79 (258)
T ss_pred CccccCCHHHHHHHHHhcC-----CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEE
Confidence 3333345555666666542 2457899999999999999888874 4699999999999999988754 346788
Q ss_pred EEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 188 YNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 188 ~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+++|+.++... .||.|+++...+
T Consensus 80 i~~D~~~~~~~----~~d~Vv~NlPy~ 102 (258)
T PRK14896 80 IEGDALKVDLP----EFNKVVSNLPYQ 102 (258)
T ss_pred EEeccccCCch----hceEEEEcCCcc
Confidence 99999876532 489999987643
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-06 Score=90.44 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||||||+|.++..++..+. +|+|+|+++.|++.++++... .+++++.+|+
T Consensus 26 ~~~~i~~~i~~~l~-----~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~ 96 (272)
T PRK00274 26 IDENILDKIVDAAG-----PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDA 96 (272)
T ss_pred CCHHHHHHHHHhcC-----CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChh
Confidence 34444555555442 24667999999999999998888865 699999999999999987642 4568899999
Q ss_pred CCCCCCcCCCCccEEEEccc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++... -.+|.|+++..
T Consensus 97 ~~~~~~~--~~~~~vv~NlP 114 (272)
T PRK00274 97 LKVDLSE--LQPLKVVANLP 114 (272)
T ss_pred hcCCHHH--cCcceEEEeCC
Confidence 8875433 11588888754
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.3e-06 Score=90.78 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc-cC-CCccEEE-ccCCCCCCC--cCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-CD-KLDKCYN-VGIQDFKPE--DLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~-~~-~~~~~~~-~d~~~~~~~--~~~~~FDlV 207 (883)
.+.+|||||||+|.....++.+.+. +++|+|+++.+++.|++++..+ .. ..+.+.. .+..++... ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999887766655433 7999999999999999999876 23 3344433 333332211 113589999
Q ss_pred EEccccccc
Q psy8372 208 WIQWVLMFI 216 (883)
Q Consensus 208 vs~~vL~hl 216 (883)
+|+.-++--
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999887644
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.4e-06 Score=86.89 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQ 193 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~ 193 (883)
....++..+... .+..+|||||+++|.-+.+++..... +|+.+|.++...+.|++.+...+ ...++++.+++.
T Consensus 66 ~~g~lL~~l~~~----~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 66 DEGQFLNMLLKL----INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 344555555432 34569999999999999877765322 79999999999999999998775 456788888877
Q ss_pred CCCCCc-----CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 194 DFKPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 194 ~~~~~~-----~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
+..+.. ..++||+|+.-.- .+.+...+..+.+.|+|||.+++....+++.
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~ 196 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLWNGS 196 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCc
Confidence 653321 1258999998643 2446788899999999999988876655543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=89.65 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=86.5
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-----C---------C
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-----L---------N 201 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-----~---------~ 201 (883)
.+|||+|||+|.++..++ .++.+|+|+|+++.|++.|++++..++..+++++.+|+.++.... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999998554 445689999999999999999998776666789999987643210 0 0
Q ss_pred CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 202 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
..||+|+...-=.-+ ...+++.+. +|++.++++.... .. ..++..+. .||++....
T Consensus 278 ~~~d~v~lDPPR~G~----~~~~l~~l~---~~~~ivYvsC~p~------------tl---aRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL----DPDTCKLVQ---AYERILYISCNPE------------TL---KANLEQLS--ETHRVERFA 333 (353)
T ss_pred CCCCEEEECCCCCCC----cHHHHHHHH---cCCcEEEEEcCHH------------HH---HHHHHHHh--cCcEEEEEE
Confidence 138999986642111 123444443 4788888887321 11 22444443 248888888
Q ss_pred CCCCCc
Q psy8372 282 KGEFSP 287 (883)
Q Consensus 282 ~~~~~P 287 (883)
.-..||
T Consensus 334 ~~DmFP 339 (353)
T TIGR02143 334 LFDQFP 339 (353)
T ss_pred EcccCC
Confidence 777776
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=86.20 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChH----HHHHHHhC-----CC-eEEEEeCCHHHHHHHHHHHhh-------------------cc---
Q psy8372 134 GKTRVLDVGAGIGRI----SKYLLAKH-----FD-KIDLLEQSSKFIEQAKEEILK-------------------DC--- 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~----~~~l~~~g-----~~-~V~gvD~S~~~le~A~~~~~~-------------------~~--- 181 (883)
..-||.-+||+||.- +..+...+ .. +|+|+|+|..+++.|+.-.=. ..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 367999999999963 32222322 22 799999999999999752100 00
Q ss_pred -------CCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 182 -------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 182 -------~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+.|-+.|+.+-.+ ..+.||+|+|.+||-++..+....++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1234566666665443 2368999999999999988888999999999999999999976
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=82.39 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEE----ccCCCCCCCcCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYN----VGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~----~d~~~~~~~~~~~~FDlV 207 (883)
.+..+||+|||+|..+..++..-++ .|+++|.|+.++..|.+++.... .+.+..+. .|..+..+ ...+++|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-cccCceeEE
Confidence 3457999999999999988776555 89999999999999999988763 33344443 33332222 224789999
Q ss_pred EEcccccccCh--------------------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILD--------------------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~d--------------------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+.- ++.. +.+..++.-+.|.|+|||.+.+...
T Consensus 227 vsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99863 2211 1356677888999999999999874
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=88.31 Aligned_cols=109 Identities=17% Similarity=-0.014 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+|..|||-=||||.++..+.-.|.. ++|.|++..|++-|+.|+...+.....++.. |+..++... .++|.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~--~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD--NSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC--CccceEEec
Confidence 367889999999999999877666765 9999999999999999998775444445555 888887544 479999985
Q ss_pred cccc------ccC-hHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLM------FIL-DEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~------hl~-ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.-.- -.. ++-+..+|+.++++||+||++++..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4221 111 23478999999999999999999884
|
|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=84.21 Aligned_cols=113 Identities=26% Similarity=0.352 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhc-CCCeEEEcCCeeccCC-C--CCC------ccceeccCCCCceeeEecCHH--H---HHHHHHc-
Q psy8372 350 FRSKFLMRTREFLAT-HRDFVEVETPTLFKRT-P--GGA------REFVVPTHEPNKFYSLVQSPQ--Q---LKQLLMV- 413 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~-~~gF~EV~TP~l~~~~-~--~ga------~~f~v~~~~~~~~~~L~~Spq--l---~kq~l~~- 413 (883)
++++|.+.+++.+ . +.||.||.||+|.+.. . .|. ..|.+... .+..++|+.+.. + ++.....
T Consensus 1 l~~~l~~~~~~~~-~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~-~~~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 1 LRNALERFIREEF-VLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDR-GDEEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp HHHHHHHHHHHHH-HHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEET-TTEEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred CHHHHHHHHHHHh-HHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeec-ccccEEeccccccceeeeecceeeec
Confidence 5789999999999 6 7999999999998752 1 121 12444322 235688974443 2 3332211
Q ss_pred -cCCC-cEEEEeeceecCC-C--CCCCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 414 -GSVD-RYFQIARCYRDES-T--RPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~-~--~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
..+. |+|+||+|||+|. . .-.|..||+|.|++....+ ++..+..++++..+
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~ 134 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELY 134 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHH
Confidence 1233 9999999999994 2 3466699999999998888 78777777777654
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.7e-06 Score=88.30 Aligned_cols=127 Identities=18% Similarity=0.143 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-----c-cceeccCCCCceeeEecCHH-----HHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-----R-EFVVPTHEPNKFYSLVQSPQ-----QLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-----~-~f~v~~~~~~~~~~L~~Spq-----l~kq~l 411 (883)
.-.+++.+|.+.+++.| .+.||.||.||+|.... ..|. . -|.+... .+..++|+...+ ++...+
T Consensus 29 ~g~~l~~~i~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~-~~~~l~LrPt~e~~~t~~~~~~i 106 (255)
T cd00779 29 LGLRVLKKIENIIREEM-NKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR-HGKEFLLGPTHEEVITDLVANEI 106 (255)
T ss_pred hHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecC-CCCeEEEecCCcHHHHHHHHhcc
Confidence 34568899999999999 67899999999997631 1122 1 2554322 245678864322 333332
Q ss_pred Hc-cCCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHHH---HHhccCCCCce
Q psy8372 412 MV-GSVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELLC---YCLNIPTRTFS 474 (883)
Q Consensus 412 ~~-~~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~~~~~~~f~ 474 (883)
.. ..+. |+|++++|||+| ..... |..||+|.|++..+.+..+..+..++++. .+++.+.-||.
T Consensus 107 ~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~ 177 (255)
T cd00779 107 KSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFV 177 (255)
T ss_pred ccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 11 1234 999999999999 55555 88999999999988877666665555543 34444433443
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-06 Score=85.23 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQ 193 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~ 193 (883)
......++..+... .-.+.+|||+-||+|.++..++++|+.+|+.||.++.++...++++...... ....+..|+.
T Consensus 26 drvrealFniL~~~---~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 26 DRVREALFNILQPR---NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp HHHHHHHHHHHHCH----HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred HHHHHHHHHHhccc---ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 34445555555321 0258899999999999999999999999999999999999999998876443 3567777754
Q ss_pred CCCCC--cCCCCccEEEEcccccccChHHHHHHHHHHH--HHhccCcEEEEEeccc
Q psy8372 194 DFKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVA 245 (883)
Q Consensus 194 ~~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~~~ 245 (883)
..... ....+||+|++..-...-. ....++..+. .+|+++|.+++.....
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHhhcccCCCceEEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 43211 1236899999987544331 1356777776 7899999999987543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-06 Score=97.53 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE--EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI--DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V--~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
...+.|+.++........-..+||||||+|.++.+++.++.-.+ ..-|..+.+++.|.++..-.. +-......
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~-----~~~~~s~r 174 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAM-----IGVLGSQR 174 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchh-----hhhhcccc
Confidence 33444555543221212224689999999999999999876522 223666778888877643221 01112234
Q ss_pred CCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++.+. ++||+|.|+.++-.....+ ..+|-++-|+|+|||+++.+.+..
T Consensus 175 LPfp~--~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 175 LPFPS--NAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccCCc--cchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcc
Confidence 44444 7999999988887665432 468999999999999999987543
|
; GO: 0008168 methyltransferase activity |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=88.18 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEcc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVG 191 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d 191 (883)
.+......+++... ..++.+|||||||+|.++..++..+. +|+++|+++.|++.+++++.... ..+++++.+|
T Consensus 20 ~d~~i~~~Iv~~~~-----~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 20 KNPLVLDKIVEKAA-----IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred CCHHHHHHHHHhcC-----CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 34555555555442 24677999999999999998887754 59999999999999999887543 4567899999
Q ss_pred CCCCCCCcCCCCccEEEEcccc
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+..... ..||+|+++...
T Consensus 94 al~~~~----~~~d~VvaNlPY 111 (294)
T PTZ00338 94 ALKTEF----PYFDVCVANVPY 111 (294)
T ss_pred Hhhhcc----cccCEEEecCCc
Confidence 987543 368999886544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=76.03 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCCh-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~-~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|. ++..+.+.|. +|+++|+++..++.|+++.. .++..|+.+..+.- -+.+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~-------~~v~dDlf~p~~~~-y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGL-------NAFVDDLFNPNLEI-YKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCC-------eEEECcCCCCCHHH-HhcCCEEEEeCC
Confidence 45799999999996 8877776666 59999999999999977642 57888888765432 257999998653
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
..++...+.++++.+ |.-++|.....+
T Consensus 87 -----p~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 87 -----PRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred -----CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 344556666666544 456777765443
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-06 Score=84.23 Aligned_cols=47 Identities=53% Similarity=0.916 Sum_probs=43.9
Q ss_pred ccccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecC
Q psy8372 9 RSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 9 r~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
+||+|+++..++.|++|+++|||++.|+ .+|++|||.+|.+|+++..
T Consensus 1 ~~~~~~~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~~Q~v~~~ 50 (135)
T cd04317 1 RTHYCGELRESHVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDP 50 (135)
T ss_pred CceehhhCChhHCCCEEEEEEeEehhcccCCEEEEEEecCCeeEEEEEeC
Confidence 5899999999999999999999999999 6999999999999999854
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=90.09 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+.+|||++||+|..+..++.. +..+|+++|+++.+++.+++++..++.....+...|+..+... .+.||+|++..-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--ERKFDVVDIDPF- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cCCCCEEEECCC-
Confidence 468999999999999988765 4348999999999999999998876655556888888665332 247999999752
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-. ...++..+.+.+++||.++++.
T Consensus 135 -Gs----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -GS----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence 22 3468888788899999999984
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=92.37 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC--C--CCCc-cc--eecc-C--CCCceeeEe---cCHHH--HHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT--P--GGAR-EF--VVPT-H--EPNKFYSLV---QSPQQ--LKQ 409 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--~--~ga~-~f--~v~~-~--~~~~~~~L~---~Spql--~kq 409 (883)
-.-...+..|...+|+-+ ++.||.||.||++.... . .|.. .. +-.| + ..+..+.|+ ++|=. +.+
T Consensus 15 p~d~~~~~~i~~~~~~v~-~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~e 93 (429)
T COG0124 15 PEDMALREYIESTIRKVF-ESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAE 93 (429)
T ss_pred hHHHHHHHHHHHHHHHHH-HHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHh
Confidence 445678999999999999 78999999999997642 1 1222 10 1111 1 246778887 77731 221
Q ss_pred H-HHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 410 L-LMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 410 ~-l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
- +...---|.|+++||||.|.++..|..||+|+++|..+.+ -.|++.++-+++..+
T Consensus 94 n~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 94 NKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred ccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 1 1112123999999999999999999999999999999876 578888777777654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=87.43 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
...+||.+|+|.|..+..+++.. ..+|+.||+++.+++.|++.+... ...+++++..|...+.... .++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 45699999999999998888753 458999999999999999987543 2456788888887764322 46899999
Q ss_pred Ecccc-------cccChHHHHHHHH-HHHHHhccCcEEEEEe
Q psy8372 209 IQWVL-------MFILDEDIIKFLN-LCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL-------~hl~ded~~~~l~-~~~r~LKPGG~lvi~~ 242 (883)
+...= .++- -..+++ .+++.|+|||.+++..
T Consensus 182 ~D~~dp~~~~~~~~Ly---t~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLY---TKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhc---cHHHHHHHHHHhcCCCcEEEEec
Confidence 86311 1111 236787 8999999999987754
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=83.60 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||+|||+|.++..++..+. .|+++|+++.+++.++++... ..+++++.+|+
T Consensus 13 ~d~~i~~~i~~~~~-----~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~ 84 (253)
T TIGR00755 13 IDESVIQKIVEAAN-----VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDA 84 (253)
T ss_pred CCHHHHHHHHHhcC-----CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECch
Confidence 34555555655552 24577999999999999998888775 499999999999999987643 34567889998
Q ss_pred CCCCCCcCCCCcc---EEEEccccccc
Q psy8372 193 QDFKPEDLNIKYD---VIWIQWVLMFI 216 (883)
Q Consensus 193 ~~~~~~~~~~~FD---lVvs~~vL~hl 216 (883)
.+++.. .|| +|+++.. .|+
T Consensus 85 ~~~~~~----~~d~~~~vvsNlP-y~i 106 (253)
T TIGR00755 85 LKVDLP----DFPKQLKVVSNLP-YNI 106 (253)
T ss_pred hcCChh----HcCCcceEEEcCC-hhh
Confidence 876543 355 7776654 344
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=81.33 Aligned_cols=109 Identities=25% Similarity=0.294 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc-------------cceeccCCCCceeeEe--cCHHHHHHHHHccCC
Q psy8372 353 KFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR-------------EFVVPTHEPNKFYSLV--QSPQQLKQLLMVGSV 416 (883)
Q Consensus 353 ~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~-------------~f~v~~~~~~~~~~L~--~Spql~kq~l~~~~~ 416 (883)
++.+.+|++| ...||.||.|+.++... .-..- .+.+. ++- .-+|+ ..|.+.+.+..-..-
T Consensus 5 ~~~~~ir~~L-~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~--NP~-~~~LR~sLlp~LL~~l~~N~~~ 80 (218)
T cd00496 5 KVIEEIEDIF-VSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN--DPA-RLLLRTHTSAVQARALAKLKPP 80 (218)
T ss_pred HHHHHHHHHH-HHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC--CCc-eEEEeccCcHHHHHHHHhcCCC
Confidence 5677889999 58999999999997652 11110 01111 111 23566 445555443211134
Q ss_pred CcEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
-|+||||+|||.+..+..|.|||+|+++.+++. |+.|++..+|+++..+
T Consensus 81 ~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 81 IRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred eeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 599999999999876656678999999999998 8999999999999765
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=84.89 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-------ccceeccCCC---CceeeEecCHH-----HHH
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-------REFVVPTHEP---NKFYSLVQSPQ-----QLK 408 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-------~~f~v~~~~~---~~~~~L~~Spq-----l~k 408 (883)
-.+++.+|.+.+++.+ .+.||.||.||.|.... ..|. ..|.+..... +..++|+...+ ++.
T Consensus 31 g~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~ 109 (264)
T cd00772 31 AKAILDKIENVLDKMF-KEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAA 109 (264)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHH
Confidence 3468899999999999 67899999999997742 1121 1244432221 15678863322 233
Q ss_pred HHHHc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHHH---HHHhccCC-CCceee
Q psy8372 409 QLLMV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCLNIPT-RTFSRI 476 (883)
Q Consensus 409 q~l~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~~~~~-~~f~ri 476 (883)
..+.. ..+. |+|++++|||+|... .. |..||+|.|.+..+.+.++..+.++.++ ..++..+. .||..+
T Consensus 110 ~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~ 186 (264)
T cd00772 110 KFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEG 186 (264)
T ss_pred hhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 32211 2334 999999999999544 33 6789999999987788888888888777 44554444 444433
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=89.32 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC-------ccceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA-------REFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+..-.+++..+...+++.| .++||.||.||+|.... . .|. ..|.+.- ..|+.+.|+ ..+++....
T Consensus 10 ~p~~~~~~~~i~~~i~~~f-~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpD~T~~iaR~~ 87 (397)
T TIGR00442 10 LPEEMIKWQYIEETIREVF-ELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKD-KGGRSLTLRPEGTAPVARAV 87 (397)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeEecCcccchHHHhhhccCccccccccceEEEEC-CCCCEEeecCCCcHHHHHHH
Confidence 3455678999999999999 68999999999996542 1 111 1244322 236777887 445555543
Q ss_pred HHcc---CC-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 411 LMVG---SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 411 l~~~---~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
+... .+ -|+|++++|||.|..+..|..||+|+++|+.+.+
T Consensus 88 ~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 88 IENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred HhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCC
Confidence 2211 12 3999999999999998888999999999998876
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4e-05 Score=75.54 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlV 207 (883)
..+.-|||+|.|||.++..++++|.. .+++++.|++.+....+..... +++.+|+.++.. ...+..||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~-----~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV-----NIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc-----cccccchhhHHHHHhhcCCCeeeeE
Confidence 45678999999999999999999876 8999999999999998877643 467777766541 1223579999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|.--+-.++-....++++.+...|.+||.++--...
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9988888887766789999999999999998877643
|
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-05 Score=83.29 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC-Cc-----cceeccCC---CCceeeEe--cCHHHH---HHH
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG-AR-----EFVVPTHE---PNKFYSLV--QSPQQL---KQL 410 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g-a~-----~f~v~~~~---~~~~~~L~--~Spql~---kq~ 410 (883)
.+++..|.+.+++.| .+.||.||.||+|.... .+| .. .|.+.... .+..++|+ ..+.++ .+.
T Consensus 2 ~~~~~~l~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 2 TALWRALERFLDDRM-AEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred HHHHHHHHHHHHHHH-HHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 357889999999999 68999999999997652 233 11 23333211 04667886 233333 221
Q ss_pred HHc-cCCC-cEEEEeeceecCCCC---CCCCcceecccccccCCC
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTR---PDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~---~~r~~EFt~le~e~~~~~ 450 (883)
... ..+. |+|++++|||+|... -.|..||+|.|+|....+
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 111 1232 899999999999886 457789999999997765
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-05 Score=89.41 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-------CccceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-------AREFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-------a~~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+..-.+.+..+...+|+.| .++||.||.||++.... .+| ..-|.+.. ..|+.+.|+ ..|++....
T Consensus 14 ~p~~~~~~~~i~~~i~~~~-~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpd~T~~~ar~~ 91 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVF-ERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQD-KGGRSLTLRPEGTAPVVRAV 91 (412)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeEeeccccchHHHhccccCcccccccceeEEEEc-CCCCEEEecCCCcHHHHHHH
Confidence 3555678899999999999 68999999999995531 111 11244432 236778887 456565554
Q ss_pred HHcc-CCCcEEEEeeceecCCCCCCCCcceecccccccCCCH----HHHHHHHHHH
Q psy8372 411 LMVG-SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR----DDVMRLIEEL 461 (883)
Q Consensus 411 l~~~-~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~----~dvm~~~E~l 461 (883)
+... .--|+|++++|||+|..+..|..||+|+++|+...+- .|++.++.++
T Consensus 92 ~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~ 147 (412)
T PRK00037 92 IEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADI 147 (412)
T ss_pred HhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHH
Confidence 3212 2249999999999999888888999999999977652 4444444433
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=79.58 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~~vL 213 (883)
..++|||||=+...... ....+ .|+.||+.+.- -...+.|+.+.+.+ ...++||+|+++.||
T Consensus 52 ~lrlLEVGals~~N~~s-~~~~f-dvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS-TSGWF-DVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccc-ccCce-eeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 47999999986665432 12233 49999987521 13577788776532 224799999999999
Q ss_pred cccCh-HHHHHHHHHHHHHhccCcE-----EEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 214 MFILD-EDIIKFLNLCKQILNKNGI-----IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 214 ~hl~d-ed~~~~l~~~~r~LKPGG~-----lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
.++|+ .+...+++++++.|+|+|. |++..+... ...+.+.+.+.|..+++..||..++.+...
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--------v~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--------VTNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH--------hhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 99996 5677999999999999999 888876432 234556678899999999999999876554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.8e-05 Score=80.02 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh----c----------------------------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK----D---------------------------- 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~----~---------------------------- 180 (883)
....+||--|||.|+++-.++..|+. +.|.|.|--|+-...=.+.. .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999986 99999999997654432211 0
Q ss_pred --------cCCCccEEEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc
Q psy8372 181 --------CDKLDKCYNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251 (883)
Q Consensus 181 --------~~~~~~~~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~ 251 (883)
.........+|+.+.-... ..++||+|+...-+.-. +++...|..+.++|||||+.+-..+..-.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 0011122233333322111 12689999998766666 449999999999999999766655432211110
Q ss_pred ccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 252 YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 252 ~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
-.....+...+.+++..+.+..||+++..+..
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 01122345667889999999999999877663
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.8e-05 Score=92.20 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC------CccceeccCCCCceeeEecCHH-----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG------AREFVVPTHEPNKFYSLVQSPQ-----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g------a~~f~v~~~~~~~~~~L~~Spq-----l~kq~ 410 (883)
-.-.+++.+|.+.+|+.| .+.||.||.||+|.... ..| ..-|.+... .+..++|+...+ ++...
T Consensus 44 P~g~~~~~~i~~~i~~~~-~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~-~~~~l~LrPt~e~~~~~~~~~~ 121 (565)
T PRK09194 44 PLGLRVLRKIENIVREEM-NKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDR-HGRDFVLGPTHEEVITDLVRNE 121 (565)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECcccCcHHHHhhcCCccccchhceEEecC-CCCEEEECCCChHHHHHHHHhh
Confidence 344678999999999999 68999999999997641 112 123554322 256788874222 33433
Q ss_pred HHc-cCCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHH---HHHhccCCCCcee
Q psy8372 411 LMV-GSVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCLNIPTRTFSR 475 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~~~~~~~f~r 475 (883)
+.. ..+. |+|||++|||+| ..+.. |..||+|.|.|....+.++.....++++ ..+++.+.-||..
T Consensus 122 ~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~ 194 (565)
T PRK09194 122 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRA 194 (565)
T ss_pred hhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEE
Confidence 221 1232 999999999999 55555 8899999999998887666555555555 5555555445443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.6e-05 Score=88.11 Aligned_cols=112 Identities=16% Similarity=0.065 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE--
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW-- 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv-- 208 (883)
.++.+|||++||.|.=+.+++.... ..|+++|+++.-++..++++...+..++.+...|...+.... .+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~-~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL-PETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhc-hhhcCeEEEc
Confidence 5788999999999999888887642 279999999999999999998877777777778877653221 35799999
Q ss_pred --Ecc--cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 --IQW--VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 --s~~--vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
|+. ++..-++ + -..++|..+.++|||||+|+-++++-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 432 2222111 1 12678999999999999998888653
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=92.25 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC------CccceeccCCCCceeeEecC-HH----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG------AREFVVPTHEPNKFYSLVQS-PQ----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g------a~~f~v~~~~~~~~~~L~~S-pq----l~kq~ 410 (883)
-.-.+++.+|.+.+|+.| .+.||.||.||+|.... ..| ...|.+..+ .+..++|+.. -+ ++.+.
T Consensus 44 P~g~rv~~~I~~~i~~~~-~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr-~~~~l~LrPT~Ee~~t~~~~~~ 121 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEM-NKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDR-KGREFVLGPTHEEVITDLARNE 121 (568)
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecC-CCCEEEEcCCCcHHHHHHHHHH
Confidence 344678999999999999 68999999999997741 112 223655433 3567888743 22 23433
Q ss_pred HHc-cCCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHH---HHHhccCCCCce
Q psy8372 411 LMV-GSVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCLNIPTRTFS 474 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~~~~~~~f~ 474 (883)
+.. ..+. |+|||++|||+| ..+.. |..||+|.|.|....+.++.....+.++ ..+++.+.-||.
T Consensus 122 i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~ 193 (568)
T TIGR00409 122 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFR 193 (568)
T ss_pred HhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 221 2344 999999999999 65555 8899999999999888777666666554 556555544444
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.7e-05 Score=77.79 Aligned_cols=100 Identities=16% Similarity=0.014 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-e---------EEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-K---------IDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~---------V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 201 (883)
.++..|||--||+|.+....+..+.. . +.|.|+++.+++.|++++...+. ..+.+.+.|+.+++.. +
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~--~ 104 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP--D 104 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT--T
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc--c
Confidence 56789999999999999877665443 3 78999999999999999987643 3457888899888733 3
Q ss_pred CCccEEEEcccccc-cCh-----HHHHHHHHHHHHHhcc
Q psy8372 202 IKYDVIWIQWVLMF-ILD-----EDIIKFLNLCKQILNK 234 (883)
Q Consensus 202 ~~FDlVvs~~vL~h-l~d-----ed~~~~l~~~~r~LKP 234 (883)
+++|.|+++.-.-. +.. +-+..+++++.++|++
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 68999999775432 111 2256778899999998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.1e-05 Score=88.15 Aligned_cols=117 Identities=17% Similarity=0.276 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-C------ccceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-A------REFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-a------~~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+-.-...|..|.+.+++.| ...||.||.||++.... ..| . .-|.+.. ..|..+.|+ -.|++..-.
T Consensus 14 lp~~~~~~~~i~~~i~~~~-~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d-~~g~~l~LRpd~T~~iaR~~ 91 (430)
T CHL00201 14 LPDEINYWQFIHDKALTLL-SLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTD-RSNRDITLRPEGTAGIVRAF 91 (430)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeeecCcccchHHHHhcccCCcccccccceEEEEc-CCCCEEEeCCCCcHHHHHHH
Confidence 3445667999999999999 68999999999997641 112 2 1244422 236677887 444444332
Q ss_pred HHc----cCCC-cEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHH
Q psy8372 411 LMV----GSVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELL 462 (883)
Q Consensus 411 l~~----~~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li 462 (883)
+.. .... |.|++|+|||.|.+...|..||+|+++|+.+.+ -.|++.++-+.+
T Consensus 92 ~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l 152 (430)
T CHL00201 92 IENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIF 152 (430)
T ss_pred HHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHH
Confidence 111 1233 999999999999999999999999999998865 234555444444
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=86.12 Aligned_cols=128 Identities=10% Similarity=0.038 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC------ccceeccCCC---CceeeEecCHH-----HH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA------REFVVPTHEP---NKFYSLVQSPQ-----QL 407 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga------~~f~v~~~~~---~~~~~L~~Spq-----l~ 407 (883)
.-.+++.+|.+.+++.+ .+.||.||.||.|.... . +|. .-|.+..... +..++|+...+ ++
T Consensus 30 ~g~~l~~~l~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~ 108 (261)
T cd00778 30 YGYAIWENIQKILDKEI-KETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMF 108 (261)
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHH
Confidence 44578899999999999 68999999999997652 1 221 1244432211 23578874422 23
Q ss_pred HHHHHc-cCCC-cEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccC-CCCce
Q psy8372 408 KQLLMV-GSVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIP-TRTFS 474 (883)
Q Consensus 408 kq~l~~-~~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~-~~~f~ 474 (883)
+..+.. ..+. |+|||++|||+|...+ .|..||+|.|.+..+.+.+++.+..++++.. |+..+ .-||.
T Consensus 109 ~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~ 184 (261)
T cd00778 109 SKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVV 184 (261)
T ss_pred HhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 333211 1233 8999999999999774 3558999999999999988888888877653 44443 44443
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.4e-05 Score=84.49 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC--eEEEcCCeeccCCCCCCccceecc---CCCCceeeEe--cCHH---HHHHHHHcc-
Q psy8372 346 HNLRFRSKFLMRTREFLATHRD--FVEVETPTLFKRTPGGAREFVVPT---HEPNKFYSLV--QSPQ---QLKQLLMVG- 414 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~g--F~EV~TP~l~~~~~~ga~~f~v~~---~~~~~~~~L~--~Spq---l~kq~l~~~- 414 (883)
.-.+++.+|.+.+|+.| ...| |.||.||+|... .-|.+.. ...+..++|+ +.|. .++......
T Consensus 30 ~g~~l~~~i~~~~~~~~-~~~g~~~~~i~tP~i~~~-----~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 30 LGVELKNNIKSAWRKSF-VLEEEDMLEIDSPIITPE-----LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred hHHHHHHHHHHHHHHHH-HhcCCCeEEEeccccCCH-----HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 34578999999999999 5675 999999999764 2344321 1123456775 3432 244433222
Q ss_pred -CCC-cEEEEeeceecCCCCC---CCCcceecccccccCC
Q psy8372 415 -SVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFT 449 (883)
Q Consensus 415 -~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~ 449 (883)
.+. |+||||+|||+|.+.. .|..||||.|+|.-..
T Consensus 104 ~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 233 9999999999998765 6779999999999553
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.3e-05 Score=82.50 Aligned_cols=110 Identities=14% Similarity=0.005 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHhhccCCCc--cEEEccCCCCC---C-CcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKDCDKLD--KCYNVGIQDFK---P-EDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-----~~~V~gvD~S~~~le~A~~~~~~~~~~~~--~~~~~d~~~~~---~-~~~~ 201 (883)
+++..|+|+|||+|.=+..++... ...++++|+|..+++.+.+++.....+.+ ..+++|..+.. + ....
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 466789999999999776665432 22699999999999999999883322322 34677765431 1 1112
Q ss_pred CCccEEEE-cccccccChHHHHHHHHHHHH-HhccCcEEEEEe
Q psy8372 202 IKYDVIWI-QWVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIKD 242 (883)
Q Consensus 202 ~~FDlVvs-~~vL~hl~ded~~~~l~~~~r-~LKPGG~lvi~~ 242 (883)
....+++. ..++..+++++...+|+++++ .|+|||.|++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 34566665 558999988889999999999 999999998865
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.8e-05 Score=80.61 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCcc-EEEccCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDK-CYNVGIQ 193 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~-~~~~d~~ 193 (883)
.....+.++.... ..-...+|||+|||+|..+-.+... ...+++++|.|+.|++.++............ .......
T Consensus 17 ~~~~vl~El~~r~-p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 95 (274)
T PF09243_consen 17 AVYRVLSELRKRL-PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR 95 (274)
T ss_pred HHHHHHHHHHHhC-cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc
Confidence 3444555554332 2234569999999999866433322 2348999999999999999876644221111 1111111
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
+.... ...|+|+++++|..++++....+++.+.+.+.+ .|++.++.... ......+.++.+.+.
T Consensus 96 ~~~~~---~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~-----------Gf~~i~~aR~~l~~~ 159 (274)
T PF09243_consen 96 DFLPF---PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA-----------GFRRIAEARDQLLEK 159 (274)
T ss_pred ccccC---CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH-----------HHHHHHHHHHHHhhC
Confidence 11111 234999999999999887777888888777765 88888753221 122344677777777
Q ss_pred ccccccc
Q psy8372 274 NLKCVKS 280 (883)
Q Consensus 274 Gf~vv~~ 280 (883)
|+.++.-
T Consensus 160 ~~~v~AP 166 (274)
T PF09243_consen 160 GAHVVAP 166 (274)
T ss_pred CCceECC
Confidence 7777753
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=85.33 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
.....+.|+... +.+..+||+|||.|..+.. ... ..+.|.|.+...+..|++.... ....+|+.
T Consensus 32 ~Wp~v~qfl~~~-------~~gsv~~d~gCGngky~~~--~p~-~~~ig~D~c~~l~~~ak~~~~~------~~~~ad~l 95 (293)
T KOG1331|consen 32 PWPMVRQFLDSQ-------PTGSVGLDVGCGNGKYLGV--NPL-CLIIGCDLCTGLLGGAKRSGGD------NVCRADAL 95 (293)
T ss_pred ccHHHHHHHhcc-------CCcceeeecccCCcccCcC--CCc-ceeeecchhhhhccccccCCCc------eeehhhhh
Confidence 345677777777 5688999999999987641 111 1588999999999888765331 35778888
Q ss_pred CCCCCcCCCCccEEEEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
..+... .+||.+++..++||+.. .....+++++.|+|+|||..++..+...
T Consensus 96 ~~p~~~--~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 96 KLPFRE--ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred cCCCCC--CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 777655 79999999999999975 4467899999999999999988876543
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=76.64 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.++.++|+|||.|.++......+...|.|+|+.+.+++.+++++.+.... ++++++|+.+..+.. +.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~--g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKG--GIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhccC--CeEeeEEecCCC
Confidence 57899999999999996555556668999999999999999998876433 378999999887765 799999998766
Q ss_pred c
Q psy8372 214 M 214 (883)
Q Consensus 214 ~ 214 (883)
-
T Consensus 125 G 125 (185)
T KOG3420|consen 125 G 125 (185)
T ss_pred C
Confidence 3
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.4e-05 Score=81.94 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=83.4
Q ss_pred CeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhcc----CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+||-||.|.|.++..+++.. ..+++.||+++..++.|++.+.... ..+++.+..|..++.... .++||+|++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEc
Confidence 699999999999999888876 4489999999999999999887664 566788888887776544 2489999986
Q ss_pred ccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..=.--+.+. -..+++.++++|+++|.++...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 5432111010 2589999999999999999884
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.3e-06 Score=83.29 Aligned_cols=165 Identities=20% Similarity=0.216 Sum_probs=103.3
Q ss_pred ccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHh
Q psy8372 99 TIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 178 (883)
Q Consensus 99 ~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~ 178 (883)
.++++.+ .+.+.-+...+.+.++.--. ......+.++||+|+|.|..+..+ +..+.+|++.+.|..|..+.+++.-
T Consensus 80 dING~lg-rGsMFifSe~QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m-~p~feevyATElS~tMr~rL~kk~y 155 (288)
T KOG3987|consen 80 DINGFLG-RGSMFIFSEEQFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRM-APTFEEVYATELSWTMRDRLKKKNY 155 (288)
T ss_pred ccccccc-cCceEEecHHHHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhh-cchHHHHHHHHhhHHHHHHHhhcCC
Confidence 3444443 56666666665555544331 122344579999999999999855 4445679999999999888776522
Q ss_pred hccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhcc-CcEEEEEecccCCC---------
Q psy8372 179 KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK-NGIIIIKDNVASGV--------- 248 (883)
Q Consensus 179 ~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKP-GG~lvi~~~~~~~~--------- 248 (883)
-.....++...+ -+||+|.|.++|....+ +-++++.++.+|+| .|+++++-...-..
T Consensus 156 ---------nVl~~~ew~~t~--~k~dli~clNlLDRc~~--p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~ 222 (288)
T KOG3987|consen 156 ---------NVLTEIEWLQTD--VKLDLILCLNLLDRCFD--PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGL 222 (288)
T ss_pred ---------ceeeehhhhhcC--ceeehHHHHHHHHhhcC--hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCC
Confidence 111222222221 37999999999986644 78999999999999 88887754321111
Q ss_pred c----ccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 K----NEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~----~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
. ..+.....++......+..+|+.+||.+..=
T Consensus 223 ~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 223 PLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred cCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 0 0111111222222335677899999987643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.2e-05 Score=90.39 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
....+||||||.|.++..++...++ .++|+|++...+..|.++....+..++.++..|+..+...-.++++|.|+.+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4567999999999999989888776 799999999999998888777666777777776643322222468999998765
Q ss_pred ccccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
=.|.... --..++..++++|||||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4443211 12479999999999999999987
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.9e-05 Score=82.37 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. .-|.+. ..+..++|+ .-|.+ |...
T Consensus 27 p~g~~l~~~l~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~ 103 (298)
T cd00771 27 PKGAIIRNELEDFLRELQ-RKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSK 103 (298)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhh
Confidence 344678899999999999 68999999999997752 1121 125553 224567886 22222 2322
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCC
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFT 449 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~ 449 (883)
... ..+. |+|++++|||+|.+.. .|..||+|.|+++...
T Consensus 104 ~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~ 148 (298)
T cd00771 104 PRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT 148 (298)
T ss_pred ccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC
Confidence 111 1233 9999999999998753 4668999999998644
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=5e-05 Score=86.16 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+.+|||+.||+|..+..++.+ |..+|+++|+++.+++.+++++..+....+.+++.|+..+.... ...||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCC-
Confidence 358999999999999999887 56789999999999999999998765555678888877654321 24799999866
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+ .. +..++..+.+.+++||.++++.
T Consensus 123 f-Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F-GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 2 33 3478999999999999999985
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=76.86 Aligned_cols=121 Identities=27% Similarity=0.270 Sum_probs=92.6
Q ss_pred ccchHHHHHHHHHHhhcccCCCC-CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEE
Q psy8372 112 DLDIQTSNQFLSSLYCQKKSDPG-KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189 (883)
Q Consensus 112 ~~~~~~~~~lL~~l~~~~~~~~~-~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~ 189 (883)
.......+.+++.+...... .. +.+++|||+|.|.-+..++-..++ +|+.+|....=+...+....+.+.+++++++
T Consensus 45 ~~~e~~~rHilDSl~~~~~~-~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~ 123 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYL-DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVH 123 (215)
T ss_pred CHHHHHHHHHHHHhhhhhcc-cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEeh
Confidence 34455667777777543222 22 579999999999999877644444 6999999998888888888877888889999
Q ss_pred ccCCCCCCCcCCCC-ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 190 VGIQDFKPEDLNIK-YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 190 ~d~~~~~~~~~~~~-FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.++++.... . ||+|+|..+. .+..++.-+..++|+||.++..-
T Consensus 124 ~RaE~~~~~~---~~~D~vtsRAva------~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 124 GRAEEFGQEK---KQYDVVTSRAVA------SLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred hhHhhccccc---ccCcEEEeehcc------chHHHHHHHHHhcccCCcchhhh
Confidence 9999887644 3 9999998763 25667888999999999876544
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=66.51 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=70.1
Q ss_pred EEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCC--CCCCcCCCCccEEEEccc
Q psy8372 138 VLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQD--FKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~--~~~~~~~~~FDlVvs~~v 212 (883)
+||+|||+|..+ .+..... ..++|+|+++.++..++..... .... +.+...+... .+... ...||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFED-SASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCC-CCceeEEeeeee
Confidence 999999999976 2333332 2589999999999996655432 2111 3566666655 22221 137999944444
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.++. . ....+.++.+.|+|+|.+++......
T Consensus 129 ~~~~-~--~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLL-P--PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcC-C--HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4444 3 67899999999999999999886543
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=82.64 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC----CCC---ccceeccCCCCceeeEe--cCHHHHHHHHHc-c
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP----GGA---REFVVPTHEPNKFYSLV--QSPQQLKQLLMV-G 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~----~ga---~~f~v~~~~~~~~~~L~--~Spql~kq~l~~-~ 414 (883)
..-.+++..|...+++.| .++||.||+||++..... +|. ..|.+... .|+.+.|+ -.+++..-.+.. .
T Consensus 5 p~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~ 82 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVF-RSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDS-LGRVLGLRPDMTTPIARAVSTRLR 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeeccCcchhhHHHhcccCCcchhceEEEECC-CCCEEeecCcCcHHHHHHHHHhcc
Confidence 344678899999999999 689999999999976421 121 12444322 36778887 344454433211 1
Q ss_pred C---CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 415 S---VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 415 ~---~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
+ --|+|++|+|||.|.....|..||+|+++|+-+.+ -.|++.++-+.+..+
T Consensus 83 ~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l 140 (314)
T TIGR00443 83 DRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL 140 (314)
T ss_pred cCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 2 24999999999999998888899999999998765 345555555555443
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=74.84 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcC-CCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~FDlVvs~~ 211 (883)
.+.++||+=+|+|.++..++++|...++.||.+..++...+++..... .....++..|+..+..... .+.||+|+...
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 578999999999999999999999999999999999999999988764 3455778888775422211 13599999988
Q ss_pred cccc-cChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMF-ILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~h-l~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
-++. +.+.......-.-..+|+|+|.+++....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 7662 11111122222255789999999998743
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=84.50 Aligned_cols=120 Identities=22% Similarity=0.211 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CC---C-ccceeccCCCCceeeEe--cCHHHHHHHHHc-
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GG---A-REFVVPTHEPNKFYSLV--QSPQQLKQLLMV- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~g---a-~~f~v~~~~~~~~~~L~--~Spql~kq~l~~- 413 (883)
..-.+.+..+...+++.| .++||.||.||++.... . .| . ..|.+.-...|..+.|+ ..+++..-++..
T Consensus 14 p~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~ 92 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLF-RRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhc
Confidence 455678899999999999 68999999999996531 1 11 1 12444332146778887 444454433211
Q ss_pred cC---CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 414 GS---VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 414 ~~---~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
.. --|+|++|+|||.|.....|..||+|+++|+.+.+ -.|++.++-+.+..+
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 11 12999999999999999999999999999998876 356666666655544
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=86.43 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC----------CC----ccceeccC------------------
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG----------GA----REFVVPTH------------------ 392 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~----------ga----~~f~v~~~------------------ 392 (883)
..-...+..+.+.+|+.| ...||.||.||.+..+-.+ .| ..|.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~f-~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he 307 (489)
T PRK04172 229 PGKKHPYREFIDEVRDIL-VEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHE 307 (489)
T ss_pred CCCCChHHHHHHHHHHHH-HHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHh
Confidence 344567889999999999 6899999999999742000 01 01111100
Q ss_pred ----------------CCCceeeEe--cCHHHHHHHHHccCC-CcEEEEeeceecCCCCCCCCcceecccccccCC--CH
Q psy8372 393 ----------------EPNKFYSLV--QSPQQLKQLLMVGSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TR 451 (883)
Q Consensus 393 ----------------~~~~~~~L~--~Spql~kq~l~~~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~ 451 (883)
..+....|+ .+|-+..-+.--+.. -|+|+||+|||+|..+..|.+||+|+++.+.+. ++
T Consensus 308 ~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f 387 (489)
T PRK04172 308 HGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSF 387 (489)
T ss_pred ccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCH
Confidence 001223454 233233322111111 299999999999998888889999999999986 57
Q ss_pred HHHHHHHHHHHHHH
Q psy8372 452 DDVMRLIEELLCYC 465 (883)
Q Consensus 452 ~dvm~~~E~li~~i 465 (883)
.+++.++++++..+
T Consensus 388 ~elkg~l~~ll~~l 401 (489)
T PRK04172 388 RDLLGILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888654
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=74.48 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCC--eEEEEeCCHHHHHHHHHHHhhcc----------CCCccEEEccCCCCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFD--KIDLLEQSSKFIEQAKEEILKDC----------DKLDKCYNVGIQDFKPED 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~--~V~gvD~S~~~le~A~~~~~~~~----------~~~~~~~~~d~~~~~~~~ 199 (883)
.++.+.||+|+|+|+++..++.. +.. .++|||.-++.++.+++++.... .....++.+|.....+..
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 47889999999999998765532 222 35899999999999999877542 123356677776655544
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+||.|++..... ...+++...|+|||.+++..
T Consensus 161 --a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 161 --APYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --CCcceEEEccCcc--------ccHHHHHHhhccCCeEEEee
Confidence 6899999985433 34566778899999999876
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.4e-05 Score=85.91 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++..++|+|||.|....++...+...++|+|.++..+..+........ .+...++..++...++.+ +.||.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed--n~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED--NTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc--cccCcEEEEe
Confidence 4566899999999999998887776679999999998888877665542 233456777777766665 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+|.++ ...++++++|++||||+++..+...
T Consensus 187 ~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 187 VVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ecccCCc--HHHHHHHHhcccCCCceEEeHHHHH
Confidence 9999987 8899999999999999999987653
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=78.52 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCCh--HHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEc
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGR--ISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~--~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~ 190 (883)
.+..+.|+............-...||+|||-=. ....++... +. +|+-+|..|-.+..++..+.........++++
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a 128 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence 345566666665443332234579999999642 444555442 22 79999999999999999887654334678999
Q ss_pred cCCCCCC----------CcCCCCccEEEEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cc
Q psy8372 191 GIQDFKP----------EDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY 252 (883)
Q Consensus 191 d~~~~~~----------~~~~~~FDlVvs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~ 252 (883)
|+.+... .++ +.-=.|++..+|||+++ +++..+++.++..|.||.+|+++..+...... .+
T Consensus 129 D~r~p~~iL~~p~~~~~lD~-~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~ 207 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDF-DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVY 207 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--T-TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHH
T ss_pred CCCCHHHHhcCHHHHhcCCC-CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9876421 111 12226778889999987 77999999999999999999999876543211 11
Q ss_pred c-CCcccccccchhhhhhhhhcccccc
Q psy8372 253 D-DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 253 ~-~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
. .......++.+++..+|. ||+++
T Consensus 208 ~~~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 208 AQAGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp HHCCS----B-HHHHHHCCT--TSEE-
T ss_pred HcCCCCceecCHHHHHHHcC--CCccC
Confidence 1 233455677778888886 77665
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=87.79 Aligned_cols=121 Identities=20% Similarity=0.287 Sum_probs=85.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc---cceeccCCCCceeeEe---cCHHHHHHHH
Q psy8372 342 PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR---EFVVPTHEPNKFYSLV---QSPQQLKQLL 411 (883)
Q Consensus 342 ~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~---~f~v~~~~~~~~~~L~---~Spql~kq~l 411 (883)
+.+-.-..+|..|...+++.| ..+||.||.||++.... ..|.. .|.+.- ..|+.+.|+ +.| +..-++
T Consensus 335 D~lP~e~~~re~I~~~L~~vF-k~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D-~gGr~LaLRPDlTvP-iAR~vA 411 (763)
T PLN02972 335 DFAKEQMAIREKAFSIITSVF-KRHGATALDTPVFELRETLMGKYGEDSKLIYDLAD-QGGELCSLRYDLTVP-FARYVA 411 (763)
T ss_pred cCCHHHHHHHHHHHHHHHHHH-HHcCCEEccCCcccchHHhhcccCcchhheEEEEC-CCCCEEEeCCCChHH-HHHHHH
Confidence 445666788999999999999 68999999999996531 11221 243332 236677787 444 544333
Q ss_pred HccC-CCcEEEEeeceecCCCCCCCCcceecccccccCC-C----HHHHHHHHHHHHHHH
Q psy8372 412 MVGS-VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCYC 465 (883)
Q Consensus 412 ~~~~-~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~i 465 (883)
+-.. --|.|+||+|||.|.....|..||+|+++|+.+. + -.|++.++-+.+..+
T Consensus 412 ~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L 471 (763)
T PLN02972 412 MNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL 471 (763)
T ss_pred hCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC
Confidence 2111 2378899999999999888999999999999885 2 356777766666543
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=82.32 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC----ccceeccCCCCceeeEe--cCHHHHHHHHH-
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLM- 412 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~- 412 (883)
+-.-.+.+..|.+.+++.| ..+||.||+||++.... . .|. ..|.+.-...|+...|+ ..+++..-...
T Consensus 17 lp~e~~~~~~i~~~l~~~f-~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~ 95 (392)
T PRK12421 17 LPEEAQKIERLRRRLLDLF-ASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHL 95 (392)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhh
Confidence 3455668899999999999 68999999999996532 1 121 12443322236667786 33444442111
Q ss_pred -c-cCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 413 -V-GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 413 -~-~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
. ..--|.|++|+|||.+.....|..||+|+.+|+.+.+ -.|++.++-+.++.+
T Consensus 96 ~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 96 LNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred cCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 1 1224999999999999988889999999999998876 357777776666554
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=76.52 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++..|||+.||.|.++..++.. ....|+++|++|.+++.+++++..+.. ..+..+.+|+.++.. .+.||.|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEEEC
Confidence 56889999999999999988773 334799999999999999999887743 446788999988766 2689999986
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
.. +. ...+|..+.+++++||.+-
T Consensus 177 lp--~~----~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP--ES----SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T--SS----GGGGHHHHHHHEEEEEEEE
T ss_pred Ch--HH----HHHHHHHHHHHhcCCcEEE
Confidence 53 11 2258888999999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=79.01 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+...+||=||.|.|..+..+++.. ..+++.||+++.+++.|++.+... ...+++.+..|...+.......+||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357799999999999998877654 348999999999999999977653 245678888888765443312289999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+....-...+... -..+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9844322111111 2479999999999999999876
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=80.27 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC---ccceeccCCCCceeeEe--cCHHHHHHHHHc--
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA---REFVVPTHEPNKFYSLV--QSPQQLKQLLMV-- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga---~~f~v~~~~~~~~~~L~--~Spql~kq~l~~-- 413 (883)
..-.+.+..+.+.+++.| .++||.||+||++.... . .|. ..|.+.- ..|..+.|+ ..+++..-++..
T Consensus 7 ~~~~~~~~~i~~~l~~~f-~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D-~~G~~l~LR~D~T~~iaR~~a~~~~ 84 (311)
T PF13393_consen 7 PEEARKRERIESKLREVF-ERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLD-RSGRVLALRPDLTVPIARYVARNLN 84 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEEC-TTSSEEEE-SSSHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEECCeEeecHHhhhccccchhhhEEEEe-cCCcEeccCCCCcHHHHHHHHHhcC
Confidence 445678899999999999 68999999999997642 1 111 2344433 247778887 444565554432
Q ss_pred -cCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHH
Q psy8372 414 -GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLC 463 (883)
Q Consensus 414 -~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~ 463 (883)
....|+|++|++||.+.....+..||+|+.+|..+.+ -.|++.++-+++.
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 2335999999999999888888899999999998876 3477777777775
|
... |
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=84.26 Aligned_cols=119 Identities=20% Similarity=0.331 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc----cceeccCCCCceeeEe--cCHHHHHHHHHc
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMV 413 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~ 413 (883)
+-.-..+|..|.+.+++.| ...||.||.||+|.... ..|.. -|.+.. ..|+.+.|+ ..|++..-.+..
T Consensus 80 lp~~~~~~~~i~~~~~~~~-~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D-~~g~~l~LRpD~T~~iaR~~~~~ 157 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVS-RLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFED-KGGRRVALRPELTPSLARLVLQK 157 (487)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHhccccCcccccceEEEEC-CCCCEEecCCCCcHHHHHHHHhc
Confidence 3455678999999999999 68999999999997631 11221 243322 236677776 344454433211
Q ss_pred c---CC-CcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 414 G---SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 414 ~---~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
. .+ -|.|++++|||.|.....|..||+|+++|+.+.+ ..|++.++-+.+..
T Consensus 158 ~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~ 216 (487)
T PLN02530 158 GKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKR 216 (487)
T ss_pred ccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHH
Confidence 1 12 2899999999999999999999999999998876 34566655554433
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00021 Score=80.98 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCC---CeEEEc--CCeeccCCCCCCccceecc--CCCCceeeE--------ecCHHHHHHHHHccCCC
Q psy8372 353 KFLMRTREFLATHR---DFVEVE--TPTLFKRTPGGAREFVVPT--HEPNKFYSL--------VQSPQQLKQLLMVGSVD 417 (883)
Q Consensus 353 ~i~~~iR~f~~~~~---gF~EV~--TP~l~~~~~~ga~~f~v~~--~~~~~~~~L--------~~Spql~kq~l~~~~~~ 417 (883)
.+...|+++| .+. ||.+++ .|+.+..-.=.+-.|+.++ +.....||+ .+|+-+..-| ..+-.
T Consensus 72 ~~~~~i~~~f-~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l--~~~~~ 148 (402)
T PLN02788 72 ILKNAIYDYF-DENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELL--RAGHT 148 (402)
T ss_pred HHHHHHHHHH-hhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHH--HhCCC
Confidence 3456666777 454 899998 5655332111222233322 233344455 2676433332 34557
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC--------------CCHHHHHHHHHHHHHHHhc
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF--------------TTRDDVMRLIEELLCYCLN 467 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--------------~~~~dvm~~~E~li~~i~~ 467 (883)
|++.+|+|||+|..+.+|.|+|+|+|.-+.+ .+..++...+|.++..++.
T Consensus 149 ~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg 212 (402)
T PLN02788 149 HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFG 212 (402)
T ss_pred cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987776 4478899999999987753
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=82.83 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCCc------cceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGAR------EFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga~------~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
+-.-..++..|.+.+++.| ..+||.||.||+|.... . .|+. .|.+... .|..+.|+ -.+++..-++
T Consensus 14 ~p~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va 91 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVF-ERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVA 91 (423)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHH
Confidence 4455678899999999999 68999999999996641 1 1211 2443322 36667776 3333444333
Q ss_pred HccC--CC-cEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 412 MVGS--VD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 412 ~~~~--~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
.-.. .. |.|++|+|||.|.....|..||+|+++|+.+.+ ..|++.++-+.++.+
T Consensus 92 ~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 92 MNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred hCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 2122 23 899999999999988888899999999998865 467777766555543
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=82.16 Aligned_cols=126 Identities=14% Similarity=0.273 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCC--------ccceeccCCCCceeeEecCHHHHHHHHHcc-
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGA--------REFVVPTHEPNKFYSLVQSPQQLKQLLMVG- 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga--------~~f~v~~~~~~~~~~L~~Spql~kq~l~~~- 414 (883)
....++..+|.+.+++.+ .+.||.||.||.|.... -.++ ..|.+. +..++|....+.-.-.+...
T Consensus 170 p~g~~l~~aL~~~~~~~~-~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~----~~~~~L~pTsE~~~~~~~~~~ 244 (418)
T TIGR00414 170 NDGAKLERALINFMLDLL-EKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE----DTDLYLIPTAEVPLTNLHRNE 244 (418)
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcCccccccccceEec----CCCEEEEeCCcHHHHHHHhCc
Confidence 356889999999999999 57899999999998752 1111 124442 34567865443222111111
Q ss_pred -----CCC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceee
Q psy8372 415 -----SVD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRI 476 (883)
Q Consensus 415 -----~~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~ri 476 (883)
.+. |+|++++|||+|.... -|..||+|.|. ..|.+-++..+..++++.. +++.+.-||..+
T Consensus 245 i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v 321 (418)
T TIGR00414 245 ILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAEQILQELELPYRVV 321 (418)
T ss_pred CCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 122 8999999999997532 25689999999 5688878887777777764 344455555544
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=82.28 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs~~ 211 (883)
.++.+|||+=||.|.++..++. ...+|+|+|+++.+++.|+++++.++..++.|..+++.++..... ...+|.|+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 4667999999999999997764 455799999999999999999999887778999999988765431 24789999865
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
-=.-+.. .+++.+. .++|...++++.+.. |...-...|...|+++.+...-..||
T Consensus 371 PR~G~~~----~~lk~l~-~~~p~~IvYVSCNP~----------------TlaRDl~~L~~~gy~i~~v~~~DmFP 425 (432)
T COG2265 371 PRAGADR----EVLKQLA-KLKPKRIVYVSCNPA----------------TLARDLAILASTGYEIERVQPFDMFP 425 (432)
T ss_pred CCCCCCH----HHHHHHH-hcCCCcEEEEeCCHH----------------HHHHHHHHHHhCCeEEEEEEEeccCC
Confidence 3222211 3444444 467888999988422 23344566777777766666666665
|
|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=79.51 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCcccee--ccCCC------CceeeEe--cCHHHHHHHHHccCC---
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAREFVV--PTHEP------NKFYSLV--QSPQQLKQLLMVGSV--- 416 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~~f~v--~~~~~------~~~~~L~--~Spql~kq~l~~~~~--- 416 (883)
...+.+.+|++| ...||.|+.||.++... .-.+-.+.. |.+.. .....|+ .+|-+..- |....
T Consensus 74 ~~~~~~~ir~~l-~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~--l~~N~~~p 150 (294)
T TIGR00468 74 LTRVIDEIRDIF-LGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRT--MEENEKPP 150 (294)
T ss_pred HHHHHHHHHHHH-HHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHH--HHhcCCCC
Confidence 456777889999 58999999999997541 100000110 00000 0122355 45544333 23344
Q ss_pred CcEEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHHH
Q psy8372 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~i 465 (883)
-|+|+||+|||++..+..|.|||+|++.-+.. .++.++...+|.++..+
T Consensus 151 irlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 151 IRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred ceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 39999999999988777788999999988765 37999999999988765
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0004 Score=76.04 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC----CCccceeccCCCCceeeEe--cCHHHHHHHHHc---cC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG----GAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV---GS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~----ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~---~~ 415 (883)
..-...+..|.+.+++.| ...||.||+||++.....- ....|.+... .|+.+.|+ ..+++..-.+.. ..
T Consensus 16 p~e~~~~~~i~~~l~~vf-~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~ 93 (281)
T PRK12293 16 GKSAKLKREIENVASEIL-YENGFEEIVTPFFSYHQHQSIADEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRST 93 (281)
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCeEeeccceeehhhhcccchhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCC
Confidence 445568889999999999 6899999999999654221 1123544322 36677786 344454433211 11
Q ss_pred -CCcEEEEeeceecCCCCCCCCcceecccccccCCC-HHHHHHHHHHHHH
Q psy8372 416 -VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT-RDDVMRLIEELLC 463 (883)
Q Consensus 416 -~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~-~~dvm~~~E~li~ 463 (883)
--|.|++|+|||.|. .||+|+.+|+.+.+ ..|++.++-+.++
T Consensus 94 ~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~ 137 (281)
T PRK12293 94 EHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFE 137 (281)
T ss_pred CceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHH
Confidence 139999999999984 69999999999876 5455554444433
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00057 Score=73.73 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQ 193 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~ 193 (883)
..+.|.+.... . .+...+||=||.|.|..+..+++.. .+|+.||+++.+++.|++.++.. ..++++.+. .
T Consensus 58 YHEmLvHppl~-~-h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~-- 131 (262)
T PRK00536 58 ESELLAHMGGC-T-KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q-- 131 (262)
T ss_pred HHHHHHHHHHh-h-CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h--
Confidence 34445554322 2 2456799999999999999998864 47999999999999999966543 234444443 1
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+. ....++||+|++-.. . ...+.+.++++|+|||.++...
T Consensus 132 -~~-~~~~~~fDVIIvDs~----~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 132 -LL-DLDIKKYDLIICLQE----P---DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -hh-hccCCcCCEEEEcCC----C---ChHHHHHHHHhcCCCcEEEECC
Confidence 11 111258999998753 1 2468899999999999999875
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00025 Score=86.63 Aligned_cols=104 Identities=24% Similarity=0.290 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-c-----cceeccCCCCceeeEe--cCHHH---HHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-R-----EFVVPTHEPNKFYSLV--QSPQQ---LKQ 409 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-~-----~f~v~~~~~~~~~~L~--~Spql---~kq 409 (883)
+-.-.+++..|.+.+++.+ ...||.||.||+|.... .+|. . -|.+.. ..+..+.|+ ..|.. |.+
T Consensus 266 lp~~~~~~~~i~~~~~~~~-~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKL-RKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTE-SDGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred cccHHHHHHHHHHHHHHHH-HHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeec-CCCcEEEEecCCcHHHHHHHhC
Confidence 3456778999999999999 68999999999997642 1232 1 244422 235778886 33432 222
Q ss_pred HHHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCC
Q psy8372 410 LLMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFT 449 (883)
Q Consensus 410 ~l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~ 449 (883)
.... ..+. |+|++|+|||.|.+.. .|..||+|+|+|.-..
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~ 389 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCT 389 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcC
Confidence 1111 1233 9999999999998863 3778999999998443
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00023 Score=84.43 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCc------cceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGAR------EFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~------~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.++|..|.+.+|+.+ .+.||.||.||.|.... ..|.- -|.+. ..+..++|+ .-|-+ |++.
T Consensus 165 P~G~~i~~~L~~~~r~~~-~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~--~~~e~~~LrPm~cp~~~~~~~~~ 241 (545)
T PRK14799 165 PKGQTIRNELIAFMREIN-DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN--MEGDEYGVKPMNCPAHILIYKSK 241 (545)
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCeEEECCccchHHHHhhccccccchhhcceee--ccCceEEeccCCCHHHHHHHhcc
Confidence 345679999999999999 68999999999996642 23322 13332 225677886 33322 3332
Q ss_pred HHcc-CCC-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 411 LMVG-SVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 411 l~~~-~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
.-.. .+. |+|++|+|||.|.+.. .|-.||||.|+.. |.+.+++.+.+.+++.-
T Consensus 242 ~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~ 300 (545)
T PRK14799 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISK 300 (545)
T ss_pred ccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHH
Confidence 1111 233 9999999999999986 6789999999998 87766665555554443
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00059 Score=75.95 Aligned_cols=107 Identities=23% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..|.+|||.=||.|.++..++..+...|+++|++|.+++..++++.-+.... +..+.+|+.+..+.. +.+|-|++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEEeCC
Confidence 4689999999999999998888887779999999999999999998775444 788999998887653 5899999876
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.- . ...++..+.+.+++||.+-..+...+.
T Consensus 265 p~----~--a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 265 PK----S--AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CC----c--chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 42 1 347888899999999999998866543
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00056 Score=82.33 Aligned_cols=110 Identities=22% Similarity=0.238 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCc------cceeccCCCCceeeEecC--HHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGAR------EFVVPTHEPNKFYSLVQS--PQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~------~f~v~~~~~~~~~~L~~S--pql---~kq~ 410 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|.. -|.+.. ..++.++|+.- |.+ |.+.
T Consensus 197 p~g~~~~~~i~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~ 274 (563)
T TIGR00418 197 PKGATIRNLLEDFVRQKQ-IKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSS 274 (563)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCc
Confidence 455778999999999999 68999999999997642 12321 133322 12577888722 222 2222
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
... ..+. |+|++|+|||+|.+.. .|..||+|.|+|.-.. .++....
T Consensus 275 ~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e 326 (563)
T TIGR00418 275 LRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEE 326 (563)
T ss_pred CCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHH
Confidence 111 1233 9999999999995532 2778999999998655 3444333
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0004 Score=80.40 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCC--------ccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGA--------REFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga--------~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
....++..+|++.+++.+..+.||.||.||.|.... ..++ ..|.+. +..++|....+.-.-.++...
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~----~~~~~L~pTsE~~l~~l~~~~ 242 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE----DDDLYLIPTAEVPLTNLHRDE 242 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec----CCCEEEEeCCcHHHHHHHhcc
Confidence 356789999999999988327899999999998752 1221 124443 345677643332211112211
Q ss_pred ------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCcee
Q psy8372 416 ------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSR 475 (883)
Q Consensus 416 ------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~r 475 (883)
+. |+|++++|||+|.... -|..||+|.|.+ .|...++..+..++++.. ++..+.-||..
T Consensus 243 ~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~ 318 (425)
T PRK05431 243 ILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAEEILQKLELPYRV 318 (425)
T ss_pred cCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 22 9999999999998542 255899999998 587778877777777754 34445545543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00096 Score=75.50 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
.......++........ ..++ +|||+-||.|.++..++ ..+.+|+|||.++.+++.|++++..++..+++|+.+++.
T Consensus 178 N~~~~~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp BHHHHHHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred cHHHHHHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 34445555555433222 2233 89999999999998664 445679999999999999999999888888899988765
Q ss_pred CCCCC--------------cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccc
Q psy8372 194 DFKPE--------------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 259 (883)
Q Consensus 194 ~~~~~--------------~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~ 259 (883)
++... .....+|+|+....=.-+.. .++..+. ++.=.+++++... ..
T Consensus 255 ~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~----~~~~~~~---~~~~ivYvSCnP~------------tl 315 (352)
T PF05958_consen 255 DFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDE----KVIELIK---KLKRIVYVSCNPA------------TL 315 (352)
T ss_dssp HCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCH----HHHHHHH---HSSEEEEEES-HH------------HH
T ss_pred chhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchH----HHHHHHh---cCCeEEEEECCHH------------HH
Confidence 54221 00125899987543222221 2333332 3344666665211 11
Q ss_pred cccchhhhhhhhhcccccccccCCCCCc
Q psy8372 260 VRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..++..+ .+ |+++.....-..||
T Consensus 316 ---aRDl~~L-~~-~y~~~~v~~~DmFP 338 (352)
T PF05958_consen 316 ---ARDLKIL-KE-GYKLEKVQPVDMFP 338 (352)
T ss_dssp ---HHHHHHH-HC-CEEEEEEEEE-SST
T ss_pred ---HHHHHHH-hh-cCEEEEEEEeecCC
Confidence 2233333 33 89988877777776
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00069 Score=77.50 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
.++|-+|||.-.++..+.+.|+..|+.+|+|+..++.+..+.. .......+...|+....+.. ++||+|+.-..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fed--ESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFED--ESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCC--cceeEEEecCcccc
Confidence 3999999999999999999999999999999999998887664 22334467788888777665 79999999999988
Q ss_pred cCh-H-------HHHHHHHHHHHHhccCcEEEEEec
Q psy8372 216 ILD-E-------DIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 216 l~d-e-------d~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+-. + .....+.+++|+|+|||+.+....
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 732 1 234678999999999999888775
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0002 Score=73.01 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC------CCCc--CCCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF------KPED--LNIK 203 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~------~~~~--~~~~ 203 (883)
++.+|||+||++|.++..++..+ ...|+|+|+.+.. ....+.++++|+.+. .... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999888777 3489999998761 111222333333221 1110 1258
Q ss_pred ccEEEEcccccccCh---------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 204 YDVIWIQWVLMFILD---------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 204 FDlVvs~~vL~hl~d---------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+|+|-.+.....+ +-....+.-+...|+|||.+++....
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 999999773221110 22445566666889999999998853
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00052 Score=79.95 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEec-C----HHHHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQ-S----PQQLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~-S----pql~kq~l 411 (883)
.-.+++.+|.+.+|+-+ .+.||.||.||.|.... ..|. .-|.+... .+..++|+. + ..+++..+
T Consensus 45 ~g~~i~~~i~~~i~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~-~~~~~~L~Pt~e~~~~~~~~~~~ 122 (439)
T PRK12325 45 LGLKVLKKIENIVREEQ-NRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDR-HDREMLYGPTNEEMITDIFRSYV 122 (439)
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhheEEecC-CCCEEEEcCCCcHHHHHHHHHHh
Confidence 44678999999999999 68999999999997641 1121 22554322 256778874 3 12344442
Q ss_pred Hc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 412 MV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 412 ~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
.. ..+. |+|||+++||+|... .. |..||+|-|.+....+.+++.+..++++.
T Consensus 123 ~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~ 179 (439)
T PRK12325 123 KSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFV 179 (439)
T ss_pred hhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHH
Confidence 21 1233 999999999999543 23 67999999999987887766665555554
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00048 Score=83.14 Aligned_cols=115 Identities=24% Similarity=0.248 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. .-|.+.. ..++.++|+ ..|.. +.+.
T Consensus 203 p~~~~~~~~l~~~~~~~~-~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~~~~~~~ 280 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEH-LKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPME-IDEEEYYLKPMNCPGHILIYKSR 280 (575)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCCcccchhhcccccc-cCCceEEEecCCCHHHHHHHhcc
Confidence 455789999999999999 68999999999997752 1232 1244421 235778886 33332 2221
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li 462 (883)
... ..+. |.|++|+|||+|.+.. .|..||+|.|+|+ |.+.+...+.+.+++
T Consensus 281 ~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i 337 (575)
T PRK12305 281 LRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVL 337 (575)
T ss_pred cCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHH
Confidence 111 1233 9999999999998853 4668999999997 555444444333333
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=66.46 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
..-+||||||+|..+..+++.-. + .+.++|+++.+++..++.+..+... +..++.|+.+-... ++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~---~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRN---ESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhcc---CCccEEEECCC
Confidence 55799999999999987776532 2 6789999999999988877755433 36777777654322 58888887652
Q ss_pred ccccCh-------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 213 LMFILD-------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 213 L~hl~d-------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
.---++ +-...++..+-.+|.|.|.+++...... .+.+....++.-
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------KPKEILKILEKK 184 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------CHHHHHHHHhhc
Confidence 111000 1245667777788899999999874322 355666777777
Q ss_pred cccccc
Q psy8372 274 NLKCVK 279 (883)
Q Consensus 274 Gf~vv~ 279 (883)
||....
T Consensus 185 g~~~~~ 190 (209)
T KOG3191|consen 185 GYGVRI 190 (209)
T ss_pred ccceeE
Confidence 776543
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00044 Score=84.44 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCc------cceeccCCCCceeeEecCHH--H---HHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGAR------EFVVPTHEPNKFYSLVQSPQ--Q---LKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~------~f~v~~~~~~~~~~L~~Spq--l---~kq~l 411 (883)
.-..++..|.+.+++.+ .+.||.||.||+|.... -+|.. -|.++ ..+..++|+.-.. + |+..+
T Consensus 272 ~g~~~~~~i~~~~~~~~-~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d--~~~~~~~LrP~~~~~~~~~~~~~~ 348 (639)
T PRK12444 272 KGQIIRNELEAFLREIQ-KEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSE--VDNKSFALKPMNCPGHMLMFKNKL 348 (639)
T ss_pred CHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeec--CCCcEEEEccCCCHHHHHHHhCcc
Confidence 34567788999999999 68999999999997752 12321 13222 2256677863222 2 22221
Q ss_pred Hc-cCCC-cEEEEeeceecCCCCC--C--CCcceecccccccCCCHHHHHHHHHHHHH---HHhccCCCCc
Q psy8372 412 MV-GSVD-RYFQIARCYRDESTRP--D--RQPEFTQLDIELSFTTRDDVMRLIEELLC---YCLNIPTRTF 473 (883)
Q Consensus 412 ~~-~~~~-rvf~I~~~FR~E~~~~--~--r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~~~~~~~f 473 (883)
.. ..+. |+|++++|||.|.+.. . |..||+|.|++ .|.+.+++.+.+++++. .+++.+.-||
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~ 418 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQIDYVYKTFGFEY 418 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 11 1222 9999999999999754 4 67899999999 57776665555444443 3444443344
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00064 Score=75.49 Aligned_cols=124 Identities=17% Similarity=0.052 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh--------CCCeEEEEeCCHHHHHHHHHHHhhcc--CCCc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--------HFDKIDLLEQSSKFIEQAKEEILKDC--DKLD 185 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--------g~~~V~gvD~S~~~le~A~~~~~~~~--~~~~ 185 (883)
.....++..+. ...++.+|||.+||+|.+...+... ....++|+|+++.++..|+.++.-.+ ....
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 34444555554 2245678999999999998877652 23379999999999999987764332 2222
Q ss_pred cEEEccCCCCCCCcCCCCccEEEEccccccc--Ch-----------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 186 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI--LD-----------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 186 ~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl--~d-----------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.....|....+.......||+|+++.-+--. .. ..-..++..+.+.|++||++.+..+
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3566665443322113689999997644322 00 0123588999999999999888775
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00057 Score=81.56 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=66.5
Q ss_pred eecCCccccchhhH-------HHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEec
Q psy8372 622 LILPKDLDSTNKKI-------TEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSW 694 (883)
Q Consensus 622 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 694 (883)
|++|+...++++++ ++|.++++. +|.+++.|+ ++ . ....++++++++|.+.+++++||+++|.+
T Consensus 302 I~vpg~~~lsrkei~pgrr~gdeL~e~aK~-~GakGL~~~--de---l---p~~~it~eev~~L~e~l~ak~GD~ll~vA 372 (620)
T TIGR00134 302 VLLRGFDGLVGVEIQPGRRLGTEFADYAKK-RGVGGIFHT--DE---L---PAYGITEEEVRGLRDAVGAEQGDAVVMVA 372 (620)
T ss_pred EEcCCCcccchhhhcccccchHHHHHHHHH-cCCCceEee--cc---c---ccCCCCHHHHHHHHHHhCCCCCCEEEEEc
Confidence 88998778999999 899999996 577788776 21 1 13347889999999999999999999999
Q ss_pred CCchhhHhHHHHHHH
Q psy8372 695 GKQEDVLSLLGMIRS 709 (883)
Q Consensus 695 ~~~~~~~~~lg~lr~ 709 (883)
++...+.++||++..
T Consensus 373 dk~~~v~~aL~~v~~ 387 (620)
T TIGR00134 373 HERVTVERALREVIE 387 (620)
T ss_pred CcHHHHHHHHHHHHh
Confidence 998899999999854
|
The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA. |
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00044 Score=81.19 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-----C-ccceeccCCC---CceeeEecCHH-----HHHH
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-----A-REFVVPTHEP---NKFYSLVQSPQ-----QLKQ 409 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-----a-~~f~v~~~~~---~~~~~L~~Spq-----l~kq 409 (883)
.+++..|.+.+++-+ .+.||.||.||+|.... .++ . ..|.+..... +..++|+...+ +|++
T Consensus 38 ~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 38 FKIWKNIQKILRNIL-DEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 456899999999999 67899999999997642 222 1 2255543321 36788873332 2333
Q ss_pred HHHc-cCCC-cEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHH---HHhc-cCCCCceee
Q psy8372 410 LLMV-GSVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLC---YCLN-IPTRTFSRI 476 (883)
Q Consensus 410 ~l~~-~~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~~-~~~~~f~ri 476 (883)
.+.. ..+. |+||+++|||+|...+ .|..||+|.|.+..|.+.++..+.++.++. .++. .+.-|+...
T Consensus 117 ~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~ 192 (472)
T TIGR00408 117 WVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVG 192 (472)
T ss_pred cccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 3211 1233 9999999999999864 355899999999999998887777666664 3444 444444433
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0009 Score=69.81 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=86.4
Q ss_pred EEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 138 VLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
|.||||-.|.+..+|+..+.. .++++|+++..++.|+++....+ ...+++..+|-.+..... +..|+|+...+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~--e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG--EDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG--G---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC--CCCCEEEEecCCH-
Confidence 689999999999999999876 79999999999999999998774 455677788754432222 2478888766533
Q ss_pred cChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 216 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 216 l~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.-...+|.+....++....|++.... ....+++++.+.||.++.+..
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILqP~~-----------------~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQPNT-----------------HAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEEESS------------------HHHHHHHHHHTTEEEEEEEE
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEeCCC-----------------ChHHHHHHHHHCCCEEEEeEE
Confidence 33667888887777766677776521 355889999999999986654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00052 Score=84.21 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe--cCHHH---HHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV--QSPQQ---LKQ 409 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~--~Spql---~kq 409 (883)
+-.-.+++..|.+.+|+.+ .++||.||.||.|.... ..|. .-|.++. .+..++|+ .-|.+ |++
T Consensus 317 lP~g~~i~~~l~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~--~~~~~~Lrp~~~~~~~~~~~~ 393 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQY-WERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI--EKQEFGLKPMNCPGHCLMFAH 393 (686)
T ss_pred echHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhccEEec--CCeeEEEcCCCcHHHHHHHhc
Confidence 3556789999999999999 68999999999997752 1221 1244432 25667886 33322 333
Q ss_pred HHHcc-CCC-cEEEEeeceecCCCC----CCCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 410 LLMVG-SVD-RYFQIARCYRDESTR----PDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 410 ~l~~~-~~~-rvf~I~~~FR~E~~~----~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
..... .+. |+|++++|||+|.+. -.|-.||+|.|.+. |...+++.+.+++++..+
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~ 454 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFL 454 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHH
Confidence 21111 223 999999999999884 34668999999998 777777777777776544
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=81.46 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-----C-ccceeccCC---CCceeeEe-cC----HHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-----A-REFVVPTHE---PNKFYSLV-QS----PQQ 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-----a-~~f~v~~~~---~~~~~~L~-~S----pql 406 (883)
-.-.+++..|.+.+++.| .+.||.||.||.|...+ .+| + ..|.+.... .+..++|+ +| -.+
T Consensus 41 P~g~~i~~~i~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~ 119 (477)
T PRK08661 41 PYGYAIWENIQKILDKLF-KETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPM 119 (477)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHH
Confidence 344678999999999999 68999999999997652 122 1 235554322 13568886 44 234
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCCCCC---CCcceecccccccCCCHHHHHHHHHHHHH---HHh-ccCCCCcee
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLC---YCL-NIPTRTFSR 475 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~~~~---r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~-~~~~~~f~r 475 (883)
|+..+.. ..+. |+||+++|||+|.. ++ |..||+|.|.+..+.+.++..+.+++++. .++ +.+.-|+..
T Consensus 120 ~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~ 196 (477)
T PRK08661 120 YKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVII 196 (477)
T ss_pred HHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 5554221 1233 99999999999998 54 66899999999999998888777776664 334 334444443
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00018 Score=69.99 Aligned_cols=47 Identities=49% Similarity=0.711 Sum_probs=41.7
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChh
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPE 343 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~ 343 (883)
.+++|+.++++++++++ .++|+.+++....+.++|++|||||||++.
T Consensus 88 ~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 88 TGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred CCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 45799999999999999 799999877666789999999999999864
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00039 Score=76.32 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC--CCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN--IKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~FDlVv 208 (883)
.++..+||.+||.|..+..++.... ..|+|+|.++.|++.|++++.. ..++.++..+..++...... .++|.|+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 4567999999999999999988764 3799999999999999988754 34556777776655321101 1577777
Q ss_pred Ec
Q psy8372 209 IQ 210 (883)
Q Consensus 209 s~ 210 (883)
+.
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 63
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=71.42 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++..-. .++.+|||||+|.|.+|..+++.+.. |+++++++.+++..++... ...+.+.+.+|+
T Consensus 14 ~d~~v~~kIv~~a~~-----~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~Da 85 (259)
T COG0030 14 IDKNVIDKIVEAANI-----SPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA--PYDNLTVINGDA 85 (259)
T ss_pred cCHHHHHHHHHhcCC-----CCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc--cccceEEEeCch
Confidence 344444445444422 34789999999999999988888765 9999999999999998875 335668899999
Q ss_pred CCCCCCcCCCCccEEEEcccccccCh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
......... .++.|+++-- .+++.
T Consensus 86 Lk~d~~~l~-~~~~vVaNlP-Y~Iss 109 (259)
T COG0030 86 LKFDFPSLA-QPYKVVANLP-YNISS 109 (259)
T ss_pred hcCcchhhc-CCCEEEEcCC-CcccH
Confidence 987765311 5788888654 45543
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00069 Score=74.87 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C------CccceeccCCCCceeeEecCHHHHHHHHHcc-
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G------AREFVVPTHEPNKFYSLVQSPQQLKQLLMVG- 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g------a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~- 414 (883)
-...+++.+|.+.+++.+ .+.||.||.||.|.... -. | ...|.+. +..++|....+...-.++..
T Consensus 49 p~g~~l~~~l~~~~~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~----~~~~~L~pt~e~~~~~l~~~~ 123 (297)
T cd00770 49 GDGALLERALINFALDFL-TKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE----GEDLYLIATAEVPLAALHRDE 123 (297)
T ss_pred CHHHHHHHHHHHHHHHHH-HHCCCEEEECcccccHHHHhhcCcCccChhcccEec----CCCEEEeecCCHHHHHHHhcc
Confidence 446789999999999999 68999999999998752 11 2 1224443 25577863333221111211
Q ss_pred -----CCC-cEEEEeeceecCCCC-------CCCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 415 -----SVD-RYFQIARCYRDESTR-------PDRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 415 -----~~~-rvf~I~~~FR~E~~~-------~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
.+. |+||+++|||+|... --|..||+|.|.+. |..-++..+..++++..
T Consensus 124 ~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~ 185 (297)
T cd00770 124 ILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISN 185 (297)
T ss_pred cCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHH
Confidence 122 999999999999762 12458999999974 65556666666665544
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0024 Score=78.77 Aligned_cols=110 Identities=12% Similarity=-0.023 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-------------------------------------------CCeEEEEeCCHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-------------------------------------------FDKIDLLEQSSKF 169 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-------------------------------------------~~~V~gvD~S~~~ 169 (883)
.++..++|.+||+|.+.+.++... ...++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 356799999999999998776421 0158999999999
Q ss_pred HHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccc-cC-hHHHHHHHHHHHHHhc---cCcEEEEEe
Q psy8372 170 IEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF-IL-DEDIIKFLNLCKQILN---KNGIIIIKD 242 (883)
Q Consensus 170 le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h-l~-ded~~~~l~~~~r~LK---PGG~lvi~~ 242 (883)
++.|++++...+. ..+.+.+.|+.++......++||+|+++.-.-. +. ..+...+...+.+.|| +|+.+++.+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999999987754 346888999988765432357999999865422 21 1334444444444444 898888776
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=72.56 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=86.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDV 206 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~---~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDl 206 (883)
...++.+|||..++.|.=+.+++....+ .|+++|.|+.=+...++++...+..++..+..|...+...... ++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 3467899999999999988778877543 4699999999999999999988777767777777654432212 35999
Q ss_pred EEEc------ccccccC-------hH-------HHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 207 IWIQ------WVLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 207 Vvs~------~vL~hl~-------de-------d~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
|+.- .+++.=| .+ -..++|..+.++|||||.|+-++++..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9952 2331111 11 245789999999999999999997543
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=70.31 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...++..|||||.|||.++..+++.+.. |+++++++.|+....++..... ....+++.+|+...+.+ .||++++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P----~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP----RFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc----ccceeec
Confidence 3467789999999999999999998776 9999999999999999987652 34457788888776543 5999998
Q ss_pred ccccc
Q psy8372 210 QWVLM 214 (883)
Q Consensus 210 ~~vL~ 214 (883)
+--..
T Consensus 130 NlPyq 134 (315)
T KOG0820|consen 130 NLPYQ 134 (315)
T ss_pred cCCcc
Confidence 75443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.003 Score=61.96 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHH-----hCCCeEEEEeCCHHHHHHHHHHHhhcc--C-CCccEEE
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLA-----KHFDKIDLLEQSSKFIEQAKEEILKDC--D-KLDKCYN 189 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~-----~g~~~V~gvD~S~~~le~A~~~~~~~~--~-~~~~~~~ 189 (883)
...++..+........+..+|+|+|||.|+++..++. .....|+|||.++..++.|.++..... . ....+..
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQ 88 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhc
Confidence 3344555433212235677999999999999987776 322279999999999999998877654 1 3345555
Q ss_pred ccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 190 ~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+..+... ....++++.-.+--.+.+ .+++.+.+ |+-.+++..++
T Consensus 89 ~~~~~~~~---~~~~~~~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 89 GDIADESS---SDPPDILVGLHACGDLSD----RALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred cchhhhcc---cCCCeEEEEeecccchHH----HHHHHHHH---cCCCEEEEcCC
Confidence 54443322 235677776554444433 45554444 66555554443
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=74.48 Aligned_cols=109 Identities=21% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCC--C--CCCc----cceeccCCCCceeeEe--cCHHHHHHHHH--ccCCCcE
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRT--P--GGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLM--VGSVDRY 419 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~--~--~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~--~~~~~rv 419 (883)
..|.+.+++.| ..+||.||+||++.... . .|.. .|.+... .|..+.|+ -.+++....+. ...-.|+
T Consensus 8 ~~i~~~i~~~f-~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASF-EAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHH-HHcCCEEeeCCccccHHHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 47888899999 68999999999996642 1 1221 2444322 36677786 33334443221 1222399
Q ss_pred EEEeeceecCCCCCCCCcceecccccccCC-C----HHHHHHHHHHHHHHH
Q psy8372 420 FQIARCYRDESTRPDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCYC 465 (883)
Q Consensus 420 f~I~~~FR~E~~~~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~i 465 (883)
|++++|||.| ..|..||+|+++|+.+. + ..|++.++-+.+..+
T Consensus 86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 9999999999 45668999999999884 3 457888877777654
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=68.78 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++..+||+|+.||.++..++..|+.+|+|+|.....+..--+. ..+.+.....++..+.+....+..|+|+|--+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHHcccCCCeEEEEee
Confidence 57889999999999999999999999999999998776654332 22333444556665555555567899999766
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcccccCCcccccc-------cchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~~~~~~~~~~~~-------s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+-. +..+|..+..+++|+|.++.-.-. .+-...... ..+..+ -.....+++.+.||.+.....
T Consensus 154 FIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~--kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 154 FIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG--KKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred hhh-----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC--cCceecCcchHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 533 567999999999999987765421 110001111 111122 233666777777887765443
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=80.43 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc--------cceeccCCCCceeeEecCHH-----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR--------EFVVPTHEPNKFYSLVQSPQ-----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~--------~f~v~~~~~~~~~~L~~Spq-----l~kq~ 410 (883)
-.-.+++.+|.+.+++.. .++||.||.||.|.... ..+++ -|.+... .+..|.|+.+.. +|++.
T Consensus 244 p~G~~l~~~L~~~~~~~~-~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~-~~~~y~l~p~~~p~~~~~~~~~ 321 (614)
T PLN02837 244 PKGAIVRHIIEDSWKKMH-FEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDI-EDELYQLRPMNCPYHILVYKRK 321 (614)
T ss_pred chHHHHHHHHHHHHHHHH-HHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCC-CCceEEECCCCcHHHHHHHhCc
Confidence 456789999999999999 57899999999997752 22222 2433211 145566764433 23332
Q ss_pred HHcc--CCC-cEEEEeeceecCCCCCC----CCcceecccccccCCCHHHHHHHHHHHHHHH---hccCCCCc
Q psy8372 411 LMVG--SVD-RYFQIARCYRDESTRPD----RQPEFTQLDIELSFTTRDDVMRLIEELLCYC---LNIPTRTF 473 (883)
Q Consensus 411 l~~~--~~~-rvf~I~~~FR~E~~~~~----r~~EFt~le~e~~~~~~~dvm~~~E~li~~i---~~~~~~~f 473 (883)
+ .+ .+. |++|+++|||+|.+... |-.||+|.|... |.+.+++.+.+++++..+ +..+.-|+
T Consensus 322 ~-~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~lg~~~ 392 (614)
T PLN02837 322 L-HSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQFGFSK 392 (614)
T ss_pred c-CChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 1 11 122 89999999999987533 558999999996 988888777777776543 33344444
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0043 Score=64.76 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=86.2
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~ 195 (883)
-.|+..++.. -..+++||||.-||+-+..++..-+. +|+++|+++...+.+.+..+..+ ...++++++.+.+.
T Consensus 62 g~fl~~li~~----~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 62 GQFLQMLIRL----LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHH----hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 3445555432 25679999999999988777665443 79999999999999987766553 34567888776543
Q ss_pred C----CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 196 K----PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 196 ~----~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
. .....++||.++.- |.. +.......++.+++|+||.|++....+.+
T Consensus 138 Ld~l~~~~~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHHHHhcCCCCceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 2 11124789999763 333 34668999999999999999997755555
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00044 Score=67.84 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
-.+.+||++|.|--.++..+.+...+ .|...|-++..++..++....+ ....+..+..+...-........||.|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 35679999999976666545444333 7999999999988887754433 111111121111111111223589999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+|..++..= +....++..+.+.|+|.|.-++..+-.. .+.+.+.+.....||.+..++.-
T Consensus 108 laADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg--------------~sL~kF~de~~~~gf~v~l~eny 167 (201)
T KOG3201|consen 108 LAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG--------------QSLQKFLDEVGTVGFTVCLEENY 167 (201)
T ss_pred EeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc--------------chHHHHHHHHHhceeEEEecccH
Confidence 998887543 4567888999999999999777765322 25778888899999988766554
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=77.66 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC---------CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF---------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLN 201 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~---------~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 201 (883)
...+|||.|||+|.++..++.... ..++|+|+++.++..|+.++.............|..... .....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999987765431 268999999999999998876543111233333322111 11112
Q ss_pred CCccEEEEccccc
Q psy8372 202 IKYDVIWIQWVLM 214 (883)
Q Consensus 202 ~~FDlVvs~~vL~ 214 (883)
+.||+|+++.-.-
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999977543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0018 Score=65.71 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
-.+.+|||+|+|+|..+...+..|...|+..|+.+..++..+-+...++. .+.+...|... . +..||+|+...+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~LagDl 151 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLAGDL 151 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEeece
Confidence 46889999999999999988888888999999998888888777776543 23566666654 2 247999999988
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+..-+. ...++.-..++...|-.+++.++.
T Consensus 152 fy~~~~--a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 152 FYNHTE--ADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ecCchH--HHHHHHHHHHHHhCCCEEEEeCCC
Confidence 764422 456777444444445556666643
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=69.22 Aligned_cols=120 Identities=15% Similarity=0.047 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhc-------c--CC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKD-------C--DK 183 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~-------~--~~ 183 (883)
.......+++.+. ..++...+|+|||.|.....++. .++..++||++.+...+.|+...... + ..
T Consensus 27 ~~~~~~~il~~~~-----l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 27 SPEFVSKILDELN-----LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp HHHHHHHHHHHTT-------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred CHHHHHHHHHHhC-----CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445555555542 25678999999999998765543 35567999999999988887643321 1 22
Q ss_pred CccEEEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 184 LDKCYNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 184 ~~~~~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+++..+|+.+..... .-...|+|++++... . +++...|.+....||+|-+++..
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 3355666665432110 002469999988643 2 45667778888889988776643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00065 Score=68.13 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=81.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
...+.|+|+|+|.++. +++....+|++++.+|.-...|.+++.-.+..+++.+.+|+.+..+. ..|+|+|-+.=.
T Consensus 33 ~d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe----~ADvvicEmlDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE----NADVVICEMLDT 107 (252)
T ss_pred hhceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc----ccceeHHHHhhH
Confidence 3579999999999997 55555778999999999999999998766778889999999988763 579999865433
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
-+-++.....+..+...||-.|.++=.
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccccH
Confidence 333344567888888899988887654
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0018 Score=78.04 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC-----CCccceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG-----GAREFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~-----ga~~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.+++..|.+.+++.+ .+.||.+|.||.+.... .+ +.+-|.+... +..++|+ ..|.+ |++.
T Consensus 224 P~G~~i~~~L~~~~~~~~-~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~--~e~l~Lrp~~c~~~~~~~~~~ 300 (613)
T PRK03991 224 PKGRLIRDLLEDYVYNLV-VELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD--KKDLMLRFAACFGQFLMLKDM 300 (613)
T ss_pred cHHHHHHHHHHHHHHHHH-HHCCCEEEECCeecChhHHhhcccccccchhceEecCC--CceEEEecCCCHHHHHHHhCC
Confidence 356889999999999999 58999999999995431 11 2233555322 4567776 34433 3332
Q ss_pred HHc-cCCC-cEEEEee-ceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHHHHH---hccCCCCcee
Q psy8372 411 LMV-GSVD-RYFQIAR-CYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCYC---LNIPTRTFSR 475 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~-~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i---~~~~~~~f~r 475 (883)
... ..+. |+||+++ |||+|.+.. .|-.||||.|.+..-.+.+++++.+++++..+ +..+.-||..
T Consensus 301 ~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~ 375 (613)
T PRK03991 301 TISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEV 375 (613)
T ss_pred cCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 110 1122 8999999 999998753 35689999999997666888888888877654 3445555554
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0005 Score=68.85 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCC-CccEEEEcc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNI-KYDVIWIQW 211 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~-~FDlVvs~~ 211 (883)
.|+|+.||.|..+..++.. +.+|+++|+++..++.|+.++...+ ..++.++++|+.+........ .||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999988776 5569999999999999999998875 557899999988764332111 289999755
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00084 Score=78.22 Aligned_cols=130 Identities=12% Similarity=0.194 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCccce---e--ccCCCCceeeEe-cCHH----HHHHHHH-cc
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAREFV---V--PTHEPNKFYSLV-QSPQ----QLKQLLM-VG 414 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~~f~---v--~~~~~~~~~~L~-~Spq----l~kq~l~-~~ 414 (883)
..++...+++.+++++ .++||.||.||.|.... -.|++.++ - .|.-.+..+||. +|-. +|....+ ..
T Consensus 232 ~a~Le~ALi~f~ld~~-~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~ed~~Li~TaE~Pl~~~~~~~ils~~ 310 (502)
T PLN02320 232 AVLLEMALVNWTLSEV-MKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHHHhcCCCcccccCceeEECCCceEEeecccccccccccccccCHh
Confidence 4457788999999999 57899999999998753 23322110 0 011113456773 2211 2222111 12
Q ss_pred CCC-cEEEEeeceecCCCCCC-------CCcceecccccccCCCHHHHHHHHHHHHHHH---hccCCCCceeeeh
Q psy8372 415 SVD-RYFQIARCYRDESTRPD-------RQPEFTQLDIELSFTTRDDVMRLIEELLCYC---LNIPTRTFSRISY 478 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~~~-------r~~EFt~le~e~~~~~~~dvm~~~E~li~~i---~~~~~~~f~rity 478 (883)
.+. |+..+++|||.|.+... |.-+|+++|.-. |...+++.+..|+|+..+ ++.+.-||..+..
T Consensus 311 dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l 384 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEEDLFTSLGLHFKTLDM 384 (502)
T ss_pred hCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 233 99999999999987332 457999999965 778888888888887654 4456666665543
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=66.01 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++|||.||-|-|.....+.+..+.+-+-++..+..++..+........+ +-.+.+-.++..+.-+++.||.|+-..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~n-Viil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKEN-VIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccc-eEEEecchHhhhccccccCcceeEeech
Confidence 578899999999999887666655556678899999999998876644333 3345555554444333568999988655
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-+|. +++..+.+.+.|+|||+|++-.-.
T Consensus 179 ~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 4666 669999999999999999876654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=70.83 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++++||+||++|.++..++.+|. .|++||.++ |-.. +. ....+..+..|...+.+. .+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~----L~--~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQS----LM--DTGQVEHLRADGFKFRPP--RKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHh----hh--CCCCEEEEeccCcccCCC--CCCCCEEEEecc
Confidence 5788999999999999999999887 699999554 2111 11 345567777777766553 368999999876
Q ss_pred ccccChHHHHHHHHHHHHHhccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG 235 (883)
+.+....+-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 33668888899999766
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=76.70 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc--------cceeccCCCCceeeE-ecC--HH--HHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR--------EFVVPTHEPNKFYSL-VQS--PQ--QLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~--------~f~v~~~~~~~~~~L-~~S--pq--l~kq~l 411 (883)
...+++..|++.+++++ .++||.||.||.|.... -.+++ -|.+.. .+...|| ++| |. +|....
T Consensus 172 ~ga~L~~AL~~y~ld~~-~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~--~~~~~yLi~TaE~~l~~~h~~~~ 248 (448)
T PLN02678 172 AGVLLNQALINFGLAFL-RKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTG--EGDDKYLIATSEQPLCAYHRGDW 248 (448)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCEEEECcccccHHHHhhcCCcccchhcCceecC--CCCceeeecccccccChHHhccc
Confidence 45889999999999999 57899999999997752 22222 233321 1223344 433 21 232211
Q ss_pred H-ccCCC-cEEEEeeceecCCCC----C---CCCcceecccccccCCCHHH--HHHHHHHHHHH---HhccCCCCceeee
Q psy8372 412 M-VGSVD-RYFQIARCYRDESTR----P---DRQPEFTQLDIELSFTTRDD--VMRLIEELLCY---CLNIPTRTFSRIS 477 (883)
Q Consensus 412 ~-~~~~~-rvf~I~~~FR~E~~~----~---~r~~EFt~le~e~~~~~~~d--vm~~~E~li~~---i~~~~~~~f~rit 477 (883)
+ -..+. |++++++|||.|.+. + -|.-+|+++|. ..+...++ ..+..|+|+.. +++.+.-||+.+.
T Consensus 249 ~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~-f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~ 327 (448)
T PLN02678 249 IDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQ-FCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVS 327 (448)
T ss_pred CCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEE-EEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 1 12233 999999999999873 2 23379999999 44655454 66666666653 4555666777653
|
|
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00041 Score=61.74 Aligned_cols=34 Identities=32% Similarity=0.628 Sum_probs=30.6
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|+|+|||++.|+ ..|++|||.+|.+|+++..+.
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~iQ~v~~~~~ 37 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKL 37 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeEEEEEEcCCc
Confidence 4899999999999 799999999999999986543
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0046 Score=66.92 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=97.0
Q ss_pred HHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH---hhcc----------------
Q psy8372 121 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI---LKDC---------------- 181 (883)
Q Consensus 121 lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~---~~~~---------------- 181 (883)
.|..+...........+||--|||.|+++..++..|+. +-|-+.|--|+-...=.+ ...+
T Consensus 137 ~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~ 215 (369)
T KOG2798|consen 137 ELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLS 215 (369)
T ss_pred HHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccc
Confidence 34444333333334678999999999999999999987 888888887764332111 0000
Q ss_pred -CCCc------------------cE--EEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 182 -DKLD------------------KC--YNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 182 -~~~~------------------~~--~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
...+ .| ..+|+.+.-... ..+.||+|+..+-+.... +....+..+..+|||||+.+
T Consensus 216 ~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 216 RDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEE
Confidence 0000 00 112322221111 124799999887666553 48899999999999999988
Q ss_pred EEecccCCCccccc-CCcccccccchhhhhhhhhccccccccc
Q psy8372 240 IKDNVASGVKNEYD-DEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 240 i~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
-..+.......... ....+...+.+++..+.+.-||++++++
T Consensus 294 NlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 294 NLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred eccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 76654221111011 1122445577788999999999998877
|
|
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0005 Score=63.69 Aligned_cols=33 Identities=39% Similarity=0.728 Sum_probs=30.0
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~ 56 (883)
+|+++|||++.|+ ..|++|||.+|.+|+++.++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~iQ~v~~~~ 36 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKD 36 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCeeEEEEEeCC
Confidence 4899999999999 68999999999999998654
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0033 Score=72.26 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~ 197 (883)
..+.+-..+......+.+..+||+.||||.++. .++++...|+||++++.+++-|++++..++..+.+|+++-+++..+
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceeh-hhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 344444444444455677899999999999998 4566677899999999999999999999988999999996666543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0064 Score=68.39 Aligned_cols=108 Identities=18% Similarity=0.047 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC----------------------------------------eEEEEeCCHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD----------------------------------------KIDLLEQSSKFIEQ 172 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~----------------------------------------~V~gvD~S~~~le~ 172 (883)
.++..++|-=||+|.+++..+..+.+ .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45578999999999999988766531 27799999999999
Q ss_pred HHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccccc-ccChH-----HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 173 AKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FILDE-----DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 173 A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~de-----d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+.|+...+ ...++|.++|+.++.... +.+|+|+|+.--- -+.++ -+..+.+.+++.++--+..+++.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 999999874 456799999999987663 5899999987321 12111 13455556667777667777765
|
|
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00061 Score=61.01 Aligned_cols=33 Identities=36% Similarity=0.594 Sum_probs=28.9
Q ss_pred EEEEEEeeeeech----hhhhhhccccC-cEEEEecCC
Q psy8372 24 TVTLCGWLQNQRV----DMFALLRDAYG-QVQVIVPNH 56 (883)
Q Consensus 24 ~v~l~gWv~~~R~----~~f~~lRD~~G-~~qvv~~~~ 56 (883)
+|+|+|||++.|+ ..|++|||++| .+||++.++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~ 38 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAK 38 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCC
Confidence 4899999999997 57999999999 599998653
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0006 Score=63.03 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEEEEEeeeeech----hhhhhhccccCcEEEEecCC
Q psy8372 24 TVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 24 ~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~ 56 (883)
+|+++|||+++|. ..|++|||.+|.+||++.+.
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~ 37 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAAS 37 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCC
Confidence 4899999999997 57999999999999999754
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0046 Score=64.02 Aligned_cols=104 Identities=16% Similarity=-0.050 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC------cCCC
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------DLNI 202 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~ 202 (883)
...++++|+|+||.+|.++..++..... .|+|+|+.|-- ....+.++++|+.+-... ....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 3467899999999999999877666444 49999986532 233468899998765421 1123
Q ss_pred CccEEEEcccc--------cccChHH-HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 203 KYDVIWIQWVL--------MFILDED-IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 203 ~FDlVvs~~vL--------~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.+|+|+|-++- +|..-.. ...++.-+..+|+|||.+++..+-.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 57999975543 3432222 3355666677999999999998543
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00076 Score=79.92 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=43.4
Q ss_pred cccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCC
Q psy8372 10 SHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 10 ~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~ 56 (883)
...|++|+.++.|++|+|+|||++.|. .+|++|||..|.+|+++...
T Consensus 69 ~~~i~~l~~~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~~iQ~v~~~~ 118 (530)
T PLN02850 69 WTDVSDLGEELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGFTVQCVVFVS 118 (530)
T ss_pred EeEhhhcchhhCCCEEEEEEEEEEEccCCCeEEEEEEeCCcCEEEEEECC
Confidence 377999999999999999999999999 79999999999999998654
|
|
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00089 Score=59.26 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=30.3
Q ss_pred EEEEEEeeeeech---hhhhhhccccCc--EEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQ--VQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~--~qvv~~~~~ 57 (883)
+|+++|||++.|. ..|++|||.+|. +||++.++.
T Consensus 1 ~v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~ 39 (82)
T cd04318 1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKEL 39 (82)
T ss_pred CEEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcc
Confidence 4899999999998 789999999997 999997643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00089 Score=78.15 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=40.3
Q ss_pred ccccccc-CCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCC
Q psy8372 10 SHTCGAL-RLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 10 ~~~~~~~-~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~ 56 (883)
+.+|.++ +.+++|++|+|+|||++.|. ..|++|||.+|.+|+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~iq~~~~~~ 53 (450)
T PRK03932 3 RVSIKDILKGKYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKD 53 (450)
T ss_pred cEEHHHhcccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCcEEEEEEcC
Confidence 3456676 57899999999999999999 68999999999999988543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0036 Score=60.89 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=46.5
Q ss_pred eEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
.+||||||.|..+..++..+.. +|+++|+++.+.+.++++...+...++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999988877765 799999999999999999876544445666655543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00078 Score=60.05 Aligned_cols=34 Identities=44% Similarity=0.723 Sum_probs=30.9
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|+++|||++.|+ ..|+.|||.+|.+|+++..+.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~~iQ~v~~~~~ 37 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEE 37 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCeeEEEEEECCc
Confidence 4899999999999 699999999999999997654
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00091 Score=79.45 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=35.1
Q ss_pred CcCCCCEEEEEEeeeeechh-----hhhhhcccc--CcEEEEecC
Q psy8372 18 LSDVDKTVTLCGWLQNQRVD-----MFALLRDAY--GQVQVIVPN 55 (883)
Q Consensus 18 ~~~~g~~v~l~gWv~~~R~~-----~f~~lRD~~--G~~qvv~~~ 55 (883)
.+++|++|+|+|||++.|+. +|+.|||++ |.+|||+.+
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~ 90 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDS 90 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcC
Confidence 78999999999999999992 799999999 999999965
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0049 Score=67.64 Aligned_cols=113 Identities=19% Similarity=0.141 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+++|.|.=+..++.... ..+++.|+++.-+...+.+....+..++.....|.....+......||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 5788999999999998888887754 38999999999999999999888777777777776655332222369999952
Q ss_pred c------cccccCh--------------HHHHHHHHHHHHHh----ccCcEEEEEeccc
Q psy8372 211 W------VLMFILD--------------EDIIKFLNLCKQIL----NKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d--------------ed~~~~l~~~~r~L----KPGG~lvi~~~~~ 245 (883)
. ++..-++ .-..++|..+.+.+ ||||+++-++.+-
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 2 2222211 02457899999999 9999999998653
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0011 Score=62.01 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=30.5
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|+|+|||++.|. .+|++|||.+|.+|+++....
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~ 37 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDD 37 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCC
Confidence 5899999999999 799999999999999986543
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >KOG2784|consensus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.002 Score=70.27 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=45.9
Q ss_pred ccCCC--cEEEEeeceecCCCCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 413 VGSVD--RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 413 ~~~~~--rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
-.++. |+|.|-++||||..+++|..||.|+|--++..+ +-++|.++++++..+
T Consensus 328 k~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 328 KKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred hCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 45554 999999999999999999999999998887764 899999999887654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.019 Score=62.28 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccE
Q psy8372 108 SSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187 (883)
Q Consensus 108 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~ 187 (883)
++..-.+......+++.+.. .++..|||+|+|+|.++..++..+ .+|+++|+++.+++..+++.. ...+++.
T Consensus 9 gQnFL~~~~~~~~Iv~~~~~-----~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~--~~~~~~v 80 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALDL-----SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA--SNPNVEV 80 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHTC-----GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT--TCSSEEE
T ss_pred CcCeeCCHHHHHHHHHhcCC-----CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh--hccccee
Confidence 33333466667777777732 367899999999999999998888 679999999999999998776 3456788
Q ss_pred EEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhcc
Q psy8372 188 YNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK 234 (883)
Q Consensus 188 ~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKP 234 (883)
+..|+.++.... ....-..|+++-.. ++. ..++.++...-+.
T Consensus 81 i~~D~l~~~~~~~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 81 INGDFLKWDLYDLLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp EES-TTTSCGGGHCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred eecchhccccHHhhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 999998876432 11244566665443 442 2565666553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.02 Score=61.08 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+|.+||+-|.|+|.++.+++..-.. +++-.|.-..-.+.|++.++... ..++++..-|+...-+......+|.|+.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 68999999999999999877765332 89999999999999999888773 4566788888766544332467898877
Q ss_pred cccccccChHHHHHHHHHHHHHhccCc-EEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNG-IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG-~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
.. |. +..++..++.+||.+| +++.-.++-+ ..+.-.+++..+||..+
T Consensus 184 Dl-----Pa--Pw~AiPha~~~lk~~g~r~csFSPCIE---------------Qvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 184 DL-----PA--PWEAIPHAAKILKDEGGRLCSFSPCIE---------------QVQRTCEALRSLGFIEI 231 (314)
T ss_pred cC-----CC--hhhhhhhhHHHhhhcCceEEeccHHHH---------------HHHHHHHHHHhCCCceE
Confidence 43 33 5567788888999877 5554443322 12234566777777654
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0017 Score=77.10 Aligned_cols=47 Identities=21% Similarity=0.421 Sum_probs=41.3
Q ss_pred ccccccccC------CcCCCCEEEEEEeeeeech---hhhhhhccccCc--EEEEecC
Q psy8372 9 RSHTCGALR------LSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQ--VQVIVPN 55 (883)
Q Consensus 9 r~~~~~~~~------~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~--~qvv~~~ 55 (883)
++++|.++. .+++|++|+|+|||.+.|. ..|++|||++|. +||++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~ 145 (565)
T PLN02603 88 KKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTP 145 (565)
T ss_pred CceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEEC
Confidence 667888887 3788999999999999999 689999999986 9999854
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=63.52 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC---CCCc----cceeccCCCCceeeEe--cCHHHHHHHHHc-c
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP---GGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMV-G 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~---~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~-~ 414 (883)
+.-+..+.+|.+.+++.| .++||.||.||++....- .+.. .+..-....|+...|+ -.||+.+-...- .
T Consensus 4 ~~~~~~~~~ie~~l~~~f-~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 4 SEQLIALKESETAFLKYF-NKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 445667888999999999 689999999999965421 1211 1222222347778887 555666533211 2
Q ss_pred CCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 415 SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 415 ~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
+..|.|++|++||.+. +|+|+.+|+.+.+.+...
T Consensus 83 ~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~ 116 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQ 116 (272)
T ss_pred CCceEEEeccEeccCC-------CcceeceEEECCCchhHH
Confidence 4459999999999874 489999999885533333
|
|
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00095 Score=73.39 Aligned_cols=37 Identities=27% Similarity=0.595 Sum_probs=34.7
Q ss_pred cCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecC
Q psy8372 19 SDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 19 ~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
++.|+.|.+.|||++.|. ++|+.|||++|++|||...
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gflqCVl~~ 159 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGFLQCVLSD 159 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCceEEEEEcc
Confidence 689999999999999998 8999999999999999865
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.04 Score=57.41 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+.++.||||-.|++..++...+.. .+++.|+++..++.|.+++..... ..++...+|. +.....++.+|+|+...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCccCCcCEEEEeC
Confidence 4667999999999999999988766 899999999999999999887633 3334444443 22333345799998766
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+--.+ ...+|.+-...|+.==++++.-.. ....++.++...+|.++.+..
T Consensus 94 MGG~l----I~~ILee~~~~l~~~~rlILQPn~-----------------~~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 94 MGGTL----IREILEEGKEKLKGVERLILQPNI-----------------HTYELREWLSANSYEIKAETI 143 (226)
T ss_pred CcHHH----HHHHHHHhhhhhcCcceEEECCCC-----------------CHHHHHHHHHhCCceeeeeee
Confidence 53332 667888888777643355555421 245889999999999886654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.034 Score=58.17 Aligned_cols=108 Identities=16% Similarity=0.009 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVI 207 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlV 207 (883)
+..++.+||-+|+++|....++..--. . .|++|+.|+......-..+... +++-.+-.|+.....- ..-+..|+|
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEE
Confidence 446889999999999999888876522 2 7999999996655554433322 3444566676543211 112589999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++.-+ .+++..-++.++...||+||.++++.-.
T Consensus 148 ~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 148 FQDVA----QPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp EEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EecCC----ChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 98643 1245677888999999999999998643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=64.10 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHh--hc-----cCCCccEEEccCCCCCCCcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEIL--KD-----CDKLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~--~~-----~~~~~~~~~~d~~~~~~~~~~~~F 204 (883)
+.-.+||-+|.|.|.-+..+++. +..+++-||++|.|++.++.+.. .. .+.+++.+..|+.++.... .+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-cccc
Confidence 34568999999999999888775 35589999999999999984322 11 3456677888888776544 3589
Q ss_pred cEEEEcc------cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 205 DVIWIQW------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~------vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|.|+... ++..+- -..+-.-+++.|+++|.+++...
T Consensus 367 D~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecC
Confidence 9998632 222221 24677888999999999999763
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.027 Score=57.29 Aligned_cols=148 Identities=12% Similarity=0.019 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHH----------HHHHHHHHHhhccCCCccEEEccCCCCCCCc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSK----------FIEQAKEEILKDCDKLDKCYNVGIQDFKPED 199 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~----------~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 199 (883)
.+++++|+|+=.|.|.++.-+... ++. .|+++-+.+. +-..+++. ...+.+.+......+.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----~~aN~e~~~~~~~A~~~-- 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----VYANVEVIGKPLVALGA-- 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----hhhhhhhhCCcccccCC--
Confidence 468999999999999999744332 222 5666533322 11222221 11222333333333332
Q ss_pred CCCCccEEEEccccccc-----ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 200 LNIKYDVIWIQWVLMFI-----LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl-----~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.+..|+++....-|.+ +......+.+.+++.|||||.+++.+........ .......++.+.....+..+.+|
T Consensus 120 -pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~dt~~~~ri~~a~V~a~veaaG 197 (238)
T COG4798 120 -PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LSDTITLHRIDPAVVIAEVEAAG 197 (238)
T ss_pred -CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hhhhhhhcccChHHHHHHHHhhc
Confidence 2356666653332222 2234678999999999999999999865432211 11222334456778888999999
Q ss_pred cccccccCCCCCc
Q psy8372 275 LKCVKSEKGEFSP 287 (883)
Q Consensus 275 f~vv~~~~~~~~P 287 (883)
|+...+....-.|
T Consensus 198 Fkl~aeS~ilaNp 210 (238)
T COG4798 198 FKLEAESEILANP 210 (238)
T ss_pred ceeeeeehhhcCC
Confidence 9987655444333
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0022 Score=74.80 Aligned_cols=38 Identities=29% Similarity=0.569 Sum_probs=35.0
Q ss_pred cCCCCEEEEEEeeeeech---hhhhhhcccc--CcEEEEecCC
Q psy8372 19 SDVDKTVTLCGWLQNQRV---DMFALLRDAY--GQVQVIVPNH 56 (883)
Q Consensus 19 ~~~g~~v~l~gWv~~~R~---~~f~~lRD~~--G~~qvv~~~~ 56 (883)
+++|++|+|+|||++.|. .+|++|||.+ |.+||++.++
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~ 55 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGE 55 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCC
Confidence 688999999999999999 7899999999 9999998654
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0019 Score=76.21 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=40.7
Q ss_pred ccccccccCCc----------CCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 9 RSHTCGALRLS----------DVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 9 r~~~~~~~~~~----------~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
++|++.++... ..|++|+|+|||.+.|. .+|++|||.+|.+||++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~ 103 (505)
T PRK12445 42 RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDS 103 (505)
T ss_pred CccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCccEEEEEECCc
Confidence 57777666432 34889999999999999 799999999999999997654
|
|
| >KOG1936|consensus | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.015 Score=65.27 Aligned_cols=115 Identities=19% Similarity=0.340 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-C---CCCCccceeccC---CCCceeeEe---cCHHHHHHHHHccCC
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-T---PGGAREFVVPTH---EPNKFYSLV---QSPQQLKQLLMVGSV 416 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-~---~~ga~~f~v~~~---~~~~~~~L~---~Spql~kq~l~~~~~ 416 (883)
-..+|..|.+.+++-| ..+|..+|.||++.-- + .-|... +..|. ..|+-..|+ +-| |..-++|- ..
T Consensus 73 qm~lRe~if~~i~~vF-krhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVP-fARylAmN-ki 148 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVF-KRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVP-FARYLAMN-KI 148 (518)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccH-HHHHHHHc-cc
Confidence 3568999999999999 6899999999998431 1 112222 22232 335656665 555 55554443 32
Q ss_pred C--cEEEEeeceecCCC--CCCCCcceecccccccC-CC----HHHHHHHHHHHHHHH
Q psy8372 417 D--RYFQIARCYRDEST--RPDRQPEFTQLDIELSF-TT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 417 ~--rvf~I~~~FR~E~~--~~~r~~EFt~le~e~~~-~~----~~dvm~~~E~li~~i 465 (883)
. +.|+||++||-+.. ...|..||+|+|+-+++ .+ -.|++..+-+++..+
T Consensus 149 ~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 149 TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL 206 (518)
T ss_pred ccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc
Confidence 2 67999999999877 56677999999999998 33 567777777776654
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0015 Score=63.86 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc------------CCcccccccchhhhh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD------------DEDSSVVRSLPQFCL 268 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~ 268 (883)
+++.|+|++..+++|+.-++...+++++++.|||||+|-++.+...-....+. .....+..+......
T Consensus 45 dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~m~n 124 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRMMFN 124 (185)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHH
Confidence 37999999999999999888999999999999999999999876443322221 112223335667778
Q ss_pred hhhhcccccccc
Q psy8372 269 LFSKANLKCVKS 280 (883)
Q Consensus 269 l~~~aGf~vv~~ 280 (883)
.+.++||.+-.-
T Consensus 125 ~~m~~~~~~kl~ 136 (185)
T COG4627 125 GFMDAGFVVKLL 136 (185)
T ss_pred HHHhhhheehhh
Confidence 888999876543
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0033 Score=74.72 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=33.7
Q ss_pred CcCCCCEEEEEEeeeeech-----hhhhhhccccCc--EEEEecC
Q psy8372 18 LSDVDKTVTLCGWLQNQRV-----DMFALLRDAYGQ--VQVIVPN 55 (883)
Q Consensus 18 ~~~~g~~v~l~gWv~~~R~-----~~f~~lRD~~G~--~qvv~~~ 55 (883)
..++|++|+|+|||+++|+ .+|+.|||++|. +|||+.+
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~ 121 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQ 121 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECC
Confidence 3679999999999999999 379999999995 9999854
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0035 Score=74.45 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=40.1
Q ss_pred ccccccCCcC-CCCEEEEEEeeeeech---hhhhhhccccCcEEEEecC
Q psy8372 11 HTCGALRLSD-VDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 11 ~~~~~~~~~~-~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
....+++.++ +|++|+|+|||++.|. .+|++|||.+|.+|+++..
T Consensus 66 ~~i~~l~~~~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~~iQ~v~~~ 114 (550)
T PTZ00401 66 IPVAVLSKPELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAV 114 (550)
T ss_pred EEHHHCCccccCCCEEEEEEEEEEEecCCCeEEEEEEeCCcCEEEEEEC
Confidence 4566788777 9999999999999999 6899999999999999854
|
|
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.011 Score=69.91 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeecc
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFK 378 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~ 378 (883)
..++..|.+..|++|....++.||+||+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 4588899999999996677899999999987
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.033 Score=62.74 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=82.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.++.||||..|..|.=+.++++... ..|++.|.+..-+...+.++...+..+.-....|..+++.....++||-|+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceee
Confidence 346789999999999997777776533 379999999999999999988776666555566666554333345899998
Q ss_pred E----cc--c------------------ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 209 I----QW--V------------------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 209 s----~~--v------------------L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. +. + +.|+ .+++|-.+..++++||+|+-++++
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L----Qr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHL----QRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHH----HHHHHHHHHhhccCCcEEEEEeee
Confidence 4 33 1 1222 457888899999999999999864
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.067 Score=62.41 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC-----Cc-cceeccCC-----------------------
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG-----AR-EFVVPTHE----------------------- 393 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g-----a~-~f~v~~~~----------------------- 393 (883)
...++...+.+.+.+.+..+.||.||-+|.|.+.. ..| +. .|.|....
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 44668888888887655356699999999998742 111 11 13332100
Q ss_pred -----CCceeeEecCHHHHHHHHHc------cCCC-cEEEEe-eceecCCCCC---CCCcceecccccccCCCHHHHHHH
Q psy8372 394 -----PNKFYSLVQSPQQLKQLLMV------GSVD-RYFQIA-RCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 394 -----~~~~~~L~~Spql~kq~l~~------~~~~-rvf~I~-~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
....++|+.+.+...-.+.. ..+. |+++++ +|||.|..++ .|.-||+|.|.-. +.+.++..+.
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~ 379 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEI 379 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHH
Confidence 12257787666532211111 2233 789955 7999998654 4458999999988 8899999888
Q ss_pred HHHHHHH---HhccCCCCceee
Q psy8372 458 IEELLCY---CLNIPTRTFSRI 476 (883)
Q Consensus 458 ~E~li~~---i~~~~~~~f~ri 476 (883)
.++++.. +++.+.-||+++
T Consensus 380 ~e~mle~~~~~l~~L~Lpyrv~ 401 (520)
T TIGR00415 380 RDKTLELAEDAADELDLEWWTE 401 (520)
T ss_pred HHHHHHHHHHHHHHcCCCeEEe
Confidence 8888854 444566666665
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0032 Score=74.25 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=40.4
Q ss_pred ccccccccCC----------cCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 9 RSHTCGALRL----------SDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 9 r~~~~~~~~~----------~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
++|++.++.. ...|++|+|+|||.+.|. ..|++|||.+|.+|+++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g~iQ~~~~~~~ 91 (496)
T TIGR00499 30 RTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDD 91 (496)
T ss_pred CCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCccEEEEEECCc
Confidence 5777766532 244889999999999998 689999999999999997654
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.026 Score=66.12 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC------CCccceeccCCCCceeeEe-cCHHH----HHHHHH
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG------GAREFVVPTHEPNKFYSLV-QSPQQ----LKQLLM 412 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~------ga~~f~v~~~~~~~~~~L~-~Spql----~kq~l~ 412 (883)
-++++.+|.+.+|+-| ++.|..||--|+|.++. +. |...|.+..+. +..+.|+ +|-+. +++.+-
T Consensus 46 g~rv~~kI~~iir~em-~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg-~~~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEM-DKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG-DRPLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHH-HhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC-CceeeeCCCcHHHHHHHHHHHhh
Confidence 4678999999999999 78999999999997741 11 22346666555 6677786 55443 333211
Q ss_pred c-cCCC-cEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 413 V-GSVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 413 ~-~~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
+ ..+. ++|||...||+|.-.+ -|..||+|=|.|-.+.|.+++.+..++++.
T Consensus 124 SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 124 SYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred hhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 0 1122 8999999999996533 345899999999999999998888887774
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.021 Score=58.31 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-------CCCccEEEccCCCCCCCcCCCCccE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-------DKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.-.+.|||||.|.++..+....+. -+.|.++-...-+..++++.... .+++.++..++..+.+. -|..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn----~f~k 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN----FFEK 136 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc----hhhh
Confidence 346899999999999988777666 78899988888887777766542 34455666666655432 1222
Q ss_pred EEEcccccccChHH-----------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDED-----------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded-----------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+-.++.+++.. -..++.+.+-+|++||.++..+
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222222333211 2357788888999999998876
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.061 Score=58.55 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChHHHHHHHh--CCC-eEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK--HFD-KIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~--g~~-~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
+.+|+=||||.=-++.-++.. +.. .|+++|+++.+++.|++..... .....+|+.+|..+..... ..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEE
Confidence 459999999987666545543 333 6899999999999999876622 3455689999987764332 47999988
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..... +..++..+++..+.+.++||..+++..
T Consensus 199 AalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 65443 222347799999999999999999885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1 Score=47.64 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCeEEEcCCeeccCCCC------CCc-cceeccCC-CCceeeEecCHHHHHHHHHc-cCC---CcEEE
Q psy8372 354 FLMRTREFLATHRDFVEVETPTLFKRTPG------GAR-EFVVPTHE-PNKFYSLVQSPQQLKQLLMV-GSV---DRYFQ 421 (883)
Q Consensus 354 i~~~iR~f~~~~~gF~EV~TP~l~~~~~~------ga~-~f~v~~~~-~~~~~~L~~Spql~kq~l~~-~~~---~rvf~ 421 (883)
+-+.+...|.++.|.+||..|+|+....| |.. ...+.... ++..+-.-+|-.-+|...++ -+| +..|.
T Consensus 15 vKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlyt 94 (330)
T COG2502 15 VKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYT 94 (330)
T ss_pred HHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceee
Confidence 44455555556679999999999764222 221 12222111 12223344666667776443 333 58999
Q ss_pred Eeeceec-CC-CCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccC
Q psy8372 422 IARCYRD-ES-TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP 469 (883)
Q Consensus 422 I~~~FR~-E~-~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~ 469 (883)
=.++.|. |+ .+..|.-=--|-|||....+-+--++.+.+.+..|.+.+
T Consensus 95 hM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~i 144 (330)
T COG2502 95 HMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAI 144 (330)
T ss_pred echhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHH
Confidence 9999997 55 567777666788999988876666666666666666553
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0044 Score=57.26 Aligned_cols=100 Identities=23% Similarity=0.236 Sum_probs=42.8
Q ss_pred EEEcCCCChHHHHHHHh---CC-CeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 139 LDVGAGIGRISKYLLAK---HF-DKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 139 LDVGCGtG~~~~~l~~~---g~-~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
||+|+..|..+..+++. .. .+++++|..+. .+.+++..... ...+++++.++..+..+....++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999988766653 12 25999999984 22222322222 23457888888765432211268999998653
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|-. +.....+..+.+.|+|||.+++.+
T Consensus 79 -H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 321 346678899999999999999876
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0051 Score=73.91 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred ccccccccCCcC---------CCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 9 RSHTCGALRLSD---------VDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 9 r~~~~~~~~~~~---------~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
++|++.++...+ .+++|+|+|||+++|. .+|++|||.+|.+||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G~IQvv~~~~~ 145 (659)
T PTZ00385 85 GITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGNELQVVGQVGE 145 (659)
T ss_pred ccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCceEEEEEECCc
Confidence 566666654332 1456999999999999 799999999999999997654
|
|
| >KOG2324|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.055 Score=59.50 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-----C--CC--CCccceeccCCCCceeeEecCHHHHHHHHHccCCC
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-----T--PG--GAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVD 417 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-----~--~~--ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~ 417 (883)
-+|.-.++.+.++.-| ++-|-.+|.-|+|++. + .. |...|.+.-+ .++.|.|...-|=.--.+|+.-..
T Consensus 51 g~R~~~K~~~~l~~~m-qs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr-~gkq~cL~pThEE~iT~lmat~~~ 128 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEM-QSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDR-KGKQMCLTPTHEEDITALMATYIP 128 (457)
T ss_pred hHHHHHHHHHHHHHHH-HhccCeeEeecccChHHHHHhcCcccccchhheEeecc-CCCEeccCCchHHHHHHHHHhcCc
Confidence 3567788999999999 7899999999999763 1 12 4445666544 367778864443222222332222
Q ss_pred --------cEEEEeeceecCCC-C--CCCCcceecccccccCCCHHHHHHH---HHHHHHHHhccCCCCceee
Q psy8372 418 --------RYFQIARCYRDEST-R--PDRQPEFTQLDIELSFTTRDDVMRL---IEELLCYCLNIPTRTFSRI 476 (883)
Q Consensus 418 --------rvf~I~~~FR~E~~-~--~~r~~EFt~le~e~~~~~~~dvm~~---~E~li~~i~~~~~~~f~ri 476 (883)
+||||++=||+|-- + --|-.||.|-|.|---.|-+..|+- +.+.-..+|+.+..||-.+
T Consensus 129 lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv 201 (457)
T KOG2324|consen 129 LSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKV 201 (457)
T ss_pred cccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 89999999999943 2 2344899999999865666665543 3333345666666666544
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.021 Score=66.84 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCC-cEEEEeeceecCCCCCC---CCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 415 SVD-RYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~~~---r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
.+. |+.|+|+|||+|.+... |-.||||.|++ .|.+.+++.+.+..++..+
T Consensus 184 dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~ 237 (456)
T PRK04173 184 KLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELR 237 (456)
T ss_pred cCCeeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHH
Confidence 344 89999999999987521 33899999998 5888777666666655444
|
|
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.013 Score=54.69 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=34.8
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccc
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDF 339 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldl 339 (883)
+++|+.++++++++++..++|+... ...+.++|+++||||+
T Consensus 68 g~~El~~~~~~ils~~~~plP~~~~--~~~~~~~r~~~R~ldl 108 (108)
T cd04322 68 GELSIFVKEFTLLSKSLRPLPEKFH--GLTDVETRYRQRYLDL 108 (108)
T ss_pred CCEEEEeCEeEEeeccCCCCCCCcc--CcCChhheeecccccC
Confidence 6799999999999999777887654 3467999999999996
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.017 Score=59.73 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCc--CCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~ 210 (883)
....|+|.-||.|..+...+.+++. |++||++|.-+..|+.+++..+ ..+++|+++|+.+..... ....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 3458999999999999988888776 9999999999999999988764 457899999987653221 01235566654
Q ss_pred c
Q psy8372 211 W 211 (883)
Q Consensus 211 ~ 211 (883)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 4
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.043 Score=58.57 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=62.6
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------cC---CCccEEEccCCCCCCCcCCCCccEE
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CD---KLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------~~---~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+|||.-+|.|..+..++..|+. |+++|-++.+....+..+... .. .+++.+.+|..++.... ..+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-CCCCcEE
Confidence 8999999999999989999887 999999999988888776653 11 34677788877765432 3479999
Q ss_pred EEccccccc
Q psy8372 208 WIQWVLMFI 216 (883)
Q Consensus 208 vs~~vL~hl 216 (883)
++-.++.|=
T Consensus 169 YlDPMfp~~ 177 (250)
T PRK10742 169 YLDPMFPHK 177 (250)
T ss_pred EECCCCCCC
Confidence 999988874
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.024 Score=64.95 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=44.1
Q ss_pred cEEEEeeceecCC-CCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDES-TRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~-~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
|+|+||+|||+|. .+++|.++|+|+|.-++..+ +.|++.+++.+++++
T Consensus 209 RIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 209 KLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred EEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999999996 68899999999998888765 999999999999887
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.092 Score=55.96 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~ 196 (883)
...|...+.. ..++..+|+|||||.=-++..++..... .++|+|++..+++...+.....+. ..+....|+..-.
T Consensus 92 Ld~fY~~if~---~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG---RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC---CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH
T ss_pred HHHHHHHHHh---cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC
Confidence 4445555533 2345779999999998888776655443 899999999999999887665432 3355666666543
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccc-cccchhhhhhhhhccc
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV-VRSLPQFCLLFSKANL 275 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~-~~s~~~~~~l~~~aGf 275 (883)
+. ...|+.+..-+++.+..... ..--++...+. .=.++++.+..+ +...+.+. ......+..++..-|.
T Consensus 168 ~~---~~~DlaLllK~lp~le~q~~-g~g~~ll~~~~-~~~~vVSfPtrS-----L~gR~~gm~~~y~~~fe~~~~~~~~ 237 (251)
T PF07091_consen 168 PK---EPADLALLLKTLPCLERQRR-GAGLELLDALR-SPHVVVSFPTRS-----LGGRNKGMEQTYSAWFEALAAERGW 237 (251)
T ss_dssp TT---SEESEEEEET-HHHHHHHST-THHHHHHHHSC-ESEEEEEEES------------TTHHHCHHHHHHHHCCTTCE
T ss_pred CC---CCcchhhHHHHHHHHHHHhc-chHHHHHHHhC-CCeEEEeccccc-----cccCccccccCHHHHHHHhcccCCc
Confidence 33 47999999998888843222 22223333332 236666665433 12222222 2223355555555555
Q ss_pred cc
Q psy8372 276 KC 277 (883)
Q Consensus 276 ~v 277 (883)
.+
T Consensus 238 ~~ 239 (251)
T PF07091_consen 238 IV 239 (251)
T ss_dssp EE
T ss_pred ee
Confidence 53
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.065 Score=58.96 Aligned_cols=106 Identities=18% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc----CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..+|||||.|.|..+..+-.-.+. .++.++.|+..-+.......... .....-++.|-.+++.. +.|++|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a---d~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA---DLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc---ceeehhh
Confidence 457999999999876422222222 67788888876665544433321 12223344444444333 3677777
Q ss_pred EcccccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 209 IQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 209 s~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
...-|-|... ..+...++.+..++.|||.|+|.+.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 6555444433 2355589999999999999999984
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.26 Score=50.69 Aligned_cols=141 Identities=15% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIW 208 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVv 208 (883)
+..++.+||-+|+.+|....++..--. ..+++|+.|+.+....-..+... +++-.+-.|+.....- ..-+..|+|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEE
Confidence 457899999999999999888876533 36999999998877665555432 3444566666543211 1114688887
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
..-+ .+++..-+..++...||+||+++++.-..+-. . ..+.... ..+-..-+++.+|+++..-.-
T Consensus 151 ~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSId-v---T~dp~~v--f~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 151 QDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSID-V---TADPEEV--FKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred EecC----CchHHHHHHHHHHHhcccCCeEEEEEEeeccc-c---cCCHHHH--HHHHHHHHHhcCceeeEEecc
Confidence 7432 22446677888999999999888876433211 0 0000000 112334566777887765443
|
|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.047 Score=64.36 Aligned_cols=120 Identities=21% Similarity=0.207 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--CC------ccceeccCC----------------------
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--GA------REFVVPTHE---------------------- 393 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--ga------~~f~v~~~~---------------------- 393 (883)
..-.++...+.+.+++.+..+.||.||.||.|.+.. -. |- .-|.+....
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 345788889999998764256699999999997742 11 11 113332100
Q ss_pred ------CCceeeEe--cCHHHHHHHH--HccCCC---cEEE-EeeceecCCCCC---CCCcceecccccccCCCHHHHHH
Q psy8372 394 ------PNKFYSLV--QSPQQLKQLL--MVGSVD---RYFQ-IARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMR 456 (883)
Q Consensus 394 ------~~~~~~L~--~Spql~kq~l--~~~~~~---rvf~-I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~ 456 (883)
....|.|+ +-|-+|.-.. +...-+ |+|+ .|+|||.|...+ .|..||+|.|.- .|.+.+++.+
T Consensus 300 ~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 300 KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 01123343 3343332210 111112 8899 559999995322 355899999998 6889999999
Q ss_pred HHHHHHHHH
Q psy8372 457 LIEELLCYC 465 (883)
Q Consensus 457 ~~E~li~~i 465 (883)
..++++...
T Consensus 379 e~e~ll~~~ 387 (517)
T PRK00960 379 IRDELLKYA 387 (517)
T ss_pred HHHHHHHHH
Confidence 999998543
|
|
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.071 Score=61.74 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcC-CCeEEEcCCeecc
Q psy8372 349 RFRSKFLMRTREFLATH-RDFVEVETPTLFK 378 (883)
Q Consensus 349 ~~rs~i~~~iR~f~~~~-~gF~EV~TP~l~~ 378 (883)
.++..|.++-|++|..+ .+++||+||+|..
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 47888999999999765 5799999999977
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.049 Score=62.19 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=37.7
Q ss_pred eeeEEEecCe--EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccc
Q psy8372 777 LHYDLVLNGN--EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRD 851 (883)
Q Consensus 777 ~~~Dlv~~G~--Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRd 851 (883)
...|+.++|. |++| +-.+| |+ +++..|++++ .--.||||||||.|++.|+++||.
T Consensus 230 ~e~dI~~~g~WlEvlG-~G~vh-P~----Vl~~~gi~~~--------------~g~AfglgLeRLaml~~~I~DIRl 286 (402)
T PLN02788 230 FELEIFFKGEWLEVLG-CGVTE-QE----ILKNNGRSDN--------------VAWAFGLGLERLAMVLFDIPDIRL 286 (402)
T ss_pred eEEEEEECCEEEEEee-EEEEc-HH----HHHHcCCCCC--------------cEEEEEEeHHHHHHhhcCCchhhh
Confidence 5678989883 7877 44455 43 4455565432 124789999999999999877774
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.27 Score=56.02 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCccEEEEcccccccCh--H----------------------------------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 201 NIKYDVIWIQWVLMFILD--E----------------------------------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~d--e----------------------------------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++.++++++.++||++. + |...+|+.-++-|.|||.+++....
T Consensus 160 ~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~G 239 (386)
T PLN02668 160 ARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLG 239 (386)
T ss_pred CCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEec
Confidence 479999999999999862 1 3455677777889999999998866
Q ss_pred cC
Q psy8372 245 AS 246 (883)
Q Consensus 245 ~~ 246 (883)
..
T Consensus 240 r~ 241 (386)
T PLN02668 240 RT 241 (386)
T ss_pred CC
Confidence 54
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.26 Score=55.49 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh------------C---CC--eEEEEeCCH-HHHHHHHHHHhh---c-cCCCccEEE-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK------------H---FD--KIDLLEQSS-KFIEQAKEEILK---D-CDKLDKCYN- 189 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~------------g---~~--~V~gvD~S~-~~le~A~~~~~~---~-~~~~~~~~~- 189 (883)
+...+|+|+||..|..+..++.. + .. +|..-|+-. +.-...+..-.. . ..+. -|..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~-~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRN-YFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTS-EEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCce-EEEEe
Confidence 45679999999999999866642 1 11 577778543 222222221110 0 1112 1222
Q ss_pred --ccCCCCCCCcCCCCccEEEEcccccccCh-------------------------------------HHHHHHHHHHHH
Q psy8372 190 --VGIQDFKPEDLNIKYDVIWIQWVLMFILD-------------------------------------EDIIKFLNLCKQ 230 (883)
Q Consensus 190 --~d~~~~~~~~~~~~FDlVvs~~vL~hl~d-------------------------------------ed~~~~l~~~~r 230 (883)
+.+.+-.. +.++.|+++++.+|||++. +|...+|+.-++
T Consensus 94 vpgSFy~rLf--P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 94 VPGSFYGRLF--PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccC--CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222112 2479999999999999842 156677777888
Q ss_pred HhccCcEEEEEecccCC
Q psy8372 231 ILNKNGIIIIKDNVASG 247 (883)
Q Consensus 231 ~LKPGG~lvi~~~~~~~ 247 (883)
-|+|||++++......+
T Consensus 172 ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HEEEEEEEEEEEEE-ST
T ss_pred eeccCcEEEEEEeeccc
Confidence 89999999998876544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.13 Score=58.99 Aligned_cols=133 Identities=16% Similarity=0.251 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCcc---ceeccC-CCCceeeEecCHH-----HH-HHHHHcc
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGARE---FVVPTH-EPNKFYSLVQSPQ-----QL-KQLLMVG 414 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~~---f~v~~~-~~~~~~~L~~Spq-----l~-kq~l~~~ 414 (883)
...++-..+++.+=++.. ++||+|+.+|.|+... --|.+. |.-..+ -.+..+||....+ +| .+.+-..
T Consensus 172 ~~a~L~rAL~~f~ld~~~-~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~ 250 (429)
T COG0172 172 KGARLERALIQFMLDLHT-KHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEE 250 (429)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhcccccccc
Confidence 445666677778888884 8999999999998752 222221 322211 1123567864433 23 2222112
Q ss_pred CCC-cEEEEeeceecCCCC----C---CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceeeehHH
Q psy8372 415 SVD-RYFQIARCYRDESTR----P---DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRISYND 480 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~----~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~rity~e 480 (883)
.+. +++-.++|||.|... + .|.-+|..+|.-. +.+.++.....|+|+.. +++.+.-||+.+.+..
T Consensus 251 ~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lct 326 (429)
T COG0172 251 DLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCT 326 (429)
T ss_pred cCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeecc
Confidence 233 777889999999765 3 3447999999844 77777777777777764 5666888999888644
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.2 Score=50.90 Aligned_cols=104 Identities=17% Similarity=0.004 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCC------CcCCC
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKP------EDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~------~~~~~ 202 (883)
..++.+|||+||.+|.++.-+.++. +. .|.|||+-.-. ...-+.++++ |+.+... ..++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3578999999999999998555543 33 78999974211 1111233333 5444321 11235
Q ss_pred CccEEEEcccc--------cccCh-HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 203 KYDVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 203 ~FDlVvs~~vL--------~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
..|+|++.+.- .|..- +-..+++.-+...++|+|.+++..+..+
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 78999986532 12110 1123344455566789999999886544
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=58.88 Aligned_cols=118 Identities=24% Similarity=0.260 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC---C-CC----ccceeccCCCCceeeEe--cCHHH---HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP---G-GA----REFVVPTHEPNKFYSLV--QSPQQ---LKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~---~-ga----~~f~v~~~~~~~~~~L~--~Spql---~kq~l 411 (883)
......+..|.+.+++.| ..+||..|+||+|....+ + |+ +.|++.... |+.+.|+ -.+++ +-..
T Consensus 14 p~e~~~~~~i~~~l~~~f-~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-g~~l~LRpD~T~pVaR~~~~~- 90 (390)
T COG3705 14 PLEARRKEEIRDQLLALF-RAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-GGRLGLRPDFTIPVARIHATL- 90 (390)
T ss_pred hhHHhhHHHHHHHHHHHH-HHhCCccccccccchhhhhhhccchhhhhhheEEecCC-CCeEEecccccHHHHHHHHHh-
Confidence 334456778888889999 689999999999977542 2 32 247775433 5557786 23333 3332
Q ss_pred HccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 412 MVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 412 ~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
+.+.-.|+.+.|++||..+....+..||+|+-+|+-+.+ -.+++.++-+.++.+
T Consensus 91 ~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~ 148 (390)
T COG3705 91 LAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKAL 148 (390)
T ss_pred cCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHc
Confidence 334456999999999999555666679999999998865 456666655555443
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.15 Score=56.12 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc-c-CCCccEEEccCC-CCCC--CcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-C-DKLDKCYNVGIQ-DFKP--EDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~-~-~~~~~~~~~d~~-~~~~--~~~~~~FDlVv 208 (883)
.-++||||||....--.|..+.+. +++|+|+++..++.|++++..+ . ...+++....-. .+.. ...++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 568999999998654334333233 6999999999999999998876 3 344555543222 1111 11135899999
Q ss_pred EcccccccCh
Q psy8372 209 IQWVLMFILD 218 (883)
Q Consensus 209 s~~vL~hl~d 218 (883)
|+.-++.-.+
T Consensus 183 CNPPFy~s~~ 192 (299)
T PF05971_consen 183 CNPPFYSSQE 192 (299)
T ss_dssp E-----SS--
T ss_pred cCCccccChh
Confidence 9998876543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.22 Score=47.49 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.+.+|+|||++.|..+++++.+|+..|+++++++...+..+++....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 47799999999999999999999999999999999999999877643
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.078 Score=58.58 Aligned_cols=76 Identities=21% Similarity=0.086 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC---c-CCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---D-LNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~---~-~~~~FDlV 207 (883)
.++..++|.-.|.|..+..++.... ..|+|+|.++.+++.|++++... ..++.++..++.++... . ....+|.|
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgi 97 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGI 97 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEE
Confidence 4677999999999999999998744 48999999999999998877644 44556777776654310 0 12467777
Q ss_pred EE
Q psy8372 208 WI 209 (883)
Q Consensus 208 vs 209 (883)
++
T Consensus 98 L~ 99 (310)
T PF01795_consen 98 LF 99 (310)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.6 Score=49.65 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+||=+|=+.-. +..++.. .+.+|+.+|+++.+++.-++.+...+.+ ++.+..|+.+..|....++||++++...
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 57899999965543 3333333 3448999999999999999988887666 6889999988777766789999999764
Q ss_pred ccccChHHHHHHHHHHHHHhccCc-EEEEE
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNG-IIIIK 241 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG-~lvi~ 241 (883)
.-+ +.+.-++.+....||..| ..++.
T Consensus 122 -yT~--~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 122 -YTP--EGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -SSH--HHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -CCH--HHHHHHHHHHHHHhCCCCceEEEE
Confidence 222 557889999999998766 44443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.067 Score=59.11 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=40.9
Q ss_pred eeeEEEe-cCe---EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 777 LHYDLVL-NGN---EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 777 ~~~Dlv~-~G~---Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
...|+.+ +|. |||+.++ +| |+ +++..|++.+ | |-..||||+|||+|+..|+++||+.
T Consensus 221 ~e~~i~~~~g~~w~eiG~~G~-vh-P~----Vl~~~gi~~~-~------------~v~afel~lerl~m~~~~i~dir~~ 281 (294)
T TIGR00468 221 AEIDVYCWEGKTWLEVLGAGM-FR-PE----VLEPMGIDPT-Y------------PGFAWGIGIERLAMLKYGIDDIRDL 281 (294)
T ss_pred EEEEEEEeCCCccEEEEEecc-Cc-HH----HHHHCCCCCC-C------------eEEEEEeeHHHHHHHHhCCcHHHHH
Confidence 4578888 676 8775554 55 53 4455676543 2 3457899999999999999999974
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.23 Score=48.53 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=58.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccccCh---------HHHHHHHHHH
Q psy8372 159 KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD---------EDIIKFLNLC 228 (883)
Q Consensus 159 ~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d---------ed~~~~l~~~ 228 (883)
+|+|+|+-+.+++.+++++.+... .+++++..+-..+...-.+++.|+|+.+. -++|. +.-..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 489999999999999999988743 35677777666554322124799998764 34443 2356788999
Q ss_pred HHHhccCcEEEEEeccc
Q psy8372 229 KQILNKNGIIIIKDNVA 245 (883)
Q Consensus 229 ~r~LKPGG~lvi~~~~~ 245 (883)
.++|+|||.+.+.....
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999998543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.49 Score=51.73 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=49.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
.+++..+|.--|.|..+..++..... +++|+|.++.+++.|+++..... .++.+++..+.++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l 85 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL 85 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence 46689999999999999999998763 79999999999999999886543 3445666554443
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.093 Score=59.17 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
.-|||||.|||.++..++..|...|++++.-..|.+.|++...+++ ...++++.-...+..... ....|+++.-....
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~-~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGG-SSRADIAVREDFDT 146 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecC-cchhhhhhHhhhhh
Confidence 4689999999999988888888899999999999999999887663 233444444333332221 12356665433332
Q ss_pred ccChHHHHHHHHHHHHHhc
Q psy8372 215 FILDEDIIKFLNLCKQILN 233 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LK 233 (883)
-+-.+.....++.+++.|.
T Consensus 147 EligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhccccchhHHHHHHHhc
Confidence 2222223345566666553
|
|
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.31 Score=56.84 Aligned_cols=101 Identities=20% Similarity=0.343 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhc-CCCeEEEcCCeeccCC---CCC--------------------------------Ccc------
Q psy8372 349 RFRSKFLMRTREFLAT-HRDFVEVETPTLFKRT---PGG--------------------------------ARE------ 386 (883)
Q Consensus 349 ~~rs~i~~~iR~f~~~-~~gF~EV~TP~l~~~~---~~g--------------------------------a~~------ 386 (883)
.+++.|++.-|++|.. +.+..||+||+|.... ..| +..
T Consensus 41 ~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~ 120 (539)
T PRK14894 41 ELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRP 120 (539)
T ss_pred HHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCccee
Confidence 4677888888887754 4577899999987621 111 101
Q ss_pred ceeccC-------CCCceeeEe--cCHHH---HHHHHHccC--CC-cEEEEeeceecCCC-CC--CCCcceecccccccC
Q psy8372 387 FVVPTH-------EPNKFYSLV--QSPQQ---LKQLLMVGS--VD-RYFQIARCYRDEST-RP--DRQPEFTQLDIELSF 448 (883)
Q Consensus 387 f~v~~~-------~~~~~~~L~--~Spql---~kq~l~~~~--~~-rvf~I~~~FR~E~~-~~--~r~~EFt~le~e~~~ 448 (883)
|..... ......||+ ++--. |+.++-..+ +. -+-|||++||||=+ ++ -|..||+|.|+|. |
T Consensus 121 FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~-F 199 (539)
T PRK14894 121 FNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEY-F 199 (539)
T ss_pred ccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEE-E
Confidence 111000 012357887 22212 555543322 22 68999999999933 22 3558999999998 6
Q ss_pred CC
Q psy8372 449 TT 450 (883)
Q Consensus 449 ~~ 450 (883)
.+
T Consensus 200 v~ 201 (539)
T PRK14894 200 VM 201 (539)
T ss_pred eC
Confidence 55
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.28 Score=54.86 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
..+|||.=||+|.=++..+..... .|+.-|+||.+++.++++...+.......+..|+..+.... ...||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~IDiDP-- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVIDIDP-- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEecCC--
Confidence 568999999999988777766544 79999999999999999998763333344446665544332 25788883321
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+. .+..++..+.+.++.||++.++....
T Consensus 130 --FG--SPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 130 --FG--SPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CC--CCchHHHHHHHHhhcCCEEEEEeccc
Confidence 21 25678899999999999999987443
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.09 Score=60.31 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=46.1
Q ss_pred eeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 777 LHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 777 ~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
.+.|++++|.||++|..+..+ +++.+|++ -|..+|+||||||+|+..|.+|||..
T Consensus 349 R~adI~~g~~el~~G~fGEi~------VLe~fGI~---------------~PVva~EIdLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 349 DTIDIMHGDLELSSAVVGPIP------LDREWGID---------------KPWIGAGFGLERLLKVKHGYKNIKRA 403 (417)
T ss_pred CeEEEEeCCEEEeeEEEEEEe------hhhhcCCC---------------CceEEEEEeHHHHHHHHhCcHHHHHh
Confidence 467999889999888888772 66777773 36889999999999999999999975
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.28 Score=45.52 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~ 165 (883)
...++-.+........+.....|+|||+|.+..-|...|+. =.|+|.
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 44455555444333334567999999999999777777877 678885
|
; GO: 0008168 methyltransferase activity |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.087 Score=49.08 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=32.9
Q ss_pred CccEEEEccccccc----ChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 203 KYDVIWIQWVLMFI----LDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 203 ~FDlVvs~~vL~hl----~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.||+|+|..|..++ .|+.+..+++++++.|+|||.|++.-..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 48999998877655 34678999999999999999999987543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.051 Score=65.16 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=39.2
Q ss_pred cccccccccCCcC---------CCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALRLSD---------VDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~~~~---------~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~ 57 (883)
.|+|++.++.... .++.|+++|||.++|. ..|++|||..|.+||++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~iQv~~~~~~ 171 (585)
T PTZ00417 109 ERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLANFAF 171 (585)
T ss_pred cCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCeeEEEEEECCc
Confidence 3677776664321 2456999999999998 479999999999999997654
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.086 Score=57.01 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHH-------HH---hhccCCCccEEEccCCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE-------EI---LKDCDKLDKCYNVGIQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~-------~~---~~~~~~~~~~~~~d~~~~~~~~~~~ 202 (883)
-.+.||||+|||.|.....+...+...++..|.+...++.-.- .+ .............+..++.... .+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~-t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH-TE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh-cc
Confidence 4678999999999999987777775678899998887732110 00 0001111111112111222211 12
Q ss_pred --CccEEEEcccccccChHHHHHH-HHHHHHHhccCcEEEEEe
Q psy8372 203 --KYDVIWIQWVLMFILDEDIIKF-LNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 --~FDlVvs~~vL~hl~ded~~~~-l~~~~r~LKPGG~lvi~~ 242 (883)
.||+|.++.++.-... ...+ ......++++.|.+++..
T Consensus 194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhhh
Confidence 7999999988877644 3344 556667778888877764
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.57 Score=50.23 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh--ccCC---CccEEEccC---CCCCCCcCCCC-cc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--DCDK---LDKCYNVGI---QDFKPEDLNIK-YD 205 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~--~~~~---~~~~~~~d~---~~~~~~~~~~~-FD 205 (883)
..+||++|+|+|..+..++.....+|...|....+......+... .... .+.....+. .+..... +. ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~--~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL--PNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc--CCccc
Confidence 557999999999888755554555688888765443332221111 1111 111222222 2111111 23 99
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+++.++.+-.. ...++..++..|..+|.+++...
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999887644 66788889999999997777764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.63 Score=52.14 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|+=+|+| .|..+..+++....+|+++|.|++-++.|++..... ++.....+.. ....+.||+|+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------~i~~~~~~~~-~~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------VINSSDSDAL-EAVKEIADAIIDT 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------EEEcCCchhh-HHhHhhCcEEEEC
Confidence 3678999999988 234566566633367999999999999999876543 2332211111 1112349999886
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
-. . ..+....+.|++||++++.-..
T Consensus 237 v~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 54 2 3566788999999999998765
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.27 Score=56.16 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+.+|||.=||+|.=+...+.. +..+|+.-|+|+.+++..++++..+... .++....|+..+.. .....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 3468999999999988777776 4558999999999999999998766443 35677777766542 12368999954
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.. +. .+..+|..+.+.++.||.|.++.
T Consensus 128 DP----fG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DP----FG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CC--CccHhHHHHHHHhhcCCEEEEec
Confidence 32 21 26689999999999999999987
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.35 Score=53.55 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~ 179 (883)
.+++.++|.-||.|..+..++.... ..|+|+|.++.+++.|++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 4677999999999999998887632 4799999999999999987653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.3 Score=53.49 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=56.8
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 216 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl 216 (883)
+|+|+-||.|.++..+...|+..+.++|+++.+++..+.+.... .+..|+.++........+|+++.......+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 79999999999998888888888899999999999988876532 456677766543212469999987654433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.81 Score=51.34 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=76.8
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc----
Q psy8372 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD-----KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED---- 199 (883)
Q Consensus 129 ~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-----~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~---- 199 (883)
.+...++.+|||.++..|.=+..+++..+. .|++-|.++.=+.............+......++..++...
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 344578999999999999988777776431 58899999877777766653333333334444444333220
Q ss_pred ---CCCCccEEEEcc------cccccCh---------------HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 200 ---LNIKYDVIWIQW------VLMFILD---------------EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 200 ---~~~~FDlVvs~~------vL~hl~d---------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
....||-|+|-- ++.+-++ .-...++.+..++||+||.++-++.+-.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 124799998632 2222111 0134678899999999999999997654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.15 Score=59.05 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=62.2
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCCcCCCCccEEEEccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~FDlVvs~~v 212 (883)
..|+|..+|.|.++..|.....= .|+-+ ..+..+...-.+..- - +-.|. +.++.. +.+||+|.+..+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLI------G-~yhDWCE~fsTY--PRTYDLlHA~~l 436 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLI------G-VYHDWCEAFSTY--PRTYDLLHADGL 436 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccc------h-hccchhhccCCC--Ccchhheehhhh
Confidence 46999999999999866554321 22222 122333322222110 0 11121 223332 379999999998
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+.+..+ -++..++-++-|+|+|||.++|.|.
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 887643 3477899999999999999999883
|
; GO: 0008168 methyltransferase activity |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.064 Score=55.30 Aligned_cols=52 Identities=29% Similarity=0.597 Sum_probs=39.6
Q ss_pred eeeEEEec-----CeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHH
Q psy8372 777 LHYDLVLN-----GNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRL 839 (883)
Q Consensus 777 ~~~Dlv~~-----G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRl 839 (883)
.++|+.++ |.|||+.+....... +.++.. |+.++.+++.|||.|+|+|+||+
T Consensus 155 ~~~~i~~~~~~~~~~eig~~g~~~~~~~---~~~~l~--------~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 155 PGFEIEVDHPEGRGLEIGSGGYRQDEQA---RAADLY--------FLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred ceEEEEEEccCCCeEEEeeceeecCchh---Hhhhhh--------eecccccccCceeecCccCccCC
Confidence 57899999 999998888766432 223222 45556789999999999999996
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.41 Score=47.63 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHH-HHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ-AKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~-A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++++|=+|+..=-.-...+..|+.+|.-||..+--++. .+.+. .++...|...-. ....++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------ssi~p~df~~~~-~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------SSILPVDFAKNW-QKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------ccccHHHHHHHH-HHhhccchhhheechh
Confidence 56788889887666655667777788888865421111 11111 111111211100 0113689999999999
Q ss_pred cccC---------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 214 MFIL---------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 214 ~hl~---------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
+|+. +..-...+.++.++|||||.|++..+...+... + ..+..+ ....+..+ =.||+++..-.+.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~-f--NahRiY-g~~rL~mm--~~gfe~i~tfs~~ 147 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQ-F--NAHRIY-GPIRLAMM--FYGFEWIDTFSGD 147 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceE-E--ecceee-cHhHHHHH--hCCcEEEeeeccC
Confidence 9971 111246778999999999999999987653211 1 111111 22233333 3578877665443
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.64 Score=56.00 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCCC--C-----CC-ccceeccCCCCceeeEecC--HHHHHHHHHc-cCC--Cc
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRTP--G-----GA-REFVVPTHEPNKFYSLVQS--PQQLKQLLMV-GSV--DR 418 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~~--~-----ga-~~f~v~~~~~~~~~~L~~S--pql~kq~l~~-~~~--~r 418 (883)
.++.+.+|++| -..||.|+-|..+++... . .. ....+...-....-+|++| |.+.+-+..- .+. -|
T Consensus 362 ~~~~~~ir~~L-~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~ 440 (552)
T PRK09616 362 EKLERAIRDLM-VGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQK 440 (552)
T ss_pred HHHHHHHHHHH-HhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCee
Confidence 45667789999 589999999999976521 0 00 1122222212233467766 3444332211 111 28
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
+||||+||+.+..+..+-.|++++.+-+++. |+.++...+|.++..+
T Consensus 441 lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~l 489 (552)
T PRK09616 441 IFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLREL 489 (552)
T ss_pred EEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 9999999998654333436999999888874 7999999999998653
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.4 Score=47.87 Aligned_cols=144 Identities=8% Similarity=0.065 Sum_probs=87.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHhhc---cCCCccEEEccCCC-CCCC--c--C-CCCc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKD---CDKLDKCYNVGIQD-FKPE--D--L-NIKY 204 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S-~~~le~A~~~~~~~---~~~~~~~~~~d~~~-~~~~--~--~-~~~F 204 (883)
...|+.+|||-=.-...+-. .. .+..+|++ |++++.-++.+... ...+..++.+|+.+ +... . . .+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 34699999998766654422 22 24444444 45555555555432 23345677777651 1100 0 0 1234
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------c----c---ccCCcccccccchhhhhhhh
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------N----E---YDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~----~---~~~~~~~~~~s~~~~~~l~~ 271 (883)
-++++-.++.+++.++..++++.+.+...||+.+++......... . . .......+..+..+...+|.
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence 578889999999998899999999999889999888654321100 0 0 11122223335678889999
Q ss_pred hcccccccc
Q psy8372 272 KANLKCVKS 280 (883)
Q Consensus 272 ~aGf~vv~~ 280 (883)
..||++...
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999988755
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.62 Score=55.94 Aligned_cols=115 Identities=25% Similarity=0.308 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCcc------ceeccCCCCceeeEe--cCHH---HHHHHHHc
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGARE------FVVPTHEPNKFYSLV--QSPQ---QLKQLLMV 413 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~~------f~v~~~~~~~~~~L~--~Spq---l~kq~l~~ 413 (883)
..+|+.+.+.+|.-. .+.||.||.||.|.... ..|.-. |.+... ++.|.|. ..|. .|++.+-.
T Consensus 220 ~~ir~~le~y~~~~~-~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~--~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 220 ATIRNLLEDYVRTKL-RSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESD--DREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred ccHHHHHHHHHHHHH-HhcCceEecCCeeeecccchhccchhhccccceeeccC--ChhheeeeccCHhHHHHHhcCCcc
Confidence 578999999999999 68899999999996642 233321 222221 2344553 5552 23332111
Q ss_pred -cCC-CcEEEEeeceecCCCCCC----CCcceecccccccCCCHHHHHHHHHHHHHHHh
Q psy8372 414 -GSV-DRYFQIARCYRDESTRPD----RQPEFTQLDIELSFTTRDDVMRLIEELLCYCL 466 (883)
Q Consensus 414 -~~~-~rvf~I~~~FR~E~~~~~----r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~ 466 (883)
-.+ -|++++|.|||.|.+... |-.+|||=|.-. |...+++.+.+.+.+..+.
T Consensus 297 YR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~ 354 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELIL 354 (589)
T ss_pred eeccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHH
Confidence 001 289999999999998764 458999999866 6667777777776666554
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.62 Score=49.54 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=46.4
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHhhccC------CCccEEEccCCCCCCCcCCCCccE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE---EILKDCD------KLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~---~~~~~~~------~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+|||.-||-|.-+.-++..|+. |++++-|+-+....+. ++..... .+++.+.+|..++.. ....+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCCE
Confidence 38999999999999877767764 9999999876665543 3332211 356888999888765 33579999
Q ss_pred EEEccccccc
Q psy8372 207 IWIQWVLMFI 216 (883)
Q Consensus 207 Vvs~~vL~hl 216 (883)
|++-.++.+-
T Consensus 155 VY~DPMFp~~ 164 (234)
T PF04445_consen 155 VYFDPMFPER 164 (234)
T ss_dssp EEE--S----
T ss_pred EEECCCCCCc
Confidence 9999988773
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.36 Score=57.22 Aligned_cols=57 Identities=32% Similarity=0.529 Sum_probs=40.6
Q ss_pred eeeEEEecC---eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccc
Q psy8372 777 LHYDLVLNG---NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853 (883)
Q Consensus 777 ~~~Dlv~~G---~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi 853 (883)
...++.++| .|||+.+ .+| |+ +++.+|++ .|...|+||+|||+|+..|+++|||..
T Consensus 420 ~~~~i~~~g~~w~eiG~~G-~l~-Pe----vl~~~gi~---------------~~v~~~el~le~l~m~~~~~~dir~l~ 478 (489)
T PRK04172 420 VEVEVYHEGLGWVELGGAG-IFR-PE----VLEPLGID---------------VPVLAWGLGIERLAMLRLGLDDIRDLY 478 (489)
T ss_pred EEEEEEECCCCeEEEEecc-ccC-HH----HHHHCCCC---------------CceEEEEEcHHHHHHHHhCCcHHHHHH
Confidence 456888877 5766444 455 43 34455553 245789999999999999999999864
Q ss_pred c
Q psy8372 854 A 854 (883)
Q Consensus 854 ~ 854 (883)
-
T Consensus 479 ~ 479 (489)
T PRK04172 479 S 479 (489)
T ss_pred h
Confidence 3
|
|
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.32 Score=44.96 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=30.2
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccc
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYL 337 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~l 337 (883)
+++|+.++++++++++. ++|+..+ .++++|++||||
T Consensus 68 ~~~Ei~~~~i~vl~~a~-~~pi~~~----~~~~~~~~~rhL 103 (103)
T cd04319 68 GGAEVHGEKLEIIQNVE-FFPITED----ASDEFLLDVRHL 103 (103)
T ss_pred CCEEEEEEEEEEEecCC-CCccCCC----CCHHHHhhccCC
Confidence 36999999999999994 7887643 379999999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.71 Score=48.15 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-----CCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEE
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-----HFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCY 188 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-----g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~ 188 (883)
.....+++-++ ++..|+|+|.-.|.-+..++.. +..+|+|+|+.......... ... ....++++
T Consensus 21 m~~~qeli~~~--------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i 90 (206)
T PF04989_consen 21 MVAYQELIWEL--------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFI 90 (206)
T ss_dssp HHHHHHHHHHH----------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEE
T ss_pred HHHHHHHHHHh--------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEE
Confidence 44455556665 4569999999999988766542 22389999996433222111 111 23567899
Q ss_pred EccCCCCCCC----cC--CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 189 NVGIQDFKPE----DL--NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 189 ~~d~~~~~~~----~~--~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++|..+.... .. ...-.+|+--. +|.. +...+.|+....++++|+++++.|...
T Consensus 91 ~Gds~d~~~~~~v~~~~~~~~~vlVilDs--~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 91 QGDSIDPEIVDQVRELASPPHPVLVILDS--SHTH-EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp ES-SSSTHHHHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ECCCCCHHHHHHHHHhhccCCceEEEECC--CccH-HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 9988765311 10 12334555432 3332 236677888999999999999988653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.8 Score=49.84 Aligned_cols=126 Identities=13% Similarity=-0.002 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC---C--CeEEEEeCCHHHHHHHHHHHhhccCCC-ccE
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH---F--DKIDLLEQSSKFIEQAKEEILKDCDKL-DKC 187 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g---~--~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~ 187 (883)
..+...+++..++.. .+..+|.|..||+|.+........ . ..++|.|+.+.....|+.+..-++... ...
T Consensus 170 TP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 170 TPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred ChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 455566666666432 355699999999998876554431 1 358999999999999999876554331 122
Q ss_pred EEccCCCCCCC---cCCCCccEEEEccccc---cc-------------------C-hHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 188 YNVGIQDFKPE---DLNIKYDVIWIQWVLM---FI-------------------L-DEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 188 ~~~d~~~~~~~---~~~~~FDlVvs~~vL~---hl-------------------~-ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
...|...-+.. ...+.||.|+++.-+. +. + ......+++.+...|+|||+..|.
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 23332222211 1135799999866442 10 0 012368999999999999977776
Q ss_pred ec
Q psy8372 242 DN 243 (883)
Q Consensus 242 ~~ 243 (883)
.+
T Consensus 326 l~ 327 (489)
T COG0286 326 LP 327 (489)
T ss_pred ec
Confidence 64
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.6 Score=42.75 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+.++.+|+|+|.|......+..|....+|+++++-.+..++-+.... ..+...|..-|+-..... .|.-|+...
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~----dy~~vviFg 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR----DYRNVVIFG 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc----ccceEEEee
Confidence 455689999999999987677777446899999999999988776554 334456677666544432 244454443
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+=.-+++ +-.++..-|..+..++..-
T Consensus 147 aes~m~d-----Le~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 147 AESVMPD-----LEDKLRTELPANTRVVACR 172 (199)
T ss_pred hHHHHhh-----hHHHHHhhCcCCCeEEEEe
Confidence 3222222 3334444555555555443
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.6 Score=48.95 Aligned_cols=127 Identities=16% Similarity=0.086 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCC-CccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI-KYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~FDlVvs~~vL 213 (883)
..+++|+=||.|.+..-+...|+.-+.++|+++.+++.-+.+... ......|+.......... .+|+++...-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 458999999999999888888988888999999999998888763 245666666555433223 78999986655
Q ss_pred cccCh-------HH----HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccc
Q psy8372 214 MFILD-------ED----IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 214 ~hl~d-------ed----~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+.++- ++ +.--+.++...++| .+++.++... .... .......+...|++.|+.
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g----l~~~----~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG----LLSS----KGQTFDEIKKELEELGYG 141 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch----HHhc----CchHHHHHHHHHHHcCCc
Confidence 55422 11 22344555566677 5555554432 1111 223567899999999997
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=88.59 E-value=1 Score=48.97 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=76.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+...+||=||.|.|......+.. ...+++-+|+....++..++..+.. ..+.+..+-+|-..+......++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45679999999999998766554 2337889999999999998877654 234455566665444332224799999
Q ss_pred EEcccccccChH--HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~de--d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.-..=.-.+.. -...+++.+.+.||+||++++..
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 964322222221 14578889999999999988875
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.8 Score=40.70 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=76.8
Q ss_pred EcCCCChHHHHHHHhCC-C-eEEE--EeCCHHHHHHHH---HHHhhc-cCCCccEEEccCCCCCCCc--CCCCccEEEEc
Q psy8372 141 VGAGIGRISKYLLAKHF-D-KIDL--LEQSSKFIEQAK---EEILKD-CDKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 210 (883)
Q Consensus 141 VGCGtG~~~~~l~~~g~-~-~V~g--vD~S~~~le~A~---~~~~~~-~~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~ 210 (883)
||=|.=.++..++.... . .+++ .|......+... .++... .....-....|+..+.... ..+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 55555566666666533 2 4555 465555444433 333332 1222234567777765433 35789999987
Q ss_pred ccccccC-------------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 211 WVLMFIL-------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 211 ~vL~hl~-------------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
. .|.. .+-+..+++.+.++|+++|.+.|+-..... ...| ....+.+++||.+
T Consensus 83 F--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W----~i~~lA~~~gl~l 147 (166)
T PF10354_consen 83 F--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSW----NIEELAAEAGLVL 147 (166)
T ss_pred C--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Cccc----cHHHHHHhcCCEE
Confidence 5 3554 123678999999999999999998754322 1122 4457778889988
Q ss_pred ccccC
Q psy8372 278 VKSEK 282 (883)
Q Consensus 278 v~~~~ 282 (883)
+....
T Consensus 148 ~~~~~ 152 (166)
T PF10354_consen 148 VRKVP 152 (166)
T ss_pred EEEec
Confidence 76644
|
|
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.39 Score=58.27 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=51.0
Q ss_pred CceeeEe----cCHHH-HHHHHHccC--CC-cEEEEeeceecCC-CCC--CCCcceecccccccCCCH--------HHHH
Q psy8372 395 NKFYSLV----QSPQQ-LKQLLMVGS--VD-RYFQIARCYRDES-TRP--DRQPEFTQLDIELSFTTR--------DDVM 455 (883)
Q Consensus 395 ~~~~~L~----~Spql-~kq~l~~~~--~~-rvf~I~~~FR~E~-~~~--~r~~EFt~le~e~~~~~~--------~dvm 455 (883)
+...||+ |..=+ +|.++-..+ +. -+-|||++||||= .+. -|..||+|.|+|. |.+- +++-
T Consensus 246 ~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~P~~k~h~~f~~v~ 324 (684)
T PLN02734 246 LSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVDPEDKSHPKFSEVA 324 (684)
T ss_pred CccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhhe-ecCcccccccchhhhh
Confidence 3467886 22211 566543332 22 6899999999993 333 3669999999998 6653 3333
Q ss_pred HHHHHHHHHHhccCCCCceeeehHHHHH
Q psy8372 456 RLIEELLCYCLNIPTRTFSRISYNDAIS 483 (883)
Q Consensus 456 ~~~E~li~~i~~~~~~~f~rity~ea~~ 483 (883)
++.-.|+..-.+.-..+-.+||..||++
T Consensus 325 ~~~l~l~~~~~q~~~~~~~~~t~~eAv~ 352 (684)
T PLN02734 325 DLEFLLFPREEQLGGQKAKPMRLGEAVS 352 (684)
T ss_pred hhhhhcccHhhhhccCCcccccHHHHHH
Confidence 3333333221111112224889999987
|
|
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.3 Score=49.09 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCChH--HHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc--C-CCCCCCcCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRI--SKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG--I-QDFKPEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~--~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d--~-~~~~~~~~~~~FDlV 207 (883)
....++|+|.|.|.- +...+.+. ...++.||.|..|+.............. ..+... . ....+......||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g-~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIG-EPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcC-chhccccchhcccCCCCcccceeeE
Confidence 345678888877654 33333333 3379999999999999988877621110 111111 1 112222323569999
Q ss_pred EEcccccccChHH-HHHHH-HHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILDED-IIKFL-NLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~ded-~~~~l-~~~~r~LKPGG~lvi~~~ 243 (883)
+|...++++.... ..... .-..+..++||++++...
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 9999999986522 22233 334566688999998874
|
|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=85.72 E-value=0.59 Score=39.74 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=27.8
Q ss_pred EEEEEeeeee-ch---hhhhhhccccCcEEEEecC
Q psy8372 25 VTLCGWLQNQ-RV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 25 v~l~gWv~~~-R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
|+++|||.++ |. ..|+.|+|.+|.+|+++..
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~ 35 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFN 35 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEcc
Confidence 7999999988 54 7899999999999999866
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=2.4 Score=46.61 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~ 179 (883)
..++..++... ..++..|||.=||+|..+..+...+- +.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~--S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS--SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 44555554322 25788999999999999975544444 599999999999999999763
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=85.02 E-value=2 Score=49.17 Aligned_cols=107 Identities=15% Similarity=0.052 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc-CC-CCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGI-GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQ-DFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d-~~-~~~~~~~~~~FDlVv 208 (883)
.++.+||.+|||. |..+..++.... .+++++|.++..++.+++.... ..+.....+ .. .+.....+..+|+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---ETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 5678999999988 777777776644 3699999999999998875321 111111110 00 000001113689888
Q ss_pred Eccc-----------cccc--ChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWV-----------LMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~v-----------L~hl--~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-.-. +.|. +..+....+.++.++|+|+|.+++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 7421 1111 00113457888999999999998875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.64 E-value=2.7 Score=51.81 Aligned_cols=127 Identities=9% Similarity=-0.048 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-------C-----C-eEEEEeCCH---HHHHHHHH-----------HHhhc-----c
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-------F-----D-KIDLLEQSS---KFIEQAKE-----------EILKD-----C 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-------~-----~-~V~gvD~S~---~~le~A~~-----------~~~~~-----~ 181 (883)
+.-+|||+|-|+|.+....+... . . +++++|..| ..+..+.+ ..... +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999766554321 1 2 788888533 33333321 11110 0
Q ss_pred C-------C--CccEEEccCCCCCCCcCCCCccEEEEccccc-ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc
Q psy8372 182 D-------K--LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251 (883)
Q Consensus 182 ~-------~--~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~ 251 (883)
. . ..+.+.+|+.+..+.- ...+|+++.-.--. +-|+-=-..+++.++++++|||.+.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 0 0 1134445554432211 24699998754211 1111002479999999999999988554
Q ss_pred ccCCcccccccchhhhhhhhhcccccccc
Q psy8372 252 YDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 252 ~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.....+..|..+||++-+.
T Consensus 207 ----------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ----------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----------hHHHHHHHHHHcCCeeeec
Confidence 3557899999999998643
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=84.32 E-value=1.8 Score=44.97 Aligned_cols=42 Identities=24% Similarity=0.092 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~ 175 (883)
.++..|||.=||+|..+..+...+. +.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 5688999999999999985555554 59999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=84.32 E-value=2.4 Score=47.70 Aligned_cols=43 Identities=33% Similarity=0.632 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEE 176 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~ 176 (883)
.+-..|.|+|+|.|+++. ++..++. .|.+||-|....+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr-~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSR-FLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHH-HHhhccCceEEEeccchHHHHHHHHH
Confidence 445689999999999997 5555555 899999998877777653
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.20 E-value=8.4 Score=41.15 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcC-CCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDL-NIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~-~~~FD 205 (883)
..+...+|+|+|+..=+..++.. +.. .++.+|+|...+....+.+... ..-.+.-+++|........+ .++==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 35678999999999877766543 332 7899999999887655444332 22122334444332111110 12233
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++...++-.+.+++...++..++.+|+||-++++..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 3455678888888889999999999999999999865
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=83.99 E-value=2 Score=44.58 Aligned_cols=109 Identities=23% Similarity=0.207 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCCC------CCCccceeccCCCCceeeEecCH--HHHHHHH--HccCCC--cE
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRTP------GGAREFVVPTHEPNKFYSLVQSP--QQLKQLL--MVGSVD--RY 419 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~~------~ga~~f~v~~~~~~~~~~L~~Sp--ql~kq~l--~~~~~~--rv 419 (883)
..+.+.+|++| -..||.||.|..++.... +.+....+...-....-+|++|- .+.+-+. ...+.. |+
T Consensus 3 ~~~~~~ir~~L-~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 3 QKLERKLRRLL-AGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred hHHHHHHHHHH-HHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 34667889999 579999999999976411 00011111111111112344432 2222211 112212 99
Q ss_pred EEEeeceecCCCCCCCC-cceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 420 FQIARCYRDESTRPDRQ-PEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 420 f~I~~~FR~E~~~~~r~-~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
||||+||..+.. + .|.+.+=+-+++ .|+.|+-..+|.++..+
T Consensus 82 FEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 82 FEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred EEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 999999976431 2 244444333333 37888888888888644
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >KOG1035|consensus | Back alignment and domain information |
|---|
Probab=83.94 E-value=3.9 Score=52.26 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-CC-CC-CccceeccCCCCceeeEe----cCHHHHHHHHHccCC
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TP-GG-AREFVVPTHEPNKFYSLV----QSPQQLKQLLMVGSV 416 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-~~-~g-a~~f~v~~~~~~~~~~L~----~Spql~kq~l~~~~~ 416 (883)
.-.+-.+|..+...+-+.| .++|++|++||-+... .+ .+ +....+..+ .|....|+ +----|.-+--+. .
T Consensus 928 ~~~~~~l~~~v~e~~~~if-r~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~-sG~~v~Lp~DLr~pfar~vs~N~~~-~ 1004 (1351)
T KOG1035|consen 928 TEINNELREYVVEEVVKIF-RKHGAIELETPPLSLRNACAYFSRKAVELLDH-SGDVVELPYDLRLPFARYVSRNSVL-S 1004 (1351)
T ss_pred chhHHHHHHHHHHHHHHHH-HHhcceeccCCccccccccchhccceeeeecC-CCCEEEeeccccchHHHHhhhchHH-H
Confidence 3445678899999999999 5899999999977443 22 22 222333222 24433332 2111111110001 2
Q ss_pred CcEEEEeeceecCCCCCCCC-cceecccccccCCC----HHHHHHHHHHHHHHHhccCCCCceeeehHHHHHH
Q psy8372 417 DRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT----RDDVMRLIEELLCYCLNIPTRTFSRISYNDAISL 484 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~----~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~ 484 (883)
-|-|+|+++||-+. .+ | .|++.+++-+...+ -.|++.++-+++..++..-+ -+-+|.+.+.++-
T Consensus 1005 ~Kry~i~rVyr~~~-~~--hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~n-~~i~lnH~~LL~A 1073 (1351)
T KOG1035|consen 1005 FKRYCISRVYRPAI-HN--HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEGN-CDIHLNHADLLEA 1073 (1351)
T ss_pred HHHhhhheeecccc-cC--CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccCc-eeEEeChHHHHHH
Confidence 36789999999998 22 6 59999999988875 68999999999999876632 3556677665543
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=83.59 E-value=3.9 Score=43.34 Aligned_cols=107 Identities=14% Similarity=-0.023 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-CCCCccEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-LNIKYDVI 207 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~FDlV 207 (883)
+.+++.+||-+|+++|....+...- |.. -|++|+.|...-...-..+... .++-.+..|+....... +-.-.|+|
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEE
Confidence 4578999999999999987666554 333 6999998865433322222211 22334445554321110 01245666
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++.-. ++++...+.-++...||+||.++++.-
T Consensus 231 FaDva----qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 231 FADVA----QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eccCC----CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 65321 113345556678889999999999864
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=83.33 E-value=0.57 Score=54.09 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=36.1
Q ss_pred eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 786 NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 786 ~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
.||+|.++ -+|++ ++..|+++ |...||||+|||+|+..|+++||+.
T Consensus 295 iEIgG~Gm--VhPeV----L~~~GId~---------------PV~AFGIGVERlAMi~ygi~DIR~l 340 (533)
T TIGR00470 295 IEVATFGV--YSPIA----LAKYNIDV---------------PVMNLGLGVERLAMILYGYEDVRAM 340 (533)
T ss_pred EEEEeccc--cCHHH----HHHcCCCC---------------ceEEEEecHHHHHHHHhCCcHHHhh
Confidence 69887775 55654 45567753 4468999999999999999999994
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.3 Score=46.39 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC----------eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD----------KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------ 198 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~----------~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~------ 198 (883)
-.|++|+.+..|.++..+..+.+. .+++||+-+-+ ...-+..+++|++.....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence 358999999999999866654221 28889874321 223345677887765321
Q ss_pred cCCCCccEEEEccc-----ccccCh----HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 199 DLNIKYDVIWIQWV-----LMFILD----EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 199 ~~~~~FDlVvs~~v-----L~hl~d----ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++.|+|+|..+ +|.+.. +-+.++|.-...+|||||.|+-.-+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 11358999999653 444421 2355677778899999999987653
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=82.95 E-value=2.6 Score=49.23 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCChHHHHHHHh---CCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK---HFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~---g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...|+=+|+|-|-+....++. ... .+++|+-+|.++-..+.+.-..-.+.++.+..|+..+.++. .+.|++++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~--eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPR--EQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCch--hhccchHH
Confidence 456889999999887655442 111 69999999999888877544445667799999999988542 58898887
Q ss_pred cccccccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
- .|--+.| |--...|..+-+.|||.|+.+=..
T Consensus 446 E-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 446 E-LLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred H-hhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 4 3344433 334578999999999998765443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.51 E-value=3.7 Score=44.21 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCC---------CeEEEEeCCHHHHHHHHHHHhhcc----CCCccEEE-ccCCCCCCCcC
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHF---------DKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYN-VGIQDFKPEDL 200 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~---------~~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~-~d~~~~~~~~~ 200 (883)
.-+|+|+|+|+|.++..++.... .+++.||+|+.+.+.-++++.... ........ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p---- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP---- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----
Confidence 46999999999999999886411 269999999999888888776531 01111222 1222221
Q ss_pred CCCccEEEEcccccccC
Q psy8372 201 NIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ 217 (883)
..-+|+++.++.-+|
T Consensus 95 --~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 --FPGFIIANELFDALP 109 (252)
T ss_dssp --CCEEEEEESSGGGS-
T ss_pred --CCEEEEEeeehhcCc
Confidence 345677888887775
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.37 E-value=4.2 Score=43.26 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.++..|||.=||+|..+......+. .++|+|+++...+.|.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4688999999999999985555555 4999999999999999987654
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=81.77 E-value=2.6 Score=46.50 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 216 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl 216 (883)
+++|+=||.|.++.-+...|+..+.++|+++.+.+.-+.+.. .....|+.++.....++.+|+++...-.+-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCceE
Confidence 799999999999998888898889999999999999988876 3577777776543322259999975543332
Q ss_pred C---------hH--HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 217 L---------DE--DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 217 ~---------de--d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+ ++ .+-.-+-++.+.++| .+++.++... ...... ......+...|++.|+.+.
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~----l~~~~~---~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPG----LLSSKN---GEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGG----GGTGGG---HHHHHHHHHHHHHTTEEEE
T ss_pred eccccccccccccchhhHHHHHHHhhccc--eEEEecccce----eecccc---ccccccccccccccceeeh
Confidence 1 11 122233444455677 3344454321 111111 1234577788888888764
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=7.5 Score=46.30 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCCChH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC-----------CCCC--
Q psy8372 133 PGKTRVLDVGAGIGRI-SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-----------FKPE-- 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~-~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~-----------~~~~-- 198 (883)
.++.+||=+|||.=.+ +...+......|+++|.++.-++.+++.... ++..+..+ ....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~-------~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE-------FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-------EEEeccccccccccchhhhcchhHH
Confidence 4688999999998554 4434443233699999999999999874332 22111111 0000
Q ss_pred --------cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 199 --------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 199 --------~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.-..+|+|+.......-+. +..+.+++.+.+||||.++...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~a--P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPA--PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccC--cchHHHHHHHhcCCCCEEEEEc
Confidence 00035899998664432211 3334599999999999988765
|
|
| >KOG2783|consensus | Back alignment and domain information |
|---|
Probab=81.42 E-value=0.8 Score=51.15 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCccceec--cCCCCceeeEe--------cCHHHHHHHHHccC
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLV--------QSPQQLKQLLMVGS 415 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~f~v~--~~~~~~~~~L~--------~Spql~kq~l~~~~ 415 (883)
.+=.+|..|...+.......-...+..+|+.+....-+.-.|+-+ .+.+...||.. +|.-. --++..+
T Consensus 73 plg~lr~~i~~~f~~~~~~~fs~~~~~spvvt~~qnfdsl~~p~dh~sr~ksdtyy~n~~~~lr~htsahq--~e~~~~~ 150 (436)
T KOG2783|consen 73 PLGILRQRIEDYFYKTYRNLFSIFENESPVVTTYQNFDSLLFPADHVSRSKSDTYYVNHTHCLRAHTSAHQ--HELFQKG 150 (436)
T ss_pred chhHHHHHHHHHHHHhhcccchhccCCCceeehhhhcccccCcccccccCcCCceeecceeeehhcchhhH--HHHHHhc
Confidence 344566677777666652223567888888865433333333332 22334444442 33311 1134555
Q ss_pred CCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 416 ~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
.+.--..|-+||-..++..|.|=|.|+|--..+.
T Consensus 151 ~~~flv~~DVyrrdeidsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 151 LDGFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred ccccceeeeeeeeccccccccceeccccceeEEe
Confidence 6666788999999999999999999999766553
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.37 E-value=4.5 Score=42.69 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHH--hCCC-eEEEEeCCHHHHHHHHHHHhhc-c-CCCccEE-EccCCCCCCC--cCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLA--KHFD-KIDLLEQSSKFIEQAKEEILKD-C-DKLDKCY-NVGIQDFKPE--DLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~--~g~~-~V~gvD~S~~~le~A~~~~~~~-~-~~~~~~~-~~d~~~~~~~--~~~~~F 204 (883)
.+..++||||.|.- +++-+- +-+. ..+|.|+++..++.|+.....+ . .+.++.. +.|-..+-+. ..++.|
T Consensus 77 ~~~i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 77 GKNIRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred cCceEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 35678999987764 332221 1122 5899999999999999988765 1 1222222 2232222221 114689
Q ss_pred cEEEEccccccc
Q psy8372 205 DVIWIQWVLMFI 216 (883)
Q Consensus 205 DlVvs~~vL~hl 216 (883)
|+++|+.-+|.-
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999998744
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 883 | ||||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 1e-59 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 6e-54 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 4e-43 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 2e-35 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 5e-43 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 3e-35 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 6e-42 | ||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 7e-36 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 1e-29 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 1e-20 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 1e-11 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 5e-19 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 3e-09 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 3e-18 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 3e-09 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 4e-12 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 7e-10 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 4e-12 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 4e-06 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 3e-11 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 3e-05 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 7e-11 | ||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 7e-11 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-10 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 3e-09 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 1e-10 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 2e-06 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 1e-10 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 3e-09 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 9e-10 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 1e-06 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 3e-09 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 3e-08 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 4e-08 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 5e-05 | ||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 4e-06 | ||
| 3a5z_A | 328 | Crystal Structure Of Escherichia Coli Genx In Compl | 1e-05 | ||
| 3a5z_A | 328 | Crystal Structure Of Escherichia Coli Genx In Compl | 2e-04 | ||
| 3a5y_A | 345 | Crystal Structure Of Genx From Escherichia Coli In | 1e-05 | ||
| 3a5y_A | 345 | Crystal Structure Of Genx From Escherichia Coli In | 2e-04 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-05 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 2e-05 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 2e-04 | ||
| 3g1z_A | 326 | Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe | 3e-04 | ||
| 3g1z_A | 326 | Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe | 6e-04 |
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 | Back alignment and structure |
|
| >pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 | Back alignment and structure |
|
| >pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 | Back alignment and structure |
|
| >pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 | Back alignment and structure |
|
| >pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 4e-91
Identities = 92/205 (44%), Positives = 129/205 (62%), Gaps = 11/205 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+AS++T++N+ADV +P + E+ RLK+RYLD R PEM L+ R+K R
Sbjct: 93 EVLASSLTIINRADV-LPLDS--NHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVR 149
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLVQSPQQLKQLLMVGSVD 417
F+ H F+++ETP L K TP GAR+++VP H KFY+L QSPQ KQLLM+ D
Sbjct: 150 RFMDDH-GFLDIETPMLTKATPEGARDYLVPSRVH-KGKFYALPQSPQLFKQLLMMSGFD 207
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRTF 473
RY+QI +C+RDE R DRQPEFTQ+D+E SF T V ++E L+ + + F
Sbjct: 208 RYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDF 267
Query: 474 SRISYNDAISLYGSDKPDLRYDCKI 498
+++ +A YGSDKPDLR ++
Sbjct: 268 PVMTFAEAERRYGSDKPDLRNPMEL 292
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 243 bits (624), Expect = 8e-71
Identities = 88/291 (30%), Positives = 135/291 (46%), Gaps = 30/291 (10%)
Query: 599 KNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKK------AFNDVKMS 652
K+V+ F V L +P T K+I EY N K A+
Sbjct: 300 KSVE-FAVFAGPANDPKGRV-AALRVPGGASLTRKQIDEYGNFVKIYGAKGLAY------ 351
Query: 653 TVKVQDSLEWTNKLT----KILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIR 708
+KV + + + K L +E+ ++ ++GD+I ++ V +G +R
Sbjct: 352 -IKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALR 410
Query: 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLS 768
+KV L L + ++ WV+DFP+F G L + HHPFT P L
Sbjct: 411 -----LKVGKDLGLT--DESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELK 463
Query: 769 SNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKY 824
+ P YD+V+NG E+GGGS+RIH+ ++Q+++ L I + ++ A KY
Sbjct: 464 AAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKY 523
Query: 825 GCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEA 875
G PPH G+A G+DRL +L GT +IRDVIAFPK ++ AP
Sbjct: 524 GTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPT 574
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 3e-11
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIV 53
R+ CG LRLS V + VTLCGW+ +R D+ F +RD G VQV
Sbjct: 2 RTEYCGQLRLSHVGQQVTLCGWVNRRR-DLGSLIFIDMRDREGIVQVFF 49
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 297 bits (764), Expect = 1e-90
Identities = 101/212 (47%), Positives = 132/212 (62%), Gaps = 16/212 (7%)
Query: 300 EVIASNITVLNKADVNIPFHI------KNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSK 353
EV S + VL +A PF + + +A E+LRLK+RYLD R MQ NLR R +
Sbjct: 91 EVELSALEVLAEAKT-PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHR 149
Query: 354 FLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLVQSPQQLKQLL 411
+ +FL FV+VETP L K TP GAR+F+VP P FY+L QSPQ KQ+L
Sbjct: 150 VIKAIWDFLDRE-GFVQVETPFLTKSTPEGARDFLVPYRHE-PGLFYALPQSPQLFKQML 207
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLN 467
MV +DRYFQIARC+RDE R DRQP+FTQLD+E+SF +DV+ L E L+ + L
Sbjct: 208 MVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALG 267
Query: 468 IP-TRTFSRISYNDAISLYGSDKPDLRYDCKI 498
+ F R+SY +A+ YGSDKPDLR+ ++
Sbjct: 268 VELPLPFPRLSYEEAMERYGSDKPDLRFGLEL 299
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 6e-68
Identities = 94/256 (36%), Positives = 134/256 (52%), Gaps = 28/256 (10%)
Query: 631 TNKKITEYKNLAKK------AFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENL 684
+ K++ E + +AK+ A+ +V++ ++ + K L E
Sbjct: 330 SRKEVAELEEVAKRHKAQGLAW-------ARVEEG-GFSGGVAKFLEP-VREALLQATEA 380
Query: 685 EEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPS 744
GD ++ G ++ + LG +R ++ + L L + F WVVDFPL
Sbjct: 381 RPGDTLLFVAGPRKVAATALGAVR-----LRAADLLGL---KREGFRFLWVVDFPLLEWD 432
Query: 745 -DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQES 803
+ HHPFT PHPED LL +P VR L YDLVLNG E+GGGSIRIH LQ
Sbjct: 433 EEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQAR 492
Query: 804 ILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859
+ L I + ++A +YG PPHGGIA G+DRL++++ G+ SIR+VIAFPK
Sbjct: 493 VFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNK 552
Query: 860 GGKDHLSGAPCDIPEA 875
GKD L+GAP +PE
Sbjct: 553 EGKDPLTGAPSPVPEE 568
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIV 53
R+H G+LR + V + V L GW+ +R D+ F LRD G VQ++
Sbjct: 3 RTHYAGSLRETHVGEEVVLEGWVNRRR-DLGGLIFLDLRDREGLVQLVA 50
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 182 bits (462), Expect = 3e-52
Identities = 81/205 (39%), Positives = 118/205 (57%), Gaps = 3/205 (1%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 145
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAGI
Sbjct: 31 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGI 90
Query: 146 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 205
GRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE YD
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYD 148
Query: 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 265
VIWIQWV+ + D+ + +FL CK L NGII+IKDN+A DD DSSV R L
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILDDVDSSVCRDLDV 207
Query: 266 FCLLFSKANLKCVKSEKGEFSPMDL 290
+ A L + E+ E P ++
Sbjct: 208 VRRIICSAGLSLLAEERQENLPDEI 232
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-47
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 9/205 (4%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 145
Y + EY+ VP T+ G+L G + D+DI+ S F++SL G +R LD GAGI
Sbjct: 50 YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGI 104
Query: 146 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 205
GRI+K LL K + DLLE +E+AK E+ + K ++ YD
Sbjct: 105 GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP--NTYD 160
Query: 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 265
+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS+ RS
Sbjct: 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220
Query: 266 FCLLFSKANLKCVKSEKGEFSPMDL 290
+ LF+++ ++ VK E P DL
Sbjct: 221 YKRLFNESGVRVVKEAFQEEWPTDL 245
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A IT+L+KA +P + KA D RL+ R LD R EMQ ++ +S L R
Sbjct: 86 ELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFR 145
Query: 360 EFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFY----SLVQSPQQLKQLLMVG 414
E L F+E+ TP + T GGA+ F V ++ L QSPQ K+ LM G
Sbjct: 146 ETL-YKEGFIEIFTPKIIASATEGGAQLFPV------IYFGKEAFLAQSPQLYKE-LMAG 197
Query: 415 SVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLN------ 467
V+R F++A +R E + EF +D+E++F +DVM+L+E++L +
Sbjct: 198 VVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEG 257
Query: 468 ------------IPTRTFSRISYNDAISL 484
R+ Y +AI +
Sbjct: 258 KEELKILNYEPPEVKIPIKRLKYTEAIEI 286
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-20
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
PF T+ E+ L S +DL+ EI GS R H E+ E L ++
Sbjct: 328 PFYTKSKSENPELSES---------FDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPE 378
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
S + ++ F YG PPH G +G+ RLM +L G QS+++++ FP
Sbjct: 379 SFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFP 421
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVP 54
RSH + K V GW+ R F +LRD G QV+V
Sbjct: 3 RSHFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVD 51
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNK-AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRT 358
EV A + VL+ A P I A D L++RY+ R + + L+ ++ +
Sbjct: 76 EVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGF 135
Query: 359 REFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVD 417
R +L +DF E+ TP + + GG+ F V E + L QSPQ KQ +MVG +
Sbjct: 136 RRYL-DRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAY--LAQSPQLYKQ-IMVGVFE 191
Query: 418 RYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-DDVMRLIEELLCYCLN-------- 467
R +++A +R E R E+ LD+E+ F +D+MRL E LL L
Sbjct: 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGD 251
Query: 468 ----------IPTRTFSRISYNDAISL 484
+ R+++ +A +
Sbjct: 252 EIRLLGATWPSFPQDIPRLTHAEAKRI 278
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-18
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
+DL+ G EI G RIH E L ++ + ++ FKYG PPHGG A+G +R
Sbjct: 337 FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAER 396
Query: 839 LMSILCGTQSIRDVIAFP 856
L L G ++R AFP
Sbjct: 397 LTQKLLGLPNVRYARAFP 414
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-25
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E++ I VLN+A+ +P KA+ D RL +R++D R PE+ + RS R
Sbjct: 89 EILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVR 148
Query: 360 EFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
+F F+E+ TP + T GG F + E + F L QSPQ KQ++M +DR
Sbjct: 149 DFF-HENGFIEIHTPKIIATATEGGTELFPMKYFEEDAF--LAQSPQLYKQIMMASGLDR 205
Query: 419 YFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLN--------- 467
++IA +R E R E +D E++F ++VM +E L+ + +N
Sbjct: 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKE 265
Query: 468 ---------IPTRTFSRISYNDAISL 484
P F R+SY+ A+ +
Sbjct: 266 LDILNFELEEPKLPFPRVSYDKALEI 291
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-20
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
PF + + + +DL G EI G R H ++ + +
Sbjct: 337 PFYIMKYDNKPEICRA---------FDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE 387
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
S + ++AF+YG PPHGG LG +RL+ + +IR+VI FP
Sbjct: 388 SFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFP 430
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVP 59
R+H + + V + GW+ + F +RD G VQ+ P +V
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVD 56
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-24
Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 51/280 (18%)
Query: 244 VASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIA 303
V + + SL ++ + +K V + +L E+
Sbjct: 71 VKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNL---------EIHI 121
Query: 304 SNITVLNKADVNIPFHIKNYNKAKE------------DLRLKHRYLDFRFPEMQHNLRFR 351
+ I +++ +P +++ ++++ D RL +R +D R Q R +
Sbjct: 122 TKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQ 181
Query: 352 SKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQL 410
+ RE+L + F EV TP L + GG+ F V + + L QSPQ KQ
Sbjct: 182 AGVCELFREYL-ATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQFNKQQ 238
Query: 411 LMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-DDVMRLIEELLCYC--- 465
L+V +R ++I +R E++ R EFT LD+E++F +V+ + EL +
Sbjct: 239 LIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSE 298
Query: 466 --------------------LNIPTRT-FSRISYNDAISL 484
+P R++Y + I +
Sbjct: 299 LPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEM 338
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-21
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSE-LQESILHF-LNIE 811
PF T P P + +S YD + G EI G+ RIH LQE + L+ E
Sbjct: 384 PFYTMPDPANPKYSNS---------YDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPE 434
Query: 812 TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
L+ F YGCPPH G +G++R++ ++IR FP
Sbjct: 435 DPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFP 479
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 27/211 (12%)
Query: 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
K++ + + + Y K +D RL +R LD R R +S
Sbjct: 194 GKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGL 253
Query: 358 TREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSV 416
REFL T + FVE+ TP L + GG+ F V + + L QSPQ KQ+ ++G
Sbjct: 254 FREFL-TSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAY--LAQSPQLYKQMAIMGDF 310
Query: 417 DRYFQIARCYRDESTRPDRQ-PEFTQLDIELSF-TTRDDVMRLIEELLCY---------- 464
+ F++ +R E++ R EF LDIE+ + + ++E+L +
Sbjct: 311 RKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFP 370
Query: 465 -----------CLNIPTRTFSRISYNDAISL 484
++ R F R++Y +AI +
Sbjct: 371 DELKVIRKQYPFEDLIYRPFLRLTYKEAIEM 401
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 2e-20
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
PF T P +D + +S YD+ + G EI G+ RIH E ++ +
Sbjct: 447 PFYTMPDIDDPNYSNS---------YDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPA 497
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+L+ I++F++G PH G +G++R+ + G +IR V FP
Sbjct: 498 TLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFP 540
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 40/210 (19%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ + V+ ++ +++ I + ++++R++ R Q L+ RS+ R
Sbjct: 110 EMQVTEWKVIGESPIDLENIINK--DSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFR 167
Query: 360 EFLATHRDFVEVETPTLFKRTP----GGAREFVVPTHEPNKFY----SLVQSPQQLKQLL 411
++ F E++ PT+ GG+ F + +++ L QS Q L
Sbjct: 168 KYYH-DNHFTEIQPPTI---VKTQCEGGSTLFKL------QYFNEPAYLTQSSQ-LYLES 216
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQP-EFTQLDIELSFTTRDDVMRLIEELLCYC----- 465
++ S+ + F + YR E +R R E+ L+ EL F + +D++ +E+L+C
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVM 276
Query: 466 -------------LNIPTRTFSRISYNDAI 482
L +PTR F R++Y DAI
Sbjct: 277 AVHGDKIRKMNPHLKLPTRPFKRMTYADAI 306
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
F P L S L + G+ EI GGS+RI + + +
Sbjct: 354 AFYMSKVPGHPDLTESVDLLMPGV--------GEIVGGSMRIWNYDELMGAYKANGLNPD 405
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
Q KYG PHGG LG++RL+ L G IR V +P
Sbjct: 406 PYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYP 448
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 21 VDKTVTLCGWLQNQRVD----MFALLRDAYGQVQVIVPNHQVPNIYRTSTL 67
K VT GW + R +F LRD G Q ++ ++ + L
Sbjct: 29 EGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLL 79
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 6e-20
Identities = 55/211 (26%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+IA ++ A +A D L +R+L R LR R+ R
Sbjct: 85 ELIADFWKIIGNAP-PGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMR 143
Query: 360 EFLATHRDFVEVETPTLFKRTPGGARE-FVVPTHEPNKFY----SLVQSPQQLKQLLMVG 414
E + +VEV PTL + G F + ++ L QS Q + +
Sbjct: 144 EHFY-NAGYVEVAPPTLVQTQVEGGSTLFNL------DYFGEQSFLTQSSQLYLET-CIP 195
Query: 415 SVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYC-------- 465
++ F IA+ YR E +R R E+ ++ E F T DD+M IEEL+C
Sbjct: 196 TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADE 255
Query: 466 ------------LNIPTRTFSRISYNDAISL 484
P R F R+ Y DAI
Sbjct: 256 EAKKLLEHINPKFQPPERPFLRMEYKDAIKW 286
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-13
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
F Q +D L S L + G+ EI GGS+RI + + I+
Sbjct: 333 AFYMQRDAQDNTLTESVDLLMPGV--------GEIVGGSMRIWKFDELSKAFKNVEIDPK 384
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+ YG PHGG LG++R + L T IRDV +P
Sbjct: 385 PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 427
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 7e-20
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 43/215 (20%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV + V+ P +A +L L +R+L R P+ ++ + +M R
Sbjct: 89 EVHVEKLEVIQAVS-EFPIPENP-EQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAR 146
Query: 360 EFLATHRDFVEVETPTLFKRTP----GGAREFVVPTHEPNKFY----SLVQSPQQLKQLL 411
E+L + EV P L GGA F + K++ L QS Q +
Sbjct: 147 EWLL-KDGWHEVFPPIL---VTGAVEGGATLFKL------KYFDKYAYLSQSAQLYLEAA 196
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYC----- 465
+ +++ + + +R E +R R EF L++E ++ D+M++ EEL+ Y
Sbjct: 197 I-FGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTL 255
Query: 466 ----------------LNIPTRTFSRISYNDAISL 484
L F RISY++AI +
Sbjct: 256 ELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDI 290
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 8e-14
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 787 EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGT 846
EI GGS R + + + ++ + + +YG PH G LG++RL++ +
Sbjct: 357 EIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKL 416
Query: 847 QSIRDVIAFP 856
IR FP
Sbjct: 417 DHIRWAALFP 426
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 20/173 (11%)
Query: 335 RYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP----TLFKRTPGGAREFVVP 390
++ E+ L ++K L +F F + P A E + P
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEP 60
Query: 391 THEP--NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ---PEFTQLDIE 445
L S KQL + + + F ++ R ES + D EFTQLD E
Sbjct: 61 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFE 120
Query: 446 LSFTTRDDVMRLIEELLCYCLN----------IPTRTFSRISYNDAISLYGSD 488
+ +D+MRLIE L+ T+ F Y++ + +GSD
Sbjct: 121 VERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSD 173
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 787 EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCG 845
E+ G R E + + + S + ++ K G P G +G++RL+ + G
Sbjct: 215 EVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVG 274
Query: 846 TQSIRDVIAFP 856
+ I +V FP
Sbjct: 275 AKHIAEVQPFP 285
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 3e-19
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTHEPNKFYSLVQ-- 402
NL R+ + R F A R +EVETP + + T F T +S
Sbjct: 35 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLVPFE--TRFVGPGHSQGMNL 91
Query: 403 ----SPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIELSFTTRDDVM 455
SP+ +K+LL V FQ+ R +R+E PEFT L+ +M
Sbjct: 92 WLMTSPEYHMKRLL-VAGCGPVFQLCRSFRNEEMGRY--HNPEFTMLEWYRPHYDMYRLM 148
Query: 456 RLIEELLCYCLNIPTRTFSRISYNDAISLY------GSDKPDLRYDCK 497
+++LL L+ P +SY A Y +DK LR
Sbjct: 149 NEVDDLLQQVLDCP--AAESLSYQQAFLRYLEIDPLSADKTQLREVAA 194
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
I+A K G P G+ALG+DRL+ + G +++ +VIAF
Sbjct: 304 IEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFS 341
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 4e-15
Identities = 60/445 (13%), Positives = 134/445 (30%), Gaps = 125/445 (28%)
Query: 9 RSHTCGALRLSDV-DKTVTLCGWLQNQRVDMFALLRDAYGQVQVIV--PNHQVPNI---Y 62
+ + L L +V + + F L ++++ QV +
Sbjct: 241 KPYENCLLVLLNVQNAKA----------WNAFNL------SCKILLTTRFKQVTDFLSAA 284
Query: 63 RTSTLASLPIFPYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDL--DIQTSNQ 120
T+ ++ T EV L+ DL ++ T+N
Sbjct: 285 TTTHISLDHHSMTLTP--------DEVKSLLLKY-------LD--CRPQDLPREVLTTNP 327
Query: 121 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180
S+ + D G+ + KH + L + + +
Sbjct: 328 RRLSIIAESIRD-----------GLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYR- 372
Query: 181 CDKLDKCY-NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLC--KQILNKNGI 237
K + + + F P +I ++ + W + + D++ +N ++ K
Sbjct: 373 -----KMFDRLSV--F-PPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQP- 421
Query: 238 IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV-KSEKGEFSPMDLWEDWGL 296
E + + S+ L N + +S ++ ++ L
Sbjct: 422 ----------------KESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 297 LSKEVIASNITVLNKADVN-----IPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFR 351
+ D I H+KN + + +LDFRF ++ +R
Sbjct: 465 I-----------PPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHD 510
Query: 352 SKFLMRTREFLAT------HRDFVEVETPTLFKRTPGGAREFVVPTHEPN----KFYSLV 401
S + L T ++ ++ P ++R +F +P E N K+ L+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAILDF-LPKIEENLICSKYTDLL 568
Query: 402 QSPQQLKQLLMVGSV--DRYFQIAR 424
+ + ++ + + Q+ R
Sbjct: 569 RIALMAED----EAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 1e-10
Identities = 92/597 (15%), Positives = 162/597 (27%), Gaps = 156/597 (26%)
Query: 155 KHFDKIDLLEQSSKFIEQAK-EEILKDCDKLDKCYNV----------GIQDFKPEDLNIK 203
+FD D+ + + + + + I+ D + + +Q F E L I
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG-----VKN---EYDDE 255
Y + + + + L + + K NV+ ++ E
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 256 D----------------SSVVRSLPQFCLLFSKA---NLKCVKSEKGEFSPMDLWEDWGL 296
V S C + K NLK S + + L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----QKL 205
Query: 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRY------LD-FRFPEMQHNLR 349
L + I N T + NI I + L Y L + + +
Sbjct: 206 LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 350 FRSKFLMRTR-----EFL--ATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQ 402
K L+ TR +FL AT TP + ++ K+ L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLL------KY--LDC 313
Query: 403 SPQQLKQLLMVGSVDRYFQIARCYRDESTRPD--RQPEFTQLD--IELSFT--TRDDVMR 456
PQ L + ++ + R IA RD D + +L IE S + +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 457 LIEEL--LCYCLNIPTRTFSRI----SYNDAI---------SLYGSDKPDLRY---DCKI 498
+ + L +IPT S I +D + SL + I
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--I 431
Query: 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSY-FIREYCY 557
+ +K + L R ++ Y + +
Sbjct: 432 YLELKVKLE----NEYALHRS--------------------------IVDHYNIPKTFDS 461
Query: 558 QGPRSVGCDLIIF-HIQFFSCLHTTQSEICSRA--FRTTVL---F---QIKNVDNFRSNR 608
D + HI H E R FR L F +I++ +
Sbjct: 462 DDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 609 SETKSSGEDV--YRILILPKDLD---------------STNKKITEYKNLAKKAFND 648
++ + + Y+ I D N ++Y +L + A
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 6e-08
Identities = 86/649 (13%), Positives = 160/649 (24%), Gaps = 223/649 (34%)
Query: 334 HRYLDFRFPEMQHNLR-----FRSKFLMR---------TREFLATH--RDFVEVETP--- 374
H ++DF E Q+ + F F+ + L+ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 375 ------TLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY-FQIARCYR 427
TL + ++FV N Y + SP + +Q Y Q R Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 428 DESTRPD----RQPEFTQL----------------------------------DIE---- 445
D R + +L ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 446 -----LSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISL-YGSDKPDLRY----- 494
L+ + ++E L I SR ++ I L S + +LR
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 495 ---------D--------------CKIMIAIKEQP---PWPSGYPTRLPRRAGEPGFDSR 528
CKI++ + + + T +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 529 RGPSFFGSVLGV-WGALSLMSSYFIREYCYQGPRSVGCDLI-------IFHIQFFSCLHT 580
S L L RE PR + +I + + H
Sbjct: 302 EVKSLLLKYLDCRPQDLP-------REVLTTNPRRLS--IIAESIRDGLATWDNW--KHV 350
Query: 581 TQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRIL-ILPKDLDSTNKKITEYK 639
++ + ++ ++ E + ++ L + P I
Sbjct: 351 NCDKL-TTIIESS-------LNVLEPA--EYR----KMFDRLSVFPPSA-----HIPT-- 389
Query: 640 NLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEG---------DLI 690
+ + W + + K + V + +E+ +
Sbjct: 390 ---------------ILLSLI-WFD-VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 691 VVSWGKQEDVLSLLGMIRSESHKIKVKN-TLPLEFDNPKSFSIFWVVDFPLFLPSDSGTL 749
+ K E+ +L H+ V + +P FD+ L P
Sbjct: 433 LELKVKLENEYAL--------HRSIVDHYNIPKTFDSDD-----------LIPPYLDQYF 473
Query: 750 ES--AHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGS--------------- 792
S HH HPE L L+ R L + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 793 IRIHS---SELQESILHFL-NIETSSLQH----MIQ-AFKYGCPPHGGI 832
I + L +IL FL IE + + +++ A I
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA---EDEAI 579
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 4e-15
Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 57/255 (22%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++ GE S + S+ L KA +P +H +K+ + R + R
Sbjct: 120 KTKVGELS--------------IKVSSYEFLTKALRPLPEKYHGLKD-----IEQRYRQR 160
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
YLD PE + RS + R +L ++EVETP + GG AR F+ TH
Sbjct: 161 YLDLIMNPESKKTFITRSLIIQSMRRYL-DSHGYLEVETPMM-HAVAGGAAARPFI--TH 216
Query: 393 EPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIE 445
N Y + + + LK+L+ VG +++ ++I R +R+E STR PEFT L++
Sbjct: 217 H-NALDMTLY-MRIAIELHLKRLI-VGGLEKVYEIGRVFRNEGISTR--HNPEFTMLELY 271
Query: 446 LSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLY-GSDK 489
++ D+M+L E L+ + I T + R+ DAI Y G D
Sbjct: 272 EAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDF 331
Query: 490 PDLRYDCKIMIAIKE 504
D + KE
Sbjct: 332 WRQMSDEEARELAKE 346
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
++A +YG PP GG+ +G+DRL+ +L + SIRDV+ FP
Sbjct: 451 LEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 8e-15
Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 57/253 (22%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
++ KGE S V + + +L KA +P FH + + ++ R + R
Sbjct: 150 RTNKGELS--------------VKCTQLRLLAKALRPLPDKFHGLAD-----QETRYRQR 190
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
Y+D PE + R R+K + R+F+ DF+EVETP L PGG A+ FV TH
Sbjct: 191 YVDLIVTPETRTTFRARTKAIASIRKFM-GDADFMEVETPML-HPIPGGAAAKPFV--TH 246
Query: 393 EPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIE 445
N + + L +P+ LK+L+ VG +R F+I R +R+E S R PEFT ++
Sbjct: 247 H-NALDMEMF-LRIAPELYLKRLI-VGGFERVFEINRNFRNEGVSPR--HNPEFTMMEFY 301
Query: 446 LSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLY-GSDK 489
++T +M E L+ I + F R++ AI Y S
Sbjct: 302 AAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYT 361
Query: 490 PDLRYDCKIMIAI 502
D + +
Sbjct: 362 DGQLSDDAFLRSE 374
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-09
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
I+A +YG PP GG +GIDRL+ +L + +IRDV+ FP
Sbjct: 486 IRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-14
Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 58/256 (22%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++ GE S + + + +L KA +P FH +++ +++R + R
Sbjct: 129 KTQTGELS--------------IHCTELRLLTKALRPLPDKFHGLQD-----QEVRYRQR 169
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
YLD + + RSK L R+F+ R F+EVETP + + PGG AR F+ TH
Sbjct: 170 YLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVETPMM-QVIPGGASARPFI--TH 225
Query: 393 EPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIE 445
N Y L +P+ LK+L+ VG +R F+I R +R+E S R PEFT +++
Sbjct: 226 H-NALDLDMY-LRIAPELYLKRLV-VGGFERVFEINRNFRNEGISVR--HNPEFTMMELY 280
Query: 446 LSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLY--GSD 488
+++ D++ L E L + + F +++ +AI Y +D
Sbjct: 281 MAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETD 340
Query: 489 KPDLRYDCKIMIAIKE 504
DL +
Sbjct: 341 MADLDNFDAAKALAES 356
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+ A +YG PP G+ +GIDR++ + + +IRDVI FP
Sbjct: 461 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-13
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 59/209 (28%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++KGE S +I IT+L+ +P +K+ ++ R + R
Sbjct: 122 KTKKGELS--------------IIPYEITLLSPCLHMLPHLHFGLKD-----KETRYRQR 162
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
YLD ++ RSK + R FL F+E+ETP + PGG A+ F+ T+
Sbjct: 163 YLDLILNDFVRQKFIIRSKIITYIRSFL-DELGFLEIETPMM-NIIPGGAVAKPFI--TY 218
Query: 393 --------------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDE--STRPDRQ 436
E Y K L+ VG +DR ++I R +R+E
Sbjct: 219 HNELDMNLYMRIAPE---LY--------HKMLV-VGGIDRVYEIGRQFRNEGIDLT--HN 264
Query: 437 PEFTQLDIELSFTTRDDVMRLIEELLCYC 465
PEFT + +++ D+M + E+++
Sbjct: 265 PEFTTCEFYMAYADYHDLMEITEKMVSGM 293
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 9e-09
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
A +YG PP G +GIDR+ L + +I++V+ FP
Sbjct: 466 CTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-12
Identities = 36/214 (16%), Positives = 65/214 (30%), Gaps = 28/214 (13%)
Query: 87 SEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIG 146
+E + T D + G L + + VL+ G G G
Sbjct: 3 TEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDV-----VNKSFGNVLEFGVGTG 57
Query: 147 RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 206
++ L + +E S + AKE KL K +++ DF ++ D
Sbjct: 58 NLTN-KLLLAGRTVYGIEPSREMRMIAKE-------KLPKEFSITEGDFLSFEVPTSIDT 109
Query: 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV---------------ASGVKNE 251
I + + D++ + Q+LNK G I+ D + G
Sbjct: 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
Query: 252 YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEF 285
+D + +P +F + F
Sbjct: 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHF 203
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
P ++L++G G G ++ +LA FD +D + S + +A + + +
Sbjct: 42 PAGAKILELGCGAGYQAEAMLAAGFD-VDATDGSPELAAEASRRLGRPVRTML------F 94
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
D YD +W L+ + +++ L L + L G+
Sbjct: 95 HQLDAID---AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 25/165 (15%)
Query: 87 SEVTEYYSNVPPT----IDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVG 142
SE+ + V + + + + ++ +LD+G
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVD-----------TENPDILDLG 52
Query: 143 AGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 201
AG G +S +L+ K+ + L++ S K +E AK + V + +
Sbjct: 53 AGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN-------RFRGNLKVKYIEADYSKYD 105
Query: 202 I--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
KYD++ + + DED + IL ++GI I D V
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 5e-10
Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
+ + VL++ +G G ++ L+ D++ L+ S++ I +A L + + +
Sbjct: 43 AGNIRGDVLELASGTGYWTR-HLSGLADRVTALDGSAEMIAEAGRHGLDNVE-----FRQ 96
Query: 191 G-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247
+ D+ P+ ++D ++ L + D+ F + + G++ D
Sbjct: 97 QDLFDWTPDR---QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 6e-10
Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK------- 159
+S+ + ++ L + + + ++L +G G G I +L+K +
Sbjct: 25 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84
Query: 160 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-------KPEDLNIKYDVIWIQWV 212
+++E S++ I + KE + K + + + + + K+D I + +
Sbjct: 85 NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144
Query: 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS--------GVKNEYDDEDSSVVRSLP 264
L ++ +DI L +L N ++I S + + +D +
Sbjct: 145 LYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD 202
Query: 265 QFCLLFSKANLKCVKSEK 282
+ LK +
Sbjct: 203 DLTQMLDNLGLKYECYDL 220
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 6/167 (3%)
Query: 76 FTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGK 135
F + E+ E+Y+++ S ++ + +N F+ + + + G
Sbjct: 10 FRKDQAMEGKKEEIREHYNSIRERGR-ESRQRSKTINI--RNANNFIKACLIRLYTKRGD 66
Query: 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195
VLD+G G G + ++ + I A+ + +
Sbjct: 67 -SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG 125
Query: 196 KPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 240
+ DL ++DVI Q+ + E + + L G I+
Sbjct: 126 RHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-09
Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 27/207 (13%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 145
+V++ YS+ + +L S D D + +LDVG+G
Sbjct: 2 TDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWA---------TGVDGVILDVGSGT 52
Query: 146 GRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI- 202
GR + +L + ++ +++ +E A++ DL+
Sbjct: 53 GRWTGHLASLGHQIEGLEP---ATRLVELARQT-HPSVT-------FHHGTI--TDLSDS 99
Query: 203 --KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV 260
++ + + L+ + ++ L + + G +++ ++ Y ++
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYR 159
Query: 261 RSLPQFCLLFSKANLKCVKSEKGEFSP 287
LP+ A + S P
Sbjct: 160 WPLPELAQALETAGFQVTSSHWDPRFP 186
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 9e-09
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175
+T ++ L ++ K PG + LD+G G GR S YL A +D +D ++++ I +
Sbjct: 19 RTHSEVLEAV---KVVKPG--KTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVER 72
Query: 176 EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 235
+K + LD + + D + +YD I VLMF+ + I + ++
Sbjct: 73 --IKSIENLDNL-HTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 129
Query: 236 GIIII 240
G +I
Sbjct: 130 GYNLI 134
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 124 SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK 183
+VLD+G G GR S YL + + + + I E K+
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYL-SLLGYDVTSWDHNENSIAFLNETKEKENLN 168
Query: 184 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + + D ++ YD I V MF+ E + + K+ N G +I
Sbjct: 169 I----STALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 27/178 (15%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDK 183
+ +VLD+ A G + + D +E AKE +
Sbjct: 162 NKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVD----WASV---LEVAKE-NARIQGV 213
Query: 184 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ + + D YD++ + L + L K L G +I+ D
Sbjct: 214 ASRYHTIA-GSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272
Query: 244 VASGVKNE------YDDE-----DSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDL 290
+ + + + + + ++ +FS A + + +
Sbjct: 273 IPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
G RVLD+G G G + + + I + + + I+ + K + +
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV-DINEDMIKFCEG-------KFNVVKS 88
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
I+ K D + I + + E + + L+LC + + I+I
Sbjct: 89 DAIEYLKSLPDK-YLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVI 138
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 37/200 (18%)
Query: 128 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187
+L++G+ G + L +HF+ I +E S + I A+ +L
Sbjct: 36 AFTPFFRPGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAISHAQG-------RLKDG 87
Query: 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFL-NLCKQILNKNGIIII---- 240
F+ L +YD I VL +L+ +D + L + L + G + +
Sbjct: 88 ITYIHSRFEDAQLPRRYDNI----VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143
Query: 241 ---KDNVASGVKNEYDDEDSSVVR----------SLPQFCLLFSKANLKCVKSEKGEFSP 287
+ + +L S+A L+ F
Sbjct: 144 ANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKA 203
Query: 288 -----MDLWEDWGLLSKEVI 302
D +LSKE +
Sbjct: 204 LANFQWDQILQTDILSKEYL 223
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
K VLD+G G + + ++ ++ +E + EQAKE K
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKE----------KLD 75
Query: 189 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 240
+V + D + D+ ++D + + +L+ D + K + +NG+I+
Sbjct: 76 HVVLGDIETMDMPYEEEQFDCV----IFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 136 TRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
+ + D+G G G + LA H +D S FI+ + L V
Sbjct: 48 SLIADIGCGTGGQTMV-LAGHVTGQVTGLDF---LSGFIDIFNRNARQ--SGLQN--RVT 99
Query: 192 IQDFKPEDL---NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
+DL N + D+IW + + I E + LN ++ L K G + + +
Sbjct: 100 GIVGSMDDLPFRNEELDLIWSEGAIYNIGFE---RGLNEWRKYLKKGGYLAVSE 150
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 5e-08
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194
+VLD+ G+G S L F+ +D+ S I +A+E ++ + VG D
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDI---SEDMIRKAREYAKSRESNVE--FIVG--D 93
Query: 195 FKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251
L+ + +D + ++ ++ + +++L +G I+ +
Sbjct: 94 A--RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 252 YDDE 255
+
Sbjct: 152 LKES 155
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 28/177 (15%), Positives = 71/177 (40%), Gaps = 26/177 (14%)
Query: 103 MLNGYSSISDL----------DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYL 152
M Y+ +++ ++ F+ ++ + + RVLD+ G G +
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVR-RVLDLACGTGIPTLE- 58
Query: 153 LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQW 211
LA+ ++ L+ + + A+ + + K++ + G + + ++ ++D + + +
Sbjct: 59 LAERGYEVVGLDLHEEMLRVARRKAKERNLKIE--FLQGDVLEIAFKN---EFDAVTMFF 113
Query: 212 -VLMFILDEDIIKFLNLCKQILNKNGIIII-------KDNVASGVKNEYDDEDSSVV 260
+M+ +ED+ K + + L G+ I V NE E+ V+
Sbjct: 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 112 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE 171
D ++ L + P + +LDV G G ++ K F LE S +
Sbjct: 20 GKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEH-FTKEFGDTAGLELSEDMLT 76
Query: 172 QAKEEILKDCDKLDKCYNVG--IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNL 227
A++ + + D + L K+ + + + ++ E++ +
Sbjct: 77 HARK----------RLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVAS 126
Query: 228 CKQILNKNGIIII 240
+ L G++++
Sbjct: 127 FAEHLEPGGVVVV 139
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFI 170
+D+D + + F+ +++ LD+ G G +++ L K + ++ S + +
Sbjct: 16 ADVDYKKWSDFIIEKC--VENNLVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEML 72
Query: 171 EQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLC 228
+A+ + K + QD ++N K+D+I +I+D +D+ K+
Sbjct: 73 SEAENKFRSQGLKP----RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAV 128
Query: 229 KQILNKNGIIII-------KDNVASGVKNEYDDEDSSVVR 261
L + G+ I V YDD++
Sbjct: 129 SNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 128 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187
+S+ K VLD GAG + + K +E S +++A+ ++ KL+
Sbjct: 18 CNESNLDK-TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN-- 74
Query: 188 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
+ G D L K ++ + + D+ + ++ K++L G+ I
Sbjct: 75 ISKG--DI--RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF 128
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 26/185 (14%), Positives = 67/185 (36%), Gaps = 13/185 (7%)
Query: 58 VPNIYRTSTLASLPIF-PYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQ 116
VP ++ L P+ P+ + + ++Y G + IQ
Sbjct: 15 VPRGSMSNQLERGPVRTPHADVLLASVGERGVLCDFYDE----------GAADTYRDLIQ 64
Query: 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEE 176
++ + ++ P VL++ AG+GR++ L ++ + LE S+ + ++
Sbjct: 65 DADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKR 123
Query: 177 ILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKN 235
+ + + + D L+ ++ + I + + + D ++ L
Sbjct: 124 LAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPG 183
Query: 236 GIIII 240
G ++
Sbjct: 184 GKFLL 188
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 24/147 (16%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
R+LD+G G+ + + + D L Q +E +++ +
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD----LPQQ---LEMMRKQT-AGLSGSE 229
Query: 186 KCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ + G + D+ +D +W+ L +E++I L Q + K+ + I +
Sbjct: 230 RIHGHGA-NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288
Query: 244 VASGVKNEYDDEDSSVVRSLPQFCLLF 270
+ + L Q L F
Sbjct: 289 LWD------RQRYETASYCLTQISLYF 309
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 30/148 (20%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
V+D+ G G +L +H +D + + K I
Sbjct: 178 ARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG--------G 229
Query: 186 KCYNVGIQDF--KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ ++ DV+ + L + + + + ++ G ++I
Sbjct: 230 RVEFFE-KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288
Query: 244 VASGVKNEYDDEDSSVVRSLPQFCLLFS 271
++D R P FS
Sbjct: 289 TM--------NDD----RVTPALSADFS 304
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 112 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE 171
D L++L ++ P +LDV G G ++ LA F ++ LE S+ +
Sbjct: 30 GKDYHREAADLAALV--RRHSPKAASLLDVACGTGMHLRH-LADSFGTVEGLELSADMLA 86
Query: 172 QAKEEILKDCDKLDKCYNVGI--QDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNL 227
A+ + + + D + L ++ + + + + ++ L
Sbjct: 87 IARR----------RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALER 136
Query: 228 CKQILNKNGIIII 240
+ +G++++
Sbjct: 137 FAAHVLPDGVVVV 149
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 141
N + E + Y + G + IS ++ + + LS + + S +VLD+
Sbjct: 16 NNQYTDEGVKVYE--------FIFGENYISSGGLEATKKILSDIELNENS-----KVLDI 62
Query: 142 GAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197
G+G+G Y + + + ID+ S + A E + + +K D
Sbjct: 63 GSGLGGGCMY-INEKYGAHTHGIDI---CSNIVNMANERVSGN----NKI-IFEANDILT 113
Query: 198 EDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------ 250
++ +D+I+ + ++ + E+ K C + L G ++I D A+ +N
Sbjct: 114 KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFK 173
Query: 251 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281
EY + + ++ ++ + + N K V S+
Sbjct: 174 EYVKQRKYTLITVEEYADILTACNFKNVVSK 204
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 126 YCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
+ ++ +PGK R+ D+G G G + LA H++ + ++ S + +E A+E+ ++ +D
Sbjct: 26 WVLEQVEPGK-RIADIGCGTGTATLL-LADHYE-VTGVDLSEEMLEIAQEKAMETNRHVD 82
Query: 186 KCYNVG-IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIII-- 240
+ V +++ + + D I I L ++ D+ + + ++L G ++
Sbjct: 83 --FWVQDMRELELPE---PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137
Query: 241 -----KDNVASGVKNEYDDEDSSVVR 261
+ + +G E SS +
Sbjct: 138 HSPYKMETLFNGKTYATHAEQSSYIW 163
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 30/145 (20%)
Query: 338 DFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL-----FKRTPG---------- 382
E ++ + K F F+E+++P L +R
Sbjct: 69 QIYAEEREN---YLGKLEREITRFFVDR-GFLEIKSPILIPLEYIERMGIDNDTELSKQI 124
Query: 383 --GAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEF 439
+ F + PN + L + + L + + F+I CYR ES + EF
Sbjct: 125 FRVDKNFCLRPMLTPNLYNYLRKLDRALPDPI------KIFEIGPCYRKESDGKEHLEEF 178
Query: 440 TQLDIEL--SFTTRDDVMRLIEELL 462
T L S TR+++ +I + L
Sbjct: 179 TMLVFWQMGSGCTRENLESIITDFL 203
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 7/128 (5%)
Query: 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 173
D + + L G R L G G G + + + L+ S + +A
Sbjct: 48 DQGRATPLIVHLVDTSSLPLG--RALVPGCGGGHDVVAMASPERF-VVGLDISESALAKA 104
Query: 174 KEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 232
E + + ++P + +D+I+ I E + ++L
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPTE---LFDLIFDYVFFCAIEPEMRPAWAKSMYELL 161
Query: 233 NKNGIIII 240
+G +I
Sbjct: 162 KPDGELIT 169
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 18/114 (15%)
Query: 136 TRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
++ D+G G G + + LA + IDL FIE E +K
Sbjct: 48 AKIADIGCGTGGQTLF-LADYVKGQITGIDL---FPDFIEIFNENAVK--ANCADRVKGI 101
Query: 192 IQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
++L + D+IW + + I E + +N + L K G I + +
Sbjct: 102 TGSM--DNLPFQNEELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIAVSE 150
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
++D G G G + +L + ID + +A+E D +
Sbjct: 25 HIVDYGCGYGYLGL-VLMPLLPEGSKYTGIDS---GETLLAEARELFRL--LPYDSEFLE 78
Query: 191 G-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
G + + D KYD+ L+ + L + K G II +
Sbjct: 79 GDATEIELND---KYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFE 126
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
D + VLD+G G G Y K+ ++ S + + +AK + CY
Sbjct: 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRK----TTSPVVCYEQK 97
Query: 192 IQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN----V 244
ED+ I Y+V+ L +I L +G I
Sbjct: 98 ----AIEDIAIEPDAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFT 151
Query: 245 ASGVKNEYDDED 256
A G ++ Y DE
Sbjct: 152 ADGRQDWYTDET 163
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 5e-06
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG- 191
+ R+L +G G +S L F + ++ SS + + +
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQA---CYAHVPQLRWETMD 97
Query: 192 IQDFKPEDLNIKYDVIWIQWVLMFILD-------------EDIIKFLNLCKQILNKNGII 238
++ +DV+ + L +L + + L+ ++L G
Sbjct: 98 VRKLDFPSA--SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155
Query: 239 II 240
I
Sbjct: 156 IS 157
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLD-KCY 188
G RVLDV G G S L+ + F +D S K ++ A +E + +
Sbjct: 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDA---SDKMLKYALKERWNRRKEPAFDKW 111
Query: 189 NVGIQDFKPEDLNI----KYDVIWIQW-VLMFILD-----EDIIKFLNLCKQILNKNGII 238
+ ++ D ++ +D + + D + L ++ G++
Sbjct: 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171
Query: 239 II 240
+I
Sbjct: 172 VI 173
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ 172
+ ++ ++L +++ KK ++D G G G KY L + K+ ++ + +++
Sbjct: 1 MSLERPEEYLPNIFEGKKG-----VIVDYGCGNGFYCKY-LLEFATKLYCIDINVIALKE 54
Query: 173 AKEEILKDCDKLDKCYNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCK 229
KE K D + + I D I + +D ++ K
Sbjct: 55 VKE-------KFDSVITLS------DPKEIPDNSVDFILFANSFHDM--DDKQHVISEVK 99
Query: 230 QILNKNGIIIIKD 242
+IL +G +II D
Sbjct: 100 RILKDDGRVIIID 112
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 7e-06
Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 141
+ + + + D ++ S + ++ + ++ VLDV
Sbjct: 9 KFNWHESAEKKW-------DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA-EVLDV 60
Query: 142 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--------DCDKLDKCYNVGIQ 193
G G G + Y L++ K ++ S I++ KE D L
Sbjct: 61 GCGDGYGT-YKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL--------- 110
Query: 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-- 251
F+ E +++ I L + E+ ++ LN K++L +G I + E
Sbjct: 111 PFENE----QFEAIMAINSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS 164
Query: 252 ----YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDW 294
Y + +F L + K V + + E
Sbjct: 165 YPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV--DGIGVYKRGVNEKM 209
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKC 187
S + L++G G + LA H + ID+ + I +A + K +
Sbjct: 48 SSGAVSNGLEIGCAAGAFT-EKLAPHCKRLTVIDV---MPRAIGRACQR-TKRWSHIS-- 100
Query: 188 YNVG-IQDFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 242
+ I F + +D+I + VL ++ D + ++ ++L G ++
Sbjct: 101 WAATDILQFSTAE---LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLA--KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY- 188
+ + ++D G G G + LL I ++ S K + +A + + +K
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778
Query: 189 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + D + + D+ V+ + ++ +F + ++I+
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF-HPKLLIV 832
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 113 LDIQTSNQFLSSLY-------CQKKSDPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLE 164
++ + + + SL RV+D+G G G + K LL F++I ++
Sbjct: 1 MEEEAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVD 60
Query: 165 QSSKFIEQAKE----EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED 220
S + +E A+E L G ++ + + YD + V+ +
Sbjct: 61 VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFH-GYDAATVIEVIEHLDLSR 119
Query: 221 IIKFLNLCKQILNKNGIIII 240
+ F + + + I+I+
Sbjct: 120 LGAFERVLFEFA-QPKIVIV 138
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 29/165 (17%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
G +++DVG GIG IS +L + L + I+ E + D+
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILN----LPGA---IDLV-NENAAEKGVADR 241
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
+ + D E + D + +L ++ + G ++I D V
Sbjct: 242 MRGIAV-DIYKESYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299
Query: 247 GVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVK 279
+N D S + + ++ + K V
Sbjct: 300 DPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 344
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKE----EILKDCDKLDK 186
+V+D+G G G + LL K F++I ++ S +E+AK+ + L + +
Sbjct: 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239
++ + + YD + V+ + + + F + + +I+
Sbjct: 87 SLFQSSLVYRDKRFS-GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
P ++LD G G GRI YL + D DL I+ AK+ D + + V
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDL---DPILIDYAKQ----DFPEAR--WVV 95
Query: 191 G-IQDFKPEDLNIKYDVIWIQWVLM-FILDEDIIKFLNLCKQILNKNGIIII 240
G + + + +D+I +M F+ ++ L + L +G +I
Sbjct: 96 GDLSVDQISE--TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 10/136 (7%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
+P ++D G G +K+ L++ F + +D+ S +E A +E
Sbjct: 55 NPEL-PLIDFACGNGTQTKF-LSQFFPRVIGLDV---SKSALEIAAKENTAANISYRLLD 109
Query: 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248
+ + I I+++ I E + +L K G + + + +
Sbjct: 110 GLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI 169
Query: 249 KNEYDDEDSSVVRSLP 264
++ + LP
Sbjct: 170 --DFFNSLLEKYGQLP 183
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
D+G G G ++ LL + ID +E+A + L + + +
Sbjct: 36 NGYDLGCGPGNSTE-LLTDRYGVNVITGIDS---DDDMLEKAADR-LPNTN-----FGKA 85
Query: 192 -IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ +KP K D+++ V ++ D + L+ L G++ +
Sbjct: 86 DLATWKPAQ---KADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAV 130
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 26/174 (14%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
G + ++DVG G GR + +++K+ K I +++++ L +VG
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYP--------LIKGINFDLPQVIENAPPLSGIEHVGG 259
Query: 193 QDFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251
F + + D + ++ V DE I+FL+ C + L+ NG +II + + N
Sbjct: 260 DMFAS----VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNT 315
Query: 252 YDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKGEFSPMDLWE 292
++ R+ Q+ L + + F+ + + E
Sbjct: 316 SEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 369
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 34/163 (20%)
Query: 137 RVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
+DVG G G ++K +L D E S + A + L ++
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLD----REGS---LGVA-RDNLSSLLAGERVSL 221
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK 249
VG D +++ D+ + ++ + + ++ L C++ + +G +++ +
Sbjct: 222 VG-GDML-QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI---- 275
Query: 250 NEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVK 279
+ + SV+ R+ + L + +
Sbjct: 276 SASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 16/105 (15%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDF 195
+LD+G G G++++ +A+ ++ + ++ IE+A++ ++V ++F
Sbjct: 60 FILDLGCGTGQLTE-KIAQSGAEVLGTDNAATMIEKARQN-YPHLH-----FDVADARNF 112
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + D ++ +L ++ + + + Q L G +
Sbjct: 113 RVDK---PLDAVFSNAMLHWVKEPE--AAIASIHQALKSGGRFVA 152
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 30/165 (18%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
VLDVG G G + + + + L E+A+ D D+
Sbjct: 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVE----LAGP---AERAR-RRFADAGLADR 233
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
DF + L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 234 VTVAE-GDFF-KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA-D 290
Query: 247 GVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVK 279
+ D S+++ R+ + L A L
Sbjct: 291 VEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
G R++D+G G G ++ +DL S K + +A+ Y
Sbjct: 43 GGL-RIVDLGCGFGWFCRWAHEHGASYVLGLDL---SEKMLARARAA----GPDTGITYE 94
Query: 190 VGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
D + L++ +D+ + L ++ ED+ + Q L+ G +
Sbjct: 95 RA--DL--DKLHLPQDSFDLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTE 145
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 18/186 (9%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLE 164
I + ++T S L + LD+GAG G +++ L + F ID L
Sbjct: 55 DQDEIREASLRTDEWLASELAMTGVLQRQA-KGLDLGAGYGGAARF-LVRKFGVSIDCLN 112
Query: 165 QSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDI 221
+ ++ +E + L V F ++ YD IW Q + D+
Sbjct: 113 IAPVQNKRNEEYNNQ--AGLADNITVKYGSF--LEIPCEDNSYDFIWSQDAFLHSPDKL- 167
Query: 222 IKFLNLCKQILNKNGIIIIKDNVASGVKNE------YDDEDSSVVRSLPQFCLLFSKANL 275
K C ++L G++ I D + ++ D + SL + L + L
Sbjct: 168 -KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGL 226
Query: 276 KCVKSE 281
+++
Sbjct: 227 VTLRTF 232
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLE 164
GYS L + + L L P +VL+ G GIG + L + D +I ++
Sbjct: 9 GYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSID 68
Query: 165 QSSKFIEQAKEEILKDCDKLDKCYNVGIQ-------DFKPEDLNIKYDVIWIQWVLMFIL 217
S + +E+A+E K+ K NV F+ +D I++ +VL +
Sbjct: 69 ISPESLEKARENTEKNGIK-----NVKFLQANIFSLPFEDS----SFDHIFVCFVLEHL- 118
Query: 218 DEDIIKFLNLCKQILNKNGIIIIKDNVASG 247
+ + L K++L G I + +
Sbjct: 119 -QSPEEALKSLKKVLKPGGTITVIEGDHGS 147
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKC 187
PG V V G L ID + ++ A L
Sbjct: 118 PGC-VVASVPCGWMSELLALDYSACPGVQLVGIDY---DPEALDGATRLAAG--HALAGQ 171
Query: 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKD 242
+ QD D YD++ + ++ D+ + + Q L G ++
Sbjct: 172 ITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
VLDV G G ++ A K+ + + ++ A+ I + V
Sbjct: 40 EVLDVATGGGHVA-NAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGD 93
Query: 197 PEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV---KN 250
E + + ++ + + F++ ++L K G +++ DN A
Sbjct: 94 AEQMPFTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 151
Query: 251 EYD----DEDSSVVRSLP--QFCLLFSKANLKCVKSEKGEFSPMDLWEDW 294
Y+ + D S R+ + + +A + + F ++EDW
Sbjct: 152 FYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH--CFHKTFIFEDW 199
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-04
Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 33/207 (15%)
Query: 79 KDGNRSHYSEVTEYYSNVPPTIDGMLNG------------YSSISDLDIQTSNQFLSSLY 126
S V +YY + + ++D+ + +F
Sbjct: 15 GGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGS 74
Query: 127 CQKKSD--PGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDC 181
G VLD+G G GR YL +K K+ ++ +E A++ +
Sbjct: 75 TLPADGSLEGA-TVLDLGCGTGRDV-YLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA 132
Query: 182 DKLDKCYNVGIQDFKPEDL------------NIKYDVIWIQWVLMFILDEDIIKFLNLCK 229
+K + F + + D++ V ++
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL--ALFKEIH 190
Query: 230 QILNKNGIIIIKDNVASGVKNEYDDED 256
++L G + D A +E +D
Sbjct: 191 RVLRDGGELYFSDVYADRRLSEAAQQD 217
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
++L + G GR + +L + ++ + ++QSS + +AK+ + K+ + DF
Sbjct: 32 KILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGVKIT-TVQSNLADFD 89
Query: 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
++ I + + + Q L G+ I+
Sbjct: 90 IVAD--AWEGIV--SIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 25/161 (15%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
G +D+G G G + +L + E+A+E +L D+
Sbjct: 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLE----RPPV---AEEARE-LLTGRGLADR 253
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
C + DF E + DV I+ VL D+D+++ L + + +++ DN+
Sbjct: 254 CEILP-GDFF-ETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311
Query: 247 GVKNEYD---D-----EDSSVVRSLPQFCLLFSKANLKCVK 279
D RS +F L K+ L+ +
Sbjct: 312 ERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 32/166 (19%), Positives = 49/166 (29%), Gaps = 37/166 (22%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
V+DVG G G + LL H D L+ A D +
Sbjct: 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLD----LQGP---ASAAHRR-FLDTGLSGR 220
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
V F + L + VL D + L C + G++++ + VA
Sbjct: 221 AQVVV-GSFF-DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA- 277
Query: 247 GVKNEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVK 279
DE + RSL + L ++A L
Sbjct: 278 ------GDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 883 | |||
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.83 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.8 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.75 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.74 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.7 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.7 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.7 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.67 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.67 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.67 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.67 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.66 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.66 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.66 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.65 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.65 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.65 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.65 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.64 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.64 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.64 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.64 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.64 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.62 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.61 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.61 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.61 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.6 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.59 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.59 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.59 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.59 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.58 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.58 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.57 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.57 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.57 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.56 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.56 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.56 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.56 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.56 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.55 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.55 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.55 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.55 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.54 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.53 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.53 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.53 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.53 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.52 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.52 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.52 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.52 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.51 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.51 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.5 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.5 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.5 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.5 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.48 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.48 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.48 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.47 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.47 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.46 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.45 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.45 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.44 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.44 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.44 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.42 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.42 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.42 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.41 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.41 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.4 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.4 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.4 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.39 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.39 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.38 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.38 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.37 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.37 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.37 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.36 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.35 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.34 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.34 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.34 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.34 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.34 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.33 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.33 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.32 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.32 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.32 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.31 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.31 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.3 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.3 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.3 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.29 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.28 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.28 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.28 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.28 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.27 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.27 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.27 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.26 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.25 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.25 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.25 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.25 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.25 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.25 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.25 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.25 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.24 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.24 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.23 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.23 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.23 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.23 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.22 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.21 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.21 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.2 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.2 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.2 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.2 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.19 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.19 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.18 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.18 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.18 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.18 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.17 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.17 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.16 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.16 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.16 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.16 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.16 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.15 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.15 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.14 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.14 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.14 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.12 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.12 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.12 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.11 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.11 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.11 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.11 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.11 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.1 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.1 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.1 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.1 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.1 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.1 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.1 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.1 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.09 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.09 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.07 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.06 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.06 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.05 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.05 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.04 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.04 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.03 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.02 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.02 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.01 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.0 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.0 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.0 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.99 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.99 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.98 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.98 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.97 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.97 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.97 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.96 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.95 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.95 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.95 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.95 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.94 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.91 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.91 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.9 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.9 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.89 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.88 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.88 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.87 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.87 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.87 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.86 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.86 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.85 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.85 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.83 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.82 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.82 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.82 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.8 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.79 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.77 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 98.75 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.7 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.68 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.66 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.63 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.61 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.58 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 98.56 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.56 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.56 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.55 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.54 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.51 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.51 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.47 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.46 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.43 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.43 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.42 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.36 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.35 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.31 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.23 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.23 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.23 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.21 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.16 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.16 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.12 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.09 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.09 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.08 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.06 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.04 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 98.03 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.02 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.02 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 98.01 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 98.0 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 97.99 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.98 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.98 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.97 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 97.96 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.95 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.94 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.93 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.91 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.89 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.88 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.88 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.86 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.8 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.79 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.78 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.77 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.76 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.73 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.72 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.72 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.71 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.68 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.68 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.63 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.62 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.62 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.62 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.59 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.57 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.57 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.56 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.56 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.54 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.53 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.51 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.51 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.48 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.35 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.35 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.34 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.32 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 97.29 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.06 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.98 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.97 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 96.96 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.96 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.83 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.83 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.8 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.69 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.49 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.49 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 96.35 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.34 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 96.29 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.11 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.09 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.06 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.0 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 95.92 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 95.91 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 95.7 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 95.64 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.61 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.6 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.01 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.97 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 94.91 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.76 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.15 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 93.64 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.41 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.96 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 92.95 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.87 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.72 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.04 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 91.99 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 91.97 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 91.94 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 91.73 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 89.22 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.7 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 88.67 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 88.37 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.03 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 88.0 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 87.63 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 87.45 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 86.62 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 86.45 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 85.5 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 85.31 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 84.81 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 84.74 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.98 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 83.4 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 83.38 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 82.56 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 82.34 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 81.83 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 80.96 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 80.79 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 80.18 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 80.02 |
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-125 Score=1103.68 Aligned_cols=486 Identities=47% Similarity=0.812 Sum_probs=444.7
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
.+++||.++++++++++. ++|+.++++..+++++|++|||||||++.++++|++||+|++++|+||.+++||+||+||+
T Consensus 97 tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPi 175 (617)
T 4ah6_A 97 TGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT 175 (617)
T ss_dssp TTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCS
T ss_pred CCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCe
Confidence 357999999999999996 9999988777788999999999999999999999999999999999994268999999999
Q ss_pred eccCCCCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 376 LFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 376 l~~~~~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
|++++|+||++|.++++..+.+|||+||||+|||++|++|++|||||+||||+|+++++|+|||||||+||+|.|++|+|
T Consensus 176 L~~st~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m 255 (617)
T 4ah6_A 176 LFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQ 255 (617)
T ss_dssp SBCCCCSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHH
T ss_pred eccCCCCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGP 531 (883)
Q Consensus 456 ~~~E~li~~i~~~----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 531 (883)
+++|+||+++++. +..||+||||.|||.+||+||||+||+++|.| +++.
T Consensus 256 ~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~D-Vtdi-------------------------- 308 (617)
T 4ah6_A 256 SLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIID-ISDV-------------------------- 308 (617)
T ss_dssp HHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEE-CGGG--------------------------
T ss_pred HHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCccccc-HHHH--------------------------
Confidence 9999999999985 57899999999999999999999999999999 8877
Q ss_pred cccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccc
Q psy8372 532 SFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSET 611 (883)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (883)
|. +++|. +|+.++ ..++|.|+|
T Consensus 309 -f~-----------------------------~s~Fk--------VF~~~~----~~~~g~VkA---------------- 330 (617)
T 4ah6_A 309 -FR-----------------------------NTEIG--------FLQDAL----SKPHGTVKA---------------- 330 (617)
T ss_dssp -GS-----------------------------SCCCH--------HHHHHT----TSTTEEEEE----------------
T ss_pred -hc-----------------------------cCCch--------hHhhhh----hcCCCeEEE----------------
Confidence 43 33342 232222 235778887
Q ss_pred cCCCccceeeeecCCcc-ccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEE
Q psy8372 612 KSSGEDVYRILILPKDL-DSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690 (883)
Q Consensus 612 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 690 (883)
|++|+++ .++|+.+++|.++++.++|.+++.++.++|+. |.+++.|++++++.++|.+.+++++||+|
T Consensus 331 ----------I~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~-~~~~I~Kflsee~~~~L~e~l~a~~GDlI 399 (617)
T 4ah6_A 331 ----------ICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRN-WNSPVANFIMESQRLELIRLMETQEEDVV 399 (617)
T ss_dssp ----------EEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTT-SSCTTHHHHHHHHHHHHHHHHTCCSSEEE
T ss_pred ----------EEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCc-cccchhhhcCHHHHHHHHHHhCCCCCCEE
Confidence 8999877 47999999999999987787777777766654 99999999999999999999999999999
Q ss_pred EEecCCchhhHhHHHHHHHHhhhhcccccCC---cccCCCCCccEEEEEecCCCCCC-CC-CCccccccCcCCCCCCChh
Q psy8372 691 VVSWGKQEDVLSLLGMIRSESHKIKVKNTLP---LEFDNPKSFSIFWVVDFPLFLPS-DS-GTLESAHHPFTQPHPEDEH 765 (883)
Q Consensus 691 ~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~---~~l~~~~~~~f~wV~dfPl~~~~-~~-~~~~~~h~PFt~p~~~d~~ 765 (883)
+|.+|+...++++||+||.+++ +.+. ..+.+++.|+|+||||||||++. |+ |+|.|+|||||||+++|.+
T Consensus 400 ff~Ag~~~~v~~~LG~LR~~l~-----~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~ 474 (617)
T 4ah6_A 400 LLTAGEHNKACSLLGKLRLECA-----DLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIH 474 (617)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHH-----HHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTST
T ss_pred EEecCChHHHHHHHHHHHHHHH-----HHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHH
Confidence 9999988889999999999999 4331 13788889999999999999644 44 9999999999999999999
Q ss_pred hhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH-hCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHh
Q psy8372 766 LLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILC 844 (883)
Q Consensus 766 ~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~-~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~ 844 (883)
++.+||.+++|++||||+||+||+|||+||||+++|+++|+ .+|++++.|+|||+||+||+|||||||+|||||||+|+
T Consensus 475 ~l~~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~ 554 (617)
T 4ah6_A 475 LLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVT 554 (617)
T ss_dssp HHHHSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHH
T ss_pred HhhcChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHc
Confidence 99999999999999999999999999999999999999998 89999889999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 845 GTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 845 ~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
|++||||||+||||.+|.|||++||+.|+++||+||||+
T Consensus 555 g~~~irdvi~fP~~~~~~d~~~~aP~~v~~~qL~el~i~ 593 (617)
T 4ah6_A 555 GSPSIRDVIAFPKSFRGHDLMSNTPDSVPPEELKPYHIR 593 (617)
T ss_dssp TCSSGGGSSSSCCCSSSCCSSSCCSBCCCGGGTTTTC--
T ss_pred CCCchheEEecCCCCCccccccCCCCCCCHHHHHhcCee
Confidence 999999999999999999999999999999999999985
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-111 Score=986.94 Aligned_cols=472 Identities=42% Similarity=0.714 Sum_probs=420.7
Q ss_pred cceEEEEeeeeeecccCCCCCccccc------cCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKN------YNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVE 370 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~------~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~E 370 (883)
+++||.++++++++++. ++|+.+.+ +..+++++|++|||||||++.++++|++||+|++++|+|| +++||+|
T Consensus 88 ge~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl-~~~gF~E 165 (580)
T 1l0w_A 88 GRVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFL-DREGFVQ 165 (580)
T ss_dssp TTEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEE
T ss_pred ccEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHH-HhCCcEE
Confidence 57899999999999995 78888865 5678899999999999999999999999999999999999 6899999
Q ss_pred EcCCeeccCCCCCCccceeccCC-CCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 371 VETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 371 V~TP~l~~~~~~ga~~f~v~~~~-~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
|+||+|++++++||++|.|+++. .+.+|+|+||||+|||++|++|++||||||||||||+++++|||||||||+||+|+
T Consensus 166 VeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~ 245 (580)
T 1l0w_A 166 VETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFV 245 (580)
T ss_dssp CCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESC
T ss_pred EeCCEEecCCCCCCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecCC
Confidence 99999999999999999999873 46777899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPG 524 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 524 (883)
|++|+|+++|+||+++++. ++.||+||||.|||++||+|+||+||++++.+ +++.
T Consensus 246 d~~dvm~~~E~li~~i~~~v~~~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d-~~~~------------------- 305 (580)
T 1l0w_A 246 EVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKE-VGPL------------------- 305 (580)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEE-CGGG-------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEHHHHHHHhcCCCcccccccchhh-hhhh-------------------
Confidence 9999999999999999985 56799999999999999999999999999988 6554
Q ss_pred CCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeecccccc
Q psy8372 525 FDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNF 604 (883)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (883)
+. .+++. .+... - .|++
T Consensus 306 --------~~-----------------------------~~~~~--------~~~~~--------~-~v~~--------- 322 (580)
T 1l0w_A 306 --------FR-----------------------------QSGFR--------VFQEA--------E-SVKA--------- 322 (580)
T ss_dssp --------GS-----------------------------SSCCT--------HHHHS--------S-EEEE---------
T ss_pred --------hh-----------------------------ccccc--------ccccc--------c-eeEE---------
Confidence 21 11121 11110 0 2333
Q ss_pred ccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCC
Q psy8372 605 RSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENL 684 (883)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (883)
|.+|+ .++++.++.+.+++++ ++.+++.++++.++. |.+++.+++++ +..++.+++++
T Consensus 323 -----------------i~~~~--~~~r~~~~~l~~~~~~-~g~~~~~~~~~~~~~-~~~~~~k~l~~-~~~~l~~~~~~ 380 (580)
T 1l0w_A 323 -----------------LALPK--ALSRKEVAELEEVAKR-HKAQGLAWARVEEGG-FSGGVAKFLEP-VREALLQATEA 380 (580)
T ss_dssp -----------------EEESS--CCCHHHHHHHHHHHHH-TSCSCCEEEEEETTE-EESTTHHHHGG-GHHHHHHHHCC
T ss_pred -----------------EeccC--ccCHHHHHHHHHHHHH-cCCCcceEEEecCcc-ccchhhhhhhH-HHHHHHHHhCC
Confidence 77776 5899999999999986 566677777765432 67778888887 77899999999
Q ss_pred CCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCC
Q psy8372 685 EEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPED 763 (883)
Q Consensus 685 ~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d 763 (883)
+.||++++.++....+++.||+||.+++ +.+ ++.++ .++|+||||||+++++++ ++|.++|||||||+++|
T Consensus 381 ~~gd~~~~~~~~~~~~~~~Lg~lr~~l~-----~~~--~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~d 452 (580)
T 1l0w_A 381 RPGDTLLFVAGPRKVAATALGAVRLRAA-----DLL--GLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPED 452 (580)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHHHHHHH-----HHT--TCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTT
T ss_pred CcCceEEEecCccchhhhhHHHHHHHHH-----HHh--ccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchh
Confidence 9999999999988889999999999999 433 45555 678999999999998776 99999999999999999
Q ss_pred hhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCccc----HHHHHHHhhcCCCCCcceeccHHHH
Q psy8372 764 EHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDRL 839 (883)
Q Consensus 764 ~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~----~~~~l~a~~~G~pPhgG~glGldRl 839 (883)
...+.+||.++++++||||+||+||+|||+|+|||++|+++|+.+|+++++ |+|||+||+||+|||||||||||||
T Consensus 453 l~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRL 532 (580)
T 1l0w_A 453 LPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRL 532 (580)
T ss_dssp TTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHH
T ss_pred hhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHH
Confidence 888888997788999999999999999999999999999999999998875 8999999999999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 840 MSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 840 vm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
||+|+|++||||||+|||+++|.|+|++||+.|+++||+||||+
T Consensus 533 vMll~g~~sIRdVi~FP~~~~~~~~~~~aP~~v~~~ql~~~~~~ 576 (580)
T 1l0w_A 533 LALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLM 576 (580)
T ss_dssp HHHHHTCSSGGGGSSSCCCTTSCBTTTTBSEECCHHHHHHHTEE
T ss_pred HHHHcCCCcHHeEecCCCCCCccccccCCCCcCCHHHHHhhcce
Confidence 99999999999999999999999999999999999999999984
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-110 Score=983.58 Aligned_cols=480 Identities=35% Similarity=0.616 Sum_probs=425.6
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
.+++||.++++++++++. ++|+.+.+ ..++++|++|||||||++.++++|++||+|++++|+|| +++||+||+||+
T Consensus 89 ~geiEl~~~~i~vl~~a~-~lP~~~~~--~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl-~~~gFlEVeTPi 164 (585)
T 1c0a_A 89 TGEIEVLASSLTIINRAD-VLPLDSNH--VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFM-DDHGFLDIETPM 164 (585)
T ss_dssp TTTEEEEEEEEEEEECCC-SCSSCTTS--CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCS
T ss_pred CccEEEEEeEEEEEeccC-CCCCCccc--cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEeCCE
Confidence 357899999999999995 78888765 57899999999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 376 LFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 376 l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
|++++|+||++|.|+++ ..+.+|+|+||||+|||++|++|++||||||||||||+++++|||||||||+||+|+|++|+
T Consensus 165 L~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dv 244 (585)
T 1c0a_A 165 LTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQV 244 (585)
T ss_dssp SBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHH
T ss_pred EecCCCCCCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHH
Confidence 99999999999999987 34677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRR 529 (883)
Q Consensus 455 m~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 529 (883)
|+++|+||+++++. ++. |+||||.|||++||+|+||+||++++.+ +++.
T Consensus 245 m~~~E~li~~i~~~v~~~~~~~-f~r~ty~ea~~~~g~dkpd~r~~~~l~d-~~~~------------------------ 298 (585)
T 1c0a_A 245 REVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTD-VADL------------------------ 298 (585)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCS-CCEEEHHHHHHHHSCSSCCTTSCCCEEE-CHHH------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCccc-cceeeHHHHHHHhcCCCccccCCceeEE-ehhh------------------------
Confidence 99999999999976 333 9999999999999999999999999988 5544
Q ss_pred CCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcc
Q psy8372 530 GPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRS 609 (883)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (883)
|. .++| ..++..+ .+++|.+.+
T Consensus 299 ---~~-----------------------------~~~f--------~~~~~~~----~~~~~~~~~-------------- 320 (585)
T 1c0a_A 299 ---LK-----------------------------SVEF--------AVFAGPA----NDPKGRVAA-------------- 320 (585)
T ss_dssp ---HT-----------------------------TCSC--------HHHHHHH----HCTTEEEEE--------------
T ss_pred ---hc-----------------------------cCCc--------ceehhhh----hccCceEEE--------------
Confidence 11 1222 1122222 233555655
Q ss_pred cccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCc----ccccccccccCChhhHHHHHHHcCCC
Q psy8372 610 ETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDS----LEWTNKLTKILPDLNVEEFRNKENLE 685 (883)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (883)
|.+|.++.++++.++++.++++++ +.+++.++++.++ ..|.+++.+++++++..+|.++++++
T Consensus 321 ------------i~~~~~~~~~r~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~ 387 (585)
T 1c0a_A 321 ------------LRVPGGASLTRKQIDEYGNFVKIY-GAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQ 387 (585)
T ss_dssp ------------EEETTGGGCCHHHHHHHHHHHHHT-TCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCC
T ss_pred ------------EEccccCccCHhhHHHHHHHHHHc-CCCCceeEEecccccccccccchhhhhcCHHHHHHHHHHhCCC
Confidence 777776668999999999999874 5566667776552 23788999999999999999999999
Q ss_pred CCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChh
Q psy8372 686 EGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEH 765 (883)
Q Consensus 686 ~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~ 765 (883)
.||++++.++....+++.||+||.+++ +.+ ++.+++.++|+||||||+++..++++|.++|||||||+++|..
T Consensus 388 ~~d~~~~~~~~~~~~~~~lG~lr~~l~-----~~~--~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~ 460 (585)
T 1c0a_A 388 DGDMIFFGADNKKIVADAMGALRLKVG-----KDL--GLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAA 460 (585)
T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHH-----HHT--TCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHH
T ss_pred cCcEEEEecCcccchhhhhHHHHHHHH-----HHh--CcccccccccEEEEeCCccccccccccccccCCccCCCchhhh
Confidence 999999999888888999999999999 444 4666667789999999999833349999999999999999998
Q ss_pred hhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCccc----HHHHHHHhhcCCCCCcceeccHHHHHH
Q psy8372 766 LLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDRLMS 841 (883)
Q Consensus 766 ~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~----~~~~l~a~~~G~pPhgG~glGldRlvm 841 (883)
.+.+||.++++++||||+||+||+|||+|+|||++|+++|+.+|+++++ |+|||+||+||+|||||||||||||||
T Consensus 461 ~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvm 540 (585)
T 1c0a_A 461 ELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTM 540 (585)
T ss_dssp HHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHH
T ss_pred hhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHH
Confidence 8888998788999999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 842 ILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 842 ~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
+|+|++||||||+|||+++|.|+|++||+.|+++||+||||+
T Consensus 541 lltg~~sIRdVi~FPr~~~~~~~~~~ap~~v~~~ql~~~~~~ 582 (585)
T 1c0a_A 541 LLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582 (585)
T ss_dssp HHHTCSCGGGGSSSCCCTTSCBTTTTBSCCCCHHHHHHTTCC
T ss_pred HHcCCCcHHheecCCCCCCccccccCCCCcCCHHHHHHhCCc
Confidence 999999999999999999999999999999999999999985
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-80 Score=713.80 Aligned_cols=343 Identities=25% Similarity=0.433 Sum_probs=281.4
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|.. .++..++++|+++|||||| ++.++++|++||+|++++|+|| +++||+||+||+|
T Consensus 134 e~ei~~~~i~vl~~a~~plP~k--~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~-~~~gFlEVeTPiL 210 (504)
T 1e1o_A 134 ELSIHCTELRLLTKALRPLPDK--FHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVETPMM 210 (504)
T ss_dssp CEEEEEEEEEEEECCSSCCCC---------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTTTCEECCCCSE
T ss_pred eEEEEEEEEEEecccCCCCCcc--ccCCcChhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCeE
Confidence 5789999999999997788843 3445678999999999996 8999999999999999999999 7899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+ ++++|| ++|.++++..+..+||+||||+|+|++|++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 211 ~-~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dl 289 (504)
T 1e1o_A 211 Q-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDL 289 (504)
T ss_dssp E-SSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHH
T ss_pred E-ecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHH
Confidence 7 567765 6799987777899999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||+++++. ++.||+||||.|||++|+.| .| +.+ .
T Consensus 290 m~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~pf~rity~eAi~~~~~d-~d------~~~----~-------------- 344 (504)
T 1e1o_A 290 IELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TD------MAD----L-------------- 344 (504)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTT-CC------GGG----G--------------
T ss_pred HHHHHHHHHHHHHHHhCCceeeeCCEeeccCCCceEEeHHHHHHHHcCC-CC------ccc----c--------------
Confidence 99999999999864 45799999999999999763 11 000 0
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
T Consensus 345 -------------------------------------------------------------------------------- 344 (504)
T 1e1o_A 345 -------------------------------------------------------------------------------- 344 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
+.++.+.+++++.
T Consensus 345 ---------------------------------~~~~~~~~~~~~~---------------------------------- 357 (504)
T 1e1o_A 345 ---------------------------------DNFDAAKALAESI---------------------------------- 357 (504)
T ss_dssp ---------------------------------GSHHHHHHHHHHT----------------------------------
T ss_pred ---------------------------------CCHHHHHHHHHHc----------------------------------
Confidence 0112233333321
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
|++.. ..+.+|.++.+++ ++.+++.+.+ |+||+|||++ .||||++
T Consensus 358 ---g~~~~------------~~~~~g~l~~~~~----~~~ve~~~~~-----p~fV~dyP~~-----------~~pf~~~ 402 (504)
T 1e1o_A 358 ---GITVE------------KSWGLGRIVTEIF----DEVAEAHLIQ-----PTFITEYPAE-----------VSPLARR 402 (504)
T ss_dssp ---TCCCC------------TTCCHHHHHHHHH----HHHTGGGCCS-----CEEEECCBGG-----------GCTTBCB
T ss_pred ---CCCCC------------CCcCHhHHHHHHH----HHHhhccCCC-----eEEEECCCcc-----------cCcCcCC
Confidence 11100 0124677887777 3455555554 4999999997 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC----C-CCccc---HHHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL----N-IETSS---LQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~----~-~~~~~---~~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||++||+||+|||+|+|||++|+++|+.. + .+++. ++|||+|++||||||||
T Consensus 403 ~~~dp~~---------~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 473 (504)
T 1e1o_A 403 NDVNPEI---------TDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAG 473 (504)
T ss_dssp CSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEE
T ss_pred CCCCCCc---------eEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCcee
Confidence 9887654 589999999999999999999999999999542 1 23333 49999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||+|||++||||||+|||+++
T Consensus 474 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 502 (504)
T 1e1o_A 474 LGIGIDRMIMLFTNSHTIRDVILFPAMRP 502 (504)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999976
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-78 Score=699.95 Aligned_cols=342 Identities=25% Similarity=0.418 Sum_probs=281.6
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|.. .++..++++|+++|||||| ++.+++++++||+|++++|+|| +++||+||+||+|
T Consensus 125 e~ei~~~~i~vl~~~~~plP~k--~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff-~~~gF~EVeTPiL 201 (493)
T 3a74_A 125 ELSIKVSSYEFLTKALRPLPEK--YHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYL-DSHGYLEVETPMM 201 (493)
T ss_dssp CEEEEEEEEEEEECCSSCCCCC-------CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSE
T ss_pred cEEEEEEEEEEcccccCCCCcc--ccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEECCeE
Confidence 5789999999999998788843 3445679999999999996 8999999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
++ +++|+ +.|.++++..+..+||+||||+|+|++|++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 202 ~~-~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dl 280 (493)
T 3a74_A 202 HA-VAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDI 280 (493)
T ss_dssp ES-SCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHH
T ss_pred Ee-cCCCCcccceEecccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHH
Confidence 84 56664 5799976666899999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||+++++. ++.||+||||.|||++|+.. + + | ..
T Consensus 281 m~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~pf~rity~eai~~~~~~-----------d-~-----~-----~~---- 334 (493)
T 3a74_A 281 MKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGV-----------D-F-----W-----RQ---- 334 (493)
T ss_dssp HHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHHHHHHHHTCC-----------C-T-----T-----SC----
T ss_pred HHHHHHHHHHHHHHHhCCceEeeCCEeeccCCCcceeeHHHHHHHHhCC-----------C-C-----c-----cc----
Confidence 99999999999864 45799999999999998751 1 0 0 00
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
+
T Consensus 335 -------------~------------------------------------------------------------------ 335 (493)
T 3a74_A 335 -------------M------------------------------------------------------------------ 335 (493)
T ss_dssp -------------C------------------------------------------------------------------
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
..+++.+++++
T Consensus 336 ----------------------------------~~~~~~~~~~~----------------------------------- 346 (493)
T 3a74_A 336 ----------------------------------SDEEARELAKE----------------------------------- 346 (493)
T ss_dssp ----------------------------------CHHHHHHHHHH-----------------------------------
T ss_pred ----------------------------------CHHHHHHHHHH-----------------------------------
Confidence 01223333332
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
.|++.. ..+.+|.++.+++ ++.+++.+.+ ++||+|||+. .||||++
T Consensus 347 --~g~~~~------------~~~~~g~l~~~~~----~~~ve~~~~~-----p~fv~dyP~~-----------~~pf~~~ 392 (493)
T 3a74_A 347 --HGVEVA------------PHMTFGHIVNEFF----EQKVEDKLIQ-----PTFIYGHPVE-----------ISPLAKK 392 (493)
T ss_dssp --TTCCCC------------TTCCHHHHHHHHH----HHHTGGGCCS-----CEEEECCBGG-----------GCTTBCB
T ss_pred --cCCCCC------------CCcChhHHHHHHH----HHHhhcccCC-----cEEEECCCcc-----------cCCccCc
Confidence 111100 0124677877777 3455555555 4999999997 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC----C-CCccc---HHHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL----N-IETSS---LQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~----~-~~~~~---~~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||++||+||+|||+|+|||++|+++|+.. + .+++. ++|||+|++||+|||||
T Consensus 393 ~~~dp~~---------~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 463 (493)
T 3a74_A 393 NPDDPRF---------TDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGG 463 (493)
T ss_dssp CSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEE
T ss_pred CCCCCCe---------EEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCcee
Confidence 9887654 589999999999999999999999999999542 1 23333 49999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||+|||++||||||+|||+++
T Consensus 464 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 464 LGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999875
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=682.02 Aligned_cols=326 Identities=29% Similarity=0.548 Sum_probs=275.0
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+.+++....++++|+++||||+|++.++++|++||+|++++|+|| +++||+||+||+|+
T Consensus 87 ~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~-~~~gF~EVeTPiL~ 165 (438)
T 3nem_A 87 GFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF-HENGFIEIHTPKII 165 (438)
T ss_dssp SEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEE
T ss_pred cEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCcEEEeCCEEe
Confidence 58899999999999988999988654457899999999999999999999999999999999999 68999999999999
Q ss_pred cCCCCC-CccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHH
Q psy8372 378 KRTPGG-AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDV 454 (883)
Q Consensus 378 ~~~~~g-a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dv 454 (883)
+++++| +..|++.++ +..+||+||||+|||++|++|++||||||||||+|+++++|| |||||||+||+|+| ++|+
T Consensus 166 ~~~~eg~~~~f~~~~~--~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~ 243 (438)
T 3nem_A 166 ATATEGGTELFPMKYF--EEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEV 243 (438)
T ss_dssp SSCSSCSSSCCEEEET--TEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHH
T ss_pred cCCCCCCccceeEeeC--CccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHH
Confidence 887655 456888765 688999999999999999999999999999999999998776 89999999999999 9999
Q ss_pred HHHHHHHHHHHhcc------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRL 516 (883)
Q Consensus 455 m~~~E~li~~i~~~------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~ 516 (883)
|+++|+||+++++. ++.||+||||.||++.+.... + .
T Consensus 244 m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g------------~--~----------- 298 (438)
T 3nem_A 244 MSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLG------------K--E----------- 298 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTT------------C--C-----------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcC------------C--C-----------
Confidence 99999999999864 246899999999987632100 0 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEe
Q psy8372 517 PRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLF 596 (883)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (883)
+. | +.++
T Consensus 299 ----------------~~------~----------------------~~dl----------------------------- 305 (438)
T 3nem_A 299 ----------------IP------W----------------------GEDI----------------------------- 305 (438)
T ss_dssp ----------------CC------T----------------------TSCC-----------------------------
T ss_pred ----------------CC------C----------------------CCCC-----------------------------
Confidence 00 0 0000
Q ss_pred eeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHH
Q psy8372 597 QIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVE 676 (883)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (883)
+
T Consensus 306 ----------------------------------~--------------------------------------------- 306 (438)
T 3nem_A 306 ----------------------------------D--------------------------------------------- 306 (438)
T ss_dssp ----------------------------------C---------------------------------------------
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 677 EFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 677 ~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
......|++...+.. .. .++||+|||.. ..||
T Consensus 307 ---------------------~~~e~~l~~~~~~~~-----------~~-----~p~fi~~yP~~-----------~~pf 338 (438)
T 3nem_A 307 ---------------------TEGERLLGKYMMENE-----------NA-----PLYFLYQYPSE-----------AKPF 338 (438)
T ss_dssp ---------------------HHHHHHHHHHHHHHH-----------CC-----SEEEEESCBGG-----------GSCT
T ss_pred ---------------------cHHHHHHHHHhhhhc-----------CC-----CCEEEECCchh-----------hCcc
Confidence 001122333221111 11 46999999987 7999
Q ss_pred -CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceecc
Q psy8372 757 -TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALG 835 (883)
Q Consensus 757 -t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glG 835 (883)
++++++|+.+ +++|||+++|.||+|||+|+|||++|+++|+..|++++.++|||+|++||||||||||||
T Consensus 339 y~k~~~~~p~~---------~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlG 409 (438)
T 3nem_A 339 YIMKYDNKPEI---------CRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLG 409 (438)
T ss_dssp TBCBCTTSTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEE
T ss_pred ccccCCCCCCc---------eEEEEEEECCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEh
Confidence 8888877655 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCCC
Q psy8372 836 IDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 836 ldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||+|+|+|++||||||+|||+..
T Consensus 410 idRLvm~l~g~~~Irdvi~FPr~~~ 434 (438)
T 3nem_A 410 AERLIKQMLDLPNIREVILFPRDRR 434 (438)
T ss_dssp HHHHHHHHTTCSCGGGGSSSCCCSS
T ss_pred HHHHHHHHhCCCcHHHcccCCCCcc
Confidence 9999999999999999999999854
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-77 Score=688.38 Aligned_cols=348 Identities=26% Similarity=0.431 Sum_probs=282.0
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|+.. ++..++++|+++|||||| ++.++++|++||+|+++||+|| +++||+||+||+|
T Consensus 155 elel~~~~i~vLs~a~~plP~k~--~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff-~~~gFlEVeTPiL 231 (529)
T 4ex5_A 155 ELSVKCTQLRLLAKALRPLPDKF--HGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFM-GDADFMEVETPML 231 (529)
T ss_dssp CEEEEEEEEEEEECCSSCCCC--------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSE
T ss_pred cEEEEEEEEEEEecCCCCCCccc--cCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCee
Confidence 57899999999999987888754 345678999999999998 7999999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+ +++||| ++|.+.++..+..+||+||||||+|++|++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 232 ~-~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dl 310 (529)
T 4ex5_A 232 H-PIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWL 310 (529)
T ss_dssp E-SSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHH
T ss_pred e-ccCCCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHH
Confidence 7 567877 5798877777889999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||+++++. ++.||+||||.|||++|+... | ..+ +
T Consensus 311 m~l~E~li~~v~~~v~~~~~~~~~~~~id~~~pf~Rity~eAi~~~~~~~-~------~~~-~----------------- 365 (529)
T 4ex5_A 311 MDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSY-T------DGQ-L----------------- 365 (529)
T ss_dssp HHHHHHHHHHHHHHHHSCSEEEETTEEEETTSCCEEEEHHHHHHHHCTTS-C------HHH-H-----------------
T ss_pred HHHHHHHHHHHHHHHhCcCceecCceeeccCCCceEEEHHHHHHHHhCCC-C------hhh-c-----------------
Confidence 99999999999864 467999999999999987521 0 000 0
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
T Consensus 366 -------------------------------------------------------------------------------- 365 (529)
T 4ex5_A 366 -------------------------------------------------------------------------------- 365 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
...+.+.+++++.
T Consensus 366 ---------------------------------~~~~~l~~~~~~~---------------------------------- 378 (529)
T 4ex5_A 366 ---------------------------------SDDAFLRSELKRL---------------------------------- 378 (529)
T ss_dssp ---------------------------------TCHHHHHHHHHHT----------------------------------
T ss_pred ---------------------------------CCHHHHHHHHHHc----------------------------------
Confidence 0011223333321
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
|++..+ .....+.+|.+..+++ +..+|+.+.+| +||+|||.. ..||+++
T Consensus 379 ---g~~~~~--------~~~~~~~~g~l~~e~~----~~~vE~~l~~P-----~FI~dyP~~-----------~splak~ 427 (529)
T 4ex5_A 379 ---GVDVTQ--------PAFLNAGIGALQLALF----EETAEAQLWEP-----TFIIDYPIE-----------VSPLARE 427 (529)
T ss_dssp ---TCCTTS--------GGGTTCCHHHHHHHHH----HHHTGGGCCSC-----EEEEEEEGG-----------GCTTBCB
T ss_pred ---CCCCCC--------cccCCCCHHHHHHHHH----HHHhccccCCC-----EEEECCchh-----------hCCCccc
Confidence 111000 0000123566666665 35556667666 899999987 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCccc--HHHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSS--LQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~--~~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||+++|.||+|||+|+|||++|+++|+. .|-+++. .+|||+|++||||||||
T Consensus 428 ~~~~p~~---------~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG 498 (529)
T 4ex5_A 428 SDTVAGI---------TERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGG 498 (529)
T ss_dssp CSSSTTE---------EEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEE
T ss_pred CCCCCCc---------eEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcE
Confidence 9888765 48999999999999999999999999999943 3333333 38999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
||||||||||+|||++||||||+||+++..
T Consensus 499 ~GlGiDRLvMlltg~~~IRdVi~FP~~r~~ 528 (529)
T 4ex5_A 499 CGIGIDRLVMLLTDSPTIRDVLLFPHLRRE 528 (529)
T ss_dssp EEEEHHHHHHHHHTCSSGGGGCSSCCCCCC
T ss_pred EEEeHHHHHHHHcCCCcHHHeecCCccCCC
Confidence 999999999999999999999999998753
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-77 Score=678.96 Aligned_cols=325 Identities=30% Similarity=0.458 Sum_probs=224.9
Q ss_pred cceEEEEeeeeeecccCCCCCccccc-cCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKN-YNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~-~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
+++||.++++++++++..++|+++++ ....++++|+++||||||++.+++++++|++|++++|+|| .++||+||+||+
T Consensus 73 ~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f-~~~gF~EV~TPi 151 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYL-DRQDFTEIFTPK 151 (422)
T ss_dssp TSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC-
T ss_pred ccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCE
Confidence 36899999999999998899987754 3456799999999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCcc-ceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHH
Q psy8372 376 LFKRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRD 452 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~ 452 (883)
|+.++++|+.. |.+++. +..+||+||||+|+|+++ +|++||||||||||+|+++++|| |||||+|+|++|. |++
T Consensus 152 l~~~~~e~~~~~f~~~~~--g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~ 228 (422)
T 1n9w_A 152 VVRAGAEGGSGLFGVDYF--EKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEE 228 (422)
T ss_dssp -----------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHH
T ss_pred EEEeCCCCCceeEEEeeC--CCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHH
Confidence 99888877765 888754 677899999999999977 77999999999999999998766 8999999999999 999
Q ss_pred HHHHHHHHHHHHHhcc---------------CC---CCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCC
Q psy8372 453 DVMRLIEELLCYCLNI---------------PT---RTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPT 514 (883)
Q Consensus 453 dvm~~~E~li~~i~~~---------------~~---~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~ 514 (883)
|+|+++|+|++++++. +. .||+||||.||++.|.... + . .
T Consensus 229 dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~----------~----~-~------- 286 (422)
T 1n9w_A 229 DLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL----------G----Y-P------- 286 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS----------C----C-C-------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC----------C----c-c-------
Confidence 9999999999999863 22 6899999999998863210 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeE
Q psy8372 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTV 594 (883)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (883)
| +.++
T Consensus 287 --------------------------~----------------------~~dl--------------------------- 291 (422)
T 1n9w_A 287 --------------------------V----------------------GQDL--------------------------- 291 (422)
T ss_dssp --------------------------C----------------------CSSC---------------------------
T ss_pred --------------------------c----------------------cccc---------------------------
Confidence 0 0000
Q ss_pred EeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhh
Q psy8372 595 LFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLN 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (883)
..
T Consensus 292 ------------------------------------~~------------------------------------------ 293 (422)
T 1n9w_A 292 ------------------------------------SE------------------------------------------ 293 (422)
T ss_dssp ------------------------------------CH------------------------------------------
T ss_pred ------------------------------------Cc------------------------------------------
Confidence 00
Q ss_pred HHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccccc
Q psy8372 675 VEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHH 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~ 754 (883)
.....|++... ..+ . .+|+||+|||+. ||
T Consensus 294 ------------------------~~e~~l~~~~~--------~~~----~----~~p~fv~d~P~~-----------~~ 322 (422)
T 1n9w_A 294 ------------------------EAERLLGEYAK--------ERW----G----SDWLFVTRYPRS-----------VR 322 (422)
T ss_dssp ------------------------HHHHHHHHHHH--------HHT----C----CSEEEEECCBGG-----------GS
T ss_pred ------------------------HHHHHHHHHHH--------hhh----C----CceEEEECCChh-----------hC
Confidence 00011221111 111 1 147999999998 99
Q ss_pred CcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceec
Q psy8372 755 PFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIAL 834 (883)
Q Consensus 755 PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~gl 834 (883)
||+++..+| .+ +++|||++||+||+|||+|+|||++|+++|+.+|++++.|+|||+|++||+||||||||
T Consensus 323 pf~~~~~~d-~~---------~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~gl 392 (422)
T 1n9w_A 323 PFYTYPEED-GT---------TRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAI 392 (422)
T ss_dssp CTTBCBCTT-SB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEE
T ss_pred cCcCCCCCC-CE---------EEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEE
Confidence 999887665 22 69999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 835 GIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 835 GldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||||||+|+|++||||||+|||+++-
T Consensus 393 GiDRLvm~l~g~~~Irdvi~FPr~~~~ 419 (422)
T 1n9w_A 393 GAERLTQKLLGLPNVRYARAFPRDRHR 419 (422)
T ss_dssp EHHHHHHHHTTCSSGGGGCSCC-----
T ss_pred cHHHHHHHHhCCCcHHhEEecCCCCCC
Confidence 999999999999999999999998753
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-75 Score=673.97 Aligned_cols=352 Identities=27% Similarity=0.469 Sum_probs=278.7
Q ss_pred cceEEEEeeeeeecccCCCCCccccccC------------ccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhc
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYN------------KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLAT 364 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~------------~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~ 364 (883)
+++||.++++++++++..++|+.+++.. ..++++|+++||||||++.+++++++|+.|++++|+|| +
T Consensus 115 g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~-~ 193 (487)
T 1eov_A 115 QNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYL-A 193 (487)
T ss_dssp EEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4789999999999999778999775432 36789999999999999999999999999999999999 6
Q ss_pred CCCeEEEcCCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecc
Q psy8372 365 HRDFVEVETPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQL 442 (883)
Q Consensus 365 ~~gF~EV~TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~l 442 (883)
++||+||+||+|+++. ++||+.|.+++. +..+||+||||+|+|++|++|++||||||||||+|+++++|| ||||||
T Consensus 194 ~~gF~EV~TPil~~~~~~~ga~~f~~~~~--~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~l 271 (487)
T 1eov_A 194 TKKFTEVHTPKLLGAPSEGGSSVFEVTYF--KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGL 271 (487)
T ss_dssp HTTCEECCCCSEESSCSSSSSCCCEEEET--TEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEE
T ss_pred hCCcEEEeCCEEEEecCCCCcccceeccC--CccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhh
Confidence 8999999999999874 567888999874 788999999999999999999999999999999999998777 799999
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCC
Q psy8372 443 DIELSFT-TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAG 521 (883)
Q Consensus 443 e~e~~~~-~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 521 (883)
|+||+|. +++|+|+++|+||+++++.+.. |++.++.+ ++.. ||.
T Consensus 272 e~e~af~~~~~dlm~l~E~ll~~l~~~v~~---------------------~~~~~l~~-~~~~------~~~------- 316 (487)
T 1eov_A 272 DMEMAFEEHYHEVLDTLSELFVFIFSELPK---------------------RFAHEIEL-VRKQ------YPV------- 316 (487)
T ss_dssp EEEEECSSCTHHHHHHHHHHHHHHHHHHHH---------------------HCHHHHHH-HHHH------SCC-------
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHh---------------------hchhHHHh-hhhh------cCC-------
Confidence 9999997 5999999999999999876321 22333333 3222 000
Q ss_pred CCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccc
Q psy8372 522 EPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNV 601 (883)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (883)
..+. .+. .|...
T Consensus 317 ---------~~~~------------------------------------------~~~----------~~~~~------- 328 (487)
T 1eov_A 317 ---------EEFK------------------------------------------LPK----------DGKMV------- 328 (487)
T ss_dssp ---------CCCC------------------------------------------CCT----------TCCCE-------
T ss_pred ---------ccee------------------------------------------ccc----------CCCee-------
Confidence 0000 000 00000
Q ss_pred cccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHH
Q psy8372 602 DNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681 (883)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (883)
.| ...++.+++ +.
T Consensus 329 -------------------ri-----------~~~ea~~~l-------------------------------------~~ 341 (487)
T 1eov_A 329 -------------------RL-----------TYKEGIEML-------------------------------------RA 341 (487)
T ss_dssp -------------------EE-----------EHHHHHHHH-------------------------------------HH
T ss_pred -------------------EE-----------EHHHHHHHH-------------------------------------HH
Confidence 01 111111222 22
Q ss_pred cCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCC
Q psy8372 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPH 760 (883)
Q Consensus 682 ~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~ 760 (883)
.|++.+|.. +......+.||+++.+.+ . ..|+||+|||+. |||| |+|+
T Consensus 342 ~g~~~~~~~----d~~~~~e~~l~~~~~~~~------------~----~~~~~v~dyP~~-----------~~pfy~~~~ 390 (487)
T 1eov_A 342 AGKEIGDFE----DLSTENEKFLGKLVRDKY------------D----TDFYILDKFPLE-----------IRPFYTMPD 390 (487)
T ss_dssp TTCCCCTTC----CCCHHHHHHHHHHHHHHS------------C----CSEEEEECCBGG-----------GSCTTBCBC
T ss_pred hCCCCCccc----chhhHHHHHHHHHHHHHh------------C----CCCEEEECCccc-----------cChhhcCcC
Confidence 222222221 112345678888876533 1 247999999997 9998 8999
Q ss_pred CCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc--cHHHHHHHhhcCCCCCcceeccHHH
Q psy8372 761 PEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS--SLQHMIQAFKYGCPPHGGIALGIDR 838 (883)
Q Consensus 761 ~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~--~~~~~l~a~~~G~pPhgG~glGldR 838 (883)
++|+.+ +++|||++||+||+|||+|+|||++|+++|+.+|++++ .++|||+|++||+||||||||||||
T Consensus 391 ~~dp~~---------~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDR 461 (487)
T 1eov_A 391 PANPKY---------SNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLER 461 (487)
T ss_dssp SSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHH
T ss_pred CCCCCe---------EEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHH
Confidence 887543 58999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCC
Q psy8372 839 LMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 839 lvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||+|+|++||||||+|||+.+-
T Consensus 462 Lvmll~g~~~IRdVi~FPr~~~r 484 (487)
T 1eov_A 462 VVMFYLDLKNIRRASLFPRDPKR 484 (487)
T ss_dssp HHHHHTTCSSGGGGCSSCCBTTB
T ss_pred HHHHHcCCCcHHheeecCCCCCC
Confidence 99999999999999999998653
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-75 Score=666.55 Aligned_cols=322 Identities=33% Similarity=0.570 Sum_probs=273.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+++++....++++|+++||||||++.+++++++|++|++++|+|| .++||+||+||+|+
T Consensus 84 ~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff-~~~gF~eV~TP~l~ 162 (429)
T 1wyd_A 84 GIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETL-YKEGFIEIFTPKII 162 (429)
T ss_dssp GEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEE
T ss_pred cEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHH-hhCCCEEEECCEEE
Confidence 57899999999999988999877643347899999999999999999999999999999999999 68999999999999
Q ss_pred cCCCCCCcc-ceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHH
Q psy8372 378 KRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 378 ~~~~~ga~~-f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm 455 (883)
.++++|+.+ |.+++. +..+||+||||+|+|+ |++|++||||||||||+|+++++|| |||||+|+|++|.+++|+|
T Consensus 163 ~~~~e~~~~~f~~~~~--~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm 239 (429)
T 1wyd_A 163 ASATEGGAQLFPVIYF--GKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVM 239 (429)
T ss_dssp SSCSSTTCCCCEEEET--TEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHH
T ss_pred eeCCCCCceeEEEecC--CceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHH
Confidence 888877765 999754 6889999999999998 7888999999999999999998766 8999999999999999999
Q ss_pred HHHHHHHHHHhcc---------------C---CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI---------------P---TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLP 517 (883)
Q Consensus 456 ~~~E~li~~i~~~---------------~---~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~ 517 (883)
+++|+|++++++. + +.||+||||.||++.|.... +.
T Consensus 240 ~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g------------~~-------------- 293 (429)
T 1wyd_A 240 QLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKG------------YN-------------- 293 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSS------------CC--------------
T ss_pred HHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcC------------CC--------------
Confidence 9999999999863 2 36999999999999863110 00
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEee
Q psy8372 518 RRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQ 597 (883)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (883)
+. |
T Consensus 294 ---------------~~------~-------------------------------------------------------- 296 (429)
T 1wyd_A 294 ---------------IK------F-------------------------------------------------------- 296 (429)
T ss_dssp ---------------CC------T--------------------------------------------------------
T ss_pred ---------------cc------c--------------------------------------------------------
Confidence 00 0
Q ss_pred eccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHH
Q psy8372 598 IKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEE 677 (883)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (883)
|.++ +
T Consensus 297 -----------------~~~l------------~---------------------------------------------- 301 (429)
T 1wyd_A 297 -----------------GDDI------------G---------------------------------------------- 301 (429)
T ss_dssp -----------------TSCC------------C----------------------------------------------
T ss_pred -----------------Cccc------------C----------------------------------------------
Confidence 0000 0
Q ss_pred HHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-
Q psy8372 678 FRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF- 756 (883)
Q Consensus 678 ~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF- 756 (883)
......|++ .+ .+ .|+||+|||++ +|||
T Consensus 302 --------------------~~~e~~l~~------------~~----~~----~p~fv~d~P~~-----------~~pfy 330 (429)
T 1wyd_A 302 --------------------TPELRILNE------------EL----KE----DLYFIVDWPSD-----------ARPFY 330 (429)
T ss_dssp --------------------HHHHHHHHH------------HH----CC----SEEEEECCBGG-----------GSCTT
T ss_pred --------------------cHHHHHHHH------------Hh----cc----CCEEEecCChh-----------hChhh
Confidence 000112221 11 11 46999999998 8999
Q ss_pred CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccH
Q psy8372 757 TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGI 836 (883)
Q Consensus 757 t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGl 836 (883)
++++++|+.+ +++|||++||+||+|||+|+|||++|+++|+.+|++++.|+|||+|++||+||||||||||
T Consensus 331 ~~~~~~~p~~---------~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGi 401 (429)
T 1wyd_A 331 TKSKSENPEL---------SESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGL 401 (429)
T ss_dssp BCBCCC-CCB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEH
T ss_pred CCcCCCCCCe---------EEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcH
Confidence 7788776543 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCCCC
Q psy8372 837 DRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 837 dRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||+|+|+|++||||||+|||+++-
T Consensus 402 DRLvmll~g~~~Irdvi~FP~~~~~ 426 (429)
T 1wyd_A 402 ARLMVMLTGIQSVKEIVPFPRDKKR 426 (429)
T ss_dssp HHHHHHHHCCCCGGGTSSSCCBTTB
T ss_pred HHHHHHHcCCCcHHhEEecCCCCCC
Confidence 9999999999999999999999754
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-74 Score=667.11 Aligned_cols=327 Identities=28% Similarity=0.491 Sum_probs=256.0
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc-----------------------------------------------------
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY----------------------------------------------------- 323 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~----------------------------------------------------- 323 (883)
+++||.++++++++++..++|+.+++.
T Consensus 138 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 217 (548)
T 3i7f_A 138 QDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQ 217 (548)
T ss_dssp CSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCC
T ss_pred CcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 468899999999999888888886431
Q ss_pred --CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceeccCCCCceeeE
Q psy8372 324 --NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVPTHEPNKFYSL 400 (883)
Q Consensus 324 --~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~~~~~~~~~~L 400 (883)
...++++||++||||||++.++++|++||+|+++||+|| +++||+||+||+|++++++ ||+.|.++++ +..+||
T Consensus 218 ~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~~~~egga~~F~v~~~--~~~~yL 294 (548)
T 3i7f_A 218 KYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFL-TSQKFVEIHTPKLIGCSSEGGSNIFEVKYF--DRKAYL 294 (548)
T ss_dssp CCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSBC---------------------CCB
T ss_pred ccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEeCCEEecccCCCCcceeEEecC--CCceEe
Confidence 135789999999999999999999999999999999999 6899999999999988765 7788999876 466899
Q ss_pred ecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHHHHHHHHHHHHHHHhccCC--------
Q psy8372 401 VQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRDDVMRLIEELLCYCLNIPT-------- 470 (883)
Q Consensus 401 ~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~~~-------- 470 (883)
+||||||||++|++|++||||||||||||+++++|| |||||||+||+|. +++|+|+++|+||+++++.+.
T Consensus 295 ~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~ 374 (548)
T 3i7f_A 295 AQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELK 374 (548)
T ss_dssp CSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999987776 9999999999998 699999999999999886531
Q ss_pred -------------CCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy8372 471 -------------RTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSV 537 (883)
Q Consensus 471 -------------~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 537 (883)
.||+||||.||++.+
T Consensus 375 ~~~~~~~~~~~~~~pf~rit~~eai~~l---------------------------------------------------- 402 (548)
T 3i7f_A 375 VIRKQYPFEDLIYRPFLRLTYKEAIEML---------------------------------------------------- 402 (548)
T ss_dssp HHHHHSCCCCCCCCSCEEEEHHHHHHHH----------------------------------------------------
T ss_pred HhhhcCCccccccCCcceeEHHHHHHHH----------------------------------------------------
Confidence 244444444444432
Q ss_pred cccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCcc
Q psy8372 538 LGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGED 617 (883)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (883)
T Consensus 403 -------------------------------------------------------------------------------- 402 (548)
T 3i7f_A 403 -------------------------------------------------------------------------------- 402 (548)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCc
Q psy8372 618 VYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQ 697 (883)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 697 (883)
++.. . .++.++ +..
T Consensus 403 -------------------------~~~g-~----------------------------------~~~~~~------dl~ 416 (548)
T 3i7f_A 403 -------------------------RASG-E----------------------------------TIGDYD------DFT 416 (548)
T ss_dssp -------------------------HHTT-C----------------------------------CCCTTC------CCC
T ss_pred -------------------------HHcC-C----------------------------------CCCCcc------ccc
Confidence 1100 0 000000 001
Q ss_pred hhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccc
Q psy8372 698 EDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRG 776 (883)
Q Consensus 698 ~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~ 776 (883)
......||++..+.+ .. .+++|+|||.. .+|| ++++++|+.+ +
T Consensus 417 ~~~e~~l~~~i~~~~------------~~----~~~~i~~yP~~-----------~~pfYak~~~~dp~~---------~ 460 (548)
T 3i7f_A 417 TPQEVKLGELIKAKY------------NT----DFYILDKFPAA-----------IRPFYTMPDIDDPNY---------S 460 (548)
T ss_dssp HHHHHHHHHHHHHHH------------CC----SEEEEECCBGG-----------GSCTTBCBCSSCTTB---------B
T ss_pred hHHHHHHHHHHHHHc------------CC----CeEEEecCccc-----------cCchhhccCCCCCCe---------E
Confidence 123345666554433 12 25778999986 7999 7788887665 4
Q ss_pred eeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCC
Q psy8372 777 LHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856 (883)
Q Consensus 777 ~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FP 856 (883)
++|||+++|.||+|||+|+|||++|+++|+..|++++.++|||+|++||||||||||||||||+|+|+|++||||||+||
T Consensus 461 ~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FP 540 (548)
T 3i7f_A 461 NSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFP 540 (548)
T ss_dssp SEEEEEETTEEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSC
T ss_pred EEEEEEECCEEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy8372 857 KGFG 860 (883)
Q Consensus 857 k~~~ 860 (883)
|+.+
T Consensus 541 R~p~ 544 (548)
T 3i7f_A 541 RDPI 544 (548)
T ss_dssp CBTT
T ss_pred CCCC
Confidence 9864
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-74 Score=654.21 Aligned_cols=318 Identities=26% Similarity=0.454 Sum_probs=270.3
Q ss_pred ceEEEEeeeeeecccCCCCCc--cccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 298 SKEVIASNITVLNKADVNIPF--HIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~--~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
++||.++++++++++ .++|+ ..+ ..++++|+++||||||++.+++++++|+.|++++|+|| .++||+||+||+
T Consensus 87 ~~el~~~~~~vl~~~-~~~P~~~~~~---~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f-~~~gF~eVeTP~ 161 (434)
T 1x54_A 87 GAEVHVEKLEVIQAV-SEFPIPENPE---QASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWL-LKDGWHEVFPPI 161 (434)
T ss_dssp GEEEEEEEEEEEECC-SCCSSCSSGG---GSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCS
T ss_pred cEEEEEeEEEEeecC-CCCCCccccc---CCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCcE
Confidence 689999999999999 88998 443 36799999999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCcc-ceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHH
Q psy8372 376 LFKRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDD 453 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~d 453 (883)
|+.+.++|+.+ |.+++. +..+||+||||+|+|+ |+++++||||||||||+|+++++|| |||||+|+|++|.+++|
T Consensus 162 l~~~~~e~~~~~f~~~~~--~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 238 (434)
T 1x54_A 162 LVTGAVEGGATLFKLKYF--DKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWD 238 (434)
T ss_dssp EESCCSSCGGGCCEEEET--TEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHH
T ss_pred EEeecCCCCceeEEEeec--CCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHH
Confidence 99888887765 988754 6789999999999998 7788999999999999999998766 89999999999999999
Q ss_pred HHHHHHHHHHHHhccC---------------------CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCC
Q psy8372 454 VMRLIEELLCYCLNIP---------------------TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGY 512 (883)
Q Consensus 454 vm~~~E~li~~i~~~~---------------------~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~ 512 (883)
+|+++|+|++++++.+ +.||+||||.||++.|.... +.
T Consensus 239 lm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g------------~~--------- 297 (434)
T 1x54_A 239 IMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKG------------VN--------- 297 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTT------------CC---------
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcC------------CC---------
Confidence 9999999999998641 34899999999998863210 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccce
Q psy8372 513 PTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRT 592 (883)
Q Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (883)
+. |
T Consensus 298 --------------------~~------~--------------------------------------------------- 300 (434)
T 1x54_A 298 --------------------VE------W--------------------------------------------------- 300 (434)
T ss_dssp --------------------CC------T---------------------------------------------------
T ss_pred --------------------cc------c---------------------------------------------------
Confidence 00 0
Q ss_pred eEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCCh
Q psy8372 593 TVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672 (883)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (883)
|.++ +
T Consensus 301 ----------------------~~dl------------~----------------------------------------- 305 (434)
T 1x54_A 301 ----------------------GDDL------------G----------------------------------------- 305 (434)
T ss_dssp ----------------------TCCC------------C-----------------------------------------
T ss_pred ----------------------CCcc------------C-----------------------------------------
Confidence 0000 0
Q ss_pred hhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccc
Q psy8372 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESA 752 (883)
Q Consensus 673 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~ 752 (883)
......|+ + .+. +|+||+|||++
T Consensus 306 -------------------------~~~e~~l~------------~----~~~-----~p~fv~d~P~~----------- 328 (434)
T 1x54_A 306 -------------------------ADEERVLT------------E----EFD-----RPFFVYGYPKH----------- 328 (434)
T ss_dssp -------------------------HHHHHHHH------------T----TCS-----SCEEEEEEEGG-----------
T ss_pred -------------------------hHHHHHHH------------H----HhC-----CcEEEEcCChh-----------
Confidence 00011111 1 122 35999999998
Q ss_pred ccCc-CCCCCCChhhhccCCCCccceeeEEEec-Ce-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC
Q psy8372 753 HHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLN-GN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH 829 (883)
Q Consensus 753 h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~-G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh 829 (883)
+||| ++++++|+.+ +++|||++| |+ ||+|||+|+|||++|+++|+.+|++++.|+|||+|++||+|||
T Consensus 329 ~~pfy~~~~~~~p~~---------~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~ 399 (434)
T 1x54_A 329 IKAFYMKEDPNDPRK---------VLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPH 399 (434)
T ss_dssp GSCTTBCBCSSCTTE---------EEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCE
T ss_pred hCcccCCcCCCCCCe---------EEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCc
Confidence 8999 8888776543 599999999 98 9999999999999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 830 GGIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 830 gG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
||||||||||+|+|+|++||||||+|||+++-.
T Consensus 400 ~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~ 432 (434)
T 1x54_A 400 SGFGLGVERLVAWVLKLDHIRWAALFPRTPARL 432 (434)
T ss_dssp EEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBC
T ss_pred eEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCC
Confidence 999999999999999999999999999997543
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-72 Score=651.65 Aligned_cols=350 Identities=23% Similarity=0.387 Sum_probs=283.5
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
.+++||.+++++++++|..++|+.. ++..++++|+++|||||| ++.++++|++||+|+++||+|| +++||+||+||
T Consensus 125 ~ge~ei~~~~i~~l~~~~~~lP~~~--~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~-~~~gF~EVeTP 201 (521)
T 3bju_A 125 KGELSIIPYEITLLSPCLHMLPHLH--FGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFL-DELGFLEIETP 201 (521)
T ss_dssp TCCEEEEEEEEEEEECCCSCCCCC------CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC
T ss_pred CCCEEEEEeEEEEeecCCCCCCCcc--ccccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCc
Confidence 3579999999999999988888654 335689999999999999 7999999999999999999999 68999999999
Q ss_pred eeccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHH
Q psy8372 375 TLFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRD 452 (883)
Q Consensus 375 ~l~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~ 452 (883)
+|++ +++|| ++|.++++..+..+||+||||||+|++|++|++||||||||||||+++++|+|||||||+||+|+|++
T Consensus 202 iL~~-~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~ 280 (521)
T 3bju_A 202 MMNI-IPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYH 280 (521)
T ss_dssp SEES-SCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHH
T ss_pred eeec-cCCCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHH
Confidence 9975 56664 67999877778999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----------------------CCCCceeeehHHHHHHh-CCCCCCccccchhhhhhcCCCCCC
Q psy8372 453 DVMRLIEELLCYCLNI----------------------PTRTFSRISYNDAISLY-GSDKPDLRYDCKIMIAIKEQPPWP 509 (883)
Q Consensus 453 dvm~~~E~li~~i~~~----------------------~~~~f~rity~ea~~~y-g~~~~d~r~~~~~~~~~~~~~~~~ 509 (883)
|+|+++|+||+++++. ++.||+|+||.||++.+ |.+.++
T Consensus 281 dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~------------------ 342 (521)
T 3bju_A 281 DLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPE------------------ 342 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHhCCCCCc------------------
Confidence 9999999999999863 34689999999999886 322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccc
Q psy8372 510 SGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRA 589 (883)
Q Consensus 510 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (883)
+.++
T Consensus 343 ------------------------------------------------------~~~l---------------------- 346 (521)
T 3bju_A 343 ------------------------------------------------------TNLF---------------------- 346 (521)
T ss_dssp ------------------------------------------------------GGGT----------------------
T ss_pred ------------------------------------------------------cccC----------------------
Confidence 0000
Q ss_pred cceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccccccccccc
Q psy8372 590 FRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKI 669 (883)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (883)
-+....+.+.+++++
T Consensus 347 ----------------------------------------~~~~~~~~l~~~~~~------------------------- 361 (521)
T 3bju_A 347 ----------------------------------------ETEETRKILDDICVA------------------------- 361 (521)
T ss_dssp ----------------------------------------TSHHHHHHHHHHHHH-------------------------
T ss_pred ----------------------------------------CcHHHHHHHHHHHHH-------------------------
Confidence 000112233333332
Q ss_pred CChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCc
Q psy8372 670 LPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTL 749 (883)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~ 749 (883)
.+++. ... ...|.+..+++ ++.+++.+.+| +||+|||..
T Consensus 362 ------------~~~~~--------~~~----~~~~~~l~~~~----e~~ve~~l~~P-----~fI~dyP~~-------- 400 (521)
T 3bju_A 362 ------------KAVEC--------PPP----RTTARLLDKLV----GEFLEVTCINP-----TFICDHPQI-------- 400 (521)
T ss_dssp ------------TTCCC--------CSC----CCHHHHHHHHH----HHHTGGGCCSC-----EEEECCBGG--------
T ss_pred ------------cCCCC--------CCC----CCHHHHHHHHH----HHHHHHhcCCc-----EEEECCccc--------
Confidence 11110 000 01234433333 35556666555 999999997
Q ss_pred cccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC------CCCccc--HHHHHHH
Q psy8372 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL------NIETSS--LQHMIQA 821 (883)
Q Consensus 750 ~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~------~~~~~~--~~~~l~a 821 (883)
.+||++++++|+.+ +++|||+++|.||+|||+|+|||++|+++|+.. |.+++. ++|||+|
T Consensus 401 ---~spla~~~~~dp~~---------~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~a 468 (521)
T 3bju_A 401 ---MSPLAKWHRSKEGL---------TERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTA 468 (521)
T ss_dssp ---GCTTBCBCSSSTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHH
T ss_pred ---cCcccccCCCCCCe---------eeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHH
Confidence 79999999887654 489999999999999999999999999999543 777765 6999999
Q ss_pred hhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 822 FKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 822 ~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
++||||||||||||||||||+|||++||||||+||++++.
T Consensus 469 l~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 469 LEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred HhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 9999999999999999999999999999999999999875
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-71 Score=628.90 Aligned_cols=326 Identities=29% Similarity=0.421 Sum_probs=262.9
Q ss_pred cceEEEEeeeeeecccCC--CCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 297 LSKEVIASNITVLNKADV--NIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~--~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
+++||.++++++++++.. .+|+..+ ..++++|+++||||||++.++++|++||+|++++|+|| +++||+||+||
T Consensus 82 g~~El~~~~~~vl~~~~p~~~~pl~~~---~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff-~~~gFlEVeTP 157 (435)
T 2xgt_A 82 NGHELIADFWKIIGNAPPGGIDNVLNE---EASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHF-YNAGYVEVAPP 157 (435)
T ss_dssp TTEEEEEEEEEEEECCCTTHHHHHCC-----CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC
T ss_pred CcEEEEEEEEEEeecCCCccccccccc---CCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECC
Confidence 468999999999998521 1233222 46799999999999999999999999999999999999 68999999999
Q ss_pred eeccCCCCCC-ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHH
Q psy8372 375 TLFKRTPGGA-REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRD 452 (883)
Q Consensus 375 ~l~~~~~~ga-~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~ 452 (883)
+|++++++|+ ..|.+++. +.++||+||||+|||++|+ |++||||||||||||+++++|| |||||||+||+|+|++
T Consensus 158 iL~~s~~eG~~~~F~~~~~--g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~ 234 (435)
T 2xgt_A 158 TLVQTQVEGGSTLFNLDYF--GEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLD 234 (435)
T ss_dssp SEESCCSSCTTSCCEEEET--TEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHH
T ss_pred eEeeccCCCchhceeeccC--CcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecCCHH
Confidence 9998876655 67988864 7889999999999999875 6999999999999999998766 7999999999999999
Q ss_pred HHHHHHHHHHHHHhcc--------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCC
Q psy8372 453 DVMRLIEELLCYCLNI--------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGY 512 (883)
Q Consensus 453 dvm~~~E~li~~i~~~--------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~ 512 (883)
|+|+++|+||+++++. ++.||+||||.||++.+.... +...
T Consensus 235 d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~------------~~~~------- 295 (435)
T 2xgt_A 235 DLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHN------------VENE------- 295 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTT------------CBCT-------
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcC------------CCcc-------
Confidence 9999999999998763 126999999999998753210 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccce
Q psy8372 513 PTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRT 592 (883)
Q Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (883)
.. ..+
T Consensus 296 --------------------~~------------------------------~~~------------------------- 300 (435)
T 2xgt_A 296 --------------------FG------------------------------NTF------------------------- 300 (435)
T ss_dssp --------------------TS------------------------------CBC-------------------------
T ss_pred --------------------cc------------------------------ccc-------------------------
Confidence 00 000
Q ss_pred eEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCCh
Q psy8372 593 TVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672 (883)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (883)
.+|.++
T Consensus 301 --------------------~~g~~l------------------------------------------------------ 306 (435)
T 2xgt_A 301 --------------------TYGEDI------------------------------------------------------ 306 (435)
T ss_dssp --------------------CTTSCC------------------------------------------------------
T ss_pred --------------------chhhHH------------------------------------------------------
Confidence 000000
Q ss_pred hhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccc
Q psy8372 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESA 752 (883)
Q Consensus 673 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~ 752 (883)
.......|. + .+. .++||+|||+.
T Consensus 307 ------------------------~~~~e~~l~------------~----~~~-----~p~fv~d~P~~----------- 330 (435)
T 2xgt_A 307 ------------------------AEAAERFMT------------D----TIN-----KPILLNRFPSE----------- 330 (435)
T ss_dssp ------------------------CHHHHHHHH------------H----HHT-----SCEEEECCBGG-----------
T ss_pred ------------------------HHHHHHHHH------------H----hcC-----CcEEEECCChh-----------
Confidence 000011111 1 122 34999999996
Q ss_pred ccCcCCC-CCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCc
Q psy8372 753 HHPFTQP-HPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHG 830 (883)
Q Consensus 753 h~PFt~p-~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhg 830 (883)
.+||+++ +++|+.+ +++|||++||+ ||+|||+|+||+++|+++|+.+|+++++|+|||+|++||+||||
T Consensus 331 ~~~f~a~~~~~~p~~---------~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhg 401 (435)
T 2xgt_A 331 IKAFYMQRDAQDNTL---------TESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHG 401 (435)
T ss_dssp GSCTTBCBCSSCTTB---------BSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEE
T ss_pred hCcccCCCCCCCcCe---------EEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCc
Confidence 6899654 5554432 69999999996 99999999999999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 831 G~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
|||||||||+|+|+|++||||||+|||+.+-.
T Consensus 402 G~glGiDRLvmll~g~~~Irdvi~FPr~~~~~ 433 (435)
T 2xgt_A 402 GYGLGLERFICWLTNTNHIRDVCLYPRFVGRC 433 (435)
T ss_dssp EEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBC
T ss_pred eEEEhHHHHHHHHcCCCcHHhEecccCCcCCC
Confidence 99999999999999999999999999987543
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-70 Score=622.96 Aligned_cols=322 Identities=28% Similarity=0.473 Sum_probs=265.1
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.++++++++++..++|.... ...++++|+++||||+|++.++++|++||+|++++|+|| +++||+||+||+|
T Consensus 107 g~~El~~~~i~vl~~a~~~~~~~~~--~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff-~~~gF~EVeTPiL 183 (456)
T 3m4p_A 107 LNLEMQVTEWKVIGESPIDLENIIN--KDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYY-HDNHFTEIQPPTI 183 (456)
T ss_dssp CSSEEEEEEEEEEECCCGGGTTTSC--TTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSE
T ss_pred CcEEEEEeEEEEEecCCCCCccccc--ccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEeCCee
Confidence 5789999999999999655553332 346789999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCC-CCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHH
Q psy8372 377 FKRTPG-GAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~-ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dv 454 (883)
++++++ |+..|.+.++ +..+||+||||||||++|+ |++||||||||||||+++++|| |||||||+||+|.|++|+
T Consensus 184 ~~s~~eGg~~~f~~~~~--~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~ 260 (456)
T 3m4p_A 184 VKTQCEGGSTLFKLQYF--NEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDL 260 (456)
T ss_dssp EC------CCCCEEEET--TEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHH
T ss_pred ecCCCCCcccccccccc--CCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHH
Confidence 988765 5566988765 6889999999999998775 6999999999999999998777 899999999999999999
Q ss_pred HHHHHHHHHHHhcc------------------CCCCceeeehHHHHHHh---CCCCCCccccchhhhhhcCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI------------------PTRTFSRISYNDAISLY---GSDKPDLRYDCKIMIAIKEQPPWPSGYP 513 (883)
Q Consensus 455 m~~~E~li~~i~~~------------------~~~~f~rity~ea~~~y---g~~~~d~r~~~~~~~~~~~~~~~~~~~p 513 (883)
|+++|+||+++++. ++.||+||||.||++.+ |.+.++ .
T Consensus 261 m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~-------------~-------- 319 (456)
T 3m4p_A 261 LNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD-------------K-------- 319 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS-------------S--------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc-------------c--------
Confidence 99999999999864 35699999999999864 211000 0
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhcccccee
Q psy8372 514 TRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTT 593 (883)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (883)
... |
T Consensus 320 ------------------~~~------~---------------------------------------------------- 323 (456)
T 3m4p_A 320 ------------------PFE------Y---------------------------------------------------- 323 (456)
T ss_dssp ------------------CCC------T----------------------------------------------------
T ss_pred ------------------Ccc------h----------------------------------------------------
Confidence 000 0
Q ss_pred EEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChh
Q psy8372 594 VLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDL 673 (883)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (883)
|.++ .
T Consensus 324 ---------------------g~~l------------~------------------------------------------ 328 (456)
T 3m4p_A 324 ---------------------GEDI------------S------------------------------------------ 328 (456)
T ss_dssp ---------------------TCCC------------C------------------------------------------
T ss_pred ---------------------HHHH------------H------------------------------------------
Confidence 0000 0
Q ss_pred hHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccc
Q psy8372 674 NVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAH 753 (883)
Q Consensus 674 ~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h 753 (883)
......++. .+.+| +||+|||.. .
T Consensus 329 ------------------------~~~e~~l~~----------------~~~~P-----~fv~~yP~~-----------~ 352 (456)
T 3m4p_A 329 ------------------------EKPERQMTD----------------EIGCP-----IFMIHFPSK-----------M 352 (456)
T ss_dssp ------------------------HHHHHHHHH----------------HHTSC-----EEEECCBGG-----------G
T ss_pred ------------------------HHHHHHHHH----------------HhCce-----EEEECCCch-----------h
Confidence 001111111 23334 899999986 7
Q ss_pred cCc-CCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcc
Q psy8372 754 HPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 754 ~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG 831 (883)
.|| ++++++|+.+ +++|||+++|+ ||+|||+|+|||++|+++|+..|++++.++|||+|++||+|||||
T Consensus 353 ~pfy~k~~~~dp~~---------~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG 423 (456)
T 3m4p_A 353 KAFYMSKVPGHPDL---------TESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGG 423 (456)
T ss_dssp SCTTBCEETTEEEE---------ECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEE
T ss_pred CccccccCCCCCCe---------eEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccE
Confidence 898 7778887665 48999999996 999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
||||||||+|+++|++||||||+|||+.+-
T Consensus 424 ~GlGidRLvm~ltg~~~Irdvi~FPr~~~r 453 (456)
T 3m4p_A 424 YGLGVERLVMWLLGEDHIRKVCLYPRYLER 453 (456)
T ss_dssp EEEEHHHHHHHHHTCSCGGGGSSSCBBTTB
T ss_pred EEEcHHHHHHHHcCCccHHHeeccCCCCCC
Confidence 999999999999999999999999998643
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-67 Score=579.31 Aligned_cols=300 Identities=23% Similarity=0.329 Sum_probs=237.1
Q ss_pred cChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC--CccceeccCC----CCceeeEecCHHHHHHHHHc
Q psy8372 340 RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTHE----PNKFYSLVQSPQQLKQLLMV 413 (883)
Q Consensus 340 r~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g--a~~f~v~~~~----~~~~~~L~~Spql~kq~l~~ 413 (883)
|+. .++++++||+|+++||+|| +++||+||+||+|++++++| +.+|.+.++. .+..+||+||||+|||++|+
T Consensus 29 ~~~-~~~~lr~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 29 PSA-SIPNLLKRAAIMAEIRRFF-ADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp CSS-CHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred Cch-HHHHHHHHHHHHHHHHHHH-HHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHH
Confidence 444 8899999999999999999 68999999999999887764 4579988763 23668899999999999999
Q ss_pred cCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHh-CCCCCCc
Q psy8372 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLY-GSDKPDL 492 (883)
Q Consensus 414 ~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~y-g~~~~d~ 492 (883)
+|++||||||||||||+++++|+|||||||+|++|.|++|+|+++|+||+++++. .||+||||.||+++| |.|+|+.
T Consensus 107 ~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~--~~~~rity~ea~~~~~g~d~~~~ 184 (345)
T 3a5y_A 107 AGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--PAAESLSYQQAFLRYLEIDPLSA 184 (345)
T ss_dssp TTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC--CCCEEEEHHHHHHHHTCCCTTCC
T ss_pred cCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC--CCCcEeeHHHHHHHHhCCCCCCC
Confidence 9999999999999999998888899999999999999999999999999999985 499999999999998 7765531
Q ss_pred cccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhh
Q psy8372 493 RYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHI 572 (883)
Q Consensus 493 r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (883)
+ +.+.
T Consensus 185 -------~-~~~l------------------------------------------------------------------- 189 (345)
T 3a5y_A 185 -------D-KTQL------------------------------------------------------------------- 189 (345)
T ss_dssp -------C------------------------------------------------------------------------
T ss_pred -------C-HHHH-------------------------------------------------------------------
Confidence 0 0000
Q ss_pred hcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcce
Q psy8372 573 QFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMS 652 (883)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (883)
.+++++. | +.
T Consensus 190 ------------------------------------------------------------------~~~~~~~-g---~~ 199 (345)
T 3a5y_A 190 ------------------------------------------------------------------REVAAKL-D---LS 199 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------HHHHHHc-C---Cc
Confidence 0000000 0 00
Q ss_pred EEEecCcccccccccccCChhhHHHHHHHcCCCCC-cEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCcc
Q psy8372 653 TVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEG-DLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFS 731 (883)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~ 731 (883)
| ++.+ + +........++ +.+++.+. ..+
T Consensus 200 ---------~---------------------~~~~~~------~~~~~~e~~l~------------~~ve~~lg---~~~ 228 (345)
T 3a5y_A 200 ---------N---------------------VADTEE------DRDTLLQLLFT------------FGVEPNIG---KEK 228 (345)
T ss_dssp ----------------------------------------------HHHHHHHH------------HHTGGGSS---SSS
T ss_pred ---------c---------------------cCCCcC------CHhHHHHHHHH------------HHHHHHcC---CCC
Confidence 0 0000 0 00000111111 22333342 124
Q ss_pred EEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC---
Q psy8372 732 IFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL--- 808 (883)
Q Consensus 732 f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~--- 808 (883)
|+||+|||++ ..||++++++|+.+ +++|||++||+||+|||+|+||+++|+++|+..
T Consensus 229 p~fv~dyP~~-----------~~~~~~~~~~~~~~---------a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~ 288 (345)
T 3a5y_A 229 PTFVYHFPAS-----------QASLAQISTEDHRV---------AERFEVYYKGIELANGFHELTDAREQQQRFEQDNRK 288 (345)
T ss_dssp CEEEECCBGG-----------GCTTBCBCSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCChh-----------hChhhCCCCCCCCe---------EEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHH
Confidence 6999999998 68999887766432 689999999999999999999999999999664
Q ss_pred ----CCCcccH-HHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 809 ----NIETSSL-QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 809 ----~~~~~~~-~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
|++++.+ +|||+|++||+|||||||||||||||+|+|++||||||+|||++
T Consensus 289 ~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 289 RAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 8888887 69999999999999999999999999999999999999999985
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-58 Score=500.11 Aligned_cols=266 Identities=24% Similarity=0.352 Sum_probs=230.4
Q ss_pred ccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCCCccceeccCCCCceeeEecCH
Q psy8372 333 KHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGGAREFVVPTHEPNKFYSLVQSP 404 (883)
Q Consensus 333 ~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~ga~~f~v~~~~~~~~~~L~~Sp 404 (883)
+|||||+|++ +++++++|+.|++++|+|| .++||+||+||+|+.+ .++||+.|.+++. ++.++|++||
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f-~~~GF~EVeTP~l~~~~~~~~~~~~~e~a~~f~~~~~--~~~~~L~~Sp 76 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIY--GVKMRLTHSM 76 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEET--TEEEEECSCS
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHH-HHCCCEEEECCEEEEccchhccCCCCCcceeEEEEcC--CCCEEeccCh
Confidence 5899999999 9999999999999999999 6899999999999998 7788888988754 5788999999
Q ss_pred HHHHHHHHccCCCcEEEEeeceecCC--CCCCCC-cceecccccccCCCHHHHHHHHHHHHHHHhccC--------C--C
Q psy8372 405 QQLKQLLMVGSVDRYFQIARCYRDES--TRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP--------T--R 471 (883)
Q Consensus 405 ql~kq~l~~~~~~rvf~I~~~FR~E~--~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~--------~--~ 471 (883)
|+|+|++++++++|||+||||||+|+ +++.|| |||||+|+|++|.|++|+|+++|+|+++++..+ + .
T Consensus 77 e~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~~ 156 (294)
T 1nnh_A 77 ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK 156 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCS
T ss_pred HHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Confidence 99999999999999999999999999 876555 899999999999999999999999999998532 1 2
Q ss_pred CceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchh
Q psy8372 472 TFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYF 551 (883)
Q Consensus 472 ~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (883)
+|+|+||.||++.||. . .
T Consensus 157 ~~~r~~y~ea~~~~g~------------~--------------------------------~------------------ 174 (294)
T 1nnh_A 157 RFEVFEYSEVLEEFGS------------D--------------------------------E------------------ 174 (294)
T ss_dssp SCEEEEHHHHHHHTSS------------H--------------------------------H------------------
T ss_pred CceEeEHHHHHHHhCC------------h--------------------------------H------------------
Confidence 3788888887765432 0 0
Q ss_pred hhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccc
Q psy8372 552 IREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDST 631 (883)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (883)
T Consensus 175 -------------------------------------------------------------------------------- 174 (294)
T 1nnh_A 175 -------------------------------------------------------------------------------- 174 (294)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHh
Q psy8372 632 NKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSES 711 (883)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~ 711 (883)
.+ +
T Consensus 175 ---------------------------------------------------------------------er--~------ 177 (294)
T 1nnh_A 175 ---------------------------------------------------------------------KA--S------ 177 (294)
T ss_dssp ---------------------------------------------------------------------HH--H------
T ss_pred ---------------------------------------------------------------------hh--h------
Confidence 00 0
Q ss_pred hhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEec-Ce-EEe
Q psy8372 712 HKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLN-GN-EIG 789 (883)
Q Consensus 712 ~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~-G~-Ei~ 789 (883)
+ .+. .++||+||| +||+++. |+.+ +.+|||+++ |+ ||+
T Consensus 178 ------~----~~~-----~P~~v~~~P--------------~pf~~~~--d~~~---------~~~~Dl~~~~g~~Ei~ 217 (294)
T 1nnh_A 178 ------Q----EME-----EPFWIINIP--------------REFYDRE--VDGF---------WRNYDLILPYGYGEVA 217 (294)
T ss_dssp ------H----HCS-----SCEEEECCC--------------CCTTBCE--ETTE---------ECEEEEEETTTTEEEE
T ss_pred ------h----hcC-----CCEEEEcCC--------------hHHhCCC--CCCe---------EEEEEEEECCCcEEEe
Confidence 0 011 248999999 4888874 3322 589999999 98 999
Q ss_pred eeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCC-CCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 790 GGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCP-PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 790 ~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~p-PhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||+|+|||++|.++|+..|++++.|+|||+|++||+| ||||||||||||+|+++|++||||||+|||+++-
T Consensus 218 ~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~ 290 (294)
T 1nnh_A 218 SGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290 (294)
T ss_dssp EEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred cCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCc
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999998753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=201.96 Aligned_cols=208 Identities=39% Similarity=0.689 Sum_probs=164.0
Q ss_pred CCchhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC
Q psy8372 79 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 158 (883)
Q Consensus 79 ~~~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~ 158 (883)
......||+...+||+......+....+|......+......++..+........++.+|||||||+|.++..++..+..
T Consensus 24 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 103 (241)
T 2ex4_A 24 IEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR 103 (241)
T ss_dssp CSCHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred ccccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 34567899999999999988888777777665556666777888877654333346789999999999999987777765
Q ss_pred eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEE
Q psy8372 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 159 ~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~l 238 (883)
+|+|+|+|+.|++.|+++.......++.++..|+.++.... ++||+|++..+++|+++++...++++++++|||||++
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 181 (241)
T 2ex4_A 104 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGII 181 (241)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC--CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 89999999999999999887653345678999988776543 6899999999999998866779999999999999999
Q ss_pred EEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccc
Q psy8372 239 IIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMD 289 (883)
Q Consensus 239 vi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~e 289 (883)
++.++.... ...+........++..++.++++++||+++.......+|..
T Consensus 182 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~ 231 (241)
T 2ex4_A 182 VIKDNMAQE-GVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDE 231 (241)
T ss_dssp EEEEEEBSS-SEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTT
T ss_pred EEEEccCCC-cceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCcch
Confidence 998876544 22233344455568889999999999999988777666543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=195.55 Aligned_cols=197 Identities=37% Similarity=0.617 Sum_probs=155.2
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEE
Q psy8372 84 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLL 163 (883)
Q Consensus 84 ~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gv 163 (883)
.||....+||+......+....++.............++..+. ..++.+|||||||+|.++..++..+..+|+|+
T Consensus 48 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v 122 (254)
T 1xtp_A 48 GWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGIGRITKNLLTKLYATTDLL 122 (254)
T ss_dssp CHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTST-----TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEE
T ss_pred hhhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhc-----ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEE
Confidence 5889999999998888877777666555555555555555542 24678999999999999998888876679999
Q ss_pred eCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 164 EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 164 D~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+|+.|++.|+++.... ..+.+++.|+.+++... ++||+|++..+++|++++++..++++++++|||||++++.++
T Consensus 123 D~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 123 EPVKHMLEEAKRELAGM--PVGKFILASMETATLPP--NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp ESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCC--CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999999987643 45688999988765433 689999999999999877789999999999999999999987
Q ss_pred ccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccc
Q psy8372 244 VASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMD 289 (883)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~e 289 (883)
.................++..++.++++++||+++.......+|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~ 244 (254)
T 1xtp_A 199 CSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTD 244 (254)
T ss_dssp BC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTT
T ss_pred CCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCCCCch
Confidence 5443333333344455668889999999999999988776666544
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-20 Score=205.03 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=129.3
Q ss_pred CCCCCcccccccccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHH-----HHHHHH
Q psy8372 282 KGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRF-----RSKFLM 356 (883)
Q Consensus 282 ~~~~~P~el~~~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~-----rs~i~~ 356 (883)
.+...|+..-.....+++||.++++++++++..++|+.+++. ..++++||||+|++.++++++. ++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~-----~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~ 84 (290)
T 3qtc_A 10 HGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKP-----FRELESELLSRRKKDLQQIYAEERENYLGKLER 84 (290)
T ss_dssp --------------CCCCHHHHHHHHHHCCTTCC----CCSC-----HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred cCCcccCCccccCCCceEEEEhhhhhhhccCCCCCCCCcchh-----hhhhhhHHHHhccchHHHHhccccccHHHHHHH
Confidence 344456555556667899999999999999988899887542 3489999999999999999999 999999
Q ss_pred HHHHHHhcCCCeEEEcCCeeccCCC-------CCCccceeccCCCCceeeEe--cCHHHHHHHHHc----cCCCcEEEEe
Q psy8372 357 RTREFLATHRDFVEVETPTLFKRTP-------GGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV----GSVDRYFQIA 423 (883)
Q Consensus 357 ~iR~f~~~~~gF~EV~TP~l~~~~~-------~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~----~~~~rvf~I~ 423 (883)
.+|++| .++||.||.||+|+++.. .++..+.. .+..+..++|+ +|||+++++.+. .+..|+||||
T Consensus 85 ~ir~~l-~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG 162 (290)
T 3qtc_A 85 EITRFF-VDRGFLEIKSPILIPLEYIERMGIDNDTELSKQ-IFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIG 162 (290)
T ss_dssp HHHHHH-HHTTCEEECCCSEEETHHHHHTTCCTTSSGGGG-CCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEE
T ss_pred HHHHHH-HHCCCEEEECCceeeHHHHHhcCCCcCCchhhh-heeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEc
Confidence 999999 689999999999987532 11111110 11113568999 999999887653 4457999999
Q ss_pred eceecCCCCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 424 RCYRDESTRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 424 ~~FR~E~~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
+|||+|..+.+|.+||||+|+++++.+ +.++..+++++++.+
T Consensus 163 ~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 163 PCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp EEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 999999888888899999999999975 888888888887654
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-17 Score=170.68 Aligned_cols=123 Identities=13% Similarity=0.180 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-----CCCeEEEcCCeeccCCCC------C-CccceeccC-CCCceeeEecCHHHHHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLAT-----HRDFVEVETPTLFKRTPG------G-AREFVVPTH-EPNKFYSLVQSPQQLKQLLM 412 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~-----~~gF~EV~TP~l~~~~~~------g-a~~f~v~~~-~~~~~~~L~~Spql~kq~l~ 412 (883)
..++-....+..+++|| . +.|+++|..|+++..+.| | .++..++.. .++..+-+.+|...+|++++
T Consensus 3 ~~~~~tq~aI~~iK~~f-~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL 81 (330)
T 12as_A 3 TAYIAKQRQISFVKSHF-SRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTL 81 (330)
T ss_dssp -CHHHHHHHHHHHHHHH-HHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHH
Confidence 44667778888899998 6 689999999999875322 2 223222222 23677889999999999876
Q ss_pred c-cCC---CcEEEEeeceecC-C-CCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccC
Q psy8372 413 V-GSV---DRYFQIARCYRDE-S-TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP 469 (883)
Q Consensus 413 ~-~~~---~rvf~I~~~FR~E-~-~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~ 469 (883)
. .+| +.+|+-+++.|.+ + .++.|.-+|+|.|||......+..|+.++++++.|+..+
T Consensus 82 ~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~i 144 (330)
T 12as_A 82 GQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGI 144 (330)
T ss_dssp HHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHH
Confidence 5 347 8999999999984 4 466666999999999999999999999999988887664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=169.64 Aligned_cols=144 Identities=16% Similarity=0.211 Sum_probs=117.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.. .+.++++|+.+++... ++||+|++..+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP-----SVTFHHGTITDLSDSP--KRWAGLLAWYSLI 113 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT-----TSEEECCCGGGGGGSC--CCEEEEEEESSST
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC-----CCeEEeCcccccccCC--CCeEEEEehhhHh
Confidence 67999999999999998888866 59999999999999998743 4578999988865433 7899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
|++.+++..++++++++|||||.+++.++..................+..++.++++++||+++........
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 114 HMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp TCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 998667899999999999999999999876654332222333344557889999999999999987665443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-17 Score=172.72 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=111.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++.+|||||||+|..+..++.... .+|+|+|+|+.|++.|++++.... ..+++++++|+.+++. +.||+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----~~~d~v~ 144 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMVV 144 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----CSEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----cccccce
Confidence 5788999999999999988877632 179999999999999999987653 3467899999988754 3699999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc----------------ccCC----------ccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------------YDDE----------DSSVVRS 262 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~----------------~~~~----------~~~~~~s 262 (883)
++.++||+++++...++++++++|||||.|++.+......... +... ......+
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 9999999998778899999999999999999988654332100 0000 0011235
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
.+++.++|+++||+.+..
T Consensus 225 ~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 225 VETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 667888899999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-17 Score=166.62 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~ 197 (883)
...++..+.. .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.. .+++++.+|+.+++.
T Consensus 34 ~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~ 103 (220)
T 3hnr_A 34 YEDILEDVVN-----KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEV 103 (220)
T ss_dssp HHHHHHHHHH-----TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCC
T ss_pred HHHHHHHhhc-----cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCC
Confidence 3445555543 3677999999999999998888755 69999999999999998865 356889999988754
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------c---------cCCccccccc
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------Y---------DDEDSSVVRS 262 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~---------~~~~~~~~~s 262 (883)
. ++||+|++..+++|+++.+...++++++++|||||.+++.++........ + .......+.+
T Consensus 104 ~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (220)
T 3hnr_A 104 P---TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTR 180 (220)
T ss_dssp C---SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCB
T ss_pred C---CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCC
Confidence 3 58999999999999988555569999999999999999998654332110 0 0011123447
Q ss_pred chhhhhhhhhcccccccccCC
Q psy8372 263 LPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~~~~ 283 (883)
.+++..+++++||+++.....
T Consensus 181 ~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 181 IPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHTTEEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEeecc
Confidence 789999999999998876654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-17 Score=167.58 Aligned_cols=147 Identities=24% Similarity=0.294 Sum_probs=115.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|+++..... +++++++|+.++++. ++||+|++.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~v~~~ 116 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---EKYDMVVSA 116 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---SCEEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---CCceEEEEe
Confidence 35678999999999999998888753 379999999999999999876543 678999999887654 589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------------------------cccCCcccccccchh
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------------------------EYDDEDSSVVRSLPQ 265 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~ 265 (883)
.+++|+++++...++++++++|||||.+++.++....... .+.........+.++
T Consensus 117 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (234)
T 3dtn_A 117 LSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ 196 (234)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence 9999998766668999999999999999999866433210 001112233346779
Q ss_pred hhhhhhhcccccccccCC
Q psy8372 266 FCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 266 ~~~l~~~aGf~vv~~~~~ 283 (883)
+.++++++||+.+.....
T Consensus 197 ~~~ll~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 197 QLNWLKEAGFRDVSCIYK 214 (234)
T ss_dssp HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHcCCCceeeeee
Confidence 999999999999876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=163.73 Aligned_cols=140 Identities=17% Similarity=0.288 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++. .+.+..+|+.+++. +++||+|++..+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---~~~fD~v~~~~~ 111 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---IDAYDAVWAHAC 111 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---CSCEEEEEECSC
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---CCcEEEEEecCc
Confidence 4678999999999999998888765 6999999999999999986 23578888887762 369999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc-cccccccCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN-LKCVKSEKG 283 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG-f~vv~~~~~ 283 (883)
++|++++++..++++++++|||||++++............ ........+.+++.++++++| |+++.....
T Consensus 112 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 112 LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-LARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-TSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-cchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 9999877799999999999999999999876544321111 112223457889999999999 999876543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=163.08 Aligned_cols=145 Identities=10% Similarity=-0.003 Sum_probs=110.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.+|||+|||+|..+..++..|+ +|+|+|+|+.|++.|+++.... ....++++++|+.++++..
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~- 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD- 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc-
Confidence 4678999999999999999988876 5999999999999999886431 1346789999999876431
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.++||+|++..+++|++.++...++++++++|||||++++........ ......+..+.+++.+++.+ ||+++..
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~----~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA----LLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS----SSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc----ccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 148999999999999988777889999999999999855544332211 01111223467899999998 9988765
Q ss_pred cCCC
Q psy8372 281 EKGE 284 (883)
Q Consensus 281 ~~~~ 284 (883)
....
T Consensus 174 ~~~~ 177 (203)
T 1pjz_A 174 GGQD 177 (203)
T ss_dssp EESS
T ss_pred cccc
Confidence 4433
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=171.22 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=114.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++....+. .++++..+|+.+++... ++||+|++.
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 157 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED--NSYDFIWSQ 157 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT--TCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCC--CCEeEEEec
Confidence 357789999999999999988876333699999999999999998876543 45789999998876443 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+++|+++ +..++++++++|||||++++.++....... .+.........+..++.++++++||+++...
T Consensus 158 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 158 DAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp SCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred chhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999977 889999999999999999999876443211 0001111123467789999999999987554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=165.96 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=114.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+. .++.+..+|+.+++... ++||+|++.
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 136 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED--ASFDAVWAL 136 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT--TCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC--CCccEEEEe
Confidence 356789999999999999988876545799999999999999998876543 35789999998865433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc---------cCCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY---------DDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+++|+++ +..++++++++|||||++++.++......... .........+..++.++++++||+++..
T Consensus 137 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 213 (273)
T 3bus_A 137 ESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST 213 (273)
T ss_dssp SCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred chhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 99999976 78999999999999999999987644321100 0111223456788999999999987643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=167.07 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=116.8
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKP 197 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~ 197 (883)
...+..+... ....++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+. ..+.+...|+.+++
T Consensus 50 ~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 127 (287)
T 1kpg_A 50 IAKIDLALGK-LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 127 (287)
T ss_dssp HHHHHHHHTT-TTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHH-cCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 3344444332 23356789999999999999988844334799999999999999998876533 46788899987654
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-------------------CCccc
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------------------DEDSS 258 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-------------------~~~~~ 258 (883)
++||+|++..+++|++++++..++++++++|||||.+++.++.......... .....
T Consensus 128 ----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (287)
T 1kpg_A 128 ----EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGG 203 (287)
T ss_dssp ----CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTC
T ss_pred ----CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCC
Confidence 5899999999999997666889999999999999999999876543211000 01112
Q ss_pred ccccchhhhhhhhhccccccccc
Q psy8372 259 VVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 259 ~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
...+..++.++++++||+++...
T Consensus 204 ~~~s~~~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 204 RLPSIPMVQECASANGFTVTRVQ 226 (287)
T ss_dssp CCCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEEEE
Confidence 33467788999999999886543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=164.28 Aligned_cols=141 Identities=19% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++.. ...+.++++|+.+++... ++||+|++..+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 125 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFEN--EQFEAIMAINS 125 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCT--TCEEEEEEESC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCC--CCccEEEEcCh
Confidence 4678999999999999998888865 69999999999999998752 345688999998876433 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
++|+++ +..++++++++|||||++++.++....... .+.........+..++..+++++||+++...
T Consensus 126 l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 126 LEWTEE--PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp TTSSSC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HhhccC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 999976 789999999999999999999865432211 1112222333567799999999999998654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=166.59 Aligned_cols=143 Identities=14% Similarity=0.193 Sum_probs=112.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+..++.+..+|+.+++... ++||+|++..+
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~--~~fD~V~~~~~ 112 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD--ERFHIVTCRIA 112 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC--CCEEEEEEhhh
Confidence 4678999999999999987777765 79999999999999999987665556789999998876443 69999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++ +..++++++++|||||++++.++....... ...........+..++.++++++||+++..
T Consensus 113 l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 113 AHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 999976 789999999999999999998765432210 001111223346778999999999987643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=164.30 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++.. ...+.++++|+.+++... ++||+|++..+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 117 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP--DAYNVVLSSLA 117 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT--TCEEEEEEESC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC--CCeEEEEEchh
Confidence 4678999999999999998888877689999999999999999875 345688999998776433 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-----cc---------------ccC----------Cccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-----NE---------------YDD----------EDSSVVRS 262 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-----~~---------------~~~----------~~~~~~~s 262 (883)
++|+++ +..++++++++|||||.+++..+...... .. +.. ....+.++
T Consensus 118 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 195 (253)
T 3g5l_A 118 LHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195 (253)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCC
T ss_pred hhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecC
Confidence 999966 88999999999999999999865421000 00 000 01112237
Q ss_pred chhhhhhhhhcccccccccCCC
Q psy8372 263 LPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
..++.++++++||+++......
T Consensus 196 ~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 196 VTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHHcCCeeeeeecCC
Confidence 8899999999999998776554
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=166.77 Aligned_cols=138 Identities=19% Similarity=0.177 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++... .++++++|+.++.+ +++||+|++..++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~---~~~fD~v~~~~~l 113 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL---PRRYDNIVLTHVL 113 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC---SSCEEEEEEESCG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc---CCcccEEEEhhHH
Confidence 567999999999999998877766 599999999999999988653 56889999887732 3689999999999
Q ss_pred cccChHHHHHHHHHHH-HHhccCcEEEEEecccCCCcc-------ccc----------CCcccccccchhhhhhhhhccc
Q psy8372 214 MFILDEDIIKFLNLCK-QILNKNGIIIIKDNVASGVKN-------EYD----------DEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~-r~LKPGG~lvi~~~~~~~~~~-------~~~----------~~~~~~~~s~~~~~~l~~~aGf 275 (883)
+|+++ +..++++++ ++|||||++++.++....... .+. ...+....+..++.++++++||
T Consensus 114 ~~~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 114 EHIDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp GGCSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HhhcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 99976 789999999 999999999999876543210 000 1112234477899999999999
Q ss_pred cccccc
Q psy8372 276 KCVKSE 281 (883)
Q Consensus 276 ~vv~~~ 281 (883)
+++...
T Consensus 192 ~~~~~~ 197 (250)
T 2p7i_A 192 QVTYRS 197 (250)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 987554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-16 Score=162.72 Aligned_cols=143 Identities=20% Similarity=0.131 Sum_probs=114.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...+. .++++.++|+.++++ +++||+|+|..
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~V~~~~ 111 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---NEKCDVAACVG 111 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---SSCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---CCCCCEEEECC
Confidence 56789999999999999988877544799999999999999999876543 367899999988765 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+++|+++ +..++++++++|||||++++.++....... .+.........+..++.++++++||+++..
T Consensus 112 ~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 112 ATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp CGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred ChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 9999976 789999999999999999998865432211 011112223456789999999999997653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=164.93 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=113.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++....+. .+++++.+|+.+++... ++||+|++.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~i~~~ 121 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN--EELDLIWSE 121 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--TCEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC--CCEEEEEEc
Confidence 357889999999999999988877554899999999999999999876643 45789999998876443 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-----CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+++|+ + +..++++++++|||||++++.++.......... ........+..++.++++++||+++..
T Consensus 122 ~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 122 GAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp SCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred CCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999999 4 678999999999999999999875332211000 001112346778999999999998754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=163.25 Aligned_cols=144 Identities=16% Similarity=0.206 Sum_probs=113.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|++++...+.. +++++++|+.+++... ++||+|++.
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 121 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN--EELDLIWSE 121 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT--TCEEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC--CCEEEEEec
Confidence 3567899999999999999888887658999999999999999998876543 4789999998776443 799999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--cc---CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--YD---DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--~~---~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+++|+ + +..++++++++|||||++++.++.+...... .. ........+..++.++++++||+++..
T Consensus 122 ~~l~~~-~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 122 GAIYNI-G--FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp SCSCCC-C--HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred ChHhhc-C--HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 999999 4 6789999999999999999998653322100 00 000112346789999999999998763
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=159.16 Aligned_cols=141 Identities=16% Similarity=0.251 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++ ....+++++++|+.++ .. +++||+|++..+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~--~~~~D~v~~~~~ 116 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TP--DRQWDAVFFAHW 116 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CC--SSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CC--CCceeEEEEech
Confidence 5667999999999999998888865 69999999999999988 2334578999999887 22 369999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--cccc----------CCccc------ccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYD----------DEDSS------VVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~----------~~~~~------~~~s~~~~~~l~~~aG 274 (883)
++|+++++...++++++++|||||.+++.++...... ..+. ..... .+.+..++.++++++|
T Consensus 117 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 196 (218)
T 3ou2_A 117 LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALG 196 (218)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCC
Confidence 9999886678999999999999999999987653211 0000 00111 1347789999999999
Q ss_pred ccccccc
Q psy8372 275 LKCVKSE 281 (883)
Q Consensus 275 f~vv~~~ 281 (883)
|++....
T Consensus 197 f~v~~~~ 203 (218)
T 3ou2_A 197 WSCSVDE 203 (218)
T ss_dssp EEEEEEE
T ss_pred CEEEeee
Confidence 9965443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=157.26 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=113.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC-----CccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK-----LDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|++++...... .++++++|+...+... ++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~ 105 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF--SGYDA 105 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG--TTCSE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc--CCCCE
Confidence 3567999999999999998877665 38999999999999999988654332 5688999986554333 68999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhh----hhhhhcccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFC----LLFSKANLK 276 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~----~l~~~aGf~ 276 (883)
|+|..+++|+++++...++++++++|||||.+++.......... .+...++....+..++. .+++++||+
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 99999999998766789999999999999976666543221111 11112233334666777 889999998
Q ss_pred cccccCCCCC
Q psy8372 277 CVKSEKGEFS 286 (883)
Q Consensus 277 vv~~~~~~~~ 286 (883)
+.....+...
T Consensus 186 v~~~~~g~~~ 195 (219)
T 3jwg_A 186 VRFLQIGEID 195 (219)
T ss_dssp EEEEEESCCC
T ss_pred EEEEecCCcc
Confidence 8776555443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=157.57 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=117.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ . .+|+|+|+|+.+++.|+++.......++++..+|+.+++... ++||+|++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 113 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD--NTVDFIFMA 113 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS--SCEEEEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC--CCeeEEEee
Confidence 467899999999999999888876 2 379999999999999999987766557789999998876443 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+++|+++ +..++++++++|||||.+++.++...... .........+..++..+++++||+++....
T Consensus 114 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 114 FTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERD---KGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp SCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCS---SSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccc---cCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 99999976 78999999999999999999986654331 112223344778999999999999887643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=157.06 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=113.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC-----CccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK-----LDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++...... +++++++|+...... .++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~ 105 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR--FHGYDA 105 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG--GCSCSE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc--CCCcCE
Confidence 3567999999999999998887765 38999999999999999998654332 578899998654433 268999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------ccccCCcccccccchhhh----hhhhhcccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------NEYDDEDSSVVRSLPQFC----LLFSKANLK 276 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~~~~~~~~~~~~s~~~~~----~l~~~aGf~ 276 (883)
|++..+++|+++++...++++++++|||||.+++......... ..+...++....+..++. .+++++||+
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~ 185 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYN 185 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEE
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCce
Confidence 9999999999876678999999999999997777665321100 011122333334677777 899999999
Q ss_pred cccccCCCCC
Q psy8372 277 CVKSEKGEFS 286 (883)
Q Consensus 277 vv~~~~~~~~ 286 (883)
+.....+...
T Consensus 186 v~~~~~g~~~ 195 (217)
T 3jwh_A 186 VQFQPIGEAD 195 (217)
T ss_dssp EEECCCSCCC
T ss_pred EEEEecCCcc
Confidence 9877666544
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-16 Score=166.72 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=113.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+.. ++++..+|+.++ +++||+|++.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~fD~v~~~ 144 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DEPVDRIVSL 144 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CCCCSEEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CCCccEEEEc
Confidence 3577899999999999999888872357999999999999999998876443 678999998876 2689999999
Q ss_pred ccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-------------------CCcccccccch
Q psy8372 211 WVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------------------DEDSSVVRSLP 264 (883)
Q Consensus 211 ~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-------------------~~~~~~~~s~~ 264 (883)
.+++|+++ ++...++++++++|||||++++.+........... ...+....+..
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~ 224 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRIS 224 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHH
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHH
Confidence 99999944 45689999999999999999999876543211000 11222445677
Q ss_pred hhhhhhhhcccccccc
Q psy8372 265 QFCLLFSKANLKCVKS 280 (883)
Q Consensus 265 ~~~~l~~~aGf~vv~~ 280 (883)
++.++++++||+++..
T Consensus 225 ~~~~~l~~aGf~~~~~ 240 (302)
T 3hem_A 225 QVDYYSSNAGWKVERY 240 (302)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhCCcEEEEE
Confidence 8999999999987654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=166.50 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=113.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...+. .+++++++|+.+++... +++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL-ETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC-SSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc-CCCceEEEECch
Confidence 467999999999999998888755 699999999999999999876544 46789999998876222 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc----------cc--------ccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK----------NE--------YDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~----------~~--------~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
++|+++ +..++++++++|||||.+++.++...... .. ..........+..++..+++++|
T Consensus 146 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 223 (285)
T 4htf_A 146 LEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAG 223 (285)
T ss_dssp GGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTT
T ss_pred hhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCC
Confidence 999976 78999999999999999999886532210 00 00112223457789999999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
|+++....
T Consensus 224 f~v~~~~~ 231 (285)
T 4htf_A 224 WQIMGKTG 231 (285)
T ss_dssp CEEEEEEE
T ss_pred Cceeeeee
Confidence 99875543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=163.08 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||||||+|.++..++..+.. |+|+|+|+.+++.|+++ ++++.+|+.+......+++||+|+|..+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~-v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIE-SIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCC-EEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCc-EEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 56789999999999999988888765 99999999999999876 3677888766421111368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++++...++++++++|||||++++.++....... .+....+....+..++..+++++||+++..
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 99998766899999999999999999999876543211 111223334456789999999999997644
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-16 Score=163.34 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=115.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++.... .+++++..|+.+.+... ++||+|++..
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~--~~fD~v~~~~ 128 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPE--NNFDLIYSRD 128 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCT--TCEEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCC--CcEEEEeHHH
Confidence 3567899999999999999888874347999999999999999887644 56789999998875433 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc------cCCcccccccchhhhhhhhhccccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY------DDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~------~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+++|++.+++..++++++++|||||.+++.++......... ....+....+..++.++++++||+++...
T Consensus 129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 129 AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 99999766799999999999999999999987654311100 01112234477899999999999886543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=160.57 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+..++.+..+|+.+++... ++||+|++..+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD--DSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC--CcEEEEEECCc
Confidence 5778999999999999988777764 69999999999999999987766566789999998865433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------ccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++ +..++++++++|||||++++.+......... .....+....+..+|.++++++||+++..
T Consensus 97 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 171 (239)
T 1xxl_A 97 AHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171 (239)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEE
Confidence 999976 7899999999999999999988654332100 00112223346778999999999987643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=164.83 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=118.7
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK 196 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~ 196 (883)
...+..+... ....++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.|+++....+. ..+++..+|+.+++
T Consensus 76 ~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 153 (318)
T 2fk8_A 76 YAKVDLNLDK-LDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA 153 (318)
T ss_dssp HHHHHHHHTT-SCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred HHHHHHHHHh-cCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC
Confidence 3344444332 23356789999999999999988877 54 699999999999999999876543 34688899987653
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----------------cc--CCcc
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------------YD--DEDS 257 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----------------~~--~~~~ 257 (883)
++||+|++..+++|++++++..+++++.++|||||.+++.++........ .. ....
T Consensus 154 -----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
T 2fk8_A 154 -----EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPG 228 (318)
T ss_dssp -----CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT
T ss_pred -----CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCC
Confidence 58999999999999976678999999999999999999998775442110 00 0112
Q ss_pred cccccchhhhhhhhhccccccccc
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
....+.+++.++++++||+++...
T Consensus 229 ~~~~s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 229 GRLPSTEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp CCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred CcCCCHHHHHHHHHhCCCEEEEEE
Confidence 234477899999999999987543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=167.22 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=108.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-----------------------------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK----------------------------- 183 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~----------------------------- 183 (883)
.++.+|||||||+|.++..++..++.+|+|+|+|+.|++.|++++......
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 467899999999998887666777768999999999999999876532100
Q ss_pred Cc-cEEEccCCCCCCCc--CCCCccEEEEcccccccC-h-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc-c
Q psy8372 184 LD-KCYNVGIQDFKPED--LNIKYDVIWIQWVLMFIL-D-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED-S 257 (883)
Q Consensus 184 ~~-~~~~~d~~~~~~~~--~~~~FDlVvs~~vL~hl~-d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~-~ 257 (883)
.+ .++++|+.+..+.. ..++||+|+++.+|||+. + +++..++++++++|||||+|++.+...... +...... .
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-~~~g~~~~~ 212 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YMVGKREFS 212 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEETTEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-ceeCCeEee
Confidence 11 27888888743311 135899999999999963 2 567899999999999999999997543221 1101111 1
Q ss_pred cccccchhhhhhhhhcccccccccC
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
....+.+++.+++.++||+++....
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEee
Confidence 1233677999999999999886654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=163.60 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=118.0
Q ss_pred HHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC
Q psy8372 122 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 122 L~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~ 200 (883)
+..++.......++.+|||||||+|.++..++..+.. +|+|+|+|+.+++.|+++.......++++...|+.+++...
T Consensus 25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~- 103 (276)
T 3mgg_A 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED- 103 (276)
T ss_dssp HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT-
T ss_pred HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC-
Confidence 3333333334467889999999999999988888533 89999999999999999988776667889999998876543
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc---------------cCCcccccccchh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY---------------DDEDSSVVRSLPQ 265 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~---------------~~~~~~~~~s~~~ 265 (883)
++||+|++..+++|+++ +..++++++++|||||++++.++......... .........+..+
T Consensus 104 -~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (276)
T 3mgg_A 104 -SSFDHIFVCFVLEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQ 180 (276)
T ss_dssp -TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGG
T ss_pred -CCeeEEEEechhhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 79999999999999977 77999999999999999999886532211000 0011122235568
Q ss_pred hhhhhhhccccccccc
Q psy8372 266 FCLLFSKANLKCVKSE 281 (883)
Q Consensus 266 ~~~l~~~aGf~vv~~~ 281 (883)
+..+++++||+++..+
T Consensus 181 l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 181 IYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCeEEEe
Confidence 8889999999876443
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=159.59 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.... ...+++++++|+.++.+. ++||+|++..++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~~~~l 142 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---ELFDLIFDYVFF 142 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---SCEEEEEEESST
T ss_pred CCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---CCeeEEEEChhh
Confidence 45999999999999987766544 6999999999999999988753 234568999999886643 489999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+|+++++...++++++++|||||++++.+....... ....+..+..++..+++++||+++..+..
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV-----GGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC-----SCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC-----CCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 999876799999999999999999999886543221 11123357789999999999999876543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=160.73 Aligned_cols=142 Identities=17% Similarity=0.079 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh-----------------ccCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-----------------DCDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~-----------------~~~~~~~~~~~d~~~~ 195 (883)
.++.+|||+|||+|..+..++..|+ +|+|||+|+.|++.|+++... .....++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 3678999999999999999988887 599999999999999877641 1124578999999887
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
++.. .++||+|++..+++|++.++...++++++++|||||++++.+....... . ....+..+.+++.++|.. +|
T Consensus 146 ~~~~-~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~--~--~g~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 146 PRAN-IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK--H--AGPPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGC-CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS--C--CCSSCCCCHHHHHHHHTT-TE
T ss_pred Cccc-CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc--C--CCCCCCCCHHHHHHHhhC-Ce
Confidence 6532 2689999999999999887788999999999999999976554322110 1 111222467788899887 48
Q ss_pred cccccc
Q psy8372 276 KCVKSE 281 (883)
Q Consensus 276 ~vv~~~ 281 (883)
+++...
T Consensus 220 ~v~~~~ 225 (252)
T 2gb4_A 220 SMQCLE 225 (252)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 876554
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-16 Score=157.71 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=110.5
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++..... .+++++++|+.+++... ++||+|++..+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED--NYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT--TCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc--ccccEEEECchHhh
Confidence 9999999999999988887333799999999999999999877643 36789999998866443 68999999999999
Q ss_pred cChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----cccC--C-------cccccccchhhhhhhhhccccccccc
Q psy8372 216 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----EYDD--E-------DSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 216 l~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----~~~~--~-------~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+++ +..++++++++|||||.+++.+........ .+.. . ......+.+++.++++++||+.+...
T Consensus 124 ~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 124 WED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp CSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred ccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 966 889999999999999999998755332110 0000 0 11223366899999999999987654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=162.29 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~- 211 (883)
+++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.. .+.++++|+.+++. +++||+|+|..
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~---~~~fD~v~~~~~ 119 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL---GRRFSAVTCMFS 119 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC---SCCEEEEEECTT
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc---cCCcCEEEEcCc
Confidence 3568999999999999998877765 69999999999999998864 45889999988765 36999999998
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++|+++ +++..++++++++|||||.+++.+.
T Consensus 120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 120 SIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999965 5688999999999999999999754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=150.63 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++ +|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...... .+.+.++|+.+.+... ++||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~--~~fD~v~~~-- 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVA--DAWEGIVSI-- 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCT--TTCSEEEEE--
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCc--CCccEEEEE--
Confidence 355 999999999999988877765 699999999999999998876543 5678889988775433 689999995
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-CCcccccccchhhhhhhhhcccccccccCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-DEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+.|++.+++..++++++++|||||.+++.++.......... ........+..++.++++ ||+++.....
T Consensus 102 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 102 FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 45666567899999999999999999999876554322111 122344567889999999 9998875543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=161.63 Aligned_cols=146 Identities=9% Similarity=0.040 Sum_probs=115.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...+. .+++++.+|+.+++... ++||+|++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~V~~~ 192 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK--GAVTASWNN 192 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--TCEEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC--CCEeEEEEC
Confidence 467889999999999999988887334699999999999999999887644 36789999998876433 699999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-------CCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+++|+ + +..++++++++|||||++++.++.......... ........+..++.++++++||+++....
T Consensus 193 ~~l~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 193 ESTMYV-D--LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp SCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred CchhhC-C--HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 999999 4 789999999999999999998876544221000 00011234678999999999999876543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=154.49 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=114.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-----CCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-----KLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...... ..+.+...|+.+++... ++||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD--SSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT--TCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC--CceeEE
Confidence 4678999999999999998888855 699999999999999998876533 24578899988776433 789999
Q ss_pred EEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccc-----------------c-C-------Ccccccc
Q psy8372 208 WIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-----------------D-D-------EDSSVVR 261 (883)
Q Consensus 208 vs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~-----------------~-~-------~~~~~~~ 261 (883)
++..+++|+++ +....++++++++|||||++++.++........+ . . .......
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 99999999976 3355899999999999999999987543211000 0 0 0112345
Q ss_pred cchhhhhhhhhcccccccccC
Q psy8372 262 SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+.+++.++++++||+++....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 788999999999999987654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=160.00 Aligned_cols=137 Identities=12% Similarity=0.194 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++. ..+.+..+|+.+++. +++||+|++..+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~~~fD~v~~~~~ 126 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---DKPLDAVFSNAM 126 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---SSCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---CCCcCEEEEcch
Confidence 4678999999999999998887544 6999999999999999875 345789999988664 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------------c-cCCcccccccchhhhhhhhhccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------Y-DDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------------~-~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
++|+++ +..++++++++|||||++++..+........ . .........+..++..+++++||++
T Consensus 127 l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 204 (279)
T 3ccf_A 127 LHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV 204 (279)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEE
T ss_pred hhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEE
Confidence 999976 7899999999999999999988654331100 0 0011122346778889999999987
Q ss_pred ccc
Q psy8372 278 VKS 280 (883)
Q Consensus 278 v~~ 280 (883)
+..
T Consensus 205 ~~~ 207 (279)
T 3ccf_A 205 TYA 207 (279)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=147.06 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++........+.+..+|+.+.+. +++||+|++..++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---CCCceEEEEcchh
Confidence 567999999999999998888755 699999999999999998876655567899999988655 3689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+|++.+++..++++++++|||||.+++.+........ .........+.+++.++|++ |+++....
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC--CCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 9998667899999999999999998887654332211 11222334577889999886 87776543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=148.78 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|+++..... ..+.+.++|+.+++... ++||+|++..+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 98 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKD--ESMSFVYSYGT 98 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCT--TCEEEEEECSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCC--CceeEEEEcCh
Confidence 4578999999999997443444333369999999999999999877544 34688999998865433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------c---cCC--cccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------Y---DDE--DSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~---~~~--~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|++.+++..++++++++|||||.+++.++........ + ... ......+.+++..+|..+||...
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 999976779999999999999999999998764432210 0 000 11133466788899999998776
Q ss_pred cc
Q psy8372 279 KS 280 (883)
Q Consensus 279 ~~ 280 (883)
..
T Consensus 179 ~~ 180 (209)
T 2p8j_A 179 ED 180 (209)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=160.99 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++. ++++++.|+.+++... ++||+|++..+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 103 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD--KSVDGVISILA 103 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT--TCBSEEEEESC
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC--CCEeEEEEcch
Confidence 4678999999999999998877554 6999999999999886654 5688999998866443 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc--------CCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD--------DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++|+++ +..++++++++|| ||.+++.++........+. ......+.+...+. +++++||+.+....
T Consensus 104 l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 104 IHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp GGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred HhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 999966 8899999999999 9999888876433221111 01112334556778 99999998775543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-15 Score=154.38 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=104.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++. .++.+..+|+.+++ . +++||+|++..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-~--~~~fD~v~~~~ 103 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWK-P--AQKADLLYANA 103 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCC-C--SSCEEEEEEES
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcC-c--cCCcCEEEEeC
Confidence 467899999999999999888773 236999999999999999872 34688999998876 2 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---------------ccccC--Ccccccccchhhhhhhhhcc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------------NEYDD--EDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---------------~~~~~--~~~~~~~s~~~~~~l~~~aG 274 (883)
+++|+++ +..++++++++|||||.+++.++...... ..... .......+..++.++++++|
T Consensus 104 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 181 (259)
T 2p35_A 104 VFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKS 181 (259)
T ss_dssp CGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGE
T ss_pred chhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcC
Confidence 9999966 88999999999999999999886432210 00000 11223446778899999999
Q ss_pred ccc
Q psy8372 275 LKC 277 (883)
Q Consensus 275 f~v 277 (883)
|++
T Consensus 182 f~v 184 (259)
T 2p35_A 182 SRV 184 (259)
T ss_dssp EEE
T ss_pred Cce
Confidence 864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=160.83 Aligned_cols=157 Identities=12% Similarity=0.188 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC---CCccEEEccC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGI 192 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~---~~~~~~~~d~ 192 (883)
.....++..+. .++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+++++++|+
T Consensus 70 ~~~~~~~~~~~------~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 142 (299)
T 3g2m_A 70 SEAREFATRTG------PVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM 142 (299)
T ss_dssp HHHHHHHHHHC------CCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT
T ss_pred HHHHHHHHhhC------CCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch
Confidence 34445555552 2345999999999999998888765 599999999999999999876432 4568999999
Q ss_pred CCCCCCcCCCCccEEEEc-ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cc----------c-
Q psy8372 193 QDFKPEDLNIKYDVIWIQ-WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY----------D- 253 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~-~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~----------~- 253 (883)
.+++. +++||+|+|. .+++|+++++...++++++++|||||+|++.++....... .+ .
T Consensus 143 ~~~~~---~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 219 (299)
T 3g2m_A 143 SAFAL---DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHV 219 (299)
T ss_dssp TBCCC---SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCE
T ss_pred hcCCc---CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEE
Confidence 98765 3699999864 7788887777899999999999999999998876432100 00 0
Q ss_pred -------------------------CCcccccccchhhhhhhhhcccccccccC
Q psy8372 254 -------------------------DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 254 -------------------------~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
......+.+.+++.++++++||+++....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~ 273 (299)
T 3g2m_A 220 RHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273 (299)
T ss_dssp EEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence 00011134788999999999999987764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=155.28 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-c
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-V 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~-v 212 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+.+.++|+.+++.. ++||+|++.. +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN---RKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS---CCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc---CCceEEEEcCcc
Confidence 678999999999999998877765 599999999999999998876543 568899998876543 5899999998 9
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcc----------------ccc----------------------
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN----------------EYD---------------------- 253 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~----------------~~~---------------------- 253 (883)
++|+++ +++..++++++++|||||.+++..+....... .+.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 999953 56889999999999999999996654211000 000
Q ss_pred ----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 254 ----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 254 ----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
........+.+++.++++++||+++....
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 224 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD 224 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence 00012234788999999999999987654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=157.08 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++. .....++.+..+|+.+++... ++||+|++..+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 113 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPD--ESVHGVIVVHL 113 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCC--CCeeEEEECCc
Confidence 567899999999999999887775 46999999999999999987 333456789999998765433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC-CC----cc----ccc-----CCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GV----KN----EYD-----DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~-~~----~~----~~~-----~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+||+++ +..++++++++|||||.+++...... .. .. ... ........+..++.++++++||+++
T Consensus 114 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 191 (263)
T 2yqz_A 114 WHLVPD--WPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPR 191 (263)
T ss_dssp GGGCTT--HHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCE
T ss_pred hhhcCC--HHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcc
Confidence 999976 78999999999999999998722110 01 00 000 0001223456688888889998854
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-15 Score=153.57 Aligned_cols=145 Identities=13% Similarity=0.175 Sum_probs=111.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++... ..+.+.+.|+.+++.. +++||+|++..+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~--~~~fD~v~~~~~ 116 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLP--QDSFDLAYSSLA 116 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCC--TTCEEEEEEESC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCC--CCCceEEEEecc
Confidence 46789999999999999988888764799999999999999987653 2567889998876543 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCC---Cc--cc----------cc--------------CCcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG---VK--NE----------YD--------------DEDSSVVRSL 263 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~---~~--~~----------~~--------------~~~~~~~~s~ 263 (883)
++|+++ +..++++++++|||||++++.++.... .. .. .. .....++++.
T Consensus 117 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 194 (243)
T 3bkw_A 117 LHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTV 194 (243)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCH
T ss_pred ccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccH
Confidence 999976 889999999999999999998754210 00 00 00 0011223477
Q ss_pred hhhhhhhhhcccccccccCCC
Q psy8372 264 PQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~~~ 284 (883)
.++.++++++||+++......
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~~ 215 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEFC 215 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHcCCEeeeeccCC
Confidence 899999999999998766543
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=155.04 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC--c-c-ceeccCCCCceeeEe--cCHHHHH--HHHHccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA--R-E-FVVPTHEPNKFYSLV--QSPQQLK--QLLMVGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga--~-~-f~v~~~~~~~~~~L~--~Spql~k--q~l~~~~~~-- 417 (883)
..++.+.+|++| ...||.||.||.|+... ..|. . . +.+. +..+..++|+ .+|.+.. .. ....-+
T Consensus 73 ~~~l~~~ir~~~-~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~-npl~e~~~LRp~l~p~l~~~~r~-~~~~~~~P 149 (288)
T 3dsq_A 73 LLELEEKLAKAL-HQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQV-FWLDGKKCLRPMLAPNLYTLWRE-LERLWDKP 149 (288)
T ss_dssp HHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTS-CEEETTEEECSCSHHHHHHHHHH-HTTTSCSC
T ss_pred HHHHHHHHHHHH-HHCCCEEEECCeeecHHHHhhcCCCcccccEEee-cccccchhhhhcChHHHHHHHHH-HHhCCCCC
Confidence 468999999999 68999999999997631 1111 1 1 2111 1112346887 4576542 21 222233
Q ss_pred -cEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 418 -RYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 418 -rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
|+|+||+|||+|..+..|.+||+|+|+++...
T Consensus 150 lrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~ 182 (288)
T 3dsq_A 150 IRIFEIGTCYRKESQGAQHLNEFTMLNLTELGT 182 (288)
T ss_dssp EEEEEEEEEECSCCSSSCCCSEEEEEEEEEETC
T ss_pred EEEEEEeeEEecCCCCCCcCccEEEEEEEEEcC
Confidence 99999999999999999999999999998653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-15 Score=157.43 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++...... ..+.++++|+.+.+... +++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-GKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-SSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC-CCCcCEEEECc
Confidence 46789999999999999888777765899999999999999998876533 34688999998765421 36899999999
Q ss_pred cccc--cChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc--------------cc------c-------------C--
Q psy8372 212 VLMF--ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------------EY------D-------------D-- 254 (883)
Q Consensus 212 vL~h--l~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~--------------~~------~-------------~-- 254 (883)
++|| .+.+++..++++++++|||||.+++.++....... .+ . .
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9988 34466889999999999999999998866321100 00 0 0
Q ss_pred CcccccccchhhhhhhhhcccccccccC
Q psy8372 255 EDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 255 ~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.......+.+++.++++++||+++....
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 0011234668999999999999886643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=149.12 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=105.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC---CCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++ ....+...++.++ +... +++||+|++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~fD~v~~~ 123 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPV-GKDYDLICAN 123 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCC-CCCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccccc-CCCccEEEEC
Confidence 568999999999999998877755 699999999999999987 2346777777665 2222 3469999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc----------ccC------Ccccccccchhhhhhhhhcc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------YDD------EDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~----------~~~------~~~~~~~s~~~~~~l~~~aG 274 (883)
.+++ ..+ +..++++++++|||||++++.++........ +.. .....+.+.+++.++++++|
T Consensus 124 ~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 200 (227)
T 3e8s_A 124 FALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200 (227)
T ss_dssp SCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred chhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence 9999 544 7799999999999999999998764332210 000 11123447889999999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
|+++....
T Consensus 201 f~~~~~~~ 208 (227)
T 3e8s_A 201 LRLVSLQE 208 (227)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99997665
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=159.85 Aligned_cols=148 Identities=9% Similarity=0.120 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC------------------------------C
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD------------------------------K 183 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~------------------------------~ 183 (883)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|++++..... .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 5789999999999965433333345799999999999999986542100 0
Q ss_pred CccEEEccCCC-CCCC---cCCCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCC-c
Q psy8372 184 LDKCYNVGIQD-FKPE---DLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE-D 256 (883)
Q Consensus 184 ~~~~~~~d~~~-~~~~---~~~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~-~ 256 (883)
.+.++.+|+.+ .+.. ..+++||+|+|+.+++|+.. +++..++++++++|||||+|++........ ...... .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-~~~~~~~~ 229 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-YLAGEARL 229 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-EEETTEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce-EEcCCeee
Confidence 12456668876 3221 11357999999999999543 368999999999999999999986432211 111111 1
Q ss_pred ccccccchhhhhhhhhcccccccccC
Q psy8372 257 SSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 257 ~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.....+.+++.++|+++||+++....
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 12344788999999999999886553
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=146.68 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..+ +..+|+|+|+|+.|++.|+++. ..+.++++|+.+++... ++||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPG--ESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCS--SCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCC--CcEEEEEEcChh
Confidence 6789999999999999765 5547999999999999999886 34578888888765433 689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
+|+++ +..++++++++|||||.+++.++....
T Consensus 106 ~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 106 EFVED--VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp TTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred hhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 99976 789999999999999999999876543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-15 Score=158.12 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..++.+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++...... ++++.+.|+.+++.. ++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~v~~ 95 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN---DKYDIAIC 95 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS---SCEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC---CCeeEEEE
Confidence 45678999999999999998877633 3799999999999999999875433 568999999986652 58999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--cccc---------------------CCcccccccchhh
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYD---------------------DEDSSVVRSLPQF 266 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~---------------------~~~~~~~~s~~~~ 266 (883)
..+++|+++ +..++++++++|||||++++.++.+.... ...+ ...+.......++
T Consensus 96 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (284)
T 3gu3_A 96 HAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKI 173 (284)
T ss_dssp ESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTH
T ss_pred CChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHH
Confidence 999999976 78999999999999999999987621000 0000 0111122345578
Q ss_pred hhhhhhcccccccccC
Q psy8372 267 CLLFSKANLKCVKSEK 282 (883)
Q Consensus 267 ~~l~~~aGf~vv~~~~ 282 (883)
.++++++||+.+....
T Consensus 174 ~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 174 PIYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8888888888776543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=152.43 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+.++++|+.+++.. ++||+|+|. .
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~v~~~~~ 114 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---NEFDAVTMFFS 114 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---SCEEEEEECSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC---CCccEEEEcCC
Confidence 4567999999999999998888765 599999999999999998876543 468899999886543 589999986 4
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+++|++.+++..++++++++|||||.+++..++
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 566776667899999999999999999986543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=162.58 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC------CccEEEccCCC------CCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK------LDKCYNVGIQD------FKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~------~~~~~~~d~~~------~~~~~~ 200 (883)
+++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....... .+++.+.++.. +.....
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 357899999999998666666666668999999999999999987654322 13466776621 111111
Q ss_pred CCCccEEEEccccccc-ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 201 NIKYDVIWIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl-~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+++||+|+|..++||+ ..++...++++++++|||||++++.++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3689999999999986 3345689999999999999999998875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=158.89 Aligned_cols=150 Identities=14% Similarity=0.206 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCC-CCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK-PEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~~~FDlVvs~ 210 (883)
+..+|||||||+|.++..++...+. +++++|+ +.+++.|++++..... .+++++.+|+.+.. +. +++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF--PTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC--CCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC--CCCcCEEEEe
Confidence 5679999999999999988887655 7999999 9999999998876543 46789999988753 21 2589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------------ccCCcccccccchhhhhhhhhcccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------YDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
.++||+++++...++++++++|||||++++.+......... .........++..+|.++++++||+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 99999998888899999999999999999998765432110 0112223455888999999999999
Q ss_pred cccccCCCCC
Q psy8372 277 CVKSEKGEFS 286 (883)
Q Consensus 277 vv~~~~~~~~ 286 (883)
++........
T Consensus 336 ~v~~~~~~g~ 345 (363)
T 3dp7_A 336 VEEIQDNIGL 345 (363)
T ss_dssp ESCCCCCBTT
T ss_pred EEEEEeCCCC
Confidence 9987654433
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=151.83 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE-cc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI-QW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs-~~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.. .+.++..|+.+++. +++||+|+| ..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~---~~~~D~v~~~~~ 109 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----DATLHQGDMRDFRL---GRKFSAVVSMFS 109 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----TCEEEECCTTTCCC---SSCEEEEEECTT
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----CCEEEECCHHHccc---CCCCcEEEEcCc
Confidence 4578999999999999998888766 69999999999999998753 35789999987654 368999996 45
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+++|+++ +++..++++++++|||||.+++.++..
T Consensus 110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp GGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 9999964 568899999999999999999987543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=143.17 Aligned_cols=134 Identities=20% Similarity=0.153 Sum_probs=106.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++ ..++++...| . +.. +++||+|++..+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~--~~~--~~~~D~v~~~~~ 84 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP-K--EIP--DNSVDFILFANS 84 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG-G--GSC--TTCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-C--CCC--CCceEEEEEccc
Confidence 4677999999999999998877765 799999999999999988 2355778777 2 222 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
++|+++ +..++++++++|||||++++.++....... ........+..++.++++ ||+++......
T Consensus 85 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~ 149 (170)
T 3i9f_A 85 FHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGI---GPPLSIRMDEKDYMGWFS--NFVVEKRFNPT 149 (170)
T ss_dssp STTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSS---SSCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred hhcccC--HHHHHHHHHHhcCCCCEEEEEEcCcccccc---CchHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence 999976 789999999999999999999876543211 112233357789999998 99998765543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=164.41 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=110.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhc--------cCCCccEEEccCCCC------C
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKD--------CDKLDKCYNVGIQDF------K 196 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~--------~~~~~~~~~~d~~~~------~ 196 (883)
.++.+|||||||+|.++..++... . .+|+|+|+|+.|++.|++++... ...+++++++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999998887763 2 27999999999999999987543 124678999999876 3
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc-------cCCcccccccchhhhhh
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-------DDEDSSVVRSLPQFCLL 269 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~l 269 (883)
.. +++||+|+++.+++|+++ +..++++++++|||||+|++.+.......... .........+..+|.++
T Consensus 162 ~~--~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 162 VP--DSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CC--TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CC--CCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 32 368999999999999976 88999999999999999999886544321100 00111122356899999
Q ss_pred hhhcccccccc
Q psy8372 270 FSKANLKCVKS 280 (883)
Q Consensus 270 ~~~aGf~vv~~ 280 (883)
++++||+.+..
T Consensus 238 l~~aGF~~v~~ 248 (383)
T 4fsd_A 238 VAEAGFRDVRL 248 (383)
T ss_dssp HHHTTCCCEEE
T ss_pred HHHCCCceEEE
Confidence 99999987744
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=156.36 Aligned_cols=145 Identities=19% Similarity=0.228 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCChHHHHH----HHhCCC-e--EEEEeCCHHHHHHHHHHHhhc-cCCCccE--EEccCCCCCC----C
Q psy8372 133 PGKTRVLDVGAGIGRISKYL----LAKHFD-K--IDLLEQSSKFIEQAKEEILKD-CDKLDKC--YNVGIQDFKP----E 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l----~~~g~~-~--V~gvD~S~~~le~A~~~~~~~-~~~~~~~--~~~d~~~~~~----~ 198 (883)
.++.+|||||||+|.++..+ +..+.. . ++|+|+|+.|++.|++++... ...++.+ ..+++.++.. .
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999866433 333332 2 399999999999999987643 2233333 3444443320 0
Q ss_pred cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc--------cccCCcccccccchhhhhhh
Q psy8372 199 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 199 ~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~l~ 270 (883)
..+++||+|++..++||+++ +..++++++++|||||++++.......... .+.......+.+..++.+++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML 208 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHH
Confidence 11368999999999999977 889999999999999999998755322110 01111123345678999999
Q ss_pred hhccccccc
Q psy8372 271 SKANLKCVK 279 (883)
Q Consensus 271 ~~aGf~vv~ 279 (883)
+++||+++.
T Consensus 209 ~~aGf~~~~ 217 (292)
T 2aot_A 209 DNLGLKYEC 217 (292)
T ss_dssp HHHTCCEEE
T ss_pred HHCCCceEE
Confidence 999998764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-14 Score=144.42 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++..... ..++++++|+.+++.. +++||+|+++.++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFE--DKTFDYVIFIDSI 113 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSC--TTCEEEEEEESCG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCC--CCcEEEEEEcCch
Confidence 477999999999999988877766 79999999999999999887554 4568999998876533 2689999999996
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++...+++..++++++++|||||.+++.++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5555466889999999999999999998765
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=150.83 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc---CCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED---LNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.. ..+++++++|+.++.... ....||+|++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEEE
Confidence 5678999999999999998888877 59999999999999999873 235688999988754321 0124899999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----------------cccCCcccccccchhhhhhhhh
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------------EYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
..++||+++++...++++++++|||||++++.++....... .+.........+.+++.++|
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--
Confidence 99999998767899999999999999999998875432110 00000011123566788888
Q ss_pred cccccccccC
Q psy8372 273 ANLKCVKSEK 282 (883)
Q Consensus 273 aGf~vv~~~~ 282 (883)
+||+++....
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 8888876544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-15 Score=156.38 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-----------------------------C
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-----------------------------K 183 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-----------------------------~ 183 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++...... .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 45679999999999999877776664799999999999999988764321 0
Q ss_pred Cc-cEEEccCCCCCCCc--CCCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc-c
Q psy8372 184 LD-KCYNVGIQDFKPED--LNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED-S 257 (883)
Q Consensus 184 ~~-~~~~~d~~~~~~~~--~~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~-~ 257 (883)
.+ .+..+|+.+..+.. ..++||+|++..+++|++. +++..++++++++|||||++++.+...... ....... .
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-YMIGEQKFS 213 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEETTEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-EEcCCcccc
Confidence 14 78889988765422 1268999999999995533 368899999999999999999988543321 1000110 1
Q ss_pred cccccchhhhhhhhhcccccccccC
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
....+.+++.++++++||+++....
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEE
Confidence 2233566999999999999887654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-15 Score=156.81 Aligned_cols=144 Identities=12% Similarity=0.042 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE---
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI--- 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs--- 209 (883)
.++.||||||||+|..+..+++..+.+|+|||+|+.|++.|+++..... ..+.++.+++.+......+++||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcccccccCCceEEEeee
Confidence 4688999999999999987777666689999999999999999887653 334677787765543333468999975
Q ss_pred --cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 210 --QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 210 --~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..+++|+++ +..++++++|+|||||+|++.+....... .....+.........+...|.++||++...
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGEL-MKSKYSDITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHH-TTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred ecccchhhhcc--hhhhhhhhhheeCCCCEEEEEecCCchhh-hhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence 455667744 88999999999999999987543211100 000011111112345667788899987644
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=148.45 Aligned_cols=135 Identities=20% Similarity=0.177 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.+|||+|||+|.++..++.. +|+|+|+.+++.|+++ .+.++..|+.+++... ++||+|++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD--ESFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT--TCEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCC--CCeeEEEEcchHh
Confidence 779999999999999865433 8999999999999886 3478888888765433 6899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------ccCCcccccccchhhhhhhhhcccccccccCCCC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEF 285 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~ 285 (883)
|+++ +..++++++++|+|||.+++.++........ ..........+..++.++++++||+++.......
T Consensus 114 ~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 190 (219)
T 1vlm_A 114 FVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLF 190 (219)
T ss_dssp GSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred hccC--HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccC
Confidence 9976 7899999999999999999998764332110 0001122334788999999999999987655443
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=147.67 Aligned_cols=105 Identities=16% Similarity=0.308 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~- 211 (883)
+++.+|||+|||+|.++..++.. .+|+|+|+|+.|++.|+++..... ..+++++.|+.+++.. ++||+|++..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~---~~fD~v~~~~~ 105 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP---EPVDAITILCD 105 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS---SCEEEEEECTT
T ss_pred CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC---CCcCEEEEeCC
Confidence 35689999999999999877666 579999999999999999887544 3468899998876543 5899999986
Q ss_pred cccccC-hHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFIL-DEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~-ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++|+. .+++..++++++++|||||.+++..+
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 106 SLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 999994 45688999999999999999998654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=155.98 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=112.4
Q ss_pred CCCCeEEEEcCCCChHHHHHH-HhC-CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLL-AKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~-~~g-~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||||||+|.++..++ ... ..+|+|+|+|+.+++.|+++....+. .+++++++|+.+++.. ++||+|++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~ 193 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR---EGYDLLTS 193 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC---SCEEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc---CCeEEEEE
Confidence 567899999999999998764 222 23799999999999999999876543 3378999999887543 58999999
Q ss_pred cccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-----C------------------Ccccccccchh
Q psy8372 210 QWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-----D------------------EDSSVVRSLPQ 265 (883)
Q Consensus 210 ~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-----~------------------~~~~~~~s~~~ 265 (883)
+.+++|+++ +....++++++++|||||++++.+........... . .......+..+
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 999999976 33446899999999999999998865432211100 0 00112357889
Q ss_pred hhhhhhhcccccccccC
Q psy8372 266 FCLLFSKANLKCVKSEK 282 (883)
Q Consensus 266 ~~~l~~~aGf~vv~~~~ 282 (883)
+.++++++||+++....
T Consensus 274 ~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEc
Confidence 99999999999987664
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=138.90 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~ 211 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.. .+.++..|+.+.+.. +++||+|++. .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~~--~~~~D~i~~~~~ 116 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQIS--ETDFDLIVSAGN 116 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCCC--CCCEEEEEECCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCCC--CCceeEEEECCc
Confidence 4678999999999999998887754 69999999999999998764 357889998876543 3689999998 7
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+++|++.++...++++++++|+|||.+++....... .+..++.++++++||+++.....
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~-------------~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAGRG-------------WVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSS-------------CCHHHHHHHHHHHTEEEEEEESS
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC-------------cCHHHHHHHHHHcCCEEeeeecc
Confidence 899997777889999999999999999998753221 35779999999999998876443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=150.14 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=110.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. .++++++|+.+... +++||+|+++.++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---QENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---CSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---cCCccEEEEccch
Confidence 577999999999999998888866 699999999999999999887655 66899999988765 3689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+|+++++...++++++++|||||.+++.......... .........+..++.+++.. |+++...
T Consensus 195 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 195 MFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP--CPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC--CCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 9998877889999999999999998887654432211 11222344567788888865 6666543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=145.58 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++.. ++...|+.+......+++||+|++..+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCCCCCCCccCEEEECCh
Confidence 467899999999999999887774 579999999999999987643 578888876433222468999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-------cccc-------CCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-------NEYD-------DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-------~~~~-------~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|+++ +..++++++++|+|||.+++.++...... ..+. ...+....+..++.++++++||+++
T Consensus 103 l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 180 (230)
T 3cc8_A 103 LEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS 180 (230)
T ss_dssp GGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence 999976 77999999999999999999886643210 0000 1112233578899999999999987
Q ss_pred cccCC
Q psy8372 279 KSEKG 283 (883)
Q Consensus 279 ~~~~~ 283 (883)
.....
T Consensus 181 ~~~~~ 185 (230)
T 3cc8_A 181 KVDRV 185 (230)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 65543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=152.28 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+.+.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++ ..++.+.++++.+++... ++||+|+|..+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~--~sfD~v~~~~~ 108 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPP--ASVDVAIAAQA 108 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCS--SCEEEEEECSC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccC--CcccEEEEeee
Confidence 346799999999999998777665 469999999999988764 235689999999887654 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||++ +..++++++|+|||||.|++..+.
T Consensus 109 ~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 109 MHWFD---LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CTTCC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhHhh---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 98884 457999999999999999998754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=153.27 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..... +++++|+| .+++.|+++....+. .++++...|+.+.+.. +.||+|++.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG---NDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC---SCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC---CCCcEEEEc
Confidence 45679999999999999988887533 79999999 999999998876543 3578999998875433 359999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------cc-----CCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YD-----DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~~-----~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++||+++++...++++++++|+|||++++.+......... ++ .......++.++|.++++++||+.+.
T Consensus 240 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 240 NFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred chhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 99999988778899999999999999999998765432110 00 01133455788999999999999887
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
...
T Consensus 320 ~~~ 322 (335)
T 2r3s_A 320 LHS 322 (335)
T ss_dssp EEC
T ss_pred EEE
Confidence 644
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=153.79 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccC------------------------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD------------------------------ 182 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~------------------------------ 182 (883)
++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|++++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 57899999999999999888873 34899999999999999987654321
Q ss_pred ----------------------------CCccEEEccCCCCCC---CcCCCCccEEEEccccccc----ChHHHHHHHHH
Q psy8372 183 ----------------------------KLDKCYNVGIQDFKP---EDLNIKYDVIWIQWVLMFI----LDEDIIKFLNL 227 (883)
Q Consensus 183 ----------------------------~~~~~~~~d~~~~~~---~~~~~~FDlVvs~~vL~hl----~ded~~~~l~~ 227 (883)
.+++|.++|+..... ....++||+|+|..+++|+ .++++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 367889998875430 0113689999999999888 44578999999
Q ss_pred HHHHhccCcEEEEEecccCCCccc--cc----CCcccccccchhhhhhhhh--cccccccc
Q psy8372 228 CKQILNKNGIIIIKDNVASGVKNE--YD----DEDSSVVRSLPQFCLLFSK--ANLKCVKS 280 (883)
Q Consensus 228 ~~r~LKPGG~lvi~~~~~~~~~~~--~~----~~~~~~~~s~~~~~~l~~~--aGf~vv~~ 280 (883)
++++|||||+|++....+...... .. ..-......+.++..+|.+ +||+.+..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEE
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEE
Confidence 999999999999986543321100 00 0001122246788999998 99976644
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=146.28 Aligned_cols=148 Identities=10% Similarity=0.060 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHH------HHHHHHHHHhhccC-CCccEEEcc-CCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSK------FIEQAKEEILKDCD-KLDKCYNVG-IQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~------~le~A~~~~~~~~~-~~~~~~~~d-~~~~~~~~~~~ 202 (883)
.++.+|||||||+|.++..++..+ . .+|+|+|+|+. |++.|+++...... .++++...| .........++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 567899999999999999888873 4 47999999997 99999999876543 456788887 32221111236
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-------------c----c--CCcccccccc
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------------Y----D--DEDSSVVRSL 263 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-------------~----~--~~~~~~~~s~ 263 (883)
+||+|++..+++|+++ +..+++.+.++++|||++++.+......... + . ........+.
T Consensus 122 ~fD~v~~~~~l~~~~~--~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 199 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFAS--ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITP 199 (275)
T ss_dssp CCSEEEEESCGGGSSC--HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCH
T ss_pred CEEEEEEccchhhCCC--HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCH
Confidence 8999999999999987 5567777777778899999988765322100 0 0 1111234577
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
.++.++++++||+++....
T Consensus 200 ~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 200 DTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp HHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHCCCeeEEEEE
Confidence 8999999999999875543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=143.63 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.... .+++++++|+.++.+ +++||+|++..+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---AELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---SCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---CCCccEEEEccH
Confidence 4667999999999999998877764 6999999999999999988753 367899999988763 369999999999
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+++ +....++++++++|||||.+++.++.
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999986 45578899999999999999998854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=141.30 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++... ...+.+..+|+.+++... ++||+|++..+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~--~~fD~v~~~~~ 116 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPS--ASFDVVLEKGT 116 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCS--SCEEEEEEESH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCC--CcccEEEECcc
Confidence 46789999999999999988888775799999999999999998764 345688999988864333 68999999999
Q ss_pred ccccC-------------hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFIL-------------DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~-------------ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+. .++...+++++.++|||||.+++.++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 98875 345789999999999999999999853
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=151.91 Aligned_cols=145 Identities=20% Similarity=0.178 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+..+|||||||+|.++..++...+. +++++|+ +.+++.|+++..... ..++++...|+.+. . . .+||+|++.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-p--~~~D~v~~~ 242 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-L-P--AGAGGYVLS 242 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C--CSCSEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-C-C--CCCcEEEEe
Confidence 44679999999999999988887655 7999999 999999999887654 35678999998632 1 1 279999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--cccc----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYD----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++||+++++...++++++++|||||++++.+....... ..++ .......++.++|.++++++||+++....
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999999987789999999999999999999987654320 0000 11223346788999999999999987653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=150.95 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlVvs 209 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++... ++..++.+... ...+++||+|++
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~ 116 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLN 116 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEE
Confidence 5678999999999999998888765 5999999999999999987643 23344444332 122468999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+.++||+..++...++++++++| |||.++++..
T Consensus 117 ~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 117 DRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 99999998878889999999999 9999999874
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-14 Score=151.41 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc----CCCccEEEccCCCCC---CCcCCCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFK---PEDLNIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~~d~~~~~---~~~~~~~FDl 206 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++..... ...+.+..+|+.+++ .. +++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA--GDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC--TTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc--CCCeEE
Confidence 567999999999999998888876 69999999999999998764321 124467788877654 32 268999
Q ss_pred EEEc-ccccccCh-----HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 207 IWIQ-WVLMFILD-----EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 207 Vvs~-~vL~hl~d-----ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+|. .+++|+++ +++..++++++++|||||++++..+.
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998 89999987 67889999999999999999998854
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=151.96 Aligned_cols=144 Identities=12% Similarity=0.156 Sum_probs=114.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+.+|||||||+|.++..++...+. +++++|+ +.+++.|+++...... .+++++..|+.+.... .++.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-EGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-TTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-CCCCccEEEEecc
Confidence 789999999999999988887655 8999999 8899999998776543 3578999998875411 1247999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------cc-----CCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YD-----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~~-----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+||+++++...++++++++|||||++++.+......... ++ .......++..+|.++++++||+++..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 999998778999999999999999999998764432110 00 112334567889999999999999874
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-14 Score=148.16 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC--CCCcCCCCccEEEE-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF--KPEDLNIKYDVIWI- 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~FDlVvs- 209 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++..... .++.++++|+.++ +.. +++||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~--~~~fD~V~~d 135 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLP--DGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSC--TTCEEEEEEC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccC--CCceEEEEEC
Confidence 4678999999999999987765555589999999999999999887544 4568889998876 333 368999999
Q ss_pred cccc--cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccC-Ccccccccchhhhhhhhhccccc
Q psy8372 210 QWVL--MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD-EDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 210 ~~vL--~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~-~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
.+.+ +.....+...++++++++|||||+|++.+...... .... .........+.+...+.++||..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE--LMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH--HTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHH--hhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 5543 22222446688999999999999999876542110 0000 00011111245567788899985
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-14 Score=161.82 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.... ....+...+...++.. +++||+|++..+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~--~~~fD~I~~~~v 180 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRV--RTDFFEKATADDVRRT--EGPANVIYAANT 180 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCE--ECSCCSHHHHHHHHHH--HCCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCc--ceeeechhhHhhcccC--CCCEEEEEECCh
Confidence 4678999999999999998888766 6999999999999998762211 0101112222222221 268999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--ccccC--CcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYDD--EDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~~--~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++|+++ +..++++++++|||||++++.++...... ..+.. ..+..+.+..++..+++++||+++....
T Consensus 181 l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 181 LCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp GGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 999976 88999999999999999999876522110 00111 2233445788999999999999987654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=145.57 Aligned_cols=141 Identities=13% Similarity=0.230 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCC---ChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----------Cc
Q psy8372 134 GKTRVLDVGAGI---GRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----------ED 199 (883)
Q Consensus 134 ~~~rVLDVGCGt---G~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----------~~ 199 (883)
+..+|||||||+ |.++..+...... +|+++|+|+.|++.|++++.. ..+++++++|+.+... .+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCC
Confidence 457999999999 9887655554333 799999999999999998753 3457899999875320 11
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------ccccC-Ccccccccchhhhhhhhh
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------NEYDD-EDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~~~~~-~~~~~~~s~~~~~~l~~~ 272 (883)
.++||+|++..++||++++++..++++++++|||||+|++.+....... ..+.. ......++.+++..+|
T Consensus 155 -~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l-- 231 (274)
T 2qe6_A 155 -FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF-- 231 (274)
T ss_dssp -TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--
T ss_pred -CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--
Confidence 1479999999999999887789999999999999999999987653200 00110 1123446778888888
Q ss_pred ccccccc
Q psy8372 273 ANLKCVK 279 (883)
Q Consensus 273 aGf~vv~ 279 (883)
+||+++.
T Consensus 232 ~G~~l~~ 238 (274)
T 2qe6_A 232 GDFELVE 238 (274)
T ss_dssp TTCEECT
T ss_pred CCCeEcc
Confidence 4887765
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=149.18 Aligned_cols=113 Identities=15% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-------cCCCccEEEccCCCCC----CCcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-------CDKLDKCYNVGIQDFK----PEDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-------~~~~~~~~~~d~~~~~----~~~~~ 201 (883)
+++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++.... ....+.++++|+.+.+ ....+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 356799999999999998888765558999999999999999987653 2234688999998865 22223
Q ss_pred CCccEEEEccccccc-C-hHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 202 IKYDVIWIQWVLMFI-L-DEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl-~-ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++||+|+|..++||+ . .+++..++++++++|||||.+++.++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 589999999999998 3 3567899999999999999999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-13 Score=148.46 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=115.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+..+|||||||+|.++..++...+. +++++|+ +.+++.|+++..... ..++++...|+.+. .. ..||+|++.
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~p--~~~D~v~~~ 275 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET--IP--DGADVYLIK 275 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC--CC--SSCSEEEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC--CC--CCceEEEhh
Confidence 45689999999999999988887654 7999999 999999999887654 35678999998732 11 379999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc----c----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY----D----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~----~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++||+++++...++++++++|||||++++.+.......... + .......++.++|.++++++||+++....
T Consensus 276 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 276 HVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 999999987777999999999999999999987654421110 0 11123346788999999999999987754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=138.16 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++........+++...|+.+.. +++||+|+++.+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~fD~i~~~~~ 134 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----DGKFDLIVANIL 134 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----CSCEEEEEEESC
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----CCCceEEEECCc
Confidence 4678999999999999998777666589999999999999999988765554789999987643 258999999988
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++++ ..+++++.++|||||++++.+... .+...+..+++++||+++....
T Consensus 135 ~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 135 AEIL-----LDLIPQLDSHLNEDGQVIFSGIDY---------------LQLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp HHHH-----HHHGGGSGGGEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHH-----HHHHHHHHHhcCCCCEEEEEecCc---------------ccHHHHHHHHHHcCCceEEeec
Confidence 7664 578999999999999999986432 1466889999999999886544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=134.77 Aligned_cols=110 Identities=10% Similarity=0.036 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~- 211 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+..++++++.+..++.... +++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v~~~~~ 98 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAAIFNLG 98 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEEEEeCC
Confidence 46789999999999999988777 4479999999999999999988766566788887776643222 36899999873
Q ss_pred ccccc------ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFI------LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl------~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++. ..++...+++++.++|||||.+++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 32220 1145678899999999999999998754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-13 Score=146.81 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..... +++++|+ +.+++.|+++...... .+++++..|+.+.+.. .+|+|++.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~D~v~~~ 263 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP----EADAVLFC 263 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC----CCSEEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC----CCCEEEEe
Confidence 56789999999999999988887644 7999999 9999999998876543 3478999998876432 34999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-c----------c-CCcccccccchhhhhhhhhcccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-Y----------D-DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-~----------~-~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
.++||+++++...++++++++|||||++++.+......... + . ......+++.++|.++++++||+++
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v 343 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred chhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence 99999998888999999999999999999988654322100 0 0 0011122688899999999999987
Q ss_pred cccC
Q psy8372 279 KSEK 282 (883)
Q Consensus 279 ~~~~ 282 (883)
....
T Consensus 344 ~~~~ 347 (359)
T 1x19_A 344 TMVR 347 (359)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=133.80 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++...+..+++++..|+.+..... ++||+|++..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~i~~~~ 116 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL--PDPDRVFIGG 116 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS--CCCSEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC--CCCCEEEECC
Confidence 5678999999999999998888864 389999999999999999988766667789999987654433 5799999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+++ ++..+++++.++|||||++++..... .+...+...++++||.
T Consensus 117 ~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 117 SGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL---------------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp CTT-----CHHHHHHHHHHHCCTTCEEEEEECBH---------------HHHHHHHHHHHHTTCE
T ss_pred CCc-----CHHHHHHHHHHhcCCCeEEEEEeccc---------------ccHHHHHHHHHHCCCc
Confidence 775 26689999999999999999987422 2456788889999983
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=150.14 Aligned_cols=145 Identities=21% Similarity=0.220 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..... +++++|+ +.+++.|+++....+. .+++++..|+.+. .. ..||+|++.
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~---~~~D~v~~~ 255 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LP---VTADVVLLS 255 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS---CCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc-CC---CCCCEEEEe
Confidence 46789999999999999988887644 7999999 9999999998876543 3678999998752 21 259999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec--ccCCCcc-----ccc----CCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN--VASGVKN-----EYD----DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~--~~~~~~~-----~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.++||+++++...++++++++|||||++++.+. ....... .++ ...+...++..+|.++++++||+++.
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 999999887677999999999999999999887 4221100 000 00112345788999999999999887
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
...
T Consensus 336 ~~~ 338 (374)
T 1qzz_A 336 ERT 338 (374)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-13 Score=144.49 Aligned_cols=108 Identities=23% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCc----CCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPED----LNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~----~~~~F 204 (883)
.++.+|||||||+|.++..++.. ...+|+|+|+|+.|++.|+++.... ...+++++++|+.+++... ..++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 46789999999999999988863 3458999999999999999988764 3456789999998765321 01689
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+|++..++||+ + +..++++++++|||||.+++.+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999 5 88999999999999999999543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=136.17 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++......+++++++|+.++.....+++||+|+++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 35779999999999999988887777899999999999999999887665677899999887642111368999999988
Q ss_pred ccccChHHHHHHHHHHHH--HhccCcEEEEEeccc
Q psy8372 213 LMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNVA 245 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~~ 245 (883)
+++. .++...++..+.+ +|||||.+++.....
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7765 2457899999999 999999999987544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=145.99 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=114.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++..+|||||||+|.++..++++.+. +++..|. |.+++.|+++.......+++++.+|+.+.++ ..+|+|++..
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~----~~~D~~~~~~ 252 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL----PEADLYILAR 252 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC----CCCSEEEEES
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC----CCceEEEeee
Confidence 45679999999999999999988776 7788886 8899999998776566778999999865322 3589999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------ccc----CCcccccccchhhhhhhhhccccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYD----DEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+||++++++...+|++++++|+|||+++|.+....+... .++ ...++..++..+|.++++++||+.++..
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 999999988899999999999999999999876432211 000 1123445688999999999999998765
Q ss_pred C
Q psy8372 282 K 282 (883)
Q Consensus 282 ~ 282 (883)
.
T Consensus 333 ~ 333 (353)
T 4a6d_A 333 K 333 (353)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=144.99 Aligned_cols=142 Identities=12% Similarity=0.214 Sum_probs=111.8
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+|||||||+|..+..++...+. +++++|+ +.+++.|+++....+ ..+++++..|+.+ +. +++||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV---PSNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC---CSSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC---CCCCCEEEEchhc
Confidence 79999999999999988887544 7999999 999999999876543 3457899999876 22 2479999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----cc----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----YD----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
||+++++...++++++++|||||++++.+......... ++ .......++..+|.++++++||+++....
T Consensus 244 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 244 GDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 99988777899999999999999999998764332110 00 00123345788999999999999886543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=146.45 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=113.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..+.. +++++|+ +.+++.|+++....+. .+++++..|+.+.. . ..||+|++.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---~~~D~v~~~ 256 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-P---RKADAIILS 256 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S---SCEEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC-C---CCccEEEEc
Confidence 46789999999999999988888654 7999999 9999999998876543 36789999987522 1 359999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcc-c----cc----CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKN-E----YD----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~-~----~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.++||+++++...++++++++|||||++++.+.. ...... . ++ ...+...++.++|.++++++||+++..
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 336 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 9999998877789999999999999999999876 221110 0 00 011234457889999999999998865
Q ss_pred cC
Q psy8372 281 EK 282 (883)
Q Consensus 281 ~~ 282 (883)
..
T Consensus 337 ~~ 338 (360)
T 1tw3_A 337 RQ 338 (360)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=138.49 Aligned_cols=139 Identities=19% Similarity=0.318 Sum_probs=102.1
Q ss_pred chhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
.....++..+++|+....... + .........++..+. +++.+|||||||+|.++..++..+. +|
T Consensus 16 ~~~~~~~~~a~~Yd~~~~~~~-~--------~~~~~~~~~~l~~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v 79 (260)
T 2avn_A 16 RSWEFYDRIARAYDSMYETPK-W--------KLYHRLIGSFLEEYL------KNPCRVLDLGGGTGKWSLFLQERGF-EV 79 (260)
T ss_dssp CHHHHHHHHHHHHGGGGCSHH-H--------HHHHHHHHHHHHHHC------CSCCEEEEETCTTCHHHHHHHTTTC-EE
T ss_pred hhcchhhHHHHHHHHhccccc-h--------hHHHHHHHHHHHHhc------CCCCeEEEeCCCcCHHHHHHHHcCC-eE
Confidence 446778888888876542110 0 011122333343332 2677999999999999998877755 69
Q ss_pred EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
+|+|+|+.|++.|+++... .+.+.|+.+++... ++||+|++..+++|+.++ +..++++++++|||||.+++
T Consensus 80 ~gvD~s~~~l~~a~~~~~~------~~~~~d~~~~~~~~--~~fD~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 150 (260)
T 2avn_A 80 VLVDPSKEMLEVAREKGVK------NVVEAKAEDLPFPS--GAFEAVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIA 150 (260)
T ss_dssp EEEESCHHHHHHHHHHTCS------CEEECCTTSCCSCT--TCEEEEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHhhcCC------CEEECcHHHCCCCC--CCEEEEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEE
Confidence 9999999999999988651 27888888766433 689999998877776322 88999999999999999999
Q ss_pred Eecc
Q psy8372 241 KDNV 244 (883)
Q Consensus 241 ~~~~ 244 (883)
..+.
T Consensus 151 ~~~~ 154 (260)
T 2avn_A 151 TVDN 154 (260)
T ss_dssp EEEB
T ss_pred EeCC
Confidence 8864
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=152.84 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhc------cCCCccEEEccCCCCCCCcCCCCcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYD 205 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~FD 205 (883)
++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++... ...+++++++|+.+++... ++||
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d--~sFD 798 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRL--HDVD 798 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTS--CSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCccc--CCee
Confidence 678999999999999998877763 47999999999999999866532 3346789999999877654 7899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC-------------------cccccCCcccccccchhh
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-------------------KNEYDDEDSSVVRSLPQF 266 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~-------------------~~~~~~~~~~~~~s~~~~ 266 (883)
+|++..+++|++++....++++++++|||| .+++.++..... ...+...++.+..+..++
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEF 877 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQF 877 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHH
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHH
Confidence 999999999999876778999999999999 888887654210 011222223333344555
Q ss_pred hh----hhhhcccccccccCCCC
Q psy8372 267 CL----LFSKANLKCVKSEKGEF 285 (883)
Q Consensus 267 ~~----l~~~aGf~vv~~~~~~~ 285 (883)
.. +..+.||.+.....+..
T Consensus 878 r~Wae~LAer~GYsVefvGVGDg 900 (950)
T 3htx_A 878 NQWASKLGKRHNYSVEFSGVGGS 900 (950)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSC
T ss_pred HHHHHHHHHhcCcEEEEEccCCC
Confidence 55 66777888766655543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=136.15 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++. .+++++++|+.+..+...+++||+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~~fD~v~~~~- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----PHADVYEWNGKGELPAGLGAPFGLIVSRR- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCSCSSCCTTCCCCEEEEEEES-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----CCceEEEcchhhccCCcCCCCEEEEEeCC-
Confidence 4678999999999999998887754 6999999999999999882 34689999995433222136899999972
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+ +..++++++++|||||.++... ...+...+...+.++||..+..
T Consensus 120 -----~--~~~~l~~~~~~LkpgG~l~~~~----------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 -----G--PTSVILRLPELAAPDAHFLYVG----------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp -----C--CSGGGGGHHHHEEEEEEEEEEE----------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred -----C--HHHHHHHHHHHcCCCcEEEEeC----------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 2 4578899999999999999111 1224668899999999987643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=135.67 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|++++...+. +++++++|+..+.... +++||+|+++.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~fD~I~~np 131 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVV-EGTFDVIFSAP 131 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTC-CSCEEEEEECC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcc-cCceeEEEECC
Confidence 567899999999 99999988877444799999999999999999887655 6789999975443322 36899999997
Q ss_pred cccccCh-----------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 212 VLMFILD-----------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 212 vL~hl~d-----------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.+++.++ +.+..+++++.++|||||++++..+.. .....++.+.++++|
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~l~~~g 197 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK--------------EKLLNVIKERGIKLG 197 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC--------------HHHHHHHHHHHHHTT
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc--------------HhHHHHHHHHHHHcC
Confidence 7765432 124789999999999999999976321 123567888999999
Q ss_pred cccccccCC
Q psy8372 275 LKCVKSEKG 283 (883)
Q Consensus 275 f~vv~~~~~ 283 (883)
|.+...+..
T Consensus 198 ~~~~~~~~~ 206 (230)
T 3evz_A 198 YSVKDIKFK 206 (230)
T ss_dssp CEEEEEEEC
T ss_pred CceEEEEec
Confidence 987665443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=146.40 Aligned_cols=139 Identities=21% Similarity=0.284 Sum_probs=108.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+..+|||||||+|.++..++...+. +++++|+ +.+++.|++. .+++++.+|+.+ +.+. . |+|++.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~---~-D~v~~~ 268 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPK---G-DAIFIK 268 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCC---C-SEEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCC---C-CEEEEe
Confidence 356689999999999999988887655 7999999 8888877532 356899999876 2222 3 999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------cc-----CCcccccccchhhhhhhhhcccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YD-----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~~-----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
.++||+++++...+|++++++|||||++++.+......... ++ .......++..+|.++++++||+
T Consensus 269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~ 348 (368)
T 3reo_A 269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFR 348 (368)
T ss_dssp SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCe
Confidence 99999998888899999999999999999998764432110 00 01234456788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 349 ~v~~~~ 354 (368)
T 3reo_A 349 GFKVAS 354 (368)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 987644
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=131.69 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+.. +++++.+|+.+..+.. .+||+|++..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~--~~~D~v~~~~ 130 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL--PLPEAVFIGG 130 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS--CCCSEEEECS
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC--CCCCEEEECC
Confidence 56789999999999999988887 447999999999999999998876655 6789999988743332 4799999877
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+ + .. +++++.++|||||++++..... .+.......+++.|+++...
T Consensus 131 ~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 131 GG----S--QA-LYDRLWEWLAPGTRIVANAVTL---------------ESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CC----C--HH-HHHHHHHHSCTTCEEEEEECSH---------------HHHHHHHHHHHHHCSEEEEE
T ss_pred cc----c--HH-HHHHHHHhcCCCcEEEEEecCc---------------ccHHHHHHHHHhCCCcEEEE
Confidence 44 2 45 9999999999999999987432 23557778888888776544
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=132.37 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++...+. +|+|+|+|+.+++.|++++...+..++.++++|+.++.....+++||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 5679999999999999988887644 799999999999999999887666678899999987542111368999999876
Q ss_pred ccccChH------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFILDE------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~de------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
..+.... ....++++++++|||||.+++.+... .......+.+.++||+.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR---------------GLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH---------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH---------------HHHHHHHHHHHHCCCeeeecc
Confidence 5443210 13579999999999999999976211 012455677888898876543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=144.40 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=108.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+..+|||||||+|.++..++...+. +++++|+ +.+++.|++. .+++++..|+.+ +.+. . |+|++.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~---~-D~v~~~ 266 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPS---G-DTILMK 266 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCC---C-SEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCC---C-CEEEeh
Confidence 346789999999999999988887655 7999999 8888777542 457899999876 3222 3 999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------cc-----CCcccccccchhhhhhhhhcccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YD-----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~~-----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
.++||+++++...+|++++++|||||++++.+......... ++ .......++.++|.++++++||+
T Consensus 267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~ 346 (364)
T 3p9c_A 267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT 346 (364)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCC
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCc
Confidence 99999998888999999999999999999998765432110 01 11234456788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 347 ~v~~~~ 352 (364)
T 3p9c_A 347 GVKSTY 352 (364)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 987654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=128.10 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++...+.. ++ ++..|..+..+. ..++||+|++.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-VPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-CCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-cCCCCCEEEEC
Confidence 5677999999999999998777643 37999999999999999998776544 55 777777542222 12589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+++| ..+++++.++|||||++++.+... .+...+...+++.|+++..
T Consensus 102 ~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLPVGGRLVANAVTV---------------ESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp C-TTC------TTHHHHHHHTCCTTCEEEEEECSH---------------HHHHHHHHHHHHHCCEEEE
T ss_pred CcccH------HHHHHHHHHhcCCCCEEEEEeecc---------------ccHHHHHHHHHHcCCeeEE
Confidence 99988 268999999999999999988432 1344667777788766654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=145.63 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++...+. +++++|++ .++. +++.... ...++++..+|+.+.. + +||+|++.
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~----p-~~D~v~~~ 254 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREV----P-HADVHVLK 254 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCC----C-CCSEEEEE
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCC----C-CCcEEEEe
Confidence 56789999999999999988887665 78999994 4544 2222211 2345788999986321 2 79999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----c----cCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----Y----DDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----~----~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.++||+++++...++++++++|||||++++.+......... + ........++.++|.++++++||+++...
T Consensus 255 ~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 334 (348)
T 3lst_A 255 RILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVV 334 (348)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 99999998777899999999999999999998764432110 0 01122334678899999999999998766
Q ss_pred C
Q psy8372 282 K 282 (883)
Q Consensus 282 ~ 282 (883)
.
T Consensus 335 ~ 335 (348)
T 3lst_A 335 G 335 (348)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=134.49 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..+ + .+|+|+|+|+. .+.+..+|+.+.+... ++||+|++..+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 124 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---R-NPVHCFDLASL---------------DPRVTVCDMAQVPLED--ESVDVAVFCLS 124 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---C-SCEEEEESSCS---------------STTEEESCTTSCSCCT--TCEEEEEEESC
T ss_pred CCCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCC---------------CceEEEeccccCCCCC--CCEeEEEEehh
Confidence 45679999999999998755 2 46999999987 3468889988765433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+|| .+ +..++++++++|+|||.+++.++... ..+..++.++++++||+++....
T Consensus 125 l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~-------------~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 125 LMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR-------------FEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp CCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG-------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred ccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC-------------CCCHHHHHHHHHHCCCEEEEEec
Confidence 975 44 78999999999999999999885321 12678999999999999887543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-13 Score=137.30 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=97.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHh----hccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEIL----KDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.+.+++. .....+++++++|+.+++... ++ |.|
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~--~~-d~v 102 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS--GV-GEL 102 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC--CE-EEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC--CC-CEE
Confidence 46789999999999999988887533 79999999999986543332 233446789999999876543 34 666
Q ss_pred EE---ccccc--ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--ccC-Ccccccccchhhhhhhhhccccccc
Q psy8372 208 WI---QWVLM--FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--YDD-EDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 208 vs---~~vL~--hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--~~~-~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
++ ...++ |+++ +..++++++++|||||.+++........... ... ...........+..++.++||++..
T Consensus 103 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 53 33332 6644 5789999999999999999965332111100 000 0000111133578899999999876
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
.+.
T Consensus 181 ~~~ 183 (218)
T 3mq2_A 181 CRY 183 (218)
T ss_dssp EEE
T ss_pred eec
Confidence 543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-13 Score=138.26 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCC-HHHHHHH---HHHHhhccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQS-SKFIEQA---KEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S-~~~le~A---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||||||+|.++..++..... .|+|+|+| +.|++.| ++++...+..++.+.++|+.+++. ...+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~-~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF-ELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG-GGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh-hccCeEEEE
Confidence 46779999999999999988765444 79999999 7888777 666665555677899999988742 212345555
Q ss_pred EEcccccccC---hHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---ccC-Ccc-cccccchhhhhhhhhccccccc
Q psy8372 208 WIQWVLMFIL---DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---YDD-EDS-SVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 208 vs~~vL~hl~---ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---~~~-~~~-~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++....+.. ..+...++++++++|||||.+++........... ... ... ..+...+++..+++++||++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 5543322110 0113468999999999999999944322221100 000 000 0111222488999999999876
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
...
T Consensus 182 ~~~ 184 (225)
T 3p2e_A 182 VKE 184 (225)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=133.42 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEccCCCCCCCcCCCC-ccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIK-YDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~-FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...+. .+++++++|+.++.+...+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 4679999999999999987888777899999999999999999887655 567899999877544311358 9999998
Q ss_pred ccccccChHHHHHHHHHH--HHHhccCcEEEEEeccc
Q psy8372 211 WVLMFILDEDIIKFLNLC--KQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~--~r~LKPGG~lvi~~~~~ 245 (883)
..++ . .+...+++.+ .++|||||.+++.....
T Consensus 133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8854 4 3367888888 67899999999988543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=131.49 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++...+..++.++++|+.++.....+++||.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 4679999999999999988887543 799999999999999999887766678899999887531111368999988654
Q ss_pred ccccChH------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 213 LMFILDE------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 213 L~hl~de------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
..+.... ....++++++++|||||.+++.+... .........+.++||....
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~---------------~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR---------------GLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH---------------HHHHHHHHHHHHHTCEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCcccc
Confidence 4332210 02578999999999999999987211 0123445667777876543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=137.14 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++..+... +++...|+.+..+ .++||+|+++..
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~---~~~fD~Vv~n~~ 193 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP---FGPFDLLVANLY 193 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG---GCCEEEEEEECC
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc---CCCCCEEEECCc
Confidence 4678999999999999998888777 7999999999999999998866544 6788888765311 258999999765
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.++ +..++.++.++|||||+++++.... .+..++.+.++++||+++....
T Consensus 194 ~~~-----~~~~l~~~~~~LkpgG~lils~~~~---------------~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 194 AEL-----HAALAPRYREALVPGGRALLTGILK---------------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHH-----HHHHHHHHHHHEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred HHH-----HHHHHHHHHHHcCCCCEEEEEeecc---------------CCHHHHHHHHHHCCCEEEEEec
Confidence 543 5679999999999999999987432 2366889999999999876544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-12 Score=127.61 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...+. .+++++++|+.++.... +++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-DCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-CSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-cCCceEEEE
Confidence 467899999999999999888762 23799999999999999999887644 56789999987765222 368999999
Q ss_pred cccccc-------cChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QWVLMF-------ILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~h-------l~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+..+.. ...++...+++++.++|||||++++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 875511 11234678999999999999999998754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=138.12 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCC--ChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGI--GRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGt--G~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
+..+.|+..............+|||||||+ +.++..++.. .. .+|+++|.|+.|++.|++++.......+.++++|
T Consensus 60 ~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD 139 (277)
T 3giw_A 60 RANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEAD 139 (277)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEec
Confidence 344556665543332112346899999997 3344445543 22 2799999999999999998875433457899999
Q ss_pred CCCCCC----CcCCCCcc-----EEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCCcc-------ccc-
Q psy8372 192 IQDFKP----EDLNIKYD-----VIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYD- 253 (883)
Q Consensus 192 ~~~~~~----~~~~~~FD-----lVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~- 253 (883)
+.++.. ....+.|| .|+++.+|||+++++ +..++++++++|+|||+|++++........ .+.
T Consensus 140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~ 219 (277)
T 3giw_A 140 MLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA 219 (277)
T ss_dssp TTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh
Confidence 987521 00012454 688999999998854 689999999999999999999876542110 011
Q ss_pred CCcccccccchhhhhhhhhccccccc
Q psy8372 254 DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 254 ~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.......++.+++..+|. ||+++.
T Consensus 220 ~g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 220 RNMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred cCCCCccCCHHHHHHHhC--CCcccC
Confidence 111234567889999995 888653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=125.14 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC--ccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL--DKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++........ ++++..|+.+... +++||+|+++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~ 126 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKIITN 126 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---cCCceEEEEC
Confidence 46789999999999999988777 4479999999999999999987665554 7889999877443 3589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|. .++...++++++++|+|||.+++.++.
T Consensus 127 ~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 127 PPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 988763 245789999999999999999999854
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=143.63 Aligned_cols=138 Identities=22% Similarity=0.200 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
+++.+|||||||+|.++..++..++. +++++|+ +.+++.|++. ..++++.+|+.+ + .. . ||+|++..
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~-~~--~-~D~v~~~~ 275 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------SGIEHVGGDMFA-S-VP--Q-GDAMILKA 275 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-C-CC--C-EEEEEEES
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------CCCEEEeCCccc-C-CC--C-CCEEEEec
Confidence 45689999999999999988888755 7888999 9999877641 346889998876 2 22 3 99999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------cccC----Ccccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDD----EDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~~----~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++||+++++...++++++++|||||++++.+........ .++. ......++..+|.++++++||+++
T Consensus 276 ~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 355 (372)
T 1fp1_D 276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF 355 (372)
T ss_dssp SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceE
Confidence 999998866679999999999999999998765432211 0000 112334578899999999999988
Q ss_pred cccC
Q psy8372 279 KSEK 282 (883)
Q Consensus 279 ~~~~ 282 (883)
....
T Consensus 356 ~~~~ 359 (372)
T 1fp1_D 356 QVAC 359 (372)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=143.41 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...... +++++.|+.+..... ++||+|+++..
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~~--~~fD~Ii~npp 307 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTEE--ARFDIIVTNPP 307 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCTT--CCEEEEEECCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccccC--CCeEEEEECCc
Confidence 3577999999999999998888765 6999999999999999998876544 689999998876542 68999999999
Q ss_pred ccc---cChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMF---ILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~h---l~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+ ...+....+++++.++|||||.+++..+.
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 988 23356889999999999999999998753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9e-12 Score=133.81 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|..+..++.... .+|+|+|+|+.+++.|++++...+..+++++++|+.+..+ .++||+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~---~~~fD~Iv~np 184 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA---GQQFAMIVSNP 184 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT---TCCEEEEEECC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc---cCCccEEEECC
Confidence 3567999999999999998886643 3799999999999999999887665567889999876432 35899999983
Q ss_pred -------------cccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 212 -------------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 212 -------------vL~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
+++|.+. +.+..++.++.++|||||++++... ..+..++.+
T Consensus 185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------~~~~~~~~~ 248 (276)
T 2b3t_A 185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------WQQGEAVRQ 248 (276)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC----------------SSCHHHHHH
T ss_pred CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------chHHHHHHH
Confidence 4444331 3467899999999999999999742 123568899
Q ss_pred hhhhcccccccc
Q psy8372 269 LFSKANLKCVKS 280 (883)
Q Consensus 269 l~~~aGf~vv~~ 280 (883)
+++++||+.+..
T Consensus 249 ~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 249 AFILAGYHDVET 260 (276)
T ss_dssp HHHHTTCTTCCE
T ss_pred HHHHCCCcEEEE
Confidence 999999987654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=135.24 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|..+..++.... .+|+|+|+|+.|++.|+++....+..+++++++|+.++... ...++||+|+|.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 3577999999999999987775433 37999999999999999998876655688999998876532 113689999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+ .+ +..+++.+.++|||||.+++..... ......++...++.+||++....
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~-------------~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAAS-------------AEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC--------------CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCC-------------chHHHHHHHHHHHHcCCeEeEEE
Confidence 63 33 7789999999999999999874211 00123467778889999887654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=141.28 Aligned_cols=138 Identities=20% Similarity=0.290 Sum_probs=106.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+..+|||||||+|.++..++...+. +++++|+ +.|++.|++. ..+++..+|+.+ + .. .||+|++..
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~-~p---~~D~v~~~~ 254 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFT-S-IP---NADAVLLKY 254 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTT-C-CC---CCSEEEEES
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccC-C-CC---CccEEEeeh
Confidence 45679999999999999988877544 7999999 9999887641 236888898865 2 22 399999999
Q ss_pred cccccChHHHHHHHHHHHHHhcc---CcEEEEEecccCCCccc---------ccC---Ccccccccchhhhhhhhhcccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNK---NGIIIIKDNVASGVKNE---------YDD---EDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKP---GG~lvi~~~~~~~~~~~---------~~~---~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
++||+++++...++++++++||| ||++++.+......... ++- ......++..+|.++++++||+
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~ 334 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 334 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCC
Confidence 99999886677999999999999 99999998764332110 000 0113345788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 335 ~~~~~~ 340 (352)
T 1fp2_A 335 HYKISP 340 (352)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 886544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-12 Score=135.37 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...++.+|||||||+|.++..++++ ...+|+|+|+|+.|++.|++++...+..+++++++|+.+++ +++||+|++
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----d~~FDvV~~ 194 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----GLEFDVLMV 194 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----GCCCSEEEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----CCCcCEEEE
Confidence 3467899999999999876545444 23379999999999999999988765567899999998864 268999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
... +++ ...++++++++|||||++++..
T Consensus 195 ~a~---~~d--~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 195 AAL---AEP--KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CTT---CSC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCC---ccC--HHHHHHHHHHHcCCCcEEEEEc
Confidence 654 444 7799999999999999999987
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-12 Score=126.98 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++...... ..+.+...|+.+..+.. ++||+|++..
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~ 108 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI--PDIDIAVVGG 108 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS--CCEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC--CCCCEEEECC
Confidence 567899999999999999887777 6799999999999999998876644 56688888876622221 4899999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
+++|+ ..+++++.++|+|||.+++..+.. .+...+...++++||.+
T Consensus 109 ~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 109 SGGEL-----QEILRIIKDKLKPGGRIIVTAILL---------------ETKFEAMECLRDLGFDV 154 (192)
T ss_dssp CTTCH-----HHHHHHHHHTEEEEEEEEEEECBH---------------HHHHHHHHHHHHTTCCC
T ss_pred chHHH-----HHHHHHHHHhcCCCcEEEEEecCc---------------chHHHHHHHHHHCCCce
Confidence 87654 579999999999999999987421 13457788889999844
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-12 Score=133.97 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++...... +++++++|+.++......++||+|+++..
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 67899999999999999877776658999999999999999998876443 57899999988754222468999999765
Q ss_pred cccc------------------ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFI------------------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl------------------~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
+.+. ...++..+++.+.++|||||++++.... ....++...+.+.|
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------ERLLDIIDIMRKYR 192 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT----------------TTHHHHHHHHHHTT
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH----------------HHHHHHHHHHHHCC
Confidence 5433 1123568999999999999999996421 13456788888889
Q ss_pred ccccccc
Q psy8372 275 LKCVKSE 281 (883)
Q Consensus 275 f~vv~~~ 281 (883)
|......
T Consensus 193 ~~~~~~~ 199 (259)
T 3lpm_A 193 LEPKRIQ 199 (259)
T ss_dssp EEEEEEE
T ss_pred CceEEEE
Confidence 8876543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=127.81 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...+..++++...|+.+..+.. ++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~i~~~~~ 152 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR--APFDAIIVTAA 152 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG--CCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC--CCccEEEEccc
Confidence 567899999999999999888874 469999999999999999988766566789999988754433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+++ .+.++|||||++++....
T Consensus 153 ~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 999975 478999999999998854
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=125.40 Aligned_cols=119 Identities=11% Similarity=0.036 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ +|+|+|+|+.|++. ..+++++++|+.+..+ . ++||+|+++..+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~-~--~~fD~i~~n~~~ 88 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSIN-Q--ESVDVVVFNPPY 88 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTBC-G--GGCSEEEECCCC
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhcc-c--CCCCEEEECCCC
Confidence 46699999999999999887777 79999999999988 2356899999887322 2 589999999988
Q ss_pred cccChH-------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~de-------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++.++. +...++.++.+.| |||.+++..... ....++.++++++||+.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---------------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---------------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---------------CCHHHHHHHHHHCCCcEEEEEe
Confidence 865442 3457888999999 999999987422 2466889999999998876544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=132.92 Aligned_cols=149 Identities=17% Similarity=0.079 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
....+.++..+..... ...++.+|||||||+|..+..++..... +|+++|+|+.+++.|++++...+..+++++++|+
T Consensus 60 ~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~ 139 (249)
T 3g89_A 60 EVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA 139 (249)
T ss_dssp HHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCH
T ss_pred HHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcH
Confidence 3344556666543221 2246789999999999999888776443 8999999999999999998877666689999999
Q ss_pred CCCCCC-cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 193 QDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 193 ~~~~~~-~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
.++... ...++||+|+|..+ .+ +..+++.+.++|||||++++..... ......++...+.
T Consensus 140 ~~~~~~~~~~~~fD~I~s~a~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~-------------~~~e~~~~~~~l~ 200 (249)
T 3g89_A 140 EVLAREAGHREAYARAVARAV----AP--LCVLSELLLPFLEVGGAAVAMKGPR-------------VEEELAPLPPALE 200 (249)
T ss_dssp HHHTTSTTTTTCEEEEEEESS----CC--HHHHHHHHGGGEEEEEEEEEEECSC-------------CHHHHTTHHHHHH
T ss_pred HHhhcccccCCCceEEEECCc----CC--HHHHHHHHHHHcCCCeEEEEEeCCC-------------cHHHHHHHHHHHH
Confidence 877542 12368999999754 22 5689999999999999999866211 1112346777888
Q ss_pred hcccccccccC
Q psy8372 272 KANLKCVKSEK 282 (883)
Q Consensus 272 ~aGf~vv~~~~ 282 (883)
..|+++.....
T Consensus 201 ~~G~~~~~~~~ 211 (249)
T 3g89_A 201 RLGGRLGEVLA 211 (249)
T ss_dssp HHTEEEEEEEE
T ss_pred HcCCeEEEEEE
Confidence 88998876543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=132.08 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHH-----hhccC-----CCccEEEccCCCCCCCc--
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEI-----LKDCD-----KLDKCYNVGIQDFKPED-- 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~-S~~~le~A~~~~-----~~~~~-----~~~~~~~~d~~~~~~~~-- 199 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+ |+.+++.|++++ ..... .++.+...+..+.....
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 356799999999999999887777658999999 899999999998 33222 24566655554421100
Q ss_pred --CCCCccEEEEcccccccChHHHHHHHHHHHHHhc---c--CcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 200 --LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILN---K--NGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 200 --~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LK---P--GG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
..++||+|++..+++|.++ ...+++.+.++|+ | ||.+++....... ........+...+++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~----------~~~~~~~~~~~~l~~ 225 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVTFTHHRP----------HLAERDLAFFRLVNA 225 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEEECC------------------CTHHHHHHHH
T ss_pred hccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEEEEeeec----------ccchhHHHHHHHHHh
Confidence 1358999999999999855 8899999999999 9 9998775422110 111124567778889
Q ss_pred cc-ccccccc
Q psy8372 273 AN-LKCVKSE 281 (883)
Q Consensus 273 aG-f~vv~~~ 281 (883)
+| |++....
T Consensus 226 ~G~f~v~~~~ 235 (281)
T 3bzb_A 226 DGALIAEPWL 235 (281)
T ss_dssp STTEEEEEEE
T ss_pred cCCEEEEEec
Confidence 99 9887653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-12 Score=134.10 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..++.. .++++++|+.++.. +++||+|++..
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~Vi~~~ 200 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEEECC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccEEEECC
Confidence 468899999999999999888887768999999999999999998876544 47899999998776 36899999965
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
... ...++.++.++|||||.+++.++..... ........+...+.++|+.+..
T Consensus 201 p~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred chh------HHHHHHHHHHHCCCCeEEEEEEeecccc---------ccccHHHHHHHHHHHcCCeeEE
Confidence 421 3468899999999999999988653211 0112345677888888887654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=129.17 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC----CCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD----FKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++... .++.++.+|+.+ .+.. ++||+|
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~---~~~D~v 147 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV---EKVDVI 147 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS---CCEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC---ccEEEE
Confidence 567899999999999999888773 348999999999999999987654 567888888876 3322 589999
Q ss_pred EEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 208 WIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 208 vs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+ +++++ +....+++++.++|||||++++.. ..... +...........++. ++.++||+++....
T Consensus 148 ~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~----~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 148 Y-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAI-KARSI----DVTKDPKEIFKEQKE-ILEAGGFKIVDEVD 212 (230)
T ss_dssp E-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE-EGGGT----CSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred E-----EecCChhHHHHHHHHHHHhCCCCcEEEEEE-ecCCC----CCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence 8 44443 223678999999999999999972 21111 000000111235666 88999998876554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=150.22 Aligned_cols=145 Identities=14% Similarity=-0.013 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.||||||||.|.++..++..|+. |+|||+|+.+++.|+.++...+...+++.++++.++.....+++||+|+|..+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 35679999999999999999988875 99999999999999999887654567899999887632111368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
++|+++.+....+..+.+.|+++|..++.........- .+......+|..+++.++|.....+.+.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~------~~~p~~~~~~~~~i~~~~~~~~~~~~g~ 209 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPF------YWGVSQPDDPRELIEQCAFYRLIGEFDT 209 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSS------GGGGGSCSSGGGGTTTSSEEEEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEeccccccc------cccCCCCccHHHhcCHHHHHHHHHHcCC
Confidence 99997744334456678889999987777654332211 1222233456666666666655555443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-12 Score=136.50 Aligned_cols=142 Identities=10% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs~~ 211 (883)
.++.+|||+|||||.++..++..+..+|+|+|+|+.|++.+.++... ...+...++..+.....+ .+||+|++..
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r----v~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR----VRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT----EEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc----cceecccCceecchhhCCCCCCCEEEEEe
Confidence 45779999999999999988888777899999999999986543211 101111222222221112 3599999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcccccC----C-cccccccchhhhhhhhhcccccccccCC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKNEYDD----E-DSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~~~~~----~-~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+++++ ..++.+++++|||||.+++..-. .......... . ...+.....++..++.++||.+......
T Consensus 160 sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 160 SFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp SSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred eHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 88766 36999999999999999986311 1111111110 0 1112234568889999999998765443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=129.67 Aligned_cols=145 Identities=10% Similarity=-0.030 Sum_probs=101.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccE
Q psy8372 130 KSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 206 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDl 206 (883)
....+|++|||+|||+|.++..++.. |.. .|+|+|+|+.|++.+++++... .++..+..|...... ....+++|+
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEE
Confidence 34578999999999999999988876 444 8999999999999999887643 456778777765432 122468999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
|++.. .|. ++...++.+++++|||||++++......... ...... ....-.+.++++||+++....-..+
T Consensus 151 Vf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~---~~p~~~---~~~~ev~~L~~~GF~l~e~i~L~pf 220 (233)
T 4df3_A 151 LYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDV---TTEPSE---VYKREIKTLMDGGLEIKDVVHLDPF 220 (233)
T ss_dssp EEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHH---HTCCCH---HHHHHHHHHHHTTCCEEEEEECTTT
T ss_pred EEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCC---CCChHH---HHHHHHHHHHHCCCEEEEEEccCCC
Confidence 98743 343 3477899999999999999999763321110 000000 1123456678899998876554433
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=130.39 Aligned_cols=109 Identities=10% Similarity=0.051 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~~ 211 (883)
++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++...+..++.++++|+.++.+. ..+++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 4679999999999999988887654 7999999999999999998877767789999998774210 1136999999985
Q ss_pred cccccChHHH------HHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDI------IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~------~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+...... ..++++++++|||||.+++.+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 5443322111 259999999999999999987
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=135.21 Aligned_cols=103 Identities=25% Similarity=0.242 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|+++....+. .+++++.+|+.++.... ++||+|++..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~D~Ivs~~ 139 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV--EKVDVIISEW 139 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC--SCEEEEEECC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC--CcEEEEEEcC
Confidence 46789999999999999988888766899999997 99999998876644 56789999998875443 6899999987
Q ss_pred c---ccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 212 V---LMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 212 v---L~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
+ +.|. ..+..++.++.++|||||.++.
T Consensus 140 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 140 MGYFLLFE--SMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CBTTBTTT--CHHHHHHHHHHHHEEEEEEEES
T ss_pred chhhccCH--HHHHHHHHHHHhhcCCCcEEEc
Confidence 4 4444 3477899999999999999873
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-12 Score=132.09 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++..... .++++++|+.+.... ...++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 46789999999999999988888654 799999999999999998876544 557777887662221 01268999999
Q ss_pred ccccccc------ChHH------------------HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchh
Q psy8372 210 QWVLMFI------LDED------------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 265 (883)
Q Consensus 210 ~~vL~hl------~ded------------------~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~ 265 (883)
+..+++. +.+. +..++++++++|||||++++.... ......
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~~ 172 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---------------HNQADE 172 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---------------TSCHHH
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---------------CccHHH
Confidence 7554332 2111 168899999999999995444421 123557
Q ss_pred hhhhhh--hccccccccc
Q psy8372 266 FCLLFS--KANLKCVKSE 281 (883)
Q Consensus 266 ~~~l~~--~aGf~vv~~~ 281 (883)
+..++. ++||..+...
T Consensus 173 ~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 173 VARLFAPWRERGFRVRKV 190 (215)
T ss_dssp HHHHTGGGGGGTEECCEE
T ss_pred HHHHHHHhhcCCceEEEE
Confidence 788888 8998766543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-12 Score=128.62 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=98.3
Q ss_pred HHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEe
Q psy8372 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLE 164 (883)
Q Consensus 86 ~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD 164 (883)
|++..+.+++..-.++..+....+.. ........+....... .++..+|||+|||+|.++..++...+. +|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~H~STR-eRLp~ld~fY~~~~~~---l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~D 80 (200)
T 3fzg_A 5 WDKLLKKYNQGQLSIEDLLKIHSSTN-ERVATLNDFYTYVFGN---IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYD 80 (200)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHSHHHH-TTGGGHHHHHHHHHHH---SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHHHHHHHHhhhhHHHHHhhCCCHH-HHhHhHHHHHHHHHhh---cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEe
Confidence 44455556655555554444211111 0112233333332211 145779999999999999877665333 899999
Q ss_pred CCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 165 QSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 165 ~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+.|++.|++++...+.. ++++ .|.....+ +++||+|++..++||+ ++....+.++++.|+|||.++-..
T Consensus 81 i~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~---~~~~DvVLa~k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 81 IDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY---KGTYDVVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp SCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT---TSEEEEEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCccEEE--ecccccCC---CCCcChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999876554 3333 55543322 3689999999999999 346677789999999999888766
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=128.86 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC------CccceeccCCC----------CceeeE--ecCH
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG------AREFVVPTHEP----------NKFYSL--VQSP 404 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g------a~~f~v~~~~~----------~~~~~L--~~Sp 404 (883)
.+.+.+.+|++| ...||.||.+|.+... .+.. ...|.+..... .....| ++||
T Consensus 103 ~~~~~~~Ir~~f-~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 103 ITLMERELVEIF-RALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHH-HHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 567889999999 5899999999999652 1111 12243431111 122234 4788
Q ss_pred HHHHHHHHccCCC-cEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 405 QQLKQLLMVGSVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 405 ql~kq~l~~~~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.+..-+ ..+..+ |+|+||+|||+|..+.+|.|||+|+|+.+++. |+.+++..++.+++.+
T Consensus 182 ~llr~l-~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 182 MQVRYM-VAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HHHHHH-HHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 766443 223333 89999999999887777889999999999886 5677777766666554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=136.68 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|+++....+. .+++++.+|+.++... ++||+|++..
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---~~~D~Ivs~~ 124 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEP 124 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEEECC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC---CceeEEEEeC
Confidence 46789999999999999988887766899999996 88999998876644 5678999999887543 4899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++|+..+.....+.+++++|||||.+++..
T Consensus 125 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 125 MGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred chhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999876667788889999999999998654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=124.84 Aligned_cols=99 Identities=21% Similarity=0.134 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++..... +++++.+|+.+..+. .++||+|++..+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~--~~~fD~v~~~~~ 143 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEE--EKPYDRVVVWAT 143 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGG--GCCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccccc--CCCccEEEECCc
Confidence 567899999999999999888877 579999999999999999887544 668889998763322 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+++ ++.++|||||++++....
T Consensus 144 ~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 144 APTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp BSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred HHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 999863 488899999999998754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-12 Score=127.43 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++......+++++++|+.++.+.. .++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~-~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-GTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC-CCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc-CCCCCEEEECCCC
Confidence 467999999999999998888877689999999999999999988765556789999987643322 3689999998774
Q ss_pred cccChHHHHHHHHHHHH--HhccCcEEEEEecc
Q psy8372 214 MFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 244 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~ 244 (883)
+ .. ....+++.+.+ +|+|||.+++....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4 32 35677888865 59999999998754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=136.54 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++...+. ..++++++|+.+++... ++||+|++..
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~Iis~~ 141 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV--EKVDIIISEW 141 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS--SCEEEEEECC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC--CceEEEEEcc
Confidence 3678999999999999998888877689999999 499999999887644 34789999999875443 6899999987
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+.+++.. +.+..++.++.++|||||.++..
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 6555422 34788999999999999998843
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-12 Score=126.85 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=91.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~ 210 (883)
..++.+|||+|||. | ++|+|+.|++.|+++... .+++.++|+.+++.. ..+++||+|+|.
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEEC
Confidence 35788999999996 2 389999999999988643 268899999877541 013689999999
Q ss_pred cccccc-ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 211 WVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 211 ~vL~hl-~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
.++||+ ++ +..++++++++|||||++++..+..... ....+.++..++.++++++||
T Consensus 71 ~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 71 LVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETAV------DNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSS------CSSSSSCCHHHHHHHHHHTTC
T ss_pred ChhhhcccC--HHHHHHHHHHHCCCCEEEEEEccccccc------ccccccCCHHHHHHHHHHCCC
Confidence 999999 66 6799999999999999999976532211 112333467899999999999
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=126.30 Aligned_cols=143 Identities=13% Similarity=-0.039 Sum_probs=97.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++... . .+|+|+|+|+.|++.+.+++... .++.++.+|+.+... ....++||+|+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEE
Confidence 3567899999999999999888763 2 47999999999988888777654 456888999877421 11236899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
+... . .+....++.++.++|||||.+++........ .. ...... ...+ .++++++||+++....-..+
T Consensus 153 ~~~~--~--~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~---~~-~~~~~~-~~~~-~~~l~~~Gf~~~~~~~~~~~ 220 (233)
T 2ipx_A 153 ADVA--Q--PDQTRIVALNAHTFLRNGGHFVISIKANCID---ST-ASAEAV-FASE-VKKMQQENMKPQEQLTLEPY 220 (233)
T ss_dssp ECCC--C--TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC---SS-SCHHHH-HHHH-HHTTGGGTEEEEEEEECTTT
T ss_pred EcCC--C--ccHHHHHHHHHHHHcCCCeEEEEEEcccccc---cC-CCHHHH-HHHH-HHHHHHCCCceEEEEecCCc
Confidence 9655 1 1234567899999999999999965431100 00 000000 1122 58889999998875443333
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=138.41 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+..+|||||||+|.++..++...+. +++++|+ +.+++.|++ ...++++..|+.+ + .. .||+|++..+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~~---~~D~v~~~~v 260 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-S-IP---SADAVLLKWV 260 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-C-CC---CCSEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-C-CC---CceEEEEccc
Confidence 4579999999999999988888655 7999999 788877654 1336888888876 2 22 4999999999
Q ss_pred ccccChHHHHHHHHHHHHHhcc---CcEEEEEecccCCCccc---------cc----CCcccccccchhhhhhhhhcccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNK---NGIIIIKDNVASGVKNE---------YD----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKP---GG~lvi~~~~~~~~~~~---------~~----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+||+++++...++++++++||| ||++++.+......... ++ .......++..+|.++++++||+
T Consensus 261 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 340 (358)
T 1zg3_A 261 LHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFS 340 (358)
T ss_dssp GGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCC
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCC
Confidence 9999887677999999999999 99999988764322110 00 01122345788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
++....
T Consensus 341 ~~~~~~ 346 (358)
T 1zg3_A 341 SYKITP 346 (358)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 887644
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=124.29 Aligned_cols=104 Identities=20% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.+.+.+... .++.++.+|+..... ....++||+|+++
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 5678999999999999988877642 37999999999887776655532 345677777766310 1112689999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. .++ ++...++++++++|||||++++..
T Consensus 134 ~-~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I-AQK---NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C-CST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cCh---hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 222 235567999999999999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=133.06 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHh-CC----CeEEEEeCCHHHHHHHHHHHhhc----------------------c-
Q psy8372 134 GKTRVLDVGAGIGR----ISKYLLAK-HF----DKIDLLEQSSKFIEQAKEEILKD----------------------C- 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~----~~~~l~~~-g~----~~V~gvD~S~~~le~A~~~~~~~----------------------~- 181 (883)
++.+|||+|||||. ++..++.. +. .+|+|+|+|+.|++.|++..-.. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 45444443 21 27999999999999999864100 0
Q ss_pred --------CCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 182 --------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 182 --------~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+.|.+.|+.+.+.. ..++||+|+|.++++|+.++...+++++++++|+|||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 02468899998874322 1358999999999999988777899999999999999999854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=123.77 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|+++.......++++...|+.+..+ .++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~ 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---EPPFDGVISRAF 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---CSCEEEEECSCS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---cCCcCEEEEecc
Confidence 467999999999999998887643 3799999999999999999887655557899999987653 258999998643
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+ +..++..+.++|+|||.+++..
T Consensus 142 ----~~--~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ----AS--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SS--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 22 6689999999999999999985
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=136.93 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=90.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++...+. ..++++++|+.++... ++||+|++.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Iv~~ 136 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDVIISE 136 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---SCEEEEEEC
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---CcceEEEEc
Confidence 35678999999999999998888887689999999 999999999887643 4478999999887644 589999998
Q ss_pred ccccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+.+++.. ..+..++.++.++|||||.+++...
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 76666643 3477899999999999999987653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=125.05 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
......++..+. .....++.+|||+|||+|.++..++.. +.. +|+|+|+|+.|++...+.+... .++.++.+|+
T Consensus 59 skla~~ll~~l~--~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da 134 (232)
T 3id6_C 59 SKLAGAILKGLK--TNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADA 134 (232)
T ss_dssp CHHHHHHHTTCS--CCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCT
T ss_pred HHHHHHHHhhhh--hcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEccc
Confidence 334444444441 123467899999999999999888765 322 7999999999986655544432 4568889998
Q ss_pred CCCCC-CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 193 QDFKP-EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 193 ~~~~~-~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
..... ....++||+|++..+. ++ ....+...+.++|||||+|++........ ...... .........++
T Consensus 135 ~~~~~~~~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d-~t~~~~-----e~~~~~~~~L~ 204 (232)
T 3id6_C 135 RFPQSYKSVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSID-VTKDPK-----EIYKTEVEKLE 204 (232)
T ss_dssp TCGGGTTTTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC--------CCSS-----SSTTHHHHHHH
T ss_pred ccchhhhccccceEEEEecCCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcc-cCCCHH-----HHHHHHHHHHH
Confidence 75432 1123689999998654 22 23345566677999999999985322100 000000 01234456777
Q ss_pred hcccccccccCC
Q psy8372 272 KANLKCVKSEKG 283 (883)
Q Consensus 272 ~aGf~vv~~~~~ 283 (883)
++||+++....-
T Consensus 205 ~~gf~~~~~~~l 216 (232)
T 3id6_C 205 NSNFETIQIINL 216 (232)
T ss_dssp HTTEEEEEEEEC
T ss_pred HCCCEEEEEecc
Confidence 889998876543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-12 Score=124.52 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..... .+++++.+|+.+..+. .+++||+|+++.
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-LTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-BCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh-hcCCCCEEEECC
Confidence 45779999999999999988887666899999999999999999876543 3567888888764221 125799999987
Q ss_pred cccccChHHHHHHHHHHH--HHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~~~ 245 (883)
.+++ ......++.+. ++|||||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 7542 22456677776 9999999999988544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=122.86 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC--cCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE--DLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..... .+++++++|+.+..+. ..+++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 35779999999999999988877666899999999999999999876643 3568899998764321 00358999999
Q ss_pred cccccccChHHHHHHHHHH--HHHhccCcEEEEEecccC
Q psy8372 210 QWVLMFILDEDIIKFLNLC--KQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~--~r~LKPGG~lvi~~~~~~ 246 (883)
+..++.. . ....+..+ .++|+|||.+++......
T Consensus 123 ~~~~~~~-~--~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQ-E--IVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGC-C--HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCch-h--HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 8875422 2 34566666 889999999999876543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=119.51 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|+++....+..+++++..|+.+. ... ++||+|++..+
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~D~i~~~~~ 109 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV-LDK--LEFNKAFIGGT 109 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH-GGG--CCCSEEEECSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc-ccC--CCCcEEEECCc
Confidence 4677999999999999987776 4457999999999999999998876555678899988762 222 58999999988
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+ +..++++++++ |||.+++.++.. ....++.+.++++|+.+..
T Consensus 110 ----~~--~~~~l~~~~~~--~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 110 ----KN--IEKIIEILDKK--KINHIVANTIVL---------------ENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp ----SC--HHHHHHHHHHT--TCCEEEEEESCH---------------HHHHHHHHHHHHTTCEEEE
T ss_pred ----cc--HHHHHHHHhhC--CCCEEEEEeccc---------------ccHHHHHHHHHHcCCeEEE
Confidence 22 56789999988 999999988432 1345678888888876543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-12 Score=124.18 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++..+.. |+|+|+|+.+++.|++++..... ++++++.|+.+..+. ...++||+|+++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999988888766 99999999999999999876654 668888888764221 1023799999998
Q ss_pred cccccChHHHHHHHHHHH--HHhccCcEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~~~~ 246 (883)
+++ .. ...+++.+. ++|||||.+++......
T Consensus 119 ~~~--~~--~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA--MD--LAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT--SC--TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc--hh--HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 765 22 234555555 99999999999886543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=130.18 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|++++... +..++++..+|+.+..+ +++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---~~~fD~Vi~ 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---DQMYDAVIA 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---SCCEEEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---CCCccEEEE
Confidence 56789999999999999988876 3 237999999999999999998765 55567889999887322 258999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
|+++ +..+++++.++|||||.+++.++.. .....+...+.++||..+..
T Consensus 186 -----~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~---------------~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 186 -----DIPD--PWNHVQKIASMMKPGSVATFYLPNF---------------DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp -----CCSC--GGGSHHHHHHTEEEEEEEEEEESSH---------------HHHHHHHHHSGGGTEEEEEE
T ss_pred -----cCcC--HHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCeEEEE
Confidence 4544 5689999999999999999998432 12346677788889877654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=122.79 Aligned_cols=102 Identities=15% Similarity=0.019 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++.......++.+...|+....+. .++||+|++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~ 153 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP--LAPYDRIYTT 153 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG--GCCEEEEEES
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC--CCCeeEEEEC
Confidence 5678999999999999998887763 47999999999999999988766555578888887543321 3589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|+++ ++.++|||||.+++....
T Consensus 154 ~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 154 AAGPKIPE--------PLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SBBSSCCH--------HHHHTEEEEEEEEEEESS
T ss_pred CchHHHHH--------HHHHHcCCCcEEEEEECC
Confidence 99999853 688999999999998743
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-11 Score=133.49 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC---CccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK---LDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+|||+|||+|.++..++..++ .+|+|+|+|+.|++.|++++...+.. .++++..|+.+..+ +++||+|+
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~---~~~fD~Ii 297 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---PFRFNAVL 297 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC---TTCEEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC---CCCeeEEE
Confidence 3457999999999999998988863 38999999999999999998766432 35778999887432 35899999
Q ss_pred Eccccccc---ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 209 IQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++..+|+. .+.....+++++.++|||||.+++..+.
T Consensus 298 ~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 298 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp ECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 99998863 2333457899999999999999998743
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=126.43 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++...+... +++...|+.+..+ +++||+|++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~v~~ 168 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---EENVDHVIL 168 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---CCSEEEEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---CCCcCEEEE
Confidence 56789999999999999988887 4 3379999999999999999987765443 7889999886532 257999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc--ccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN--LKCVKSE 281 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG--f~vv~~~ 281 (883)
. .++ +..+++++.++|||||.+++..+.. ....++...++++| |..+...
T Consensus 169 ~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 169 D-----LPQ--PERVVEHAAKALKPGGFFVAYTPCS---------------NQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp C-----SSC--GGGGHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHTGGGBSCCEEE
T ss_pred C-----CCC--HHHHHHHHHHHcCCCCEEEEEECCH---------------HHHHHHHHHHHHcCCCccccEEE
Confidence 3 333 5578999999999999999987432 13456778888898 8766543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=137.41 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|+++....... .+++..|+.+.. +++||+|+++.+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----~~~fD~Iv~~~~ 270 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----KGRFDMIISNPP 270 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----CSCEEEEEECCC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----cCCeeEEEECCC
Confidence 4569999999999999988888764 8999999999999999998765433 467888876643 358999999999
Q ss_pred cccc---ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+. ..++...++++++++|||||.+++..+.
T Consensus 271 ~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 271 FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9863 3355789999999999999999998753
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=126.23 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhh------ccCCCccEEEccCCC-CC--CCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILK------DCDKLDKCYNVGIQD-FK--PEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~------~~~~~~~~~~~d~~~-~~--~~~~~~ 202 (883)
.++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++.. ....++.++++|+.+ ++ .. ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~--~~ 122 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KG 122 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC--TT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC--Cc
Confidence 35668999999999999988777544 799999999999999987653 234567899999987 32 22 36
Q ss_pred CccEEEEcccccccChHH------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDED------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||.|++...-.+..... ...++++++++|||||.|++.+
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 899998765433321100 1379999999999999999986
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-11 Score=131.03 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhh----ccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++.. ....+++++.+|+.++.....+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 456799999999999999887653 34899999999999999998742 1345678899998765432113689999
Q ss_pred EEcccccccChHHH--HHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 208 WIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 208 vs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
++....++.+...+ ..++++++++|||||++++...... ........+.+.++++||..+...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW-----------LDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT-----------TCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc-----------cchHHHHHHHHHHHhCCCCcEEEE
Confidence 99877665443222 5899999999999999999863210 111235578889999999877544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-11 Score=130.04 Aligned_cols=101 Identities=22% Similarity=0.115 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..+.. +|+|+|+|+.+++.|++++...+..++++...|+.+..+.. ++||+|++.
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~--~~fD~Iv~~ 151 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF--SPYDVIFVT 151 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG--CCEEEEEEC
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC--CCeEEEEEc
Confidence 56789999999999999988877542 69999999999999999988766556789999988754433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+++|++ +.+.++|||||++++...
T Consensus 152 ~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 152 VGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp SBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred CCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 9999996 357889999999999863
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=125.53 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcC----CCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL----NIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~----~~~FDl 206 (883)
++.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+... .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 56799999999999999887642 23799999999999999999887654 357899999755322111 158999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
|++....++..+ ...++..+ ++|||||++++.+...
T Consensus 138 V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCC
Confidence 999988877743 55777777 9999999999877543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-11 Score=124.83 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++... +..++++...|+.+.+... ++||+|++
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~--~~~D~v~~ 172 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE--AAYDGVAL 172 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT--TCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC--CCcCEEEE
Confidence 56789999999999999988877 4 347999999999999999998765 4556788999988763332 58999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
. .++ +..+++++.++|+|||.+++..+... ...+....++++||..+.
T Consensus 173 ~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 173 D-----LME--PWKVLEKAALALKPDRFLVAYLPNIT---------------QVLELVRAAEAHPFRLER 220 (258)
T ss_dssp E-----SSC--GGGGHHHHHHHEEEEEEEEEEESCHH---------------HHHHHHHHHTTTTEEEEE
T ss_pred C-----CcC--HHHHHHHHHHhCCCCCEEEEEeCCHH---------------HHHHHHHHHHHCCCceEE
Confidence 3 333 45789999999999999999884321 234566677778887654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=125.52 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+...+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 56799999999999999887743 23799999999999999999887654 36789999997754301136899999875
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
... ....+++.+.++|||||++++.+..+.
T Consensus 151 ~~~-----~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 151 AKA-----QSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp TSS-----SHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred cHH-----HHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 432 256799999999999999998775543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-12 Score=134.02 Aligned_cols=103 Identities=11% Similarity=-0.049 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...+. .+++++++|+.++.+ +++||+|+++.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---FLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---GCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---cCCCCEEEECCC
Confidence 67899999999999999888876 5699999999999999999887654 467899999987652 358999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++|..+ ....+.+++++|+|||.+++..
T Consensus 154 ~~~~~~--~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDY--ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGG--GGSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcch--hhhHHHHHHhhcCCcceeHHHH
Confidence 999865 4457788999999999977654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=125.10 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGI 192 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~ 192 (883)
....++..+.... ...++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+.. +++++.+|+
T Consensus 40 ~~~~~l~~l~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 40 MTGQLLTTLAATT-NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHHHS-CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHHHhh-CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence 3445555554321 112345999999999999998887532 37999999999999999998876543 678899888
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.+..+...+++||+|++..... +...+++++.++|||||++++.+..+.+
T Consensus 119 ~~~l~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~~g 168 (221)
T 3dr5_A 119 LDVMSRLANDSYQLVFGQVSPM-----DLKALVDAAWPLLRRGGALVLADALLDG 168 (221)
T ss_dssp HHHGGGSCTTCEEEEEECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTGGG
T ss_pred HHHHHHhcCCCcCeEEEcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence 7654321136899999876432 2567899999999999999997765543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-11 Score=124.52 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=88.9
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh--CC-CeEEEEeCCHHHHHHHHHHHhhc---cCC-C-------
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HF-DKIDLLEQSSKFIEQAKEEILKD---CDK-L------- 184 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--g~-~~V~gvD~S~~~le~A~~~~~~~---~~~-~------- 184 (883)
..++..+.... ...++.+|||+|||+|.++..++.. .. .+|+|+|+|+.|++.|++++... ... .
T Consensus 37 ~~l~~~~l~~~-~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 37 TEIFQRALARL-PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHHTS-SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-ccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 34555544322 1135679999999999999988776 22 37999999999999999876543 111 1
Q ss_pred ------------------cc-------------EEEccCCCCCCC---cCCCCccEEEEcccccccCh-------HHHHH
Q psy8372 185 ------------------DK-------------CYNVGIQDFKPE---DLNIKYDVIWIQWVLMFILD-------EDIIK 223 (883)
Q Consensus 185 ------------------~~-------------~~~~d~~~~~~~---~~~~~FDlVvs~~vL~hl~d-------ed~~~ 223 (883)
++ +.++|+.+.... ...++||+|+|+..+.+... +....
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 45 889998764320 01248999999887665532 45679
Q ss_pred HHHHHHHHhccCcEEEEEec
Q psy8372 224 FLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 224 ~l~~~~r~LKPGG~lvi~~~ 243 (883)
++++++++|||||++++...
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHhcCCCcEEEEeCc
Confidence 99999999999999999553
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.4e-11 Score=137.82 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++...+. .+++++.+|+.++... ++||+|++..
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~---~~fD~Ivs~~ 232 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEP 232 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEECCC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC---CCeEEEEEeC
Confidence 45779999999999999988776666899999998 99999998877654 5679999999886433 4899999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++|+.+++....+.+++++|||||.+++..
T Consensus 233 ~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 233 MGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred chHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 8888876667788889999999999998643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=123.81 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC-cCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE-DLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~-~~~~~FDlVvs 209 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+.. +++++.+|+.+..+. ...++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 567999999999999998877633 37999999999999999998876543 678999998663221 21248999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.... .....+++++.++|||||++++.+....
T Consensus 143 d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 143 DADK-----PNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp CSCG-----GGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred CCch-----HHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 6532 3366799999999999999999876554
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-12 Score=131.36 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++..... ..++.++.. .++.. ..||.+.+
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~d~~~~ 109 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--ADFEQ----GRPSFTSI 109 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--GGCCS----CCCSEEEE
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--hHcCc----CCCCEEEE
Confidence 4567999999999999998888876689999999999999887544210 011122221 11110 12566655
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcccccC-----CcccccccchhhhhhhhhcccccccccCC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKNEYDD-----EDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~~~~~-----~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
..++.++ ..++++++++|||||.+++.... .......... ....+..+.+++.++++++||+++.....
T Consensus 110 D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 110 DVSFISL-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp CCSSSCG-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred EEEhhhH-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 5555554 36999999999999999986411 0000000000 11122336678999999999998876544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.6e-11 Score=130.08 Aligned_cols=105 Identities=24% Similarity=0.248 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++...+. ..++++.+|+.++.... ++||+|++..+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~D~Ivs~~~ 114 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS--SCEEEEEECCC
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC--CcccEEEEeCc
Confidence 577999999999999998888776689999999 699999998876643 45789999998876442 68999999876
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+++.. ..+..++.++.++|||||.++..
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 555432 33778999999999999999743
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-11 Score=122.24 Aligned_cols=126 Identities=16% Similarity=0.044 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++..++. ..+++..+|..+..... ++||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~--~~~D~Ivia 97 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA--DNIDTITIC 97 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc--cccCEEEEe
Confidence 46789999999999999988888754 799999999999999999987754 45789999988765432 379999876
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
++.-. -...++....+.|+++|+|+++... ....++.++.+.||.++...
T Consensus 98 GmGg~----lI~~IL~~~~~~l~~~~~lIlqp~~-----------------~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 98 GMGGR----LIADILNNDIDKLQHVKTLVLQPNN-----------------REDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EECHH----HHHHHHHHTGGGGTTCCEEEEEESS-----------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CCchH----HHHHHHHHHHHHhCcCCEEEEECCC-----------------ChHHHHHHHHHCCCEEEEEE
Confidence 65443 3778999999999999999988731 25588999999999998765
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-11 Score=123.34 Aligned_cols=126 Identities=12% Similarity=-0.010 Sum_probs=102.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++..++. ..+++..+|..+..... ++||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~--~~~D~Ivia 97 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK--DAIDTIVIA 97 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc--ccccEEEEe
Confidence 56789999999999999988887754 799999999999999999987754 45789999987755432 359999876
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+.- +-...++....+.|+++|+|+++... ....++.++.+.||.++...
T Consensus 98 gmGg----~lI~~IL~~~~~~L~~~~~lIlq~~~-----------------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 98 GMGG----TLIRTILEEGAAKLAGVTKLILQPNI-----------------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp EECH----HHHHHHHHHTGGGGTTCCEEEEEESS-----------------CHHHHHHHHHHHTEEEEEEE
T ss_pred CCch----HHHHHHHHHHHHHhCCCCEEEEEcCC-----------------ChHHHHHHHHHCCCEEEEEE
Confidence 5543 33778999999999999999998731 25588999999999987654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-11 Score=131.11 Aligned_cols=164 Identities=14% Similarity=0.009 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhcccC-CCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCC
Q psy8372 117 TSNQFLSSLYCQKKS-DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQ 193 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~-~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~ 193 (883)
....++..+...... ..++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++...... .++++++|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344455555432111 0256799999999999998777663 247999999999999999998866443 4789999976
Q ss_pred CC-C-CCcC--CCCccEEEEcccccccCh-------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc
Q psy8372 194 DF-K-PEDL--NIKYDVIWIQWVLMFILD-------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 256 (883)
Q Consensus 194 ~~-~-~~~~--~~~FDlVvs~~vL~hl~d-------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~ 256 (883)
+. . +... +++||+|+++..+++... +....++.+++++|||||.+.+................
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g 206 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLR 206 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBS
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceE
Confidence 52 2 1111 158999999876665430 01235678899999999988775432111000000000
Q ss_pred -----ccccccchhhhhhhhhcccccccc
Q psy8372 257 -----SSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 257 -----~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
........++.++++++||+.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 235 (254)
T 2h00_A 207 WYSCMLGKKCSLAPLKEELRIQGVPKVTY 235 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCChhHHHHHHHHHHHcCCCceEE
Confidence 011112357788899999987654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.6e-11 Score=133.68 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHh-------hcc--CCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEIL-------KDC--DKL 184 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~-------~~~--~~~ 184 (883)
......+++.+. ..++.+|||||||+|.++..++... ..+|+|||+|+.|++.|+++.. ..+ ...
T Consensus 159 ~~~i~~il~~l~-----l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r 233 (438)
T 3uwp_A 159 FDLVAQMIDEIK-----MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 233 (438)
T ss_dssp HHHHHHHHHHHC-----CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 334444444442 3578899999999999998877653 3369999999999999987542 122 256
Q ss_pred ccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 185 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
++++++|+.+.+....-..||+|+++.+++ . +++...|.+++++|||||+|++.+....
T Consensus 234 Vefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 234 YTLERGDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp EEEEECCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred eEEEECcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 799999998865321003699999987763 3 4578899999999999999999876543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.3e-11 Score=124.85 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++.. .+.+...|+.+++... ++||+|++..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~--~~fD~v~~~~ 156 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----QVTFCVASSHRLPFSD--TSMDAIIRIY 156 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTSCSBCT--TCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----CcEEEEcchhhCCCCC--CceeEEEEeC
Confidence 357799999999999999887763 2379999999999999988753 3478888888765433 6899999876
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+. ..++++.++|||||.+++.++..
T Consensus 157 ~~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 157 AP---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp CC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred Ch---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 53 24788999999999999998654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=121.72 Aligned_cols=126 Identities=14% Similarity=-0.011 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++..++.. ++++..+|..+..+.. ++||+|+..
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~--~~~D~Ivia 91 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET--DQVSVITIA 91 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC--cCCCEEEEc
Confidence 46789999999999999988887754 8999999999999999999887653 5789999986433222 269999876
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+-- +-...++..+...|+|+|++++.... .....+.++.+.||.++...
T Consensus 92 G~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~~-----------------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 92 GMGG----RLIARILEEGLGKLANVERLILQPNN-----------------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EECH----HHHHHHHHHTGGGCTTCCEEEEEESS-----------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CCCh----HHHHHHHHHHHHHhCCCCEEEEECCC-----------------CHHHHHHHHHHCCCEEEEEE
Confidence 5533 23678999999999999999997631 35688899999999998764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=120.03 Aligned_cols=102 Identities=19% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++....+..++.+..+|+.. .... ..+||+|++..+
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-GFPP-KAPYDVIIVTAG 167 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGG-GCCEEEEEECSB
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-CCCC-CCCccEEEECCc
Confidence 46779999999999999988877535699999999999999999877655557888888732 2221 246999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++++++ ++.++|||||.+++....
T Consensus 168 ~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 168 APKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred HHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 999853 578899999999998854
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-11 Score=122.02 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcC----CCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDL----NIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~----~~~FDl 206 (883)
++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...+.. .++++++|+.+..+... .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 56799999999999999887763 247999999999999999998776543 47889988865422110 158999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
|++.... .+...+++++.++|||||++++.+....+
T Consensus 144 v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~g 179 (225)
T 3tr6_A 144 IYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVLRRG 179 (225)
T ss_dssp EEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSGGG
T ss_pred EEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCCcCC
Confidence 9976532 33678999999999999999998866543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=127.32 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEcc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVG 191 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d 191 (883)
++......+...... ..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|++++...... .++++++|
T Consensus 136 dq~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D 211 (332)
T 2igt_A 136 EQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED 211 (332)
T ss_dssp GGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred HHHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc
Confidence 444444445554321 13567999999999999998888877 7999999999999999998876543 36889999
Q ss_pred CCCCCCCc--CCCCccEEEEccc----------ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 192 IQDFKPED--LNIKYDVIWIQWV----------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 192 ~~~~~~~~--~~~~FDlVvs~~v----------L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+.++.... ..++||+|++... +++. +++..++..+.++|||||.+++....
T Consensus 212 ~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 212 AMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 87654210 0258999999543 1222 34788999999999999998887644
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=127.01 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... .+|+|+|+|+.+++.+++++...+..++.++++|+.++... +++||+|++.
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~--~~~fD~Il~d 194 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL--NVEFDKILLD 194 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG--CCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc--cccCCEEEEe
Confidence 5678999999999999998887642 37999999999999999998877666678899998876542 3689999984
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
. ++++.++ + ....+++++.++|||||++++++...... .+......++
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------------Ene~~v~~~l 262 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------ENEFVIQWAL 262 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------------GTHHHHHHHH
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH------------HhHHHHHHHH
Confidence 3 3333221 1 12589999999999999999988533211 1223456677
Q ss_pred hhcccccccc
Q psy8372 271 SKANLKCVKS 280 (883)
Q Consensus 271 ~~aGf~vv~~ 280 (883)
++.||+.+..
T Consensus 263 ~~~~~~~~~~ 272 (315)
T 1ixk_A 263 DNFDVELLPL 272 (315)
T ss_dssp HHSSEEEECC
T ss_pred hcCCCEEecC
Confidence 7788877643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=122.39 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhh---ccCC-CccEEEccCCCCCC-----CcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILK---DCDK-LDKCYNVGIQDFKP-----EDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~---~~~~-~~~~~~~d~~~~~~-----~~~~~ 202 (883)
.++.+|||+|||+|.++..++..... +|+|+|+++.+++.|++++.. .... +++++++|+.++.+ ...++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 45679999999999999988888644 899999999999999999876 4332 46889999987621 01136
Q ss_pred CccEEEEccccccc----------------ChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFI----------------LDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl----------------~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+|+++..+... ....+..+++.+.++|||||.+++..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 89999998443321 11236789999999999999999875
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.1e-11 Score=121.72 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC---cCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE---DLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~---~~~~~FDlV 207 (883)
++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...+. .+++++.+|+.+..+. ...++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 567999999999999998877642 3799999999999999999876654 3478899988654221 001479999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
++..... ....+++++.++|||||++++.+....
T Consensus 138 ~~d~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 138 FIDADKQ-----NNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EECSCGG-----GHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEcCCcH-----HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9876532 356899999999999999998876554
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=129.29 Aligned_cols=105 Identities=21% Similarity=0.278 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..+++.|+.+|+|||.|+ |++.|++.+..++ ...++++.+++.++..+ ++||+|+|.++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp---e~~DvivsE~~ 158 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVSEWM 158 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEECCCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC---ccccEEEeecc
Confidence 5779999999999999877788888999999996 8899999888764 35679999999988654 48999999655
Q ss_pred ccccChH-HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDE-DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~de-d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+..+ .+..++....++|||||.++-..
T Consensus 159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~ 189 (376)
T 4hc4_A 159 GYGLLHESMLSSVLHARTKWLKEGGLLLPAS 189 (376)
T ss_dssp BTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred cccccccchhhhHHHHHHhhCCCCceECCcc
Confidence 4444332 37788899999999999987543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=120.44 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcC-CCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL-NIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~-~~~FDlVvs~ 210 (883)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...+. .++.+..+|+.+..+... +++||+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 567999999999999998887753 4799999999999999999876644 357888888876422110 2589999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
...+ +...+++.+.++|||||.+++.+..+.
T Consensus 134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 7653 266899999999999999999875443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=111.50 Aligned_cols=124 Identities=13% Similarity=0.014 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+. .++++++|+.+++ ++||+|+++..
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~D~v~~~~p 121 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----SRVDIVIMNPP 121 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----CCCSEEEECCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----CCCCEEEEcCC
Confidence 45779999999999999988887766899999999999999999876544 5688999988753 37999999998
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++........+++++.+++ ||. ++..... ..+.......+.+.||++..
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~-~~~~~~~--------------~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVV-YSIHLAK--------------PEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEE-EEEEECC--------------HHHHHHHHHHHHHTTEEEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcE-EEEEeCC--------------cCCHHHHHHHHHHCCCeEEE
Confidence 88775433467888999988 554 4333100 01234556777888887653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=118.77 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC------CeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCC----C
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFK----P 197 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~------~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~----~ 197 (883)
.++.+|||||||+|.++..++.... .+|+++|+|+.+++.|+++..... ..++.+...|+.+.. .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4678999999999999998887654 279999999999999999987654 456788999987743 2
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. .++||+|++..+++++. .++.++|||||++++...
T Consensus 159 ~--~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 E--LGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp H--HCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred c--CCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 2 25899999999998773 567899999999999875
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=113.73 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC--------CCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~ 202 (883)
.++.+|||+|||+|.++..++.. +. .+++|+|+|+ +++. ..+++...|+.+.+ .. ++
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~--~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVG--DS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHT--TC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCC--CC
Confidence 56789999999999999988877 44 4899999999 7532 34578888887753 22 25
Q ss_pred CccEEEEcccccccChHH---------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 203 KYDVIWIQWVLMFILDED---------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded---------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||+|+++.++++..... ...+++++.++|+|||.+++..+.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899999999888775421 168999999999999999998753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=119.49 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc--------cCCCccEEEccCCCCCC-CcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD--------CDKLDKCYNVGIQDFKP-EDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~--------~~~~~~~~~~d~~~~~~-~~~~~ 202 (883)
+++.+|||||||+|.++..++..+.. .|+|+|+|+.+++.|++++... ...++.++++|+.+..+ ....+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 35679999999999999988888765 7999999999999999987654 44567899999887322 11136
Q ss_pred CccEEEEcccccccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++|.|++...-.+.... ....++.++.++|+|||.|++.+
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 89999854321111000 00479999999999999999965
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.7e-11 Score=125.44 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCc----CCCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPED----LNIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~----~~~~FDl 206 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+.. ..++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999998877532 3799999999999999999887654 46789999987643210 0258999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
|++.... .+...+++++.++|||||++++.+..+.+
T Consensus 140 V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDADK-----TNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESCG-----GGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9987642 33667999999999999999998876554
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=128.54 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhcc-----------CCCccEEEccCCCCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC-----------DKLDKCYNVGIQDFKPED 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~-----------~~~~~~~~~d~~~~~~~~ 199 (883)
.++.+|||+|||+|.++..++.. +. .+|+|+|+++.+++.|++++.... ..++++..+|+.+.....
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 56789999999999999988876 55 489999999999999999887421 246788999988764221
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++||+|++... . +..++.++.++|||||.+++..+.
T Consensus 184 ~~~~fD~V~~~~~-----~--~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 184 KSLTFDAVALDML-----N--PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ----EEEEEECSS-----S--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCCCeeEEEECCC-----C--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1357999998542 2 234889999999999999988765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=129.43 Aligned_cols=110 Identities=16% Similarity=0.003 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHH-------HHHHhhcc--CCCccEEEccCCCCC--CCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQA-------KEEILKDC--DKLDKCYNVGIQDFK--PEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A-------~~~~~~~~--~~~~~~~~~d~~~~~--~~~~ 200 (883)
.++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.| ++++...+ ..+++++.+|..... ....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~ 320 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 320 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence 56789999999999999988875 444799999999999999 77776554 356777776543211 1001
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++||+|+++.++ +. +++...|+++.++|||||.+++.+...
T Consensus 321 ~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 321 IPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp GGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 2589999998776 33 347788999999999999999987543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-10 Score=116.43 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.+++++... .++.++.+|+.+... ...+++||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 356789999999999999988876 33 47999999999999999887654 567889999876321 11135899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+... .+ +....++.+++++|||||.+++..
T Consensus 149 ~~~~---~~-~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 149 EDVA---QP-TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ECCC---ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC---CH-hHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8655 11 224456999999999999999983
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=122.79 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=96.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. +. .+|+++|+|+.+++.|++++..... .++++...|+.+..+ +++||+|++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~V~~ 187 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---EKDVDALFL 187 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---CCSEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc---CCccCEEEE
Confidence 56789999999999999988887 43 4899999999999999999876543 456888888877522 258999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
. .++ +..++.++.++|+|||.+++.++.. .....+...++++||..+...
T Consensus 188 ~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~~---------------~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 188 D-----VPD--PWNYIDKCWEALKGGGRFATVCPTT---------------NQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp C-----CSC--GGGTHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHSSEEEEEEE
T ss_pred C-----CcC--HHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCceeEEE
Confidence 4 333 5578999999999999999988422 123456677778888766543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.7e-10 Score=112.03 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++.. .++++++|+.+++ ++||+|+++..
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----~~~D~v~~~~p 119 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKYDTWIMNPP 119 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCEEEEEECCC
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----CCeeEEEECCC
Confidence 3577999999999999998887766579999999999999999875 4588999988753 48999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++|..+.....+++++.+++ |+ +++..
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~--g~-~~~~~ 146 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS--MW-IYSIG 146 (200)
T ss_dssp C-------CHHHHHHHHHHE--EE-EEEEE
T ss_pred chhccCchhHHHHHHHHHhc--Cc-EEEEE
Confidence 99986533457888888888 44 44443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=119.48 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF------DKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~------~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~~~~~ 200 (883)
.++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.|++++.... ..++.+...|..+..+.
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-- 160 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-- 160 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG--
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc--
Confidence 56789999999999999887764 32 379999999999999999877543 34668888888763222
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++||+|++..+++|++ +++.++|||||++++....
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 25899999999999885 4688999999999998743
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.9e-10 Score=134.24 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=98.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~ 190 (883)
+++...+.++..+ .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++.. +++++++
T Consensus 525 ~d~r~~r~~l~~~-------~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~ 597 (703)
T 3v97_A 525 LDHRIARRMLGQM-------SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQA 597 (703)
T ss_dssp GGGHHHHHHHHHH-------CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEES
T ss_pred ccHHHHHHHHHHh-------cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec
Confidence 4666777777776 357899999999999999888877778999999999999999999877544 6789999
Q ss_pred cCCCCCCCcCCCCccEEEEccc-----------ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWV-----------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~v-----------L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++.... .++||+|++... +.+. .+...++..+.++|+|||+|+++...
T Consensus 598 D~~~~l~~~-~~~fD~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 598 DCLAWLREA-NEQFDLIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CHHHHHHHC-CCCEEEEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CHHHHHHhc-CCCccEEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 987743221 368999999653 2233 45788999999999999999988753
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-10 Score=116.70 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCCCCcCCCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~FD 205 (883)
.++.+|||+|||+|..+..++.. +. .+|+++|+|+.+++.|+++..... ..++.+...|+...... .++||
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD 153 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--EAPYD 153 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--GCCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc--CCCcC
Confidence 56789999999999999988776 33 379999999999999999877542 34578888888754332 36899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|++..+++++. .++.++|||||++++....
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 999999988774 4678999999999998753
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=116.72 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...+. ..++++.+|+.+..+.. ++ ||+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-RD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-CS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-CC-CCEEEEc
Confidence 467999999999999998876633 3799999999999999998876533 34688888887643222 35 9999987
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.. . .+...+++++.++|||||++++.+..+.
T Consensus 134 ~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 134 CD---V--FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp TT---T--SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred CC---h--hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 43 2 2367899999999999999998775443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=122.14 Aligned_cols=104 Identities=20% Similarity=0.133 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++..++..++.++.+|+.++ +. .++||+|++..
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~~~~D~Vi~d~ 194 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--KDVADRVIMGY 194 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--TTCEEEEEECC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--cCCceEEEECC
Confidence 5678999999999999998888753 37999999999999999999877666678999999887 43 36899999987
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.. ....++.++.++|+|||.+++.+...
T Consensus 195 p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 54 24568999999999999999988543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-10 Score=118.78 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE------------ 198 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~------------ 198 (883)
++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...+.. .+.+..+|+.+..+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 567999999999999998888753 48999999999999999998765443 367888887553110
Q ss_pred -cC-C-CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 199 -DL-N-IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 199 -~~-~-~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.. + ++||+|++..... +...+++++.++|||||++++.+..+.
T Consensus 140 ~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 00 1 5899999986533 356789999999999999999875543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=128.75 Aligned_cols=126 Identities=16% Similarity=0.110 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~ 190 (883)
.+....+.++.... .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..++.. +++++++
T Consensus 197 ~~~~~~~~~~~~~~------~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~ 270 (385)
T 2b78_A 197 LDQRQVRNELINGS------AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM 270 (385)
T ss_dssp GGGHHHHHHHHHTT------TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES
T ss_pred CcHHHHHHHHHHHh------cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45566666666552 357799999999999999888777768999999999999999999877554 6789999
Q ss_pred cCCCCCCC--cCCCCccEEEEcccc-----cccCh--HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPE--DLNIKYDVIWIQWVL-----MFILD--EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~--~~~~~FDlVvs~~vL-----~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++.+. ..+.+||+|++.... .+..+ +.+..++..+.++|+|||.+++....
T Consensus 271 D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 271 DVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98764321 012489999985433 12221 34667889999999999999998854
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-10 Score=119.71 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhc-c--CCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-C--DKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~-~--~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|+++.... + ..++++...|+.+.... +++||+|
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~--~~~~D~v 175 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--DGSVDRA 175 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--TTCEEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC--CCceeEE
Confidence 56789999999999999988875 3 347999999999999999998765 3 45678889998876433 3689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++. +++ +..++.++.++|+|||++++..+.
T Consensus 176 ~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 176 VLD-----MLA--PWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEE-----SSC--GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 983 333 457899999999999999998853
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-10 Score=119.47 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCc-----CCCCcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPED-----LNIKYD 205 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~-----~~~~FD 205 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+.. ..++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 567999999999999998887643 3799999999999999999876544 45788888886642210 035899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+|++.... .+...+++.+.++|||||++++.+..+.
T Consensus 159 ~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 194 (247)
T 1sui_A 159 FIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_dssp EEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTGG
T ss_pred EEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCcC
Confidence 99987542 2367899999999999999998875544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=8e-10 Score=123.03 Aligned_cols=109 Identities=17% Similarity=0.030 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ . ..|+|+|+|+.|++.|++++...+...+++.+.|+.+++... +.||+|+++
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~--~~~D~Ii~n 279 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF--PEVDRILAN 279 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC--CCCSEEEEC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc--CCCCEEEEC
Confidence 567899999999999999888865 2 369999999999999999998776557799999999876544 469999997
Q ss_pred ccccccCh------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILD------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~d------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.....-.. +.+..+++++.++|||||.+++.++
T Consensus 280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 65432111 1247899999999999999999874
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=111.07 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-----------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----------- 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~----------- 198 (883)
.++.+|||+|||+|.++..++.... .+|+|+|+|+.+ ....+.++++|+.+....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence 4678999999999999998887754 479999999831 123467888988775400
Q ss_pred ------------cCCCCccEEEEcccccccCh--HH-------HHHHHHHHHHHhccCcEEEEEec
Q psy8372 199 ------------DLNIKYDVIWIQWVLMFILD--ED-------IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 199 ------------~~~~~FDlVvs~~vL~hl~d--ed-------~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++||+|++..++++... .+ ...++++++++|||||.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 11358999999988776421 11 12488999999999999998763
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-10 Score=123.01 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=83.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
..+|||||||+|.++..+++.... +|++||+++.|++.|++++......+++++.+|+.++.....+++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 349999999999999988885333 7999999999999999988654445678899998765322113689999996543
Q ss_pred cccChHH--HHHHHHHHHHHhccCcEEEEEec
Q psy8372 214 MFILDED--IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 214 ~hl~ded--~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+...... ...+++.++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221111 15799999999999999998774
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=116.79 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcC----CCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL----NIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~----~~~FD 205 (883)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+... .++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 356799999999999999887653 23799999999999999999876543 467888888755321100 15899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+|++.... .....+++++.++|+|||.+++.+..+.
T Consensus 148 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 183 (229)
T 2avd_A 148 VAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVLWR 183 (229)
T ss_dssp EEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence 99996542 2366899999999999999999876544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=113.83 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++...... .++++...|+.+.... +++||+|++.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~- 165 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVD- 165 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEEC-
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEEC-
Confidence 46789999999999999988887 45799999999999999999876543 5568888888775412 2589999983
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.++ +..+++++.++|+|||.+++..+
T Consensus 166 ----~~~--~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 166 ----VRE--PWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ----SSC--GGGGHHHHHHHBCTTCEEEEEES
T ss_pred ----CcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 333 55789999999999999999885
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=124.04 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-C-CccEEEcc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-K-LDKCYNVG 191 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~-~~~~~~~d 191 (883)
++.....++..+ .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..++. . +++++++|
T Consensus 207 ~~~~~~~~l~~~-------~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D 279 (396)
T 3c0k_A 207 DQRDSRLATRRY-------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD 279 (396)
T ss_dssp GGHHHHHHHHHH-------CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred CHHHHHHHHHHh-------hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC
Confidence 344445556555 35789999999999999988887766899999999999999999887655 4 67899999
Q ss_pred CCCCCCCc--CCCCccEEEEcccc---------cccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 192 IQDFKPED--LNIKYDVIWIQWVL---------MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 192 ~~~~~~~~--~~~~FDlVvs~~vL---------~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+.++.... .+.+||+|++.... .+. +....++.++.++|+|||.++++++.
T Consensus 280 ~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 280 VFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 87753310 02589999997532 222 34778999999999999999998854
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=120.98 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+| |+|.++..++..+. .+|+|+|+|+.|++.|++++...+..+++++.+|+.+..+...+++||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 99999998888776 4899999999999999999887655467899999988322212358999999887
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEE-EEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGII-IIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~l-vi~~ 242 (883)
+++. ....+++++.++|||||.+ ++..
T Consensus 251 ~~~~---~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CchH---HHHHHHHHHHHHcccCCeEEEEEE
Confidence 6543 2578999999999999955 4444
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-10 Score=122.34 Aligned_cols=107 Identities=23% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-----------cCCCccEEEccCCCCCCCcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-----------CDKLDKCYNVGIQDFKPEDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 201 (883)
+.+.+|||||||+|.++..++..+..+|+++|+++.+++.|++++ .. ...+++++.+|+.++... +
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~ 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N 150 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c
Confidence 356799999999999999887774458999999999999999987 32 234578888887654221 3
Q ss_pred CCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 202 IKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++||+|++....+..+.+. ...++++++++|+|||.+++..
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5899999976543222122 2678999999999999999975
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=123.43 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
+++...+.++..+. .++.+|||+|||+|.++..++..|.. |+++|+|+.|++.|++++..++... .+.++|+
T Consensus 199 ~dqr~~r~~l~~~~------~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~ 270 (393)
T 4dmg_A 199 LDQRENRRLFEAMV------RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEA 270 (393)
T ss_dssp GGGHHHHHHHHTTC------CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCH
T ss_pred CCHHHHHHHHHHHh------cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccH
Confidence 45566666666552 35889999999999999988888776 9999999999999999988765442 5678887
Q ss_pred CCCCCCcCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++.... .+.||+|++......-.. .+...++..+.++|||||.|++.++.
T Consensus 271 ~~~l~~~-~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 271 LPTLRGL-EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp HHHHHTC-CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHh-cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 7653221 235999999754311110 24678999999999999999987754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-10 Score=122.53 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+.+.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++.....+++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 356799999999999999887653 348999999999999999987642 234678899998764221113589999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.....+.+.+. ...+++.++++|+|||.+++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9965422211111 3689999999999999999974
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.8e-10 Score=117.85 Aligned_cols=99 Identities=9% Similarity=0.094 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHh----CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC---CCCcCCCCcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYD 205 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~----g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~FD 205 (883)
++.+|||||||+|..+..++.. +. .+|+|+|+|+.|++.|+. ...+++++++|+.+. +... ..+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-----~~~~v~~~~gD~~~~~~l~~~~-~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLR-EMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGS-SSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-----cCCceEEEECcchhHHHHHhhc-cCCCC
Confidence 4579999999999999988776 33 379999999999998871 124678999998874 2211 23799
Q ss_pred EEEEcccccccChHHHHHHHHHHHH-HhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r-~LKPGG~lvi~~~ 243 (883)
+|++... |. ++..++.++++ +|||||++++.+.
T Consensus 155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998765 43 36789999997 9999999999874
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=115.12 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=88.8
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~ 195 (883)
..++..+... .++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. .+++++.+|+.+.
T Consensus 59 ~~~l~~l~~~----~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 134 (237)
T 3c3y_A 59 GQLMSFVLKL----VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA 134 (237)
T ss_dssp HHHHHHHHHH----TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHh----hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 3455554322 3567999999999999998887633 3899999999999999999876644 3578888887654
Q ss_pred CCCc-----CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 196 KPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 196 ~~~~-----~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.+.. ..++||+|++.... .+...+++.+.++|+|||++++.+..+.
T Consensus 135 l~~l~~~~~~~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 135 LDNLLQGQESEGSYDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp HHHHHHSTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred HHHHHhccCCCCCcCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence 2210 02589999986432 3467899999999999999998775543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-10 Score=119.88 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||||||+|.++..++... ..+|+++|+++.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-CCCceEE
Confidence 356799999999999999887654 348999999999999999987643 1356788888887643211 3689999
Q ss_pred EEcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++....++.+.+.+ ..+++.++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 99655443333223 689999999999999999885
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.9e-10 Score=116.07 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC--cCC--CCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE--DLN--IKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~--~~FDl 206 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. ..++++.+|+.+..+. ..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999998877643 3799999999999999998876543 3467888886543111 001 58999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
|++.... .+...++.++.++|+|||++++.+..+.+
T Consensus 152 V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~g 187 (232)
T 3cbg_A 152 IFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWHG 187 (232)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGGG
T ss_pred EEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcCC
Confidence 9987542 33678999999999999999998766543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.7e-10 Score=124.72 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=87.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..++.. +++++++|+.++.+. ...++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 67899999999999999888877668999999999999999998876554 678999998765321 013589999996
Q ss_pred ccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
........ .....++.++.++|+|||.+++.++.
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 53322111 34778999999999999999998854
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=119.92 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++...+. ..+++.++|+.+++... ++||+|+++
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~--~~fD~Ii~n 293 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV--DSVDFAISN 293 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC--SCEEEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc--CCcCEEEEC
Confidence 56789999999999999988887763 699999999999999999887654 46789999999876543 689999997
Q ss_pred ccccccC------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..+..-. .+-...+++.+.++| ||.+++... +...+...+.+.||+....
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~------------------~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT------------------EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES------------------CHHHHHHHHHHTTEEEEEE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC------------------CHHHHHHHHHHcCCEEEEE
Confidence 6643221 111367889999988 444444442 3556777888999987654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=115.01 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..++. ..++++.+|+.++... +.||.|+++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~---~~~D~Vi~~~ 200 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---NIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---SCEEEEEECC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc---cCCCEEEECC
Confidence 57899999999999999988888877899999999999999999987754 4578899999887643 5899999864
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
.. . ...++..+.++|||||.+.+.++..... ......+.+.......|+.+
T Consensus 201 p~--~----~~~~l~~a~~~lk~gG~ih~~~~~~e~~---------~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 201 VV--R----THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp CS--S----GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTCEE
T ss_pred CC--c----HHHHHHHHHHHcCCCCEEEEEeeecccc---------cchhHHHHHHHHHHHcCCcE
Confidence 31 1 2357788889999999998776543211 01112335556666666654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-10 Score=118.64 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--CCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~FDlVv 208 (883)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++++...+..++.++..|+.++.... ..++||+|+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 46789999999999999988874 33479999999999999999988776667788999887654310 025899999
Q ss_pred Eccc------cccc---Ch-------HHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 IQWV------LMFI---LD-------EDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 s~~v------L~hl---~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+... +++- .. +....++.++.++|||||++++++...
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8732 2210 00 124689999999999999999988543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.4e-10 Score=121.97 Aligned_cols=109 Identities=22% Similarity=0.275 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
+.+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++... ...+++++.+|+.++... .+++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-cCCCccE
Confidence 356799999999999999887753 348999999999999999987541 145678899988764221 1368999
Q ss_pred EEEcccccc---cChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMF---ILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~h---l~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|++....++ -+.+. ...++++++++|||||.+++..
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999876554 21111 2689999999999999999975
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=121.87 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI- 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs- 209 (883)
.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...+..++.++++|+.++.....+++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 5678999999999999998887532 4799999999999999999887766667889999887653221258999996
Q ss_pred -----cccccccChH-------H-------HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 210 -----QWVLMFILDE-------D-------IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 210 -----~~vL~hl~de-------d-------~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
..++++.++. + ...++.++.++|||||+++++++..
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3344444331 1 1578999999999999999988643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-10 Score=124.97 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCC------CChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC----cC
Q psy8372 133 PGKTRVLDVGAG------IGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----DL 200 (883)
Q Consensus 133 ~~~~rVLDVGCG------tG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~----~~ 200 (883)
.++.+||||||| +|..+..++... ..+|+|+|+|+.|. ....+++++++|+.+++.. ..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~ 285 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARR 285 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcc
Confidence 356799999999 777776676652 23799999999983 1234678999999886543 00
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++||+|+|.. .|++ .+...+|++++++|||||++++.+...
T Consensus 286 d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 286 YGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp HCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred cCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 26899999975 4666 458899999999999999999998764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=115.56 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCc---cEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKY---DVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~F---DlVvs 209 (883)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...+.. .++++++|+.+... ++| |+|++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~----~~f~~~D~Ivs 198 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK----EKFASIEMILS 198 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG----GGTTTCCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc----cccCCCCEEEE
Confidence 45699999999999999888872237999999999999999998876544 47899999876321 478 99999
Q ss_pred ccccc-----------ccChH------HHHHHHHHHH-HHhccCcEEEEEe
Q psy8372 210 QWVLM-----------FILDE------DIIKFLNLCK-QILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~-----------hl~de------d~~~~l~~~~-r~LKPGG~lvi~~ 242 (883)
+.... |-+.. +...+++++. +.|+|||.+++..
T Consensus 199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 73211 33221 1227899999 9999999999865
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.4e-10 Score=119.66 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+.+.+|||||||+|.++..++.. +..+|+++|+++.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-ENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-CSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCeeEE
Confidence 35679999999999999988766 3458999999999999999987531 2356788999987643221 3689999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++....++.+... ...+++.++++|||||.+++..
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9966543222111 1479999999999999999975
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=119.21 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+.+.+|||||||+|.++..++... ..+|+++|+++.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-QDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-SSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-CCCceEE
Confidence 356799999999999999887764 348999999999999999987641 2456788888876542221 3689999
Q ss_pred EEcccccccChH--HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~de--d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++....+..+.. ....++++++++|+|||.+++..
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 996654322211 12578999999999999999976
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=120.76 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-CCCceEE
Confidence 346799999999999999887653 348999999999999999987641 1356788999876542111 3589999
Q ss_pred EEcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++...-+.-+.+.. ..++++++++|||||.+++..
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 98653221111222 689999999999999999976
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=118.53 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhh----ccCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.+|||||||+|.++..++.. +..+|+++|+|+.+++.|++++.. ....+++++.+|+.++.... +++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCceEEE
Confidence 4579999999999999988776 345899999999999999998753 12456788999876542211 36899999
Q ss_pred EcccccccCh-H--HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILD-E--DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~d-e--d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+...-+++.. . ....++++++++|||||.+++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643221211 1 12589999999999999999975
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.5e-10 Score=120.97 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++... .+++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCceEEE
Confidence 45799999999999999887653 348999999999999999987642 135678888887664221 136899999
Q ss_pred EcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+...-+..+.+.+ ..+++.++++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9664322222222 689999999999999999876
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=117.11 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC------CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~------~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.++.+|||+|||+|.++..++.... .+++|+|+++.+++.|+.++...+. .+.+.++|.....+ .++||+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~---~~~fD~ 204 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL---VDPVDV 204 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC---CCCEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc---cCCccE
Confidence 3567999999999999987776542 4699999999999999998775544 45788888766432 358999
Q ss_pred EEEcccccccChHHH----------------HHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 207 IWIQWVLMFILDEDI----------------IKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 207 Vvs~~vL~hl~ded~----------------~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
|+++..+.+++.++. ..+++.+.+.|||||++++..+.. . +.. .....+++.+
T Consensus 205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~--~---~~~------~~~~~ir~~l 273 (344)
T 2f8l_A 205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA--M---FGT------SDFAKVDKFI 273 (344)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG--G---GGS------TTHHHHHHHH
T ss_pred EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch--h---cCC------chHHHHHHHH
Confidence 999998877654322 268999999999999999988542 1 111 1235677777
Q ss_pred hhcccc
Q psy8372 271 SKANLK 276 (883)
Q Consensus 271 ~~aGf~ 276 (883)
.+.|+.
T Consensus 274 ~~~~~~ 279 (344)
T 2f8l_A 274 KKNGHI 279 (344)
T ss_dssp HHHEEE
T ss_pred HhCCeE
Confidence 777763
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=118.14 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh-c-cCCCccEE--EccCCCCCCCcCCCCccEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-D-CDKLDKCY--NVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~-~-~~~~~~~~--~~d~~~~~~~~~~~~FDlV 207 (883)
..++.+|||+|||+|.++..++.. .+|+|+|+|+ |+..|+++... . ...++.++ ++|+.+++ +++||+|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~fD~V 152 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----PFQADTV 152 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----CCCCSEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----CCCcCEE
Confidence 356789999999999999877766 4699999998 64433221110 0 01145788 88888764 2589999
Q ss_pred EEcccccccChH---HH--HHHHHHHHHHhccCc--EEEEEec
Q psy8372 208 WIQWVLMFILDE---DI--IKFLNLCKQILNKNG--IIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~de---d~--~~~l~~~~r~LKPGG--~lvi~~~ 243 (883)
+|..+ ++.... .. ..++..+.++||||| .+++..+
T Consensus 153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 99877 443221 11 137899999999999 9998764
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=114.76 Aligned_cols=135 Identities=8% Similarity=0.038 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++..+|||+|||+|-++..++...+. +|+++|+++.|++.+++++...+.. .++...|...-.+ +++||+|++.-
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p---~~~~DvaL~lk 206 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRL---DEPADVTLLLK 206 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCC---CSCCSEEEETT
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCC---CCCcchHHHHH
Confidence 44679999999999999877666444 8999999999999999998876544 4677777665443 35899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc-ccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED-SSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++||+.++.....+ ++...|+|+|.++-.+.-. +.... +........|.+.+.+.|..+-
T Consensus 207 ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ks------l~Grs~gm~~~Y~~~~e~~~~~~g~~~~ 267 (281)
T 3lcv_B 207 TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKS------LGQRSKGMFQNYSQSFESQARERSCRIQ 267 (281)
T ss_dssp CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchh------hcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence 99999765555566 9999999999888776311 11111 1112234577788877887443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=117.23 Aligned_cols=104 Identities=20% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh-c-cCCCccEE--EccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-D-CDKLDKCY--NVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~-~-~~~~~~~~--~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+|||+|||+|.++..++.. .+|+|+|+|+ |+..+++.... . ...++.++ ++|+.+++ +++||+|+
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~fD~V~ 145 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP----VERTDVIM 145 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC----CCCCSEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC----CCCCcEEE
Confidence 56789999999999999877666 5699999998 54333221100 0 01145778 88888764 25899999
Q ss_pred EcccccccChH---HH--HHHHHHHHHHhccCc--EEEEEecc
Q psy8372 209 IQWVLMFILDE---DI--IKFLNLCKQILNKNG--IIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl~de---d~--~~~l~~~~r~LKPGG--~lvi~~~~ 244 (883)
|..+ ++.... .. ..++..+.++||||| .+++..+.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9877 544321 11 137899999999999 99987743
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-09 Score=108.38 Aligned_cols=103 Identities=14% Similarity=-0.005 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++ +...|+|+|+++.|++.+++++...+ ....+...|...-++. ++||+|++.-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~---~~~DvvLllk~ 177 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPA---EAGDLALIFKL 177 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCC---CBCSEEEEESC
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCC---CCcchHHHHHH
Confidence 457799999999999998666 44489999999999999999976544 3447788887765544 48999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+.+.+....+ ++...|+++|.++-..
T Consensus 178 lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 178 LPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9999665445555 8888999997776655
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=120.52 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--CCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..++..+++++++|+.++.+.. .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 5679999999999999988877 5579999999999999999988776555789999987754310 035899999965
Q ss_pred cccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
....... +....++..+.++|+|||.+++.++.
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3221110 34678999999999999999998854
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-09 Score=105.38 Aligned_cols=100 Identities=22% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C---------CeEEEEeCCHHHHHHHHHHHhhccCCCccEE-EccCCCCCCC---
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F---------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGIQDFKPE--- 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~---------~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~-~~d~~~~~~~--- 198 (883)
.++.+|||+|||+|.++..++... . .+|+|+|+|+.+ ....+.++ .+|+.+....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence 567899999999999999888873 2 579999999842 12345677 7776553210
Q ss_pred ---cCCCCccEEEEcccccc----cChHH-----HHHHHHHHHHHhccCcEEEEEec
Q psy8372 199 ---DLNIKYDVIWIQWVLMF----ILDED-----IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 199 ---~~~~~FDlVvs~~vL~h----l~ded-----~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++||+|+|..+++. ..+.. ...+++++.++|||||.+++.++
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 01248999999665443 22210 14789999999999999999874
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-09 Score=112.70 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGI 192 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~ 192 (883)
+......++..+. ..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+++++++|+
T Consensus 13 d~~i~~~i~~~~~-----~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~ 86 (285)
T 1zq9_A 13 NPLIINSIIDKAA-----LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 86 (285)
T ss_dssp CHHHHHHHHHHTC-----CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred CHHHHHHHHHhcC-----CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence 4455555555542 24678999999999999998888865 699999999999999998764432 4568899999
Q ss_pred CCCCCCcCCCCccEEEEcccccc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
.+.+. .+||+|+++...+.
T Consensus 87 ~~~~~----~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 87 LKTDL----PFFDTCVANLPYQI 105 (285)
T ss_dssp TTSCC----CCCSEEEEECCGGG
T ss_pred ecccc----hhhcEEEEecCccc
Confidence 87643 26999999765443
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-09 Score=119.04 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ- 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~- 210 (883)
++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...+..++.+++.|+.++... .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-VPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-STTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-ccccCCEEEECC
Confidence 678999999999999998887632 37999999999999999998877666678888988775431 13589999983
Q ss_pred -----ccccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 -----WVLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 -----~vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++.+-++ + ....+|.++.++|||||+|+++++..
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 22332221 1 13578999999999999999988654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-09 Score=114.31 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+.+.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++... ...+++++.+|..++. ++||+|+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~fD~Ii 144 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KKYDLIF 144 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hhCCEEE
Confidence 345799999999999999888775 78999999999999999876431 2345678888887754 4899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.. .+ +..+++.++++|||||.+++..
T Consensus 145 ~d~-----~d--p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 145 CLQ-----EP--DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ESS-----CC--CHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECC-----CC--hHHHHHHHHHhcCCCcEEEEEc
Confidence 863 23 3459999999999999999864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.5e-09 Score=104.40 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-----CC----CC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-----LN----IK 203 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~----~~ 203 (883)
.++.+|||+|||+|.++..++.. ...|+|+|+++.. ....+.++++|+.+..... .. ++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 56889999999999999977776 4479999999742 2245689999988753210 01 38
Q ss_pred ccEEEEccccccc----Ch-----HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWVLMFI----LD-----EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl----~d-----ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
||+|+|....... .+ +....++..+.++|||||.|++..+
T Consensus 92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9999997543211 11 1245788999999999999998874
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-08 Score=112.86 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++..++.. ++++++|+.++.+ .+||+|++...
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~----~~fD~Vv~dPP 362 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV----KGFDTVIVDPP 362 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC----TTCSEEEECCC
T ss_pred CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc----cCCCEEEEcCC
Confidence 467899999999999999877764 47999999999999999998876555 7899999988643 27999999765
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+. ..+++.+. .|+|||.++++.
T Consensus 363 r~g~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 363 RAGLH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TTCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred ccchH----HHHHHHHH-hcCCCcEEEEEC
Confidence 43332 13455554 599999999986
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-09 Score=121.11 Aligned_cols=135 Identities=16% Similarity=0.054 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++... ...|+++|+|+.+++.+++++...+..++.++..|+.++... .+++||+|++.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~-~~~~FD~Il~D 182 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH-FSGFFDRIVVD 182 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH-HTTCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh-ccccCCEEEEC
Confidence 568899999999999999888762 237999999999999999999887766778888887765421 13689999984
Q ss_pred c------cccccCh--------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 211 W------VLMFILD--------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 211 ~------vL~hl~d--------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
. ++.+-++ .....++..+.++|||||+|+.++++.... .+......++
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e------------Ene~vv~~~l 250 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE------------ENEEIISWLV 250 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG------------GTHHHHHHHH
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc------------cCHHHHHHHH
Confidence 3 2222111 112378999999999999999988643211 1234566777
Q ss_pred hhcccccccc
Q psy8372 271 SKANLKCVKS 280 (883)
Q Consensus 271 ~~aGf~vv~~ 280 (883)
++.+|+++..
T Consensus 251 ~~~~~~l~~~ 260 (456)
T 3m4x_A 251 ENYPVTIEEI 260 (456)
T ss_dssp HHSSEEEECC
T ss_pred HhCCCEEEec
Confidence 7777776654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-09 Score=121.42 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...+.. +.++++|+.++... .+++||+|++.
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~-~~~~FD~Il~D 177 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA-FGTYFHRVLLD 177 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH-HCSCEEEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh-ccccCCEEEEC
Confidence 5688999999999999998887643 37999999999999999999877666 78888887765421 13689999963
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++.+-++ + ....++..+.++|||||+|+.++++.
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 2 2222221 1 12679999999999999999988643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=113.18 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.|++++..++. .+++++++|+.++. ++||+|++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~dp 266 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIMNL 266 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEECC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEECC
Confidence 4678999999999999987 55 566899999999999999999887754 46789999998765 4899999964
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.- . ...++..+.++|+|||.+++.++..
T Consensus 267 P~--~----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 267 PK--F----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp TT--T----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred cH--h----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 31 1 2268899999999999999987543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=110.73 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......++..+. ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.......+++
T Consensus 20 ~Gq~fl~~~~i~~~i~~~~~-----~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~ 93 (299)
T 2h1r_A 20 QGQHLLKNPGILDKIIYAAK-----IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLE 93 (299)
T ss_dssp ---CEECCHHHHHHHHHHHC-----CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred cccceecCHHHHHHHHHhcC-----CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceE
Confidence 33333335555556665552 2467899999999999999877764 46999999999999999988655445678
Q ss_pred EEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
++.+|+.+++. .+||+|+++...+
T Consensus 94 ~~~~D~~~~~~----~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 94 VYEGDAIKTVF----PKFDVCTANIPYK 117 (299)
T ss_dssp C----CCSSCC----CCCSEEEEECCGG
T ss_pred EEECchhhCCc----ccCCEEEEcCCcc
Confidence 89999887643 3799999976544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-08 Score=116.07 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ- 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~- 210 (883)
.++.+|||+|||+|..+..++..+. ..|+++|+|+.+++.+++++...+.. +.+++.|+.++.....+++||+|++.
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchhhcccCCCCEEEEeC
Confidence 5678999999999999998888765 38999999999999999998766543 57888888776421112589999963
Q ss_pred -----ccccccChH-------H-------HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 -----WVLMFILDE-------D-------IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 -----~vL~hl~de-------d-------~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++++.++. + ...++.++.++|||||++++++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 344444331 1 1588999999999999999998543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-08 Score=110.85 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......++..+.... ...++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++..++..+++++++|+.+
T Consensus 268 ~~~~e~l~~~~~~~l-~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 268 AGVNQKMVARALEWL-DVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhh-cCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 334444544443222 2245679999999999999977766 45799999999999999999987766678999999987
Q ss_pred CCCC--cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 195 FKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 195 ~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.... ...++||+|+++..-... ..+++.+. .++|++.++++.... +...-...+.+
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyvsc~p~----------------tlard~~~l~~ 403 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYVSCNPA----------------TLARDSEALLK 403 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEEESCHH----------------HHHHHHHHHHH
T ss_pred HhhhhhhhcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEEECChH----------------HHHhhHHHHHH
Confidence 4322 113589999997543322 13444444 378999888876211 12222355667
Q ss_pred cccccccccCCCCCc
Q psy8372 273 ANLKCVKSEKGEFSP 287 (883)
Q Consensus 273 aGf~vv~~~~~~~~P 287 (883)
.|+++.....-..+|
T Consensus 404 ~Gy~~~~~~~~d~Fp 418 (433)
T 1uwv_A 404 AGYTIARLAMLDMFP 418 (433)
T ss_dssp TTCEEEEEEEECCST
T ss_pred CCcEEEEEEEeccCC
Confidence 799888766666665
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-09 Score=114.57 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeC----CHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ----SSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~----S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. .+|+|+|+ ++.+++.+. ........+.+++. |+.+++ .++||+|
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~----~~~fD~V 152 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP----PERCDTL 152 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC----CCCCSEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC----cCCCCEE
Confidence 56789999999999999877766 46999999 565442211 01111234677777 777653 2489999
Q ss_pred EEccccc---ccChHH-HHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLM---FILDED-IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~---hl~ded-~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|..+++ +..+.. ...+|..+.++|||||.|++..+
T Consensus 153 ~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 153 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9987653 222211 12578999999999999998664
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-08 Score=105.68 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceec--------cCCCCceeeEe--cCHHHHHHHHHccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVP--------THEPNKFYSLV--QSPQQLKQLLMVGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~--------~~~~~~~~~L~--~Spql~kq~l~~~~~~-- 417 (883)
-+.+.+.+|++| ...||.|+.+|.+...... .+-.++.+ .+..+....|+ +||.+..- |..+-.
T Consensus 109 ~~~~~~~Ir~if-~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~--l~~~~~pi 185 (327)
T 3pco_A 109 VTRTIDRIESFF-GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRT--MKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHH-HTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHH--HTTCCSSC
T ss_pred HHHHHHHHHHHH-HHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHH--HHhCCCCe
Confidence 456778899999 5899999999998542111 01001110 00001222354 67765433 333333
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCY 464 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~ 464 (883)
|+|++|+|||.+ .+.+|.|+|+|+|..+.. .++.++..++|.+++.
T Consensus 186 rifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~ 233 (327)
T 3pco_A 186 RIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRN 233 (327)
T ss_dssp CBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred eEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 899999999998 678888999999876653 2345555444444443
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.4e-08 Score=104.16 Aligned_cols=117 Identities=16% Similarity=0.020 Sum_probs=82.2
Q ss_pred CCCCCeEEEEcCCC------ChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccE-EEccCCCCCCCcCCC
Q psy8372 132 DPGKTRVLDVGAGI------GRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVGIQDFKPEDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt------G~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~ 202 (883)
..++.+|||+|||+ |. ..++.... .+|+|+|+|+. + ..+++ +++|+.+.... +
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~---~ 122 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA---N 122 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS---S
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc---C
Confidence 46788999999954 65 32444332 37999999987 1 24688 99999876543 5
Q ss_pred CccEEEEcccccc--------cC-hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 203 KYDVIWIQWVLMF--------IL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 203 ~FDlVvs~~vL~h--------l~-ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
+||+|+++...+. .. .+....++++++++|||||.|++..+... ...++..++++.
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~---------------~~~~l~~~l~~~ 187 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS---------------WNADLYKLMGHF 187 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS---------------CCHHHHHHHTTE
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC---------------CHHHHHHHHHHc
Confidence 8999999754321 10 12256899999999999999999874221 234778888999
Q ss_pred cccccccc
Q psy8372 274 NLKCVKSE 281 (883)
Q Consensus 274 Gf~vv~~~ 281 (883)
||..+...
T Consensus 188 GF~~v~~~ 195 (290)
T 2xyq_A 188 SWWTAFVT 195 (290)
T ss_dssp EEEEEEEE
T ss_pred CCcEEEEE
Confidence 98765443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-08 Score=102.95 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++... ..+++++++|+.+++... ...| .|+++..
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-~~~~-~vv~nlP 103 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-NQSY-KIFGNIP 103 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-SCCC-EEEEECC
T ss_pred CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-CCCe-EEEEeCC
Confidence 467899999999999999888887 5699999999999999998763 246789999998876542 1345 4555543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-08 Score=111.66 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-------------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN------------- 201 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~------------- 201 (883)
+.+|||+|||+|.++..++. +..+|+|+|+|+.+++.|++++..++..+++++.+|+.++.+....
T Consensus 214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 57899999999999986655 5567999999999999999999877666788999988765321000
Q ss_pred -CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 202 -IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 202 -~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+||+|++...-. .+..++.++|+++|.++....... .. ..++..+. .|+++...
T Consensus 293 ~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc~p~-----------t~---ard~~~l~--~~y~~~~~ 348 (369)
T 3bt7_A 293 SYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISCNPE-----------TL---CKNLETLS--QTHKVERL 348 (369)
T ss_dssp GCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEESCHH-----------HH---HHHHHHHH--HHEEEEEE
T ss_pred cCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEECCHH-----------HH---HHHHHHHh--hCcEEEEE
Confidence 2799999864322 233456777889998888764321 11 12333333 26877766
Q ss_pred cCCCCCc
Q psy8372 281 EKGEFSP 287 (883)
Q Consensus 281 ~~~~~~P 287 (883)
..-..||
T Consensus 349 ~~~D~FP 355 (369)
T 3bt7_A 349 ALFDQFP 355 (369)
T ss_dssp EEECCST
T ss_pred EeeccCC
Confidence 6666665
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.2e-08 Score=111.22 Aligned_cols=108 Identities=12% Similarity=0.014 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--------------CCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccCCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--------------FDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGIQDFK 196 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--------------~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~~~~~ 196 (883)
.++.+|||.|||+|.++..++... ...++|+|+++.+++.|+.++...+.. ...+.++|.....
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 456799999999999988776531 236999999999999999987755443 4578889887654
Q ss_pred CCcCCCCccEEEEcccccccChH---------------HHHHHHHHHHHHhccCcEEEEEec
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDE---------------DIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~de---------------d~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.. ++||+|+++..+.+.... ....+++.+.+.|||||++++..+
T Consensus 250 ~~---~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 250 PS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc---CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 43 389999999877654321 124789999999999999998875
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-08 Score=109.19 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++.. ...+++|+|+++.+++.| ..+.++++|+.++.+. ++||+|+++.
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~---~~fD~Ii~NP 106 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG---EAFDLILGNP 106 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS---SCEEEEEECC
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCcc---CCCCEEEECc
Confidence 4569999999999999888765 234799999999998877 2457889998876532 5899999974
Q ss_pred cccc----------cChHH-----------------HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccch
Q psy8372 212 VLMF----------ILDED-----------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 264 (883)
Q Consensus 212 vL~h----------l~ded-----------------~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~ 264 (883)
.... +.++. ...+++.+.++|+|||.+++..+..- + ......
T Consensus 107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~-----l------~~~~~~ 175 (421)
T 2ih2_A 107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW-----L------VLEDFA 175 (421)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG-----G------TCGGGH
T ss_pred CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHH-----h------cCccHH
Confidence 3321 22211 12679999999999999999885320 0 011244
Q ss_pred hhhhhhhhccc
Q psy8372 265 QFCLLFSKANL 275 (883)
Q Consensus 265 ~~~~l~~~aGf 275 (883)
.+++.+.+.|+
T Consensus 176 ~lr~~l~~~~~ 186 (421)
T 2ih2_A 176 LLREFLAREGK 186 (421)
T ss_dssp HHHHHHHHHSE
T ss_pred HHHHHHHhcCC
Confidence 67777777776
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-09 Score=110.69 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.. ...+++++++|+
T Consensus 13 ~~~~~~~~i~~~~~-----~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~ 84 (245)
T 1yub_A 13 TSEKVLNQIIKQLN-----LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDI 84 (245)
T ss_dssp CCTTTHHHHHHHCC-----CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCC
T ss_pred CCHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCCceEEEECCh
Confidence 34444555555542 2467799999999999999888887 569999999999999987765 234568888998
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHH----------HHH----HHHHHHhccCcEEEEEe
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDII----------KFL----NLCKQILNKNGIIIIKD 242 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~----------~~l----~~~~r~LKPGG~lvi~~ 242 (883)
.+++... +++| .|+++... +....... ..+ +.+.++|+|||.+.+..
T Consensus 85 ~~~~~~~-~~~f-~vv~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 85 LQFQFPN-KQRY-KIVGNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TTTTCCC-SSEE-EEEEECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred hhcCccc-CCCc-EEEEeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8876432 2578 66665322 11111111 233 66889999999877765
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-08 Score=104.76 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceecc--CCC------CceeeEecC--HHHHHHHHHccC---
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVPT--HEP------NKFYSLVQS--PQQLKQLLMVGS--- 415 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~~--~~~------~~~~~L~~S--pql~kq~l~~~~--- 415 (883)
-.+++.+.+|++| ...||.||++|.+.....+ .+..+.... +.. .....|++| |.+ ++ +++.+
T Consensus 54 ~~~~~~~~iR~~l-~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~l-l~-~l~~N~~~ 130 (294)
T 2rhq_A 54 PLTRTVEEIEDLF-LGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQ-AR-TMEKRNGQ 130 (294)
T ss_dssp HHHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHH-HH-HHHHTTTC
T ss_pred HHHHHHHHHHHHH-HHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHH-HH-HHHhcCCC
Confidence 4567899999999 5899999999998542100 011111100 000 122356544 544 44 34555
Q ss_pred -CCcEEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHHHh
Q psy8372 416 -VDRYFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCYCL 466 (883)
Q Consensus 416 -~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~i~ 466 (883)
--|+||||+|||+++.+..|.|||+||++.+++ .|+.+++..+|.++..++
T Consensus 131 ~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp SCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 459999999999987666677999999999999 679999999999998774
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=103.55 Aligned_cols=108 Identities=14% Similarity=0.011 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSKFIEQA 173 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---------------------------------------~~V~gvD~S~~~le~A 173 (883)
.++.+|||+|||+|.++..++..+. ..|+|+|+++.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999988876532 2599999999999999
Q ss_pred HHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccccc-ccC-hHHHHHHHHHHHHHhcc--CcEEEEEec
Q psy8372 174 KEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FIL-DEDIIKFLNLCKQILNK--NGIIIIKDN 243 (883)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~-ded~~~~l~~~~r~LKP--GG~lvi~~~ 243 (883)
++++...+.. .+++.+.|+.++.+. ++||+|+++.... .+. .+++..+.+.+.+.||+ ||.+++.+.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~~---~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKSE---DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCCS---CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChhhcCcC---CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 9998876543 578999999987653 4899999987653 222 24567788888888887 888888773
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=99.96 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++. ...+++++++|+
T Consensus 34 ~d~~i~~~Iv~~l~-----~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~ 105 (295)
T 3gru_A 34 IDKNFVNKAVESAN-----LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDA 105 (295)
T ss_dssp CCHHHHHHHHHHTT-----CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCT
T ss_pred CCHHHHHHHHHhcC-----CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhc--cCCCeEEEECch
Confidence 34555555655552 2467899999999999999888874 469999999999999999886 234678999999
Q ss_pred CCCCCCcCCCCccEEEEccccc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
.++.... .+||+|+++...+
T Consensus 106 l~~~~~~--~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 106 LKVDLNK--LDFNKVVANLPYQ 125 (295)
T ss_dssp TTSCGGG--SCCSEEEEECCGG
T ss_pred hhCCccc--CCccEEEEeCccc
Confidence 9876544 4799999885543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=103.19 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSKFIEQA 173 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---------------------------------------~~V~gvD~S~~~le~A 173 (883)
.++.+|||.+||+|.++..++..+. .+|+|+|+|+.|++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 4677999999999999887776533 2499999999999999
Q ss_pred HHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccccc-ccCh-HHHHHHHHHHHHHhcc--CcEEEEEec
Q psy8372 174 KEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FILD-EDIIKFLNLCKQILNK--NGIIIIKDN 243 (883)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~d-ed~~~~l~~~~r~LKP--GG~lvi~~~ 243 (883)
++++...+.. .+.+.+.|+.++... ++||+|+++.... .+.+ +++..+.+.+.+.||+ ||.+++.+.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~~---~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQTE---DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCCC---CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHcCCCCceEEEECChHhCCCC---CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999877543 578999999987653 4899999986542 2221 3466677778888876 998888773
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=104.87 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=28.1
Q ss_pred cEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
|+|+||+|||+|..+.+|+|||+|+|..++
T Consensus 349 riFeiGrVFR~d~~DatHlpeFhQlegl~~ 378 (508)
T 3l4g_A 349 KYFSIDRVFRNETLDATHLAEFHQIEGVVA 378 (508)
T ss_dssp EEEEEEEEECCSCCCSSSCSEEEEEEEEEE
T ss_pred eEEEEccEEecCCCCCCcCCeEEEEEEEEE
Confidence 899999999999999999999999998765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-07 Score=100.38 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSKFIEQA 173 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---------------------------------------~~V~gvD~S~~~le~A 173 (883)
.++..|||.+||+|.++..++..+. ..|+|+|+|+.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999987775433 2499999999999999
Q ss_pred HHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccccc-ccC-hHHHHHHHHHHHHHhcc--CcEEEEEec
Q psy8372 174 KEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FIL-DEDIIKFLNLCKQILNK--NGIIIIKDN 243 (883)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~-ded~~~~l~~~~r~LKP--GG~lvi~~~ 243 (883)
++++...+.. .+++.+.|+.++... ++||+|+++.-.. .+. .+++..+.+.+.+.||+ ||.+++.+.
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~~---~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKTN---KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCCC---CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChHHCCcc---CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 9999877543 478999999987653 4899999986543 222 24577788888888887 999888873
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=97.15 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......+++.+.. .++.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++... ..+++
T Consensus 7 ~GQnFL~d~~i~~~iv~~~~~-----~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~~v~ 78 (255)
T 3tqs_A 7 FGQHFLHDSFVLQKIVSAIHP-----QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QKNIT 78 (255)
T ss_dssp --CCEECCHHHHHHHHHHHCC-----CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CTTEE
T ss_pred CCcccccCHHHHHHHHHhcCC-----CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CCCcE
Confidence 333334456666666666632 467899999999999999888776 5799999999999999998864 34678
Q ss_pred EEEccCCCCCCCcC--CCCccEEEEcc
Q psy8372 187 CYNVGIQDFKPEDL--NIKYDVIWIQW 211 (883)
Q Consensus 187 ~~~~d~~~~~~~~~--~~~FDlVvs~~ 211 (883)
++++|+.+++.... +++|| |+++.
T Consensus 79 ~i~~D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 79 IYQNDALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp EEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred EEEcchHhCCHHHhccCCCeE-EEecC
Confidence 99999998765332 24688 66654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=103.04 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc---------------cCCCccEEEccCCCCCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD---------------CDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~---------------~~~~~~~~~~d~~~~~~ 197 (883)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++..+ +...++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4679999999999999988887 4447999999999999999998876 44446888888866532
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.. .+.||+|++.. . .. ...++..+.+.|||||.++++.
T Consensus 127 ~~-~~~fD~I~lDP-~-~~----~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ER-HRYFHFIDLDP-F-GS----PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HS-TTCEEEEEECC-S-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc-cCCCCEEEeCC-C-CC----HHHHHHHHHHhcCCCCEEEEEe
Confidence 11 24799999754 2 11 2468899999999999888765
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=94.17 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=75.3
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......+++.+.. .++ +|||||||+|.++..++..+. +|+|+|+++.|++.++++... .+++
T Consensus 25 ~GQnfL~d~~i~~~Iv~~~~~-----~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---~~v~ 94 (271)
T 3fut_A 25 FGQNFLVSEAHLRRIVEAARP-----FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---LPVR 94 (271)
T ss_dssp SSCCEECCHHHHHHHHHHHCC-----CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---SSEE
T ss_pred CCccccCCHHHHHHHHHhcCC-----CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---CCEE
Confidence 444444566677777777632 456 999999999999998888874 599999999999999998762 4678
Q ss_pred EEEccCCCCCCCcCCCCccEEEEcccccccCh
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
++++|+.+++.... ..+|.|+++.. .++..
T Consensus 95 vi~~D~l~~~~~~~-~~~~~iv~NlP-y~iss 124 (271)
T 3fut_A 95 LVFQDALLYPWEEV-PQGSLLVANLP-YHIAT 124 (271)
T ss_dssp EEESCGGGSCGGGS-CTTEEEEEEEC-SSCCH
T ss_pred EEECChhhCChhhc-cCccEEEecCc-ccccH
Confidence 99999988765431 26888888765 34443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-07 Score=104.75 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCC--ccEEEccCCCCCC-CcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKL--DKCYNVGIQDFKP-EDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~--~~~~~~d~~~~~~-~~~~~~FDlVv 208 (883)
++.+|||++||+|.++..++.. |..+|+++|+++.+++.+++++..++... ++++.+|+.++.. .. .+.||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-GFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-SSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-CCCCcEEE
Confidence 5679999999999999988885 34589999999999999999998776543 7888888866432 21 35799999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.. ... +..++..+.+.|+|||.++++.
T Consensus 131 lDP--~g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--FGT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 987 222 2358889999999999888876
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.9e-07 Score=96.67 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs 209 (883)
.++.+|||+|||+|..+..++.. +...|+++|+++.+++.+++++...+..++.++..|+.++..... .++||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 56889999999999999988875 234799999999999999999987766678899999887654321 147999997
Q ss_pred cc------cccccCh---------HH-------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QW------VLMFILD---------ED-------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~------vL~hl~d---------ed-------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.. ++..-++ ++ ...+|..+.++|+ ||+|+.++..
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 32 2222111 01 2356777888786 9999888754
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-06 Score=95.47 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH--------h----C---CC-eEEEEeCCHHHHHHHHHHHhhccC------------CCc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLA--------K----H---FD-KIDLLEQSSKFIEQAKEEILKDCD------------KLD 185 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~--------~----g---~~-~V~gvD~S~~~le~A~~~~~~~~~------------~~~ 185 (883)
...+|+|+|||+|.++..++. . + +. +|...|+....-...=+.+..... ...
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 468999999999999986632 1 1 23 688888776664443333332100 011
Q ss_pred cEEEccCCCCC-CCcCCCCccEEEEcccccccCh------------------------------------HHHHHHHHHH
Q psy8372 186 KCYNVGIQDFK-PEDLNIKYDVIWIQWVLMFILD------------------------------------EDIIKFLNLC 228 (883)
Q Consensus 186 ~~~~~d~~~~~-~~~~~~~FDlVvs~~vL~hl~d------------------------------------ed~~~~l~~~ 228 (883)
-|..+....+- ...++++||+|+|+.+|||+++ +|...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333321 1122479999999999999862 1466789999
Q ss_pred HHHhccCcEEEEEecccC
Q psy8372 229 KQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 229 ~r~LKPGG~lvi~~~~~~ 246 (883)
++.|+|||+++++.....
T Consensus 212 a~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHHEEEEEEEEEEEEECC
T ss_pred HHHhCCCCEEEEEEecCC
Confidence 999999999999886543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-07 Score=98.56 Aligned_cols=82 Identities=18% Similarity=0.084 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCH-------HHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCC--CC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSS-------KFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLN--IK 203 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~-------~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~--~~ 203 (883)
++.+|||+|||+|..+..++..+. +|+|+|+|+ .+++.|+++...... +.++++++|+.++.+...+ ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 567999999999999998888765 599999999 999999887655433 3478999998775321111 47
Q ss_pred ccEEEEccccccc
Q psy8372 204 YDVIWIQWVLMFI 216 (883)
Q Consensus 204 FDlVvs~~vL~hl 216 (883)
||+|++..++++-
T Consensus 162 fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 162 PDIVYLDPMYPER 174 (258)
T ss_dssp CSEEEECCCC---
T ss_pred ccEEEECCCCCCc
Confidence 9999998777653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=91.14 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......+++.+. ..++.+|||||||+|.++..++..+..+|+|+|+++.|++.++++ . ..+++
T Consensus 9 ~GQnfl~d~~i~~~iv~~~~-----~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~~~v~ 79 (249)
T 3ftd_A 9 FGQHLLVSEGVLKKIAEELN-----IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---DERLE 79 (249)
T ss_dssp CCSSCEECHHHHHHHHHHTT-----CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---CTTEE
T ss_pred ccccccCCHHHHHHHHHhcC-----CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---CCCeE
Confidence 44444445566666666553 246789999999999999988877556899999999999999877 2 34568
Q ss_pred EEEccCCCCCCCcCCCCccEEEEcccccccC
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ 217 (883)
++++|+.+++.....+.| .|+++ .-.++.
T Consensus 80 ~i~~D~~~~~~~~~~~~~-~vv~N-lPy~i~ 108 (249)
T 3ftd_A 80 VINEDASKFPFCSLGKEL-KVVGN-LPYNVA 108 (249)
T ss_dssp EECSCTTTCCGGGSCSSE-EEEEE-CCTTTH
T ss_pred EEEcchhhCChhHccCCc-EEEEE-Cchhcc
Confidence 899999987654422223 44444 444553
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.2e-06 Score=91.22 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCChHHHHHHHh-----------------CCC-eEEEEeCC-----------HHHHHHHHHHHhhccCCCc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK-----------------HFD-KIDLLEQS-----------SKFIEQAKEEILKDCDKLD 185 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~-----------------g~~-~V~gvD~S-----------~~~le~A~~~~~~~~~~~~ 185 (883)
..+|+|+||++|.++..++.. .+. +|...|+. +.+.+.+++.... .. ..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-~~-~~ 130 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-KI-GS 130 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-CT-TS
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-CC-Cc
Confidence 579999999999999877654 122 67888987 5555544332110 01 12
Q ss_pred cEEEccCCCCCC-CcCCCCccEEEEcccccccChH-------------------------------------HHHHHHHH
Q psy8372 186 KCYNVGIQDFKP-EDLNIKYDVIWIQWVLMFILDE-------------------------------------DIIKFLNL 227 (883)
Q Consensus 186 ~~~~~d~~~~~~-~~~~~~FDlVvs~~vL~hl~de-------------------------------------d~~~~l~~ 227 (883)
-|+.+....+-. ..+.+++|+|+++.+|||+++. |...+|+.
T Consensus 131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444321 1224799999999999998541 12234777
Q ss_pred HHHHhccCcEEEEEecccCC
Q psy8372 228 CKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 228 ~~r~LKPGG~lvi~~~~~~~ 247 (883)
.++.|+|||++++......+
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCT
T ss_pred HHHHhccCCeEEEEEecCCC
Confidence 79999999999999876544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-06 Score=98.59 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCChHHH---HHHHhCCC--eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISK---YLLAKHFD--KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~---~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
....|||||||+|-+.. .+++.+.. +|++||.|+ |...|++....+ -...++++.+|+.++..++ +.|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPE---KVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPE---KADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSS---CEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCc---ccCEE
Confidence 34579999999999844 33444433 689999997 566677766555 3456799999999987654 89999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
+|-++=..+-.|.....+....|.|||||.++
T Consensus 433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99765544444555578888899999999864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=91.75 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=64.2
Q ss_pred cCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCe---EEEEeCCHHHHHHHHHHHhhccC
Q psy8372 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCD 182 (883)
Q Consensus 106 ~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~---V~gvD~S~~~le~A~~~~~~~~~ 182 (883)
.|++..-.+......+++.+.. .++.+|||||||+|.++..++..+..+ |+|+|+|+.|++.|+++. .
T Consensus 19 ~~GQ~fL~d~~i~~~iv~~~~~-----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~ 89 (279)
T 3uzu_A 19 RFGQNFLVDHGVIDAIVAAIRP-----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----G 89 (279)
T ss_dssp CCSCCEECCHHHHHHHHHHHCC-----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----G
T ss_pred cCCccccCCHHHHHHHHHhcCC-----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----C
Confidence 3444444566666666666632 467899999999999999888775432 999999999999999983 2
Q ss_pred CCccEEEccCCCCCCCc
Q psy8372 183 KLDKCYNVGIQDFKPED 199 (883)
Q Consensus 183 ~~~~~~~~d~~~~~~~~ 199 (883)
.+++++++|+.+++...
T Consensus 90 ~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 90 ELLELHAGDALTFDFGS 106 (279)
T ss_dssp GGEEEEESCGGGCCGGG
T ss_pred CCcEEEECChhcCChhH
Confidence 35689999998876543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=101.28 Aligned_cols=110 Identities=12% Similarity=-0.106 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHHHHhhccCCC-----ccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-------------------FDKIDLLEQSSKFIEQAKEEILKDCDKL-----DKCY 188 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-------------------~~~V~gvD~S~~~le~A~~~~~~~~~~~-----~~~~ 188 (883)
.++.+|||.|||+|.++..++... ...++|+|+++.+++.|+.++...+... ..+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 456799999999999987766531 1269999999999999999876554443 5678
Q ss_pred EccCCCCCCCcCCCCccEEEEcccccccCh------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILD------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 189 ~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++|........ .++||+|+++..+..... .....++..+.+.|||||++++..+
T Consensus 248 ~gDtL~~~~~~-~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGEN-LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHT-SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCCccccccc-ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 88876533211 258999999876654321 1124789999999999999998875
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-06 Score=97.04 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEecC-----HHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQS-----PQQLKQ 409 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~S-----pql~kq 409 (883)
.-.-.+++.+|.+.+|+.| .+.||.||.||+|.... ..|. .-|.+.. ..+..++|+.. ..+++.
T Consensus 63 lP~g~~~~~~i~~~ir~~~-~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d-~~~~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQ-NRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIAD-RHKRELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEEC-TTCCEEEECSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEe-CCCCeEEECCCChHHHHHHHHH
Confidence 3456789999999999999 68999999999997642 1121 1244432 23677888753 134444
Q ss_pred HHHcc-CC-CcEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHH
Q psy8372 410 LLMVG-SV-DRYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEEL 461 (883)
Q Consensus 410 ~l~~~-~~-~rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~l 461 (883)
.+... .+ -|+|||++|||+| ..+.. |..||+|.|+|....+..++-..+..+
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 32111 12 2999999999999 66566 889999999999887766654444444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=9e-06 Score=98.33 Aligned_cols=110 Identities=10% Similarity=-0.043 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-------------------------------------------CeEEEEeCCHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-------------------------------------------DKIDLLEQSSKF 169 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-------------------------------------------~~V~gvD~S~~~ 169 (883)
.++.+|||.+||+|.++..++..+. ..++|+|+++.|
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 4677999999999999887765421 269999999999
Q ss_pred HHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcccccc-c-ChHHHHHHHHHHH---HHhccCcEEEEEe
Q psy8372 170 IEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF-I-LDEDIIKFLNLCK---QILNKNGIIIIKD 242 (883)
Q Consensus 170 le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h-l-~ded~~~~l~~~~---r~LKPGG~lvi~~ 242 (883)
++.|++++...+.. .+.+.+.|+.++......++||+|+++.-... + ..+++..+.+.+. +.+.|||.+++.+
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999877554 36899999988754432248999999865431 1 1233444444444 4455899999987
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.5e-06 Score=91.33 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh------------C---CC--eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK------------H---FD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQD 194 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~------------g---~~--~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~ 194 (883)
+...+|+|+||++|.++..++.. + .. +|...|+..+....+-+.+..... +..-|+.+....
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 44578999999999888755433 1 22 788899998888877776553210 112345544444
Q ss_pred CC-CCcCCCCccEEEEcccccccCh-------------------------------HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 195 FK-PEDLNIKYDVIWIQWVLMFILD-------------------------------EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 195 ~~-~~~~~~~FDlVvs~~vL~hl~d-------------------------------ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+- ...+.+++|+|+|+.+|||+++ +|...+|+..++.|+|||++++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 31 1122479999999999999854 145667999999999999999988
Q ss_pred cccCC
Q psy8372 243 NVASG 247 (883)
Q Consensus 243 ~~~~~ 247 (883)
....+
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 65543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4.3e-06 Score=88.53 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...++.+|||+|||+|.++..++.. +...|.|+|++..+....... ......+..+..++...... +++||+|+|
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~--~~~g~~ii~~~~~~dv~~l~--~~~~DlVls 146 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV--QSLGWNIITFKDKTDIHRLE--PVKCDTLLC 146 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC--CBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc--CcCCCCeEEEeccceehhcC--CCCccEEEe
Confidence 3456779999999999999866655 444788999885431110000 00001223344444322222 368999999
Q ss_pred ccccc---ccCh-HHHHHHHHHHHHHhccC-cEEEEEecc
Q psy8372 210 QWVLM---FILD-EDIIKFLNLCKQILNKN-GIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~---hl~d-ed~~~~l~~~~r~LKPG-G~lvi~~~~ 244 (883)
..+.+ +..| .....++..+.++|+|| |.|++..+.
T Consensus 147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 87665 1111 11123578889999999 999997753
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=88.63 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C--CC------CccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P--GG------AREFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~--~g------a~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++..|.+.+|+.| .+.||.||.||++.... . +| ..-|.+.- ..|..+.|+ ..|++..-.+
T Consensus 33 P~~~~~~~~i~~~i~~~~-~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D-~~g~~l~LRpd~T~~~aR~~~ 110 (344)
T 1z7m_A 33 LNQVKSLRQIEGRLRKLF-SLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIK-HEGQSITLRYDFTLPLVRLYS 110 (344)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEEC-TTCCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEecCcccCcHHHHhhccCCccccccccEEEEEC-CCCCEEecCCCCcHHHHHHHH
Confidence 445678899999999999 68999999999996631 0 12 12254432 236777887 3343444332
Q ss_pred HccCC---CcEEEEeeceecCCCCCCCCcceecccccccCCCH
Q psy8372 412 MVGSV---DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR 451 (883)
Q Consensus 412 ~~~~~---~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~ 451 (883)
.... -|+|+|++|||+|.++..|..||+|+++|....+-
T Consensus 111 -~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 111 -QIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp -TCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH
T ss_pred -hcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC
Confidence 2222 39999999999999888899999999999988763
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.9e-06 Score=92.26 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cC-CCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DL-NIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~~FDlVv 208 (883)
.++.+|||+|||+|..+..++.... .+|+|+|.|+.|++.|++++...+ .+++++++|+.++... .. ..+||.|+
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGIL 103 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence 4678999999999999998888752 479999999999999999987654 5678999998775311 00 14799998
Q ss_pred Ecc
Q psy8372 209 IQW 211 (883)
Q Consensus 209 s~~ 211 (883)
+..
T Consensus 104 ~D~ 106 (301)
T 1m6y_A 104 MDL 106 (301)
T ss_dssp EEC
T ss_pred EcC
Confidence 855
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-06 Score=97.98 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|++++... +..+++++++|+.++.....+++||+|++..
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP 171 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP 171 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence 47899999999999998666554 47999999999999999998865 4456789999998753211124799999865
Q ss_pred c
Q psy8372 212 V 212 (883)
Q Consensus 212 v 212 (883)
.
T Consensus 172 P 172 (410)
T 3ll7_A 172 A 172 (410)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=84.68 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccE
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKC 187 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~ 187 (883)
+.....+.+....... .+...+||=||.|.|..+..+++.. ..+|+.||+++.+++.|++.+... ...+++.
T Consensus 65 De~~YhE~l~h~~l~~--~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v 142 (294)
T 3o4f_A 65 DEFIYHEMMTHVPLLA--HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKL 142 (294)
T ss_dssp THHHHHHHHHHHHHHH--SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEE
T ss_pred cHHHHHHHHHHHHHhh--CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEE
Confidence 4444555555543221 2456799999999999999887753 458999999999999999986532 3567789
Q ss_pred EEccCCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 188 ~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..|...+.... .++||+|+....=..-+... -..+++.++++|+|||+++...
T Consensus 143 ~~~Dg~~~l~~~-~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 143 VIDDGVNFVNQT-SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCTTTTTSCS-SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EechHHHHHhhc-cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 999998876543 57899999754211111100 1379999999999999999875
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=89.71 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC---CCC----ccceeccCCCCceeeEe--cCHHHHHHHHHc--
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP---GGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMV-- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~---~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~-- 413 (883)
-.-.+++..|.+.+|+.| ...||.||.||++....- +|. .-|.+.- ..|..+.|+ ..|++..-....
T Consensus 21 P~~~~~~~~i~~~l~~~~-~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D-~~g~~l~LRpd~T~~~aR~~~~~~~ 98 (400)
T 3od1_A 21 PEWYKTKKNICDQMTEEI-NLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLD-QQGNTLVLRPDMTAPIARLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEEC-TTSCEEEECSCSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcCCccccceEEEEC-CCCCEEEECCCCHHHHHHHHHhhcc
Confidence 344678899999999999 689999999999965421 121 1254432 236777886 334343332211
Q ss_pred -cCCC-cEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 414 -GSVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
.... |.|+|++|||.|.++..|..||+|+++|..+.+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC
Confidence 1222 999999999999998889999999999998876
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.02 E-value=7.2e-06 Score=86.87 Aligned_cols=93 Identities=10% Similarity=0.122 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCe--EEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~--V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
+......+++.+. ..++.+|||||||+|.++. + ..+ .+ |+|+|+++.|++.++++.... .+++++++|
T Consensus 6 d~~i~~~iv~~~~-----~~~~~~VLEIG~G~G~lt~-l-~~~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D 75 (252)
T 1qyr_A 6 DQFVIDSIVSAIN-----PQKGQAMVEIGPGLAALTE-P-VGE-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQD 75 (252)
T ss_dssp CHHHHHHHHHHHC-----CCTTCCEEEECCTTTTTHH-H-HHT-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSC
T ss_pred CHHHHHHHHHhcC-----CCCcCEEEEECCCCcHHHH-h-hhC-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECc
Confidence 3444555555552 2467799999999999998 5 444 45 999999999999999876532 356889999
Q ss_pred CCCCCCCcC---CCCccEEEEcccccccC
Q psy8372 192 IQDFKPEDL---NIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 192 ~~~~~~~~~---~~~FDlVvs~~vL~hl~ 217 (883)
+.+++.... ++..|.|+++.. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~vvsNlP-Y~i~ 103 (252)
T 1qyr_A 76 AMTFNFGELAEKMGQPLRVFGNLP-YNIS 103 (252)
T ss_dssp GGGCCHHHHHHHHTSCEEEEEECC-TTTH
T ss_pred hhhCCHHHhhcccCCceEEEECCC-CCcc
Confidence 988754321 012356666544 3453
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.3e-06 Score=98.07 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCChHHHHHHHh----C---------C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK----H---------F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-- 198 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~----g---------~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-- 198 (883)
+..|||||||+|-++...+.. + . .+|++||.|+.++..++.+..+.-...++++.+|+.++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 457999999999996433221 2 1 28999999998777666665544456689999999988641
Q ss_pred -cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 199 -DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 199 -~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
...++.|+|+|-++=.....+-...+|..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 00258999999776544444445668888899999999855
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=90.66 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC-CC-------ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG-GA-------REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~-ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++.+|.+.+|+-| ++.||.||.||++.... .+ |. .-|.+.-. .|..+.|+ ..|.+..-.+
T Consensus 15 P~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~ 92 (423)
T 1htt_A 15 PGETAIWQRIEGTLKNVL-GSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGI 92 (423)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHH
Confidence 345678999999999999 78999999999997642 11 32 22555332 36778887 3333443322
Q ss_pred Hcc---CC-CcEEEEeeceecCCCCCCCCcceecccccccCCCH
Q psy8372 412 MVG---SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR 451 (883)
Q Consensus 412 ~~~---~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~ 451 (883)
... .+ -|.|+|+++||+|.++..|..||+|+++|....+-
T Consensus 93 ~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 93 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp HHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCS
T ss_pred hcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCC
Confidence 111 22 39999999999999888899999999999988763
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=90.06 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC-CC-------ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG-GA-------REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~-ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++.+|.+.+|+-| .+.||.||.||++.... .+ |. .-|.+.- ..|..+.|+ ..|++..-.+
T Consensus 14 P~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D-~~g~~l~Lrpd~t~~~ar~~~ 91 (421)
T 1h4v_B 14 GKELRMHQRIVATARKVL-EAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQD-RGGRSLTLRPEGTAAMVRAYL 91 (421)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEecccccccHHHhhhccCCcccccccceEEEEC-CCCCEEeeCCcchHHHHHHHH
Confidence 344678899999999999 78999999999997642 11 32 1244432 236777786 3333443322
Q ss_pred Hc----cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCCH
Q psy8372 412 MV----GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR 451 (883)
Q Consensus 412 ~~----~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~ 451 (883)
.. ..+ -|.|+|+++||+|.++..|..||+|+++|....+-
T Consensus 92 ~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~ 136 (421)
T 1h4v_B 92 EHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSEN 136 (421)
T ss_pred hccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCC
Confidence 11 122 39999999999998888889999999999987663
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.8e-06 Score=94.16 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEecCHHH-HHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQSPQQ-LKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~Spql-~kq~l~~~ 414 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..|. .-|.++ ..+..++|+..... .-.+ ...
T Consensus 27 P~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d--~~~~~~~LrP~~~~~~~~~-~~~ 102 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQI-FNQ 102 (401)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEE--ETTEEEEECSCSHHHHHHH-HTS
T ss_pred chHHHHHHHHHHHHHHHH-HHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEe--cCCceEEEcCCCCHHHHHH-HHh
Confidence 445778999999999999 68999999999997742 1121 124422 23677889743332 2221 121
Q ss_pred ------CC-CcEEEEeeceecCCC--CCC--CCcceecccccccCCCHHHHHHH
Q psy8372 415 ------SV-DRYFQIARCYRDEST--RPD--RQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 415 ------~~-~rvf~I~~~FR~E~~--~~~--r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
.+ -|+||||+|||+|.+ ... |..||+|.|+|. |.+.+++...
T Consensus 103 ~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e 155 (401)
T 1evl_A 103 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDE 155 (401)
T ss_dssp SCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred hhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHH
Confidence 22 299999999999986 445 889999999996 5564444443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.1e-06 Score=88.28 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=68.5
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-------c-C-CCccEEEccCCCCCCCcCCCCccE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-------C-D-KLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-------~-~-~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+|||+|||+|..+..++..+.. |+++|.++.+.+.+++++... . . .+++++++|..++.... .++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-SSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-cccCCE
Confidence 79999999999999988888774 999999998877776654322 1 1 34688999987754322 247999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNG 236 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG 236 (883)
|++...+++-.. ..++++..++|++.+
T Consensus 168 V~lDP~y~~~~~---saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPHKQK---SALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCCCCC--------HHHHHHHHHS
T ss_pred EEEcCCCCCccc---chHHHHHHHHHHHhh
Confidence 999988866422 256777778887755
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=77.19 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCC--------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFK-------------- 196 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~-------------- 196 (883)
+..+|||+||| +.+..++.....+|+.+|.++...+.|++++...+ ..+++++.+++.+..
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 45699999985 56655554323489999999999999999998765 456788888876431
Q ss_pred C--------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 197 P--------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 197 ~--------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+ ....++||+|+...-. ....+..+.+.|+|||++++.+
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 0 0012689999997631 2356666789999999996544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.3e-05 Score=89.48 Aligned_cols=130 Identities=13% Similarity=0.037 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHhhccC--CCccEE
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCY 188 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g----~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~ 188 (883)
......++..++.......++.+|||.+||+|.++..++... ...++|+|+++.++..|+.++...+. ....+.
T Consensus 202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~ 281 (542)
T 3lkd_A 202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLH 281 (542)
T ss_dssp CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceE
Confidence 344445555554321112467799999999999988776652 33799999999999999998765544 344678
Q ss_pred EccCCCCC-CCcCCCCccEEEEcccccc-------------------cCh--HHHHHHHHHHHHHhc-cCcEEEEEecc
Q psy8372 189 NVGIQDFK-PEDLNIKYDVIWIQWVLMF-------------------ILD--EDIIKFLNLCKQILN-KNGIIIIKDNV 244 (883)
Q Consensus 189 ~~d~~~~~-~~~~~~~FDlVvs~~vL~h-------------------l~d--ed~~~~l~~~~r~LK-PGG~lvi~~~~ 244 (883)
++|..... +.....+||+|+++.-+.. ++. ..--.+++.+.+.|| |||++.+..+.
T Consensus 282 ~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 282 NADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp ESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 88876542 1122368999999754321 100 001258999999999 99999888753
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=8.7e-06 Score=92.50 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----C-CCC------ccceeccCCCCceeeEe--cCHHHH---H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----P-GGA------REFVVPTHEPNKFYSLV--QSPQQL---K 408 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~-~ga------~~f~v~~~~~~~~~~L~--~Spql~---k 408 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... . ||. .-|.+.- ..+..++|+ ..|.+. .
T Consensus 13 p~~~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D-~~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 13 PEDSKKWRYIENQLDELM-TFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKD-KGDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHCC-----------CCEEECH-HHHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEc-CCCCEEEeCCCChHHHHHHHH
Confidence 345678999999999999 68999999999997741 1 232 1233321 124567786 222232 2
Q ss_pred HHHHc--cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCCH----HHHHHHHHHHHH
Q psy8372 409 QLLMV--GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR----DDVMRLIEELLC 463 (883)
Q Consensus 409 q~l~~--~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~----~dvm~~~E~li~ 463 (883)
+.... ..+ -|+|+|++|||+|.++..|..||+|+|+|..+.+- .+++.++.++++
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~ 152 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQ 152 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHH
Confidence 22121 123 39999999999998888888999999999988762 344544444443
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=90.85 Aligned_cols=118 Identities=13% Similarity=0.192 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCC-------ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGA-------REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..|. .-|.+.-...|..+.|+ ..|.+..-..
T Consensus 43 P~~~~~~~~l~~~i~~~~-~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~ 121 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLL-RAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAI 121 (467)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHH
Confidence 345678999999999999 68999999999997642 1133 12544322216778887 3343433221
Q ss_pred H---ccCC-CcEEEEeeceecCCCCCCCCcceecccccccCCC--H--HHHHHHHHHHHH
Q psy8372 412 M---VGSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--R--DDVMRLIEELLC 463 (883)
Q Consensus 412 ~---~~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~--~dvm~~~E~li~ 463 (883)
. ...+ -|.|+|++|||+|.++..|..||+|+++|+...+ . .+++.++.++++
T Consensus 122 ~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~ 181 (467)
T 4e51_A 122 EHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWE 181 (467)
T ss_dssp HTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHH
T ss_pred HcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 1 1112 3999999999999998889999999999997765 2 344444444443
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=89.65 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC----ccceeccCCCCceeeEe--cCHHHHHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~ 414 (883)
-.-.+++.+|.+.+|+-| .+.||.||.||++.... . .|. .-|.+.-. .|..+.|+ ..|.+..-.+...
T Consensus 17 P~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~ 94 (434)
T 1wu7_A 17 PEDMDVEKFIFKTAEEAA-EAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRK 94 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEeeccccccHHHhhhccCCccccceEEEECC-CCCEEEeCCCChHHHHHHHHhcC
Confidence 445678999999999999 68999999999997742 1 222 12554322 36778886 3333444332111
Q ss_pred C--C-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 415 S--V-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 415 ~--~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
. + -|.|+|+++||+|.++..|..||+|+++|..+.+
T Consensus 95 ~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 95 DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD 133 (434)
T ss_dssp TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC
T ss_pred CCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCC
Confidence 1 2 2999999999999888889999999999998877
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.2e-05 Score=91.47 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC----CCcc-ceeccCCCCceeeEe-cCHHH----HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG----GARE-FVVPTHEPNKFYSLV-QSPQQ----LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~----ga~~-f~v~~~~~~~~~~L~-~Spql----~kq~ 410 (883)
..-.+++..|.+.+++.+ .+.||.||.||+|.... .| .+.. |.+. +..++|+ +|.+- |++.
T Consensus 169 p~ga~l~~~L~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~----~~~l~LrPt~e~~i~~~~~~~ 243 (425)
T 2dq3_A 169 GWGARLERALINFMLDLH-TKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE----RDNLYLIPTAEVPLTNLYREE 243 (425)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT----TTCCEECSSTHHHHHGGGTTE
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHHhcCCCCcChhhheEec----CCeEEEcCCCcHHHHHHHHhh
Confidence 556788999999999999 57999999999998752 11 1222 3332 4566786 44442 2222
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCCC-------CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRPD-------RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~~-------r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
++. ..+. |+|++++|||+|.+... |..||+|+|++. |.+.++..+..++++..
T Consensus 244 i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~ 305 (425)
T 2dq3_A 244 ILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKD 305 (425)
T ss_dssp EEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHH
Confidence 111 1222 99999999999986522 678999999977 54444455555555543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=91.16 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC----CeEEEEeCCHHHHHHH--HHHHhhc----cCCCccEEEccCCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQA--KEEILKD----CDKLDKCYNVGIQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~----~~V~gvD~S~~~le~A--~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~ 202 (883)
.++.+|||.|||+|.++..++.... .+++|+|+++.+++.| +.++..+ +.....+...|+.+.... ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-DFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-GGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-ccC
Confidence 3578999999999999987776542 2699999999999999 4444321 111123344444432211 135
Q ss_pred CccEEEEcccccc-cC-hH-------------------------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 203 KYDVIWIQWVLMF-IL-DE-------------------------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 203 ~FDlVvs~~vL~h-l~-de-------------------------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||+|+++.-.-. .. +. -...++..+.+.|+|||++++..+.
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 8999999876521 11 00 1335788999999999999998853
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.9e-05 Score=85.03 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC-----CccceeccCCCCceeeEe--cCHHHHHHHHH---c
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG-----AREFVVPTHEPNKFYSLV--QSPQQLKQLLM---V 413 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g-----a~~f~v~~~~~~~~~~L~--~Spql~kq~l~---~ 413 (883)
-.+++..|.+.+|+.| .+.||.||.||++.... .+| ..-|.+.- ..|..+.|+ ..|++..-... .
T Consensus 36 ~~~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D-~~g~~l~LRpd~T~~~aR~~~~~~~~ 113 (373)
T 3rac_A 36 FAKRRRAVETRLLSFV-EDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFD-GGGDAVALRPEMTPSIARMAAPRVAA 113 (373)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCC-CSSSCEEECSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-HHcCCeEEECCceeeHHHHhhcCCccchhceEEEEC-CCCCEEEECCcCHHHHHHHHHhcccc
Confidence 3567889999999999 68999999999996631 111 12243322 236777886 33334322211 1
Q ss_pred cC-CCcEEEEeeceecCCC------CCCCCcceecccccccCCC---H--HHHHHHHHHHHH
Q psy8372 414 GS-VDRYFQIARCYRDEST------RPDRQPEFTQLDIELSFTT---R--DDVMRLIEELLC 463 (883)
Q Consensus 414 ~~-~~rvf~I~~~FR~E~~------~~~r~~EFt~le~e~~~~~---~--~dvm~~~E~li~ 463 (883)
.. --|.|+|++|||+|.+ ...|..||+|+++|....+ . .+++.++-++++
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~ 175 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASA 175 (373)
T ss_dssp TCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHH
Confidence 12 2499999999999988 6778899999999997765 1 344444444443
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3e-05 Score=89.04 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc----cceeccCCCCceeeEe--cCHHHHHHHHHccC
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMVGS 415 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~~~ 415 (883)
.-.+++..|.+.+|+.| ...||.||.||++.... ..|.. -|.+.- ..|..+.|+ ..|++..-.+....
T Consensus 41 ~~~~~~~~i~~~i~~~~-~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D-~~g~~l~LRpd~T~~~aR~~~~~~~ 118 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATA-KTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFIT-KGGHRVALRPEMTPSLARLLLGKGR 118 (456)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEEC-SSSCEEEECSCSHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHHH-HHCCCEEEECCcEeehhhhccccccchhhceEEEEc-CCCCEEecCCcCHHHHHHHHHhcCc
Confidence 34568899999999999 68999999999997642 11321 244432 236777886 33444443322111
Q ss_pred ----CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 416 ----VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 416 ----~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
--|.|+|++|||.|.++..|..||+|+++|+.+.+ -.+++.++.++++.
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp TCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 13899999999999998889999999999998765 23455555444443
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.3e-05 Score=91.33 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe-cCHH----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV-QSPQ----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~-~Spq----l~kq~ 410 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..|. .-|.+.. ..+..++|+ .+-+ +|+..
T Consensus 44 P~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d-~~~~~~~LrP~~~~~~~~~~~~~ 121 (572)
T 2j3l_A 44 PLANRVLEKLKTIMREEF-EKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKD-RNDRDYILGPTHEETFTELIRDE 121 (572)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEEC-TTCCEEEECSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHHhcCCccccchheEEEec-CCCCeEEEccccHHHHHHHHHhh
Confidence 455789999999999999 68999999999997752 1121 1244432 235778886 2222 34443
Q ss_pred HHc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEEL 461 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~l 461 (883)
+.. ..+. |+|||++|||+|.+. .. |..||+|.|+|....+..++...++++
T Consensus 122 ~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 122 INSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 211 1233 999999999999884 33 779999999999888766665555554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.86 E-value=1e-05 Score=86.02 Aligned_cols=128 Identities=13% Similarity=-0.036 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-------CC------CeEEEEeCCH---HHHH-----------HHHHHHhhc------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-------HF------DKIDLLEQSS---KFIE-----------QAKEEILKD------ 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-------g~------~~V~gvD~S~---~~le-----------~A~~~~~~~------ 180 (883)
+..+|||+|||+|..+..++.. .+ -+++++|..+ .++. .|++.....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999988765543 33 2799999776 4444 455554321
Q ss_pred --------cCCCccEEEccCCCCCCCcCC---CCccEEEEcc-cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 181 --------CDKLDKCYNVGIQDFKPEDLN---IKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 181 --------~~~~~~~~~~d~~~~~~~~~~---~~FDlVvs~~-vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
...+++++.+|+.+..+.... ..||+|+... .-..-++--...+++.++++|+|||+|+..+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------ 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence 112346778887664322111 2799999853 2111111002479999999999999988422
Q ss_pred cccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
....++..+.++||.+...
T Consensus 214 -------------aa~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 214 -------------SAGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp -------------CBHHHHHHHHHHTEEEEEE
T ss_pred -------------CCHHHHHHHHHCCCEEEeC
Confidence 1236788899999997643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-05 Score=89.53 Aligned_cols=108 Identities=10% Similarity=-0.101 Sum_probs=75.3
Q ss_pred CeEEEEcCCCChHHHHHHHhC----------------CCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC
Q psy8372 136 TRVLDVGAGIGRISKYLLAKH----------------FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE 198 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g----------------~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~ 198 (883)
.+|||.+||+|.++..++... ...++|+|+++.+++.|+.++...+.. .+.+.++|....+..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 499999999999887664321 226999999999999999987655332 222356665543322
Q ss_pred cCCCCccEEEEcccccc-------------------------cChH--HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 199 DLNIKYDVIWIQWVLMF-------------------------ILDE--DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 199 ~~~~~FDlVvs~~vL~h-------------------------l~de--d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. ..+||+|+++.-+.. ++.. .--.+++.+.+.|||||++++..+.
T Consensus 326 ~-~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 326 P-DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp T-TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred c-cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 1 368999999765542 1110 0126899999999999999988753
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=83.80 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc--cCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV--GIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++.. +...|.|+|++..+...+... ......+..+.. |+..+. ++++|+|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~--~~~g~~ii~~~~~~dv~~l~----~~~~DvVL 161 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR--TTLGWNLIRFKDKTDVFNME----VIPGDTLL 161 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC--CBTTGGGEEEECSCCGGGSC----CCCCSEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc--ccCCCceEEeeCCcchhhcC----CCCcCEEE
Confidence 357779999999999999977654 444799999987642222110 000111122222 322221 36899999
Q ss_pred EcccccccCh---HH--HHHHHHHHHHHhccC--cEEEEEecc
Q psy8372 209 IQWVLMFILD---ED--IIKFLNLCKQILNKN--GIIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl~d---ed--~~~~l~~~~r~LKPG--G~lvi~~~~ 244 (883)
|..+.. ... ++ ...+|.-+.++|+|| |.|++..+.
T Consensus 162 SDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 162 CDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp ECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 987766 221 11 224577788999999 999998854
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=97.78 E-value=3.7e-05 Score=88.74 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-C---CCC-----c-cceeccCC---CCceeeEec-CHH----HH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-P---GGA-----R-EFVVPTHE---PNKFYSLVQ-SPQ----QL 407 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~---~ga-----~-~f~v~~~~---~~~~~~L~~-Spq----l~ 407 (883)
.-.+++..|.+.+|+.| .+.||.||.||+|.... - .|. . -|.+.... .+..++|+. +-+ +|
T Consensus 42 ~g~~l~~~I~~~~r~~~-~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 34678899999999999 68999999999998753 1 221 1 24443221 146788873 322 35
Q ss_pred HHHHHc-cCCC-cEEEEeeceecCCCCCC--CCcceecccccccCCCHHHHHHHHHHH
Q psy8372 408 KQLLMV-GSVD-RYFQIARCYRDESTRPD--RQPEFTQLDIELSFTTRDDVMRLIEEL 461 (883)
Q Consensus 408 kq~l~~-~~~~-rvf~I~~~FR~E~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~l 461 (883)
++.+.. ..+. |+|||++|||+|..... |..||+|.|++..|.+.++....+..+
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 554221 1233 99999999999965446 889999999999999877776666555
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.6e-05 Score=84.96 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC----CCCCC--c-cceeccCCCCceeeEec--CHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR----TPGGA--R-EFVVPTHEPNKFYSLVQ--SPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~----~~~ga--~-~f~v~~~~~~~~~~L~~--Spql~kq~l~~~~ 415 (883)
-.-.+++..|.+.+|+.| ...||.||.||+|... ...|. . -|.+.- ..|..+.|+. .+++..-.+ ...
T Consensus 25 P~~~~~~~~i~~~~~~~~-~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D-~~g~~l~LRPd~T~~~aR~~~-~~~ 101 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCF-KRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD-QGGELLSLRYDLTVPFARYLA-MNK 101 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTTSCC----CCCBBCC-CSSCCEEECSCSHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHCCCeEEECcccCcHHHhccccCcCcceeEEEEC-CCCCEEEeCCcCcHHHHHHHH-hcC
Confidence 455678999999999999 6899999999999653 11222 1 243322 2467788872 333443322 222
Q ss_pred C--CcEEEEeeceecCCCC--CCCCcceecccccccCC-C----HHHHHHHHHHHHHH
Q psy8372 416 V--DRYFQIARCYRDESTR--PDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCY 464 (883)
Q Consensus 416 ~--~rvf~I~~~FR~E~~~--~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~ 464 (883)
. -|.|+|+++||.|..+ ..|..||+|+++|..+. + -.+++.++-++++.
T Consensus 102 ~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 102 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 2 2899999999999774 35778999999999774 2 23455555544443
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.9e-05 Score=91.99 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCC-ceeeEecCH-HHHHHHHHc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPN-KFYSLVQSP-QQLKQLLMV 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~-~~~~L~~Sp-ql~kq~l~~ 413 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|. .-|.+.. ..+ ..++|+.-. +-+-.+...
T Consensus 268 P~g~~~~~~l~~~ir~~~-~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~ 345 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKE-VSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYAN 345 (645)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH-HHcCCEEEECCeeccHHHHhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHh
Confidence 455889999999999999 68999999999997752 1222 1133211 125 778887322 222222111
Q ss_pred c-----CCC-cEEEEeeceecCCCCC--C--CCcceecccccccCCCHHHHHH
Q psy8372 414 G-----SVD-RYFQIARCYRDESTRP--D--RQPEFTQLDIELSFTTRDDVMR 456 (883)
Q Consensus 414 ~-----~~~-rvf~I~~~FR~E~~~~--~--r~~EFt~le~e~~~~~~~dvm~ 456 (883)
. .+. |+||||+|||+|.++. . |..||||.|+|. |.+.+++.+
T Consensus 346 ~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d 397 (645)
T 1nyr_A 346 KPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKE 397 (645)
T ss_dssp SCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred hhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHH
Confidence 1 122 9999999999999863 3 779999999998 555444333
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=6.1e-05 Score=86.51 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHH-hcCCCeEEEcCCeeccCC---CCCC-----c-cceeccCC-CCceeeEec-CHHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFL-ATHRDFVEVETPTLFKRT---PGGA-----R-EFVVPTHE-PNKFYSLVQ-SPQQLKQLLM 412 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~-~~~~gF~EV~TP~l~~~~---~~ga-----~-~f~v~~~~-~~~~~~L~~-Spql~kq~l~ 412 (883)
-.-.+++..|.+.+|+.+ . +.||.||.||+|.... ..|. . -|.+.... .+..++|+. +-+-+-.+ .
T Consensus 61 P~g~~l~~~l~~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~-~ 138 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKF-KFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLI-F 138 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHH-H
T ss_pred ccHHHHHHHHHHHHHHHHHH-hcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHH-H
Confidence 455789999999999998 6 6899999999997642 1121 1 24443221 256788863 32222222 2
Q ss_pred ccC------CC-cEEEEeeceecCCCC--CC--CCcceecccccccCCCHHHHHHHHHHHH
Q psy8372 413 VGS------VD-RYFQIARCYRDESTR--PD--RQPEFTQLDIELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 413 ~~~------~~-rvf~I~~~FR~E~~~--~~--r~~EFt~le~e~~~~~~~dvm~~~E~li 462 (883)
... +. |+|++++|||+|... .. |..||+|.|++. |.+.+++.+.+++++
T Consensus 139 ~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i 198 (460)
T 3uh0_A 139 GKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSL 198 (460)
T ss_dssp TTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHH
T ss_pred HhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHH
Confidence 221 22 899999999999885 45 789999999997 555555555444433
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=5e-05 Score=87.31 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-----Cc-cceeccCC---CCceeeEe-cCHHH----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-----AR-EFVVPTHE---PNKFYSLV-QSPQQ---- 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-----a~-~f~v~~~~---~~~~~~L~-~Spql---- 406 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..| +. -|.+.... .+..++|+ .+-+.
T Consensus 35 P~g~~l~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~ 113 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLL-DESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYM 113 (459)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHH
Confidence 344678999999999999 68999999999997742 122 11 25444321 15678887 33332
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCC-CCC--CCccee-cccccccCCCHHHHHHHHHHHH
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDEST-RPD--RQPEFT-QLDIELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~-~~~--r~~EFt-~le~e~~~~~~~dvm~~~E~li 462 (883)
|++.+.. ..+. |+|||++|||+|.. ... |..||+ |.|.+..+.+.+++...+++++
T Consensus 114 ~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i 175 (459)
T 1nj8_A 114 MKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAI 175 (459)
T ss_dssp HHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHH
Confidence 3332111 1222 99999999999988 445 779999 9999999998777666544444
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=9.2e-05 Score=86.45 Aligned_cols=118 Identities=16% Similarity=0.261 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC----CCCCCc---cceeccCCCCceeeEec--CHHHHHHHHHcc
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR----TPGGAR---EFVVPTHEPNKFYSLVQ--SPQQLKQLLMVG 414 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~----~~~ga~---~f~v~~~~~~~~~~L~~--Spql~kq~l~~~ 414 (883)
+-.-.+++..|.+.+|+.| ...||.||.||++... ...|.. -|.+.- ..|..+.|+. .+.+..-.+ ..
T Consensus 77 lP~~~~~~~~ie~~i~~~~-~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D-~~g~~l~LRPd~T~~~aR~~~-~~ 153 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCF-KRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD-QGGELLSLRYDLTVPFARYLA-MN 153 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHHCC------CSCBBCC-TTSCCEEECSCSHHHHHHHHH-HT
T ss_pred CHHHHHHHHHHHHHHHHHH-HHCCCeEEECcccCcHHHhhcccCcCcceeEEEEC-CCCCEEEeCCcCcHHHHHHHH-hC
Confidence 3455788999999999999 6899999999999653 112221 133322 2467788872 233433222 22
Q ss_pred CC--CcEEEEeeceecCCCC--CCCCcceecccccccCC-C----HHHHHHHHHHHHHH
Q psy8372 415 SV--DRYFQIARCYRDESTR--PDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCY 464 (883)
Q Consensus 415 ~~--~rvf~I~~~FR~E~~~--~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~ 464 (883)
.. -|.|+||++||.|.++ ..|..||+|+++|+.+. + -.+++.++-++++.
T Consensus 154 ~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 154 KLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp TCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 22 2899999999999874 46779999999999874 2 23455555555444
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.2e-05 Score=87.22 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC--C--CCC------ccceeccCC---CCceeeEe-cCHH----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT--P--GGA------REFVVPTHE---PNKFYSLV-QSPQ----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--~--~ga------~~f~v~~~~---~~~~~~L~-~Spq----l 406 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... . .|. .-|.+.... .+..++|+ +|=+ +
T Consensus 52 P~G~~i~~~L~~~~~~~~-~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 52 PYGFFMENAIMRLCEEEY-AKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 344678899999999999 68999999999997643 1 221 124443221 14578886 3322 3
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCC-CCCC--CCcceecccccccCCCHHHHHHHHHHHH---HHHh-ccCCCCceeee
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDES-TRPD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCL-NIPTRTFSRIS 477 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~-~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~-~~~~~~f~rit 477 (883)
|++.+.. ..+. |+||+++|||+|. .... |..||+|.|.+....+.+++.+.+++++ ..++ +.+.-||...+
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~ 210 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLR 210 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEE
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeee
Confidence 4443211 1233 9999999999994 4444 7799999999997789888888777776 5666 66666665443
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=6.1e-05 Score=87.47 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CC-----C-ccceeccCC---CCceeeEe-cCHH----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GG-----A-REFVVPTHE---PNKFYSLV-QSPQ----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~g-----a-~~f~v~~~~---~~~~~~L~-~Spq----l 406 (883)
-.-.+++..|.+.+|+.| .+ ||.||.||+|.... - .| + .-|.+.... .+..++|+ +|-+ +
T Consensus 68 P~g~~l~~~i~~~~~~~~-~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~ 145 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRIL-DR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-Hc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHH
Confidence 344678889999999999 78 99999999997742 1 12 1 124443221 14567886 3332 3
Q ss_pred HHHHHHcc-CCC-cEEEEeeceecCCC-CCC--CCccee-cccccccCCCHHHHHHHHHHHHH
Q psy8372 407 LKQLLMVG-SVD-RYFQIARCYRDEST-RPD--RQPEFT-QLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 407 ~kq~l~~~-~~~-rvf~I~~~FR~E~~-~~~--r~~EFt-~le~e~~~~~~~dvm~~~E~li~ 463 (883)
|++.+... .+. |+|||++|||+|.. ... |..||+ |.|++..+.+.++..+.+++++.
T Consensus 146 ~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~ 208 (501)
T 1nj1_A 146 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVE 208 (501)
T ss_dssp HHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHH
Confidence 44432211 233 99999999999987 445 778999 99999999998777777666554
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.68 E-value=4.3e-05 Score=88.21 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-----c-cceeccCCCCceeeEecC--HH---HHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-----R-EFVVPTHEPNKFYSLVQS--PQ---QLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-----~-~f~v~~~~~~~~~~L~~S--pq---l~kq~l 411 (883)
.-.+++..|.+.+|+.| .+.||.||.||+|.... .+|. . -|.++ ..+..++|+.- +. +|++.+
T Consensus 47 ~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d--~~~~~l~LRP~~t~~i~~~~~~~~ 123 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFH-ARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD--IEGHEFAVKPMNCPYHILLFLNEV 123 (471)
T ss_dssp THHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEE--ETTEEEEECSCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHcCCEEEECCeeeehHHhhhccCccccccceEEEe--cCCcEEEEccccHHHHHHHHHhhh
Confidence 44678999999999999 68999999999998752 1221 1 25553 23677888722 22 344432
Q ss_pred Hcc----CCC-cEEEEeeceecCCCC--CC--CCcceecccccccCC
Q psy8372 412 MVG----SVD-RYFQIARCYRDESTR--PD--RQPEFTQLDIELSFT 449 (883)
Q Consensus 412 ~~~----~~~-rvf~I~~~FR~E~~~--~~--r~~EFt~le~e~~~~ 449 (883)
-.. .+. |+|||++|||+|... .. |..||+|.|+|....
T Consensus 124 ~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~ 170 (471)
T 3a32_A 124 AKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP 170 (471)
T ss_dssp HHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE
T ss_pred hhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC
Confidence 221 444 999999999999876 56 889999999999653
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.63 E-value=8.2e-05 Score=85.70 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC---c-cceeccCC--------------CCceeeEe--
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA---R-EFVVPTHE--------------PNKFYSLV-- 401 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga---~-~f~v~~~~--------------~~~~~~L~-- 401 (883)
-.-..++..|.+.+|+.| ...||.||.||++.... .+|. . -|.+.-.. .+..+.|+
T Consensus 23 P~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd 101 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVY-ESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFD 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCC
Confidence 344568899999999999 68999999999995431 1122 1 24432221 25677886
Q ss_pred cCHHHHHHHHHc---cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCC--H----HHHHHHHHHHHHHH
Q psy8372 402 QSPQQLKQLLMV---GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--R----DDVMRLIEELLCYC 465 (883)
Q Consensus 402 ~Spql~kq~l~~---~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~----~dvm~~~E~li~~i 465 (883)
-.|.+..-.+.. ... -|.|+||+|||.|.++..|..||+|+++|+.+.+ . .|++.++-++++.+
T Consensus 102 ~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 102 QTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp SHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 233343222111 122 2999999999999999899999999999998865 2 24666665555543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.1e-05 Score=72.23 Aligned_cols=88 Identities=22% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCC-hHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG-~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||||||.| ..+..|+. .|+. |+++|+++.+++ +++.|+.+..... -+.||+|++..
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~~-V~atDInp~Av~---------------~v~dDiF~P~~~~-Y~~~DLIYsir 97 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKVD-LVLTDIKPSHGG---------------IVRDDITSPRMEI-YRGAALIYSIR 97 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCCE-EEEECSSCSSTT---------------EECCCSSSCCHHH-HTTEEEEEEES
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCCe-EEEEECCccccc---------------eEEccCCCCcccc-cCCcCEEEEcC
Confidence 4679999999999 69988886 6665 999999987755 5777776633210 13799998866
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. +.++...+.++++.. |.-++|.....
T Consensus 98 P-----P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 98 P-----PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp C-----CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred C-----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 3 234555666666544 56788876543
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00012 Score=83.16 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-ccceec-cCCCCceeeEecCHHHHHHHHHcc-----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-REFVVP-THEPNKFYSLVQSPQQLKQLLMVG----- 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-~~f~v~-~~~~~~~~~L~~Spql~kq~l~~~----- 414 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. ..|.-. |...+..++|....+.-.-.++..
T Consensus 163 p~ga~l~~aL~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 163 GDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcCCeEEEeecCcHHHHHHhcccccCc
Confidence 355788999999999999 57999999999997742 1121 112111 111135678864443222221221
Q ss_pred -CCC-cEEEEeeceecCCCC-----CC--CCcceecccccccCCC-HHHHHHHHHHHHHH---HhccCCCCce
Q psy8372 415 -SVD-RYFQIARCYRDESTR-----PD--RQPEFTQLDIELSFTT-RDDVMRLIEELLCY---CLNIPTRTFS 474 (883)
Q Consensus 415 -~~~-rvf~I~~~FR~E~~~-----~~--r~~EFt~le~e~~~~~-~~dvm~~~E~li~~---i~~~~~~~f~ 474 (883)
.+. |+|++++|||+|.+. .. |.-||+|.|++..... .++..+..++++.. +++.+.-||.
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~r 314 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYR 314 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceE
Confidence 122 999999999999632 23 6789999999875554 46666655555543 3334444444
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=5e-05 Score=86.90 Aligned_cols=116 Identities=15% Similarity=0.289 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--CC------ccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--GA------REFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--ga------~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
..-.+++.+|++.+++.+ .++||.||.||.|.... .. |. .-|.+... +..+||....+.-.-.+....
T Consensus 205 p~GarL~~aL~~f~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~ 281 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFL-VKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGR 281 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhcc
Confidence 456899999999999999 68999999999998752 11 21 23555422 456888644443322112111
Q ss_pred ------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHH--HHHHHHHHHHH
Q psy8372 416 ------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDD--VMRLIEELLCY 464 (883)
Q Consensus 416 ------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~d--vm~~~E~li~~ 464 (883)
+. |+|++++|||+|.... -|.-||+|.|.+. |...++ ..+..++|+..
T Consensus 282 i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~ 345 (484)
T 3lss_A 282 WFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITT 345 (484)
T ss_dssp EESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHH
T ss_pred ccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHH
Confidence 12 8999999999997421 3557999999975 555444 66666666644
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=4.1e-05 Score=91.62 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEecCH-HHHHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQSP-QQLKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~Sp-ql~kq~l~~~ 414 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|. .-|.++ ..+..++|+.-. +-+-.+ ...
T Consensus 268 P~g~~l~~~l~~~~r~~~-~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d--~~~~~~~LrP~~~~~~~~~-~~~ 343 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQI-FNQ 343 (642)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEE--ETTEEEEECSSSHHHHHHH-HTT
T ss_pred CcHHHHHHHHHHHHHHHH-HHcCCEEEECCcCccHHHHhhcCccccccccceeee--cCCceEEecCCCCHHHHHH-HHh
Confidence 456889999999999999 68999999999997752 1232 124422 235678887322 222222 121
Q ss_pred ------CCC-cEEEEeeceecCCC--CCC--CCcceecccccccCCCHHHHHHH
Q psy8372 415 ------SVD-RYFQIARCYRDEST--RPD--RQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 415 ------~~~-rvf~I~~~FR~E~~--~~~--r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
.+. |+||||+|||+|.+ ... |..||||.|++. |.+.+++.+.
T Consensus 344 ~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e 396 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDE 396 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred hhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHH
Confidence 222 99999999999998 344 889999999998 5554444333
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.57 E-value=6.3e-05 Score=86.08 Aligned_cols=117 Identities=13% Similarity=0.260 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-ccceec-cCCCCceeeEecCHHH-HHHHHHc-----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-REFVVP-THEPNKFYSLVQSPQQ-LKQLLMV----- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-~~f~v~-~~~~~~~~~L~~Spql-~kq~l~~----- 413 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. ..|.-. |...+..++|....+. +-.+ ..
T Consensus 190 p~ga~l~~aL~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~-~~~~~~s 267 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGM-HANEILD 267 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHT-TTTEEEE
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHH-HHhCccC
Confidence 355788999999999999 68999999999998752 1232 113111 1112456788744332 2221 11
Q ss_pred -cCCC-cEEEEeeceecCCCCCC-------CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 414 -GSVD-RYFQIARCYRDESTRPD-------RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~~~~~-------r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
..+. |+|++++|||+|.+... |.-||+|.|+. .|.+.++..+..++++..
T Consensus 268 ~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~ 326 (455)
T 2dq0_A 268 GKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRN 326 (455)
T ss_dssp TTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHH
T ss_pred chhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHH
Confidence 1222 99999999999987432 67899999998 466656666666666643
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=76.97 Aligned_cols=129 Identities=10% Similarity=-0.025 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----C--CCeEEEEeCCHH--------------------------HHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----H--FDKIDLLEQSSK--------------------------FIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g--~~~V~gvD~S~~--------------------------~le~A~~~~~~~ 180 (883)
...++|||+||..|..+..++.. + ..+|+++|..+. .++.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 34569999999999988776542 1 236999996421 467788888776
Q ss_pred cC--CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCccc
Q psy8372 181 CD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 258 (883)
Q Consensus 181 ~~--~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~ 258 (883)
+. .+++++.+++.+..+...+++||+|+.-.-. . +.....+..+...|+|||++++.+...
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y--~~~~~~Le~~~p~L~pGGiIv~DD~~~------------- 247 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y--ESTWDTLTNLYPKVSVGGYVIVDDYMM------------- 247 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H--HHHHHHHHHHGGGEEEEEEEEESSCTT-------------
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c--ccHHHHHHHHHhhcCCCEEEEEcCCCC-------------
Confidence 53 6789999998775444334689999987642 1 225678999999999999998877421
Q ss_pred ccccchhhhhhhhhcccccc
Q psy8372 259 VVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 259 ~~~s~~~~~~l~~~aGf~vv 278 (883)
.......+.+++++.|+...
T Consensus 248 ~~G~~~Av~Ef~~~~~i~~~ 267 (282)
T 2wk1_A 248 CPPCKDAVDEYRAKFDIADE 267 (282)
T ss_dssp CHHHHHHHHHHHHHTTCCSC
T ss_pred CHHHHHHHHHHHHhcCCceE
Confidence 01123466666666665543
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=85.11 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc-c-----ceeccCCC---CceeeEe-cCHH----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR-E-----FVVPTHEP---NKFYSLV-QSPQ----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~-~-----f~v~~~~~---~~~~~L~-~Spq----l 406 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|.- . |.+..... +..++|+ +|=. +
T Consensus 58 P~G~~i~~~L~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~ 136 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEI-KKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPA 136 (519)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHH
Confidence 344678999999999999 68999999999997642 22321 1 33322111 2357885 3322 3
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
|++.+.. ..+. |+|++++|||.|... .. |..||+|.|.+..|.+.++..+.+++++..
T Consensus 137 ~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 137 YAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp HHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 4443211 1233 999999999999443 44 778999999999999988887777766543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=80.36 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC------CCccEEEccCCCCCCCcCCCCc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD------KLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~F 204 (883)
..++.+|||++||.|.=+..++..+.. .|+++|+|+.-++..++++...+. .++.....|...+.... .+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~-~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE-GDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS-TTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc-cccC
Confidence 367889999999999988888877654 799999999999999888765432 34456666665543211 3589
Q ss_pred cEEEEc----c----ccc-------ccChHH-------HHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 205 DVIWIQ----W----VLM-------FILDED-------IIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 205 DlVvs~----~----vL~-------hl~ded-------~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
|.|++. . ++. ....++ ..++|..+.++|||||+|+-++++-.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 999952 2 111 111111 24788899999999999999987643
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=84.35 Aligned_cols=130 Identities=12% Similarity=0.249 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC--------CC-CCccceeccCC-------CCceeeEecCHHH-H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT--------PG-GAREFVVPTHE-------PNKFYSLVQSPQQ-L 407 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--------~~-ga~~f~v~~~~-------~~~~~~L~~Spql-~ 407 (883)
..-.+++..|++.+++.+ .+.||.||.||.|.... +. +...|.+.... .+..+||....+. +
T Consensus 198 p~GarL~raL~~f~~d~~-~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l 276 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTL-GSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPI 276 (522)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHH
Confidence 456789999999999999 57999999999997641 11 11235554221 1346788744433 2
Q ss_pred HHHHHcc------CCC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHH--HHHHHHHHHHH---HHhcc
Q psy8372 408 KQLLMVG------SVD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRD--DVMRLIEELLC---YCLNI 468 (883)
Q Consensus 408 kq~l~~~------~~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~--dvm~~~E~li~---~i~~~ 468 (883)
-.+ ... .+. |+|++++|||+|.+.. -|.-||+|.|.+. |..-+ +..+..++|+. .+++.
T Consensus 277 ~~l-~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~e~il~~ 354 (522)
T 3vbb_A 277 AAL-HRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTAEEFYQS 354 (522)
T ss_dssp HTT-STTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 122 8999999999998632 3558999999975 44432 25555555554 34444
Q ss_pred CCCCceeee
Q psy8372 469 PTRTFSRIS 477 (883)
Q Consensus 469 ~~~~f~rit 477 (883)
+.-||..+.
T Consensus 355 LGLpyrvv~ 363 (522)
T 3vbb_A 355 LGIPYHIVN 363 (522)
T ss_dssp TTCCEEEEE
T ss_pred cCCceEEEE
Confidence 555555443
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=83.21 Aligned_cols=128 Identities=13% Similarity=0.245 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-C--CC------CccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-P--GG------AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~--~g------a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
-.-.+++..|++.+++.+ .+.||.||.||.|.... - .| ...|.+... +..+||.-..+.-.-.++...
T Consensus 182 p~GarL~~aL~~~~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~e 258 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFL-SSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGE 258 (485)
T ss_dssp THHHHHHHHHHHHHHHHH-HTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHHHHHHHhcc
Confidence 466789999999999999 68999999999998752 1 12 123555321 356777544343222122221
Q ss_pred --------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceee
Q psy8372 416 --------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRI 476 (883)
Q Consensus 416 --------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~ri 476 (883)
+. |+|++++|||+|.... -|.-||+|.|.+. |...++..+..++|+.. +++.+.-||..+
T Consensus 259 i~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv 337 (485)
T 3qne_A 259 WFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVV 337 (485)
T ss_dssp EESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 22 7999999999997541 3557999999987 66666666666666543 344444455544
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00032 Score=80.88 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC-----CC-ccceeccCCCCceeeEecCHHH-HHHHHHc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG-----GA-REFVVPTHEPNKFYSLVQSPQQ-LKQLLMV 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~-----ga-~~f~v~~~~~~~~~~L~~Spql-~kq~l~~ 413 (883)
..-.++..+|.+.+++.+ .+.||.||.||.|.... +| +. .-|.+... .+..+||.-..+. +-.+ ..
T Consensus 216 p~GarL~~aL~~~~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l-~~ 292 (501)
T 1wle_A 216 GAGALLQHGLVNFTLNKL-IHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGY-FM 292 (501)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHH-HT
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHH-Hh
Confidence 455889999999999999 57999999999998742 11 11 23555322 1356788755553 2222 22
Q ss_pred c------CCC-cEEEEeeceecCCC------CCCCCcceecccccccCCCH-HHHHHHHHHHHHH
Q psy8372 414 G------SVD-RYFQIARCYRDEST------RPDRQPEFTQLDIELSFTTR-DDVMRLIEELLCY 464 (883)
Q Consensus 414 ~------~~~-rvf~I~~~FR~E~~------~~~r~~EFt~le~e~~~~~~-~dvm~~~E~li~~ 464 (883)
. .+. |++++++|||+|.. .--|.-||+|.|.+..-... ++..+..++|+..
T Consensus 293 ~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 293 DHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp TEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred hccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 1 122 99999999999976 12355899999998855554 6777777777754
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00025 Score=82.59 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C------CccceeccCCCCceeeEecCHH-HHHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G------AREFVVPTHEPNKFYSLVQSPQ-QLKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g------a~~f~v~~~~~~~~~~L~~Spq-l~kq~l~~~ 414 (883)
..-.+++..|++.+++.+ .+.||.||.||.|.... -. | ..-|.+. +..+||....+ -+-.+ ...
T Consensus 272 p~Ga~l~~aL~~~~~~~~-~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~----~~~~~L~PT~E~~~~~l-~~~ 345 (536)
T 3err_A 272 GDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNAL-HSG 345 (536)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET----TTTEEECSSTHHHHHHH-TTT
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEeccccccHHHHHhcCCcccChhhceEec----CCCEEEccCCcHHHHHH-Hhc
Confidence 456889999999999999 57999999999997742 11 1 1225543 24578864433 33332 221
Q ss_pred C------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCH--HHHHHHHHHHHHH---HhccCCCCcee
Q psy8372 415 S------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTR--DDVMRLIEELLCY---CLNIPTRTFSR 475 (883)
Q Consensus 415 ~------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~--~dvm~~~E~li~~---i~~~~~~~f~r 475 (883)
. +. |+|++++|||+|.... -|.-||+|.|.+. |..- ++..+..++++.. +++.+.-||..
T Consensus 346 ~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrv 424 (536)
T 3err_A 346 EILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENAEEILRLLELPYRL 424 (536)
T ss_dssp CEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 1 22 8999999999997421 3558999999986 5443 4777777777654 33344444443
Q ss_pred e
Q psy8372 476 I 476 (883)
Q Consensus 476 i 476 (883)
+
T Consensus 425 v 425 (536)
T 3err_A 425 V 425 (536)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=9.8e-05 Score=78.79 Aligned_cols=108 Identities=17% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||+||++|.++..++.. +...|.|+|++..+...... .......+..+..++...... ++.+|+|+|.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~~di~~l~--~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDKSNVFTMP--TEPSDTLLCD 154 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecCceeeecC--CCCcCEEeec
Confidence 357889999999999999977764 44478999997543111000 000001111222222211111 3589999997
Q ss_pred ccccccCh---HH--HHHHHHHHHHHhccC-cEEEEEecc
Q psy8372 211 WVLMFILD---ED--IIKFLNLCKQILNKN-GIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~d---ed--~~~~l~~~~r~LKPG-G~lvi~~~~ 244 (883)
.+.. ... +. ...++.-+.++|+|| |.|++..+.
T Consensus 155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 6655 221 11 234577788999999 999998754
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00027 Score=82.12 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=36.7
Q ss_pred CCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 415 SVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
.+. |+|||++|||+| ..+.. |..||+|.|+| .|.+.++..+..++++.
T Consensus 207 ~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~ 258 (505)
T 1ati_A 207 KLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVE 258 (505)
T ss_dssp CSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHH
T ss_pred CCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHH
Confidence 444 999999999999 55555 88999999999 68886666555555554
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00045 Score=76.43 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+|++|||+||++|.++..++.++. .|++||+.+ |-... . ....+++++.|+..+.+.. +.+|+|+|.++
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l----~--~~~~V~~~~~d~~~~~~~~--~~~D~vvsDm~ 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSL----M--DTGQVTWLREDGFKFRPTR--SNISWMVCDMV 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHH----H--TTTCEEEECSCTTTCCCCS--SCEEEEEECCS
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhh----c--cCCCeEEEeCccccccCCC--CCcCEEEEcCC
Confidence 5789999999999999998888876 599999864 21111 1 2346688999988877654 68999999876
Q ss_pred ccccChHHHHHHHHHHHHHhccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG 235 (883)
.. +...+..+.++|..|
T Consensus 280 ~~------p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 EK------PAKVAALMAQWLVNG 296 (375)
T ss_dssp SC------HHHHHHHHHHHHHTT
T ss_pred CC------hHHhHHHHHHHHhcc
Confidence 53 345556666666654
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00019 Score=76.85 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=65.9
Q ss_pred HHHHHH--HHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEe--cCHHHHHHHHHcc-C-C-CcEEEEeec
Q psy8372 354 FLMRTR--EFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMVG-S-V-DRYFQIARC 425 (883)
Q Consensus 354 i~~~iR--~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~-~-~-~rvf~I~~~ 425 (883)
|.+.+| +.| .+.||.||.||++..... .. ..|. + ..|..+.|+ -.|.+.... +.. . . -|.|++|+|
T Consensus 6 le~~~r~~~~~-~~~Gy~eI~tP~le~~~l~~~-d~f~-d--~~g~~l~LRpd~T~~~a~~~-~~~~~~~p~R~~y~g~v 79 (275)
T 1usy_A 6 FEKVFSFYSKA-TKKGFSPFFVPALEKAEEPAG-NFFL-D--RKGNLFSIREDFTKTVLNHR-KRYSPDSQIKVWYADFV 79 (275)
T ss_dssp HHHHHHHHHHH-HHTTCEECCCCSEEECSSCCS-SCEE-E--TTSCEEEECCCHHHHHHHHH-TTCTTCCCEEEECCEEE
T ss_pred HHHHHHHHHHH-HHCCCEEecCccccchhhhcc-cccC-C--CCCCEEEeCCcChHHHHHHH-hhcCCCCceEEEEeceE
Confidence 445555 888 579999999999976532 22 2332 2 246778887 233344332 222 2 2 399999999
Q ss_pred eecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHH
Q psy8372 426 YRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLC 463 (883)
Q Consensus 426 FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~ 463 (883)
||.|.+.. .||+|+++|+...+ -.+++.++-++++
T Consensus 80 fR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~ 118 (275)
T 1usy_A 80 YRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESAS 118 (275)
T ss_dssp EEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHH
Confidence 99998877 79999999998875 2344444444443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00029 Score=78.26 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc--------CCCccEEEccCCCCCCC--cCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--------DKLDKCYNVGIQDFKPE--DLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~--------~~~~~~~~~d~~~~~~~--~~~~ 202 (883)
.+..+||=||.|.|..+..+++....+|+.||+++.+++.|++.+.... ..+++.+..|...+... ...+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3457999999999999998887666689999999999999999764321 12346677776554321 1135
Q ss_pred CccEEEEcccc-------cccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVL-------MFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL-------~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+|+....- ..... .-...+++.++++|+|||+++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 79999985321 11111 113578899999999999998865
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=83.00 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=40.6
Q ss_pred ccccccCCcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCC
Q psy8372 11 HTCGALRLSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 11 ~~~~~~~~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~ 57 (883)
..+.++ .+++|++|+|+|||+++|+ .+|++|||++|.+||++++++
T Consensus 20 ~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~ 69 (456)
T 3m4p_A 20 CNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE 69 (456)
T ss_dssp EECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT
T ss_pred EEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc
Confidence 457777 6889999999999999998 579999999999999997644
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00022 Score=82.55 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHH-HHhcCCCeEEEcCCeeccCC---CCC-----Cc-cceecc---CC------------------
Q psy8372 345 QHNLRFRSKFLMRTRE-FLATHRDFVEVETPTLFKRT---PGG-----AR-EFVVPT---HE------------------ 393 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~-f~~~~~gF~EV~TP~l~~~~---~~g-----a~-~f~v~~---~~------------------ 393 (883)
-.-.+++..|.+.+++ ++ .+.||.||.||+|.+.. ..| +. -|.+.. +.
T Consensus 228 P~G~~L~~~L~~~~~~e~~-~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~ 306 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELL-EPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVP 306 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTH-HHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCC
T ss_pred chHHHHHHHHHHHHHHHHH-HHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccc
Confidence 4456788999999996 57 57899999999997741 112 11 244421 01
Q ss_pred --------CCceeeEecCHH--H---HHHHHHc-cCCC-cEEE-EeeceecCCCC----CCCCcceecccccccCCCHHH
Q psy8372 394 --------PNKFYSLVQSPQ--Q---LKQLLMV-GSVD-RYFQ-IARCYRDESTR----PDRQPEFTQLDIELSFTTRDD 453 (883)
Q Consensus 394 --------~~~~~~L~~Spq--l---~kq~l~~-~~~~-rvf~-I~~~FR~E~~~----~~r~~EFt~le~e~~~~~~~d 453 (883)
.+..++|+...+ + |+..... ..+. |+|| |++|||+| ++ -.|.-||+|.|++. |.+.++
T Consensus 307 ~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 307 TKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp HHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred ccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 245678863322 1 2221111 1122 8999 99999999 54 25779999999998 778888
Q ss_pred HHHHHHHHH
Q psy8372 454 VMRLIEELL 462 (883)
Q Consensus 454 vm~~~E~li 462 (883)
..+..++++
T Consensus 385 s~ee~ee~i 393 (522)
T 2cja_A 385 VLKCAEELH 393 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777777
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00051 Score=71.78 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=65.4
Q ss_pred HHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEc-cCCCC
Q psy8372 122 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNV-GIQDF 195 (883)
Q Consensus 122 L~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~-d~~~~ 195 (883)
|.++.... ...++++|||+||+.|.++..++.. +...|.|.++.... . ..+.. +...+.+.++ |+.+.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~~~~Gv~~i~~~~G~Df~~~ 135 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLMQSYGWNIVTMKSGVDVFYK 135 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCCCSTTGGGEEEECSCCGGGS
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcccCCCceEEEeeccCCccCC
Confidence 34443333 4578999999999999999866654 12234555544321 0 00000 1112233335 87764
Q ss_pred CCCcCCCCccEEEEcccccccCh---HHH--HHHHHHHHHHhccCc-EEEEEecc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILD---EDI--IKFLNLCKQILNKNG-IIIIKDNV 244 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~d---ed~--~~~l~~~~r~LKPGG-~lvi~~~~ 244 (883)
. +.++|+|+|-++-. ... +.. ..+|.-+.++|+||| .|++-.+.
T Consensus 136 ~----~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 136 P----SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp C----CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C----CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 3 24799999976443 221 111 125667779999999 89998754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0057 Score=71.42 Aligned_cols=126 Identities=16% Similarity=0.022 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh----C----------CCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK----H----------FDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~----g----------~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.+...+++..++. +.++.+|+|-+||+|.+...+... . ...++|+|+++.+...|+.+..-+
T Consensus 202 P~~Vv~lmv~l~~----p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh 277 (530)
T 3ufb_A 202 PRPVVRFMVEVMD----PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH 277 (530)
T ss_dssp CHHHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhc----cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc
Confidence 4444455555542 246779999999999998765432 1 125999999999999999887655
Q ss_pred cCCCccEEEccCCCCCCCc--CCCCccEEEEcccccccCh--------------HHHHHHHHHHHHHhc-------cCcE
Q psy8372 181 CDKLDKCYNVGIQDFKPED--LNIKYDVIWIQWVLMFILD--------------EDIIKFLNLCKQILN-------KNGI 237 (883)
Q Consensus 181 ~~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~~vL~hl~d--------------ed~~~~l~~~~r~LK-------PGG~ 237 (883)
+.....+...|....+... ...+||+|+++.-+.--.. +.-..+++.+.+.|| |||+
T Consensus 278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr 357 (530)
T 3ufb_A 278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR 357 (530)
T ss_dssp TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence 5444456666665443211 1247999999886631100 112357888888887 6999
Q ss_pred EEEEecc
Q psy8372 238 IIIKDNV 244 (883)
Q Consensus 238 lvi~~~~ 244 (883)
+.+..+.
T Consensus 358 ~avVlP~ 364 (530)
T 3ufb_A 358 AAVVVPN 364 (530)
T ss_dssp EEEEEEH
T ss_pred EEEEecc
Confidence 9998853
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00032 Score=79.86 Aligned_cols=42 Identities=31% Similarity=0.563 Sum_probs=36.5
Q ss_pred ccccCCcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecC
Q psy8372 13 CGALRLSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 13 ~~~~~~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~ 55 (883)
+.++ .+++|++|+|+|||+++|+ .+|++|||++|.+||++++
T Consensus 3 i~~~-~~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~ 48 (435)
T 2xgt_A 3 IRDL-VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMD 48 (435)
T ss_dssp GGGG-GGGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEG
T ss_pred hhhh-hhcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECC
Confidence 3455 4688999999999999998 4899999999999999963
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.003 Score=67.14 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++++|||+||++|.++.+++.. ++..|+|+|+...--+.- ........+.+.+... |+..+.+ .++|+|+|.
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~----~~~D~ivcD 167 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS----ECCDTLLCD 167 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC----CCCSEEEEC
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC----CCCCEEEEE
Confidence 56779999999999999866554 445899999875411000 0000111233556665 6655554 369999997
Q ss_pred ccccccChHH-----HHHHHHHHHHHhccC-cEEEEEeccc
Q psy8372 211 WVLMFILDED-----IIKFLNLCKQILNKN-GIIIIKDNVA 245 (883)
Q Consensus 211 ~vL~hl~ded-----~~~~l~~~~r~LKPG-G~lvi~~~~~ 245 (883)
.. +--+... -..+|.-+.++|++| |-+++-.++.
T Consensus 168 ig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 168 IG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred Cc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 65 4443311 223677778999999 8999877543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0015 Score=69.56 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
.+++.+||.+||.|..+..++..+ ..|+|+|.++.+++.|++ +.. .++.+++.++.++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l 78 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHL 78 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchH
Confidence 467899999999999999998873 479999999999999988 542 3455666665544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00037 Score=94.96 Aligned_cols=141 Identities=17% Similarity=0.097 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g------~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+..+||+||.|+|..+..++... +.+++.+|+|+...+.|++++... .++.-..|..+.... ..++||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~-~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPG-SLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC------CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccC-CCCceeE
Confidence 356799999999998766555431 237899999998888888776532 001111122221010 1357999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC----cccccCC--cccccccchhhhhhhhhccccccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV----KNEYDDE--DSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~----~~~~~~~--~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
|++.+++|-.++ +...+.+++++|||||++++.+...... ...+... ......+..+|..++..+||..+.
T Consensus 1315 via~~vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~ 1391 (2512)
T 2vz8_A 1315 LVCNCALATLGD--PAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVA 1391 (2512)
T ss_dssp EEEECC----------------------CCEEEEEEC--------------------------CTTTTSSTTTTEEEEE
T ss_pred EEEccccccccc--HHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceee
Confidence 999999987654 7789999999999999999876432100 0001100 112234567899999999997764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0021 Score=69.32 Aligned_cols=47 Identities=21% Similarity=0.075 Sum_probs=41.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.++..|||++||+|.++..++..|. .++|+|+++.+++.|++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 4678999999999999987777665 5999999999999999998764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0076 Score=62.10 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs 209 (883)
..++++|||+||++|.++.+++.. +...|+|+|+-..--+.- ......+.+.++|.+. |+....+ .++|.|+|
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~~----~~~Dtllc 150 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLPP----EKCDTLLC 150 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCCC----CCCSEEEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecCC----ccccEEEE
Confidence 357789999999999999866655 445899999875321000 0011123456788887 7755544 36999999
Q ss_pred cccccccCh--H--HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 210 QWVLMFILD--E--DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 210 ~~vL~hl~d--e--d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
...=..-.. + .-..+|.-+.++|++ |.+++-..+.
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 654322111 1 123367777899998 8888877544
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0042 Score=67.74 Aligned_cols=130 Identities=15% Similarity=0.043 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc--------cceeccCC----------------------
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR--------EFVVPTHE---------------------- 393 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~--------~f~v~~~~---------------------- 393 (883)
..-.+++..|.+.+|+ . .+.||.||.||.|.... -++++ -|.+....
T Consensus 61 g~~a~L~~aLe~~~~~-~-~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~ 138 (346)
T 3mf2_A 61 ALYESIVERLAALITS-H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTS 138 (346)
T ss_dssp HHHHHHHHHHHHHHHH-T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGG
T ss_pred chHHHHHHHHHHHHHh-h-HhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccc
Confidence 3446788899999999 7 57899999999997742 12221 13332211
Q ss_pred -CCceeeEecCHH-----HHHHH-HHccCCCcEEEEeeceecCCC-CCCCCcceecccccccCCCHHHHHHHHHHHHHH-
Q psy8372 394 -PNKFYSLVQSPQ-----QLKQL-LMVGSVDRYFQIARCYRDEST-RPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY- 464 (883)
Q Consensus 394 -~~~~~~L~~Spq-----l~kq~-l~~~~~~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~- 464 (883)
.+..+||....+ +|+.. .+...=-|+-.+++|||.|.+ +-.|.-+|+|.|+-. |.+.+++.+..|+++..
T Consensus 139 l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 139 LSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 124578863332 33421 111111266679999999997 456779999999866 67888888888888865
Q ss_pred --HhccCCCCceeee
Q psy8372 465 --CLNIPTRTFSRIS 477 (883)
Q Consensus 465 --i~~~~~~~f~rit 477 (883)
+++.+.-||+.+.
T Consensus 218 e~il~~LgLpyrv~~ 232 (346)
T 3mf2_A 218 QAIARDLGLTFRVDY 232 (346)
T ss_dssp HHHHHHTTCCCEEEE
T ss_pred HHHHHHCCCCEEEEE
Confidence 4455666777664
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=79.52 Aligned_cols=53 Identities=32% Similarity=0.321 Sum_probs=36.6
Q ss_pred CceeeEe---cCHH--HHHHHHHccC--CC-cEEEEeeceecC-CCCCC--CCcceeccccccc
Q psy8372 395 NKFYSLV---QSPQ--QLKQLLMVGS--VD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELS 447 (883)
Q Consensus 395 ~~~~~L~---~Spq--l~kq~l~~~~--~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~ 447 (883)
+...||+ ..+. .|+.++.... +. |+||||++||+| ..+.. |-.||+|.|+|.-
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F 300 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEE
T ss_pred CcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEE
Confidence 3556776 2222 2566543322 32 999999999999 55666 7799999999983
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00096 Score=77.54 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=41.1
Q ss_pred cccccccccC---------CcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALR---------LSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~---------~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~ 57 (883)
.|||.+.++. ....|++|+|+|||.++|+ .+|++|||++|.+||++.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~ 94 (521)
T 3bju_A 32 HVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRN 94 (521)
T ss_dssp CCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGG
T ss_pred cCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCc
Confidence 4777777763 2346899999999999997 579999999999999997654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.043 Score=60.16 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc---------------------CCCccEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC---------------------DKLDKCYNVG 191 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~---------------------~~~~~~~~~d 191 (883)
+...|+.+|||.......+...+.. .++-||. |.+++.-++.+.... .....++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4568999999999999888776434 5667776 788777777665431 2455778888
Q ss_pred CCCCCC-------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 192 IQDFKP-------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 192 ~~~~~~-------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+... ....+...++++-.++++++.+...++++.+.+.. |+|.+++.+...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 876311 11124678999999999999988999999999877 788877666543
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0034 Score=72.52 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=50.0
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||+|++.-+.+. ++.|+...+|.++..+
T Consensus 194 vLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 194 TLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp ECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred ccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5666666643221 11 189999999998764 556679999999998886 6999999999998765
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0024 Score=74.36 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 7999999999999864
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0025 Score=74.30 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 7999999999999864
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0026 Score=74.21 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 6999999999999865
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0029 Score=74.07 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.6
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 6999999999999865
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.016 Score=65.98 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEcCCeeccCCCCCC-ccceeccCCCCceeeEec--CHHHH---HHHHHcc--CCC
Q psy8372 347 NLRFRSKFLMRTREFLATHRD-FVEVETPTLFKRTPGGA-REFVVPTHEPNKFYSLVQ--SPQQL---KQLLMVG--SVD 417 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~g-F~EV~TP~l~~~~~~ga-~~f~v~~~~~~~~~~L~~--Spql~---kq~l~~~--~~~ 417 (883)
=..+|+.|.+..|..+..++| +.||.||+.......|. ..|. +||+. +|-.+ +..+-.. .+.
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~---------~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR---------GGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT---------TB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc---------ceECCCCChhHHHHHhhhhhhccccCC
Confidence 357889999855555534355 78899999543322332 2232 57763 44332 2221111 222
Q ss_pred -cEEEEeeceecCC--CCC----CCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 418 -RYFQIARCYRDES--TRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 -rvf~I~~~FR~E~--~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
|+.|||+|||+|. +.+ -|--||||.|++. |.+.++..+..+.++...
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 7999999999995 333 3448999999985 777666666666655443
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=68.09 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=50.4
Q ss_pred eeEecCH--HHHHHHHHc--c-CC-CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 398 YSLVQSP--QQLKQLLMV--G-SV-DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 398 ~~L~~Sp--ql~kq~l~~--~-~~-~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
..|++|- .+..++... . .. -|+|+||+|||.|.. +..|.+||+|++..+.+. ++.+++.++|.++..+
T Consensus 181 svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 181 LTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred cccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4577554 444553221 1 11 289999999998776 666779999999999884 6999999999988765
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.015 Score=65.73 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=35.7
Q ss_pred eeEe--cCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccc
Q psy8372 398 YSLV--QSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDI 444 (883)
Q Consensus 398 ~~L~--~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~ 444 (883)
.-|+ +||-+.+-+ ..+..|+|++|.|||.+..++.|.|+|.|+|-
T Consensus 114 ~vLRThts~~~~~~l--~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~eg 160 (415)
T 3cmq_A 114 HMLRAHTSAHQWDLL--HAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEA 160 (415)
T ss_dssp EEECSSGGGGHHHHH--HTTCSEEEEEEEEECCCCCBTTBCSEEEEEEE
T ss_pred eEEcCCCcHHHHHHH--HHCCCCEEEeeeEEeccchhhhhhHHhcCCCc
Confidence 3465 667555443 45567999999999999999999999999993
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=67.71 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCeEEEcCCeeccCC-CCCC--------ccceec-------------c--CCCCceeeEe
Q psy8372 347 NLRFRSKFLMRTREF-LATHRDFVEVETPTLFKRT-PGGA--------REFVVP-------------T--HEPNKFYSLV 401 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f-~~~~~gF~EV~TP~l~~~~-~~ga--------~~f~v~-------------~--~~~~~~~~L~ 401 (883)
=..++..|.+.+++. +..+.|+.||.||+|.+.. -.+. ..+.-. . ...+..+||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 457889999988876 3236899999999997653 1211 111100 0 0012356787
Q ss_pred --cCHHH---HHHHHHcc--CCC-cEEEEeecee---cCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 402 --QSPQQ---LKQLLMVG--SVD-RYFQIARCYR---DESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 402 --~Spql---~kq~l~~~--~~~-rvf~I~~~FR---~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
++|.. |+..+-.. .+. +++|||+||| ||-+.. -|..||+|.|++. |.+.++..+..+.++..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRH 216 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHH
Confidence 44432 45543222 344 9999999999 696531 2448999999996 77877777666665544
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.026 Score=60.89 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----HhCCC---eEEEEeCCH--------H-HHHHHH---HHHhhccCCC--ccEEEccC
Q psy8372 134 GKTRVLDVGAGIGRISKYLL----AKHFD---KIDLLEQSS--------K-FIEQAK---EEILKDCDKL--DKCYNVGI 192 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~----~~g~~---~V~gvD~S~--------~-~le~A~---~~~~~~~~~~--~~~~~~d~ 192 (883)
+.-+|||+|-|+|.++...+ +.+.. +++.+|..+ . ..+.++ .......... ..+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34589999999999764332 22333 456666421 1 111121 1111111122 24566676
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
.+..+.-.+..||+|+.-.--..-.++- -..+++.++++++|||+|+--+ ....++..|.
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-------------------aag~VRR~L~ 236 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-------------------SSLSVRKSLL 236 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-------------------CCHHHHHHHH
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-------------------CcHHHHHHHH
Confidence 5533221124799999854211111110 1479999999999999986433 2457789999
Q ss_pred hcccccccc
Q psy8372 272 KANLKCVKS 280 (883)
Q Consensus 272 ~aGf~vv~~ 280 (883)
++||++.+.
T Consensus 237 ~aGF~V~k~ 245 (308)
T 3vyw_A 237 TLGFKVGSS 245 (308)
T ss_dssp HTTCEEEEE
T ss_pred HCCCEEEec
Confidence 999998654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.042 Score=58.37 Aligned_cols=111 Identities=18% Similarity=0.061 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcC------CCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEE
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGA------GIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGC------GtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~ 189 (883)
..++...+-......+.+++|||+|| .+|... +...+.. .|+++|+.+-. .... .+++
T Consensus 93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~-----------sda~-~~Iq 158 (344)
T 3r24_A 93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV-----------SDAD-STLI 158 (344)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB-----------CSSS-EEEE
T ss_pred HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc-----------cCCC-eEEE
Confidence 34444444333344577999999996 667642 2223443 79999987532 1111 4588
Q ss_pred ccCCCCCCCcCCCCccEEEEccccc---ccCh-----H-HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 190 VGIQDFKPEDLNIKYDVIWIQWVLM---FILD-----E-DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 190 ~d~~~~~~~~~~~~FDlVvs~~vL~---hl~d-----e-d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+|..+... .++||+|+|-++-. +... . -...++.-+.+.|+|||.|++-.+..
T Consensus 159 GD~~~~~~---~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 159 GDCATVHT---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp SCGGGEEE---SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred cccccccc---CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 88765443 25899999865321 1100 1 14466777788999999999998543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.068 Score=59.57 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=81.3
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC------CCCccEEEE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------NIKYDVIWI 209 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~FDlVvs 209 (883)
.+|||+-||.|.++..+...|+..|.++|+++.+++..+.+... ..++..|+.++..... ...+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----SLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----SEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----CceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 58999999999999988888988888999999999988887653 2567788877643211 257999998
Q ss_pred cccccccCh-------HHHHHHHHH---HHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 210 QWVLMFILD-------EDIIKFLNL---CKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 210 ~~vL~hl~d-------ed~~~~l~~---~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
..-.+.++. +....++.+ +...++| .+++.++...-. .. . .......+. .|.+.|+.+
T Consensus 78 gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~----s~-~--~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 78 GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIM----QE-K--YSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTT----CG-G--GHHHHHHHH-HHHHTTEEE
T ss_pred cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhh----cc-C--cHHHHHHHH-HHHcCCCcc
Confidence 665444421 112234444 4444567 445555433211 10 0 011234555 788889887
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.27 Score=53.19 Aligned_cols=107 Identities=6% Similarity=0.011 Sum_probs=76.9
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCc------C-CCCcc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPED------L-NIKYD 205 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~------~-~~~FD 205 (883)
..|+++|||-=..+..+.......|+-|| -|.+++..++.+... ......++.+|+.+ .... . .+.-=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 46999999987776544311113688889 589999888887643 23344678888875 2100 0 12345
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++++..+++|+++++...+++.+...+.||+.+++....
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 788899999999988999999999999999998887654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.099 Score=57.66 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=63.0
Q ss_pred cCCCccccchHHHHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCC
Q psy8372 106 GYSSISDLDIQTSNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK 183 (883)
Q Consensus 106 ~y~~~~~~~~~~~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~ 183 (883)
.|++..=.+......+++.+..... ..+++..|||||.|.|.+|..++... +.+|+++|+++.++...++.. . ..
T Consensus 29 ~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~ 105 (353)
T 1i4w_A 29 FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GS 105 (353)
T ss_dssp GGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TS
T ss_pred CCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CC
Confidence 3444444577777778777743210 00145789999999999999998863 457999999999999988876 2 34
Q ss_pred CccEEEccCCCC
Q psy8372 184 LDKCYNVGIQDF 195 (883)
Q Consensus 184 ~~~~~~~d~~~~ 195 (883)
+.+.+.+|+.++
T Consensus 106 ~l~ii~~D~l~~ 117 (353)
T 1i4w_A 106 PLQILKRDPYDW 117 (353)
T ss_dssp SCEEECSCTTCH
T ss_pred CEEEEECCccch
Confidence 568888898655
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.041 Score=58.00 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.++..|||..||+|..+..++..|. +++|+|+++.+++.|++++...
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence 5678999999999999987666654 5999999999999999998743
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.046 Score=60.16 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEEcc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWIQW 211 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs~~ 211 (883)
..+|||+-||.|.++..+...| +..|.++|+++.+++..+.+.... .++..|+.++...... ..+|+|+...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~-----~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-----CEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcccc-----ccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 3589999999999999888888 447999999999999999887532 4677888776532111 1589999876
Q ss_pred cccccCh-------HH-HHHHHHHHHHHhccCc---EEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILD-------ED-IIKFLNLCKQILNKNG---IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~d-------ed-~~~~l~~~~r~LKPGG---~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
-.+.++. ++ ...++.++.++++.-. .+++.++... . .. ..+...+.+.|++.|+.+.
T Consensus 77 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~-l---~~------~~~~~~i~~~l~~~GY~v~ 144 (343)
T 1g55_A 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKG-F---EV------SSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCSEEEEEEETT-G---GG------SHHHHHHHHHHHHTTEEEE
T ss_pred CCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcc-c---cC------HHHHHHHHHHHHHCCCeeE
Confidence 5443321 11 1234555555553211 2334443321 1 00 1234567778888888764
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.2 Score=61.12 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-----CCc-cceeccCCCCceeeEecC--HHHHHHHH--HccCCC--
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-----GAR-EFVVPTHEPNKFYSLVQS--PQQLKQLL--MVGSVD-- 417 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-----ga~-~f~v~~~~~~~~~~L~~S--pql~kq~l--~~~~~~-- 417 (883)
-..++.+.+|+.| -..||.|+.|..++....- ... .+.+...-....-.|++| |.+.+-+. ...+..
T Consensus 494 ~~~~~~~~ir~~L-~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 494 DRQHKTRTLKETL-EGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHH-HHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHH-HHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 3456778899999 4799999999999765311 112 233322211222356655 44433322 112222
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+|||.+.....| +||.|+..=+.+ .|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999965433234 999999876665 58999999999999876
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.41 E-value=0.15 Score=55.67 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.++||+.||.|.++..+...|+..|.++|+++.+++..+.+.... ...|+.++..... ..+|+|+...-.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-------~~~Di~~~~~~~~-~~~D~l~~gpPCQ 82 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI-PDHDILCAGFPCQ 82 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS-CCCSEEEEECCCT
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-------CcCCHHHcCHhhC-CCCCEEEECCCCC
Confidence 4689999999999999888889888999999999999999887532 1567776654332 2589999865444
Q ss_pred ccCh-------HH----HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 215 FILD-------ED----IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 215 hl~d-------ed----~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
.++. ++ +-.-+.++.+.++|. +++.++...- .... .......+...|++.|+.+.
T Consensus 83 ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl----~~~~---~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 83 AFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNF----ASHD---NGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGG----GTGG---GGHHHHHHHHHHHHTTBCCE
T ss_pred CcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHH----Hhcc---ccHHHHHHHHHHHhCCCEEE
Confidence 3321 11 222233344445774 4444433211 1110 11124467777788887653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.079 Score=56.39 Aligned_cols=105 Identities=13% Similarity=-0.080 Sum_probs=76.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC--CcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~FDlVvs~~v 212 (883)
+..+||+=+|+|.++..+++. ..+++.+|.++..++..++++.. ..+++++..|...... .....+||+|++-..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 457899999999999988884 47899999999999999888764 3456778888543211 011247999999887
Q ss_pred ccccChHHHHHHHHHHHH--HhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~ 244 (883)
.+.- .+...++..+.+ .+.|+|.+++--+.
T Consensus 169 Ye~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 169 YERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CCST--THHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCCC--cHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 6532 236666666665 45689999887654
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.24 Score=58.48 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCC--------C-CCCccceeccCCCCceeeEecC--HHHHHHHHH--ccCC-C
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRT--------P-GGAREFVVPTHEPNKFYSLVQS--PQQLKQLLM--VGSV-D 417 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~--------~-~ga~~f~v~~~~~~~~~~L~~S--pql~kq~l~--~~~~-~ 417 (883)
+++.+.+|+.| ...||.|+.|+.++... + +++..+.+...-....-.|++| |.+.+-+.- ..+. =
T Consensus 394 ~~~~~~ir~~l-~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~v 472 (589)
T 3l4g_B 394 NKLTELLRHDM-AAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPL 472 (589)
T ss_dssp HHHHHHHHHHH-HHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHH-HHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCce
Confidence 45678899999 47999999999997631 1 1122333322211223357766 434333211 1111 2
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
|+||+|+|||.+.....+.+|+.|+..-+.+. ++.++...+|.++..+
T Consensus 473 rlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 473 KLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998765555558999998877663 5888888888777654
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.062 Score=58.56 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAK 174 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~ 174 (883)
.+++.++|..||.|..+..++.. +.. .|+|+|.++.+++.|+
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 56889999999999999988876 333 8999999999999884
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.93 Score=47.62 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=104.0
Q ss_pred chhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHH--HHhhcccCCCCCCeEEEEcCCCChHHHHHHHh---
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLS--SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--- 155 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~--~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--- 155 (883)
.....-++..+++.....+....+..+... ........++. .+..... .-.+.|+|+||-.|..+..++..
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~--~~~~~l~~~l~~~~l~~~i~--~vpG~ivE~GV~rG~S~~~~a~~~~~ 93 (257)
T 3tos_A 18 EETETTQRLTKLLTNSPIPTEELVNNLPLF--LRRHQMTDLLSMDALYRQVL--DVPGVIMEFGVRFGRHLGTFAALRGV 93 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSCGGGGGGCGGGG--CCHHHHHHHHHHHHHHHHTT--TSCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHhHHhh--hhHHHHHHHHHHHHHHHHhh--CCCCeEEEEecccCHHHHHHHHHHHH
Confidence 445566777888888766655554433211 11222233333 2222211 33558999999999988765432
Q ss_pred ----CC-CeEEEEe-----CCH----------------------HHHHHHHH---HHhhcc--CCCccEEEccCCCCCCC
Q psy8372 156 ----HF-DKIDLLE-----QSS----------------------KFIEQAKE---EILKDC--DKLDKCYNVGIQDFKPE 198 (883)
Q Consensus 156 ----g~-~~V~gvD-----~S~----------------------~~le~A~~---~~~~~~--~~~~~~~~~d~~~~~~~ 198 (883)
+. ..|+|+| +.+ ..++...+ +....+ ..+++++.+++.+..+.
T Consensus 94 l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~ 173 (257)
T 3tos_A 94 YEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPR 173 (257)
T ss_dssp HCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHH
T ss_pred hcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHH
Confidence 22 3799998 321 11111111 111111 25678888888764332
Q ss_pred ----cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 199 ----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 199 ----~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
....+||+|+.-.-. . +.....+..+...|+|||++++.+..... +......|.+.+.+.+
T Consensus 174 ~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~GGvIv~DD~~~~~-----------w~G~~~A~~ef~~~~~ 238 (257)
T 3tos_A 174 YLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTKGSIVAFDELDNPK-----------WPGENIAMRKVLGLDH 238 (257)
T ss_dssp HHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEEEEEEEESSTTCTT-----------CTHHHHHHHHHTCTTS
T ss_pred HHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCCCcEEEEcCCCCCC-----------ChHHHHHHHHHHhhCC
Confidence 112479999987632 1 23567889999999999999998853210 1112446777777777
Q ss_pred cccccc
Q psy8372 275 LKCVKS 280 (883)
Q Consensus 275 f~vv~~ 280 (883)
.++...
T Consensus 239 ~~i~~~ 244 (257)
T 3tos_A 239 APLRLL 244 (257)
T ss_dssp SCCEEC
T ss_pred CeEEEc
Confidence 766543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.27 Score=53.68 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKI-DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V-~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs 209 (883)
...+++|+-||.|.++..+...|+ ..| .++|+++.+++..+.+.... ++..|+.++...... ..+|+++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhccCCCCEEEe
Confidence 456899999999999998888885 556 79999999999998887532 456777776543221 26899997
Q ss_pred ccccccc--C--------hHHHHHHHHHHHH-Hhcc---CcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 210 QWVLMFI--L--------DEDIIKFLNLCKQ-ILNK---NGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 210 ~~vL~hl--~--------ded~~~~l~~~~r-~LKP---GG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
..-.+.+ + ++....++.++.+ +++. .-.+++.++...- .. ......+.+.|++.|+
T Consensus 83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl----~~------~~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF----KE------SLVFKEIYNILIKNQY 152 (327)
T ss_dssp CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG----GG------SHHHHHHHHHHHHTTC
T ss_pred cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh----cC------hHHHHHHHHHHHhCCC
Confidence 6654444 1 1122356666666 5542 1345555544321 00 1234567777888887
Q ss_pred ccc
Q psy8372 276 KCV 278 (883)
Q Consensus 276 ~vv 278 (883)
.+.
T Consensus 153 ~v~ 155 (327)
T 3qv2_A 153 YIK 155 (327)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.11 Score=58.60 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred ceeeEEEecCe--EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC-cceeccHHHHHHHHhCCCCcccc
Q psy8372 776 GLHYDLVLNGN--EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH-GGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 776 ~~~~Dlv~~G~--Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh-gG~glGldRlvm~l~~~~sIRdv 852 (883)
+.+.|+.++|. |++|- -.+| |++++ ..|++. |. -.|+||||||.|++.|+++||..
T Consensus 238 gr~a~I~~~g~wlE~lG~-G~lh-P~Vl~----~~gl~~---------------~vg~afel~le~l~~~~~~i~DiR~~ 296 (415)
T 3cmq_A 238 SFEMEINFHGEWLEVLGC-GVME-QQLVN----SAGAQD---------------RIGWAFGLGLERLAMILYDIPDIRLF 296 (415)
T ss_dssp EEEEEEEETTEEEEEEEE-EEEC-HHHHH----HTTCTT---------------EEEEEEEEEHHHHHHHHSCCCCGGGG
T ss_pred ceEEEEEECCeeEEEEEE-EEeC-HHHHH----HcCCCC---------------cceEEEEEcHHHHhhhhcCcchhhhh
Confidence 36789999985 56655 4455 55443 334422 34 47899999999999999999954
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.2 Score=51.20 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-C--C----CccceeccCCCCceeeEecCH--HHHHHHHH--ccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRTP-G--G----AREFVVPTHEPNKFYSLVQSP--QQLKQLLM--VGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~--g----a~~f~v~~~~~~~~~~L~~Sp--ql~kq~l~--~~~~~-- 417 (883)
..++.+.+|+.|. ..||.||-|-.+++... . + .....+...-....-.|++|- .+.+-+.- ..+..
T Consensus 6 ~~~~~~~ir~~l~-~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLV-GCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHH-HTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHH-HCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 3467788999994 79999999999976421 0 1 111222211112233577774 33332211 11222
Q ss_pred cEEEEeeceecCCCCC------CCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRP------DRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~------~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+||+.+..+. ....|..+|-+-+++ .|+.|+...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 8999999999865321 112577777776655 35888888888888664
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.12 Score=55.53 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|--.|+||||||.|+..|+++||..
T Consensus 251 ~~~afel~le~L~m~~~~i~diR~~ 275 (294)
T 2rhq_A 251 SGFAFGMGPDRIAMLKYGIEDIRYF 275 (294)
T ss_dssp EEEEEEECHHHHHHHHHTCCCTTHH
T ss_pred eEEEEEEeHHHHHHHHcCCCHHHHH
Confidence 3568899999999999999999964
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.26 Score=50.31 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-C--C----CccceeccCCCCceeeEecCH--HHHHHHH--HccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRTP-G--G----AREFVVPTHEPNKFYSLVQSP--QQLKQLL--MVGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~--g----a~~f~v~~~~~~~~~~L~~Sp--ql~kq~l--~~~~~~-- 417 (883)
..++.+.+|+.|. ..||.||.|-.+++... . + .....+...-....-.|++|- .+.+-+. ...+..
T Consensus 6 ~~~~~~~ir~~L~-~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 6 RYKWQTVVSEQLV-GAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHH-HTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHH-HCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 3467889999994 79999999999976421 0 1 111222211113344688774 3333221 123444
Q ss_pred cEEEEeeceecCCCCC------CCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRP------DRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~------~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+||+.++... ....|..++-.-+++ .|+.++...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 8999999999765321 112577777766554 47999999999988765
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=89.22 E-value=0.69 Score=51.97 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCCChHHHHHH-HhCC--CeEEEEeCCHHHHHHHHHHHhh--c-cC-CCccEEEccCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLL-AKHF--DKIDLLEQSSKFIEQAKEEILK--D-CD-KLDKCYNVGIQ 193 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~-~~g~--~~V~gvD~S~~~le~A~~~~~~--~-~~-~~~~~~~~d~~ 193 (883)
.++..|+||||+.|..+..++ ..+. .+|+++|+++...+..+++... + .. .++.++...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 578899999999999998777 3443 4899999999999999998875 1 23 44455554444
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=1.5 Score=47.35 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=81.1
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
++|||+=||.|.++.-+-..|+..|.++|+++.+++..+.+... .++..|+.++..... ...|+++...-.+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~------~~~~~DI~~i~~~~~-~~~D~l~ggpPCQ~ 73 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------KLIKGDISKISSDEF-PKCDGIIGGPPSQS 73 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS------EEEESCGGGCCGGGS-CCCSEEECCCCGGG
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------CcccCChhhCCHhhC-CcccEEEecCCCCC
Confidence 58999999999999888888988888999999999988877642 467888888765443 36899996543332
Q ss_pred c---------ChHHHHHHHH---HHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 216 I---------LDEDIIKFLN---LCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 216 l---------~ded~~~~l~---~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+ .+ ....++. ++.+.++|. +++.++... ...... ......+...|.+.|+.+.
T Consensus 74 fS~ag~~~g~~d-~R~~L~~~~~r~i~~~~Pk--~~~~ENV~g----l~~~~~---~~~~~~i~~~l~~~GY~v~ 138 (331)
T 3ubt_Y 74 WSEGGSLRGIDD-PRGKLFYEYIRILKQKKPI--FFLAENVKG----MMAQRH---NKAVQEFIQEFDNAGYDVH 138 (331)
T ss_dssp TEETTEECCTTC-GGGHHHHHHHHHHHHHCCS--EEEEEECCG----GGGCTT---SHHHHHHHHHHHHHTEEEE
T ss_pred cCCCCCccCCCC-chhHHHHHHHHHHhccCCe--EEEeeeecc----cccccc---cchhhhhhhhhccCCcEEE
Confidence 2 12 1123333 444556784 444554321 111111 1124466777888887653
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=7.3 Score=42.39 Aligned_cols=144 Identities=12% Similarity=0.129 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhc-----------------------cCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKD-----------------------CDKLDKCY 188 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~-----------------------~~~~~~~~ 188 (883)
+...|+-+|||.=.....+...+. . .++=||. |..++.=++.+... ......++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 456899999999888877766532 2 5666775 44444333332210 12344677
Q ss_pred EccCCCCCC--------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccC
Q psy8372 189 NVGIQDFKP--------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDD 254 (883)
Q Consensus 189 ~~d~~~~~~--------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~ 254 (883)
.+|+.+... ....+.-=++++-.++.+++.++..++|+.+.+.. |+|.+++.+........ .+..
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M~~~l~~ 247 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIMIENLRR 247 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHHHHHHHH
Confidence 788765210 00013456888999999999988999999999876 45666666654322110 0000
Q ss_pred -----Ccccccccchhhhhhhhhccccccc
Q psy8372 255 -----EDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 255 -----~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
..-..+.+.+...+.|.++||..+.
T Consensus 248 ~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~ 277 (334)
T 3iei_A 248 RQCDLAGVETCKSLESQKERLLSNGWETAS 277 (334)
T ss_dssp TTCCCTTGGGGGCHHHHHHHHHTTTCSEEE
T ss_pred hCCCCcccccCCCHHHHHHHHHHcCCCcce
Confidence 0111234566777888888888653
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.38 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=22.9
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|.-.||||||||.|++.|.++||+.
T Consensus 322 ~v~afeLgLErLaMl~~gi~DIR~~ 346 (534)
T 2du3_A 322 PVMNLGLGVERLAMILYGYDDVRKM 346 (534)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred cEEEEEecHHHHHHhhcCCchhhhh
Confidence 5568999999999999999999986
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=0.68 Score=55.39 Aligned_cols=128 Identities=13% Similarity=0.021 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-----------CC--eEEEEeC---CHHHHHHHHHH-----------HhhccCC---
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-----------FD--KIDLLEQ---SSKFIEQAKEE-----------ILKDCDK--- 183 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-----------~~--~V~gvD~---S~~~le~A~~~-----------~~~~~~~--- 183 (883)
+.-+|||+|-|+|.+....+... .. +++++|. +.+.+..+-.. .......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34589999999999876554431 11 6889998 77777644332 1111111
Q ss_pred -----------CccEEEccCCCCCCCc---CCCCccEEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 184 -----------LDKCYNVGIQDFKPED---LNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 184 -----------~~~~~~~d~~~~~~~~---~~~~FDlVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
..+...+|+.+..+.. ....||+|+...--....++- -..+++.++++++|||.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 1123344443322211 125799999854222211111 2478999999999999876443
Q ss_pred cccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.....++.+.++||.+...
T Consensus 220 -------------~~~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 220 -------------SAGFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp -------------CCHHHHHHHHHHTCEEEEE
T ss_pred -------------CcHHHHHHHHhCCeEEEec
Confidence 1346788899999987643
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=88.00 E-value=0.94 Score=55.09 Aligned_cols=107 Identities=20% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-----CCCCccceeccCCCCceeeEecC--HHHHHHHH--HccC-C--C
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRT-----PGGAREFVVPTHEPNKFYSLVQS--PQQLKQLL--MVGS-V--D 417 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-----~~ga~~f~v~~~~~~~~~~L~~S--pql~kq~l--~~~~-~--~ 417 (883)
-..++.+.+|+.| ...||.|+.|-.++... +.+...+.+...-....-.|++| |.+..-+. ...+ . -
T Consensus 490 ~~~~~~~~ir~~L-~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~v 568 (785)
T 1b7y_B 490 APYRKEQRLREVL-SGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERA 568 (785)
T ss_dssp HHHHHHHHHHHHH-HHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCE
T ss_pred HHHHHHHHHHHHH-HHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCe
Confidence 3566788899999 57999999998887652 11222344432211222356655 44433321 1123 2 2
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+||| + .|+.|+..=+.+ .|+.|+...+|.++..+
T Consensus 569 rlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 569 LLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 9999999999 2 789999876666 47999999999999876
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.63 E-value=0.69 Score=49.62 Aligned_cols=74 Identities=14% Similarity=0.010 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCe--EEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC--CCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN--IKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~--V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~FDlVv 208 (883)
....+++|+-||.|.++..+...|+.. |.++|+++.+++..+.+... ..++..|+.++...... +.+|+++
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----KIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----CEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----CceeCCChHHccHHHhcccCCcCEEE
Confidence 456799999999999998888888884 68999999998887777542 14677888876543211 3689999
Q ss_pred Ecc
Q psy8372 209 IQW 211 (883)
Q Consensus 209 s~~ 211 (883)
...
T Consensus 89 ggp 91 (295)
T 2qrv_A 89 GGS 91 (295)
T ss_dssp ECC
T ss_pred ecC
Confidence 754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.45 E-value=1.1 Score=49.30 Aligned_cols=97 Identities=16% Similarity=0.005 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccE
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDV 206 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDl 206 (883)
..++.+||-+|||. |..+..+++. |...|+++|.++..++.+++.... ..+...-.++.. ...++.+|+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------HVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC------EEecCCccCHHHHHHHhcCCCCcE
Confidence 46788999999876 6666666654 554799999999999988765321 122211111100 001136999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+-... . ...+..+.++|+|||++++..
T Consensus 262 vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTG-----S---PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSC-----C---HHHHHHHHHTEEEEEEEEECC
T ss_pred EEECCC-----C---HHHHHHHHHHHhcCCEEEEeC
Confidence 976432 1 246788899999999988765
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=86.62 E-value=0.53 Score=51.44 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=55.8
Q ss_pred CeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEEccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWIQWV 212 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs~~v 212 (883)
.+++|+-||.|.++..+...|+ ..|.++|+++.+++..+.+.... .++..|+.++.....+ ..+|+++...-
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~-----~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPET-----NLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-----CEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCC-----ceeccccccCCHHHhccCCCCEEEecCC
Confidence 4899999999999988888886 46889999999999888877532 3566777766542211 25899887554
Q ss_pred cccc
Q psy8372 213 LMFI 216 (883)
Q Consensus 213 L~hl 216 (883)
.+.+
T Consensus 79 CQ~f 82 (333)
T 4h0n_A 79 CQPF 82 (333)
T ss_dssp CCCS
T ss_pred Ccch
Confidence 4433
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.45 E-value=1.5 Score=48.70 Aligned_cols=101 Identities=13% Similarity=-0.066 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC-CC----CcCCCCc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KP----EDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~-~~----~~~~~~F 204 (883)
..++.+||-+|||. |..+..+++. |..+|+++|.|+..++.+++... ..+...-.++ .. ......+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~i~~~~~~~~~~~~~~~~~g~g~ 255 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF-------ETIDLRNSAPLRDQIDQILGKPEV 255 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC-------EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEcCCCcchHHHHHHHHhCCCCC
Confidence 46788999999976 7777766664 55479999999998888764321 1222211111 00 0001269
Q ss_pred cEEEEcccccc---------cChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMF---------ILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~h---------l~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+-...-.. .+ ....+..+.++|++||++++..
T Consensus 256 Dvvid~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 256 DCGVDAVGFEAHGLGDEANTET---PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEEECSCTTCBCSGGGTTSBC---TTHHHHHHHHHEEEEEEEECCS
T ss_pred CEEEECCCCccccccccccccc---cHHHHHHHHHHHhcCCEEEEec
Confidence 99986543221 11 1246788899999999987654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.50 E-value=0.59 Score=51.94 Aligned_cols=102 Identities=14% Similarity=-0.026 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC-CC----CCcCCCCc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FK----PEDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~-~~----~~~~~~~F 204 (883)
..++.+||-+|||. |.++..+++. |...|+++|.++.-++.|++... ..+...-.+ +. .......+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~i~~~~~~~~~~~v~~~t~g~g~ 255 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-------EIADLSLDTPLHEQIAALLGEPEV 255 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC-------cEEccCCcchHHHHHHHHhCCCCC
Confidence 46788999999866 6667666665 45479999999999988865322 112111111 00 00001369
Q ss_pred cEEEEccccc---------ccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLM---------FILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~---------hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+-...-. |.++ ....+..+.++|++||++++..
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 256 DCAVDAVGFEARGHGHEGAKHEA--PATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBC--TTHHHHHHHHHEEEEEEEEECS
T ss_pred CEEEECCCCcccccccccccccc--hHHHHHHHHHHHhcCCEEEEec
Confidence 9998643321 1212 3357888999999999987754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=85.31 E-value=0.55 Score=51.41 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc---CCCCCC---CcCCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDFKP---EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d---~~~~~~---~~~~~~ 203 (883)
..++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++.... ..+..+ ..++.. ...+..
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------LVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------EEEcCcccccchHHHHHHHHhCCC
Confidence 46788999999875 6666666664 444799999999988888753221 122211 000000 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+-... . ...+..+.++|+|||++++..
T Consensus 243 ~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 243 PEVTIECTG-----A---EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp CSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECS
T ss_pred CCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEe
Confidence 899986432 1 135677889999999988764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=84.81 E-value=1.2 Score=48.11 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVv 208 (883)
..++.+||-.|||. |..+..+++....+|+++|.++.-++.+++.... ..+...-.++... ...+.+|+|+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE------VAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC------EEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 45788999999975 7777777765444799999999999888764321 1122111111000 0013688887
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-... -...+..+.++|+|||++++..
T Consensus 238 d~~g--------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 238 VTAV--------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ESSC--------CHHHHHHHHHHEEEEEEEEECS
T ss_pred EeCC--------CHHHHHHHHHHhccCCEEEEeC
Confidence 6432 1246788899999999998764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=84.74 E-value=0.68 Score=51.04 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CC---cCCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PE---DLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~---~~~~~ 203 (883)
..++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++..... .+...-.++. .. ..++.
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~------vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA------TVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE------EECTTSSCHHHHHHSTTSSSTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE------EECCCCcCHHHHHHhhhhccCCC
Confidence 35788999999865 5566656554 5547999999999998887754321 1111111100 00 11247
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+|+-... . ...+..+.++|++||++++...
T Consensus 254 ~Dvvid~~G-----~---~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 254 VDVVIECAG-----V---AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEEEEECSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCEEEECCC-----C---HHHHHHHHHHhccCCEEEEEec
Confidence 999986432 1 2467888999999999988653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=83.98 E-value=1.4 Score=52.72 Aligned_cols=128 Identities=11% Similarity=-0.010 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-----------CC--eEEEEeC---CHHHHHHHHHH-----------HhhccC----
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-----------FD--KIDLLEQ---SSKFIEQAKEE-----------ILKDCD---- 182 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-----------~~--~V~gvD~---S~~~le~A~~~-----------~~~~~~---- 182 (883)
+.-+|||+|.|+|.....++... .. +++.+|. +...+..|-.. ......
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34689999999999877665421 11 6888998 55555443221 111100
Q ss_pred ----------CCccEEEccCCCCCCCc---CCCCccEEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 183 ----------KLDKCYNVGIQDFKPED---LNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 183 ----------~~~~~~~~d~~~~~~~~---~~~~FDlVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
-..+++.+|+.+..+.- ....+|.++....-..-.++- -..++..++++++|||.+....
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------ 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 02244555654432211 125799998854221111100 1478999999999999866433
Q ss_pred cccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.....++.+.++||.+...
T Consensus 212 -------------~~~~vr~~l~~aGf~~~~~ 230 (689)
T 3pvc_A 212 -------------AAGFVRRGLQQAGFNVTKV 230 (689)
T ss_dssp -------------CCHHHHHHHHHTTCEEEEE
T ss_pred -------------CcHHHHHHHHhCCeEEEec
Confidence 1346788899999987654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=83.40 E-value=1.4 Score=47.83 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.... ..+ .+...+ ...+|+|+-.
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~v~-~~~~~~-----~~~~D~vid~ 241 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK------HFY-TDPKQC-----KEELDFIIST 241 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS------EEE-SSGGGC-----CSCEEEEEEC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC------eec-CCHHHH-----hcCCCEEEEC
Confidence 36788999999875 6666666655434799999999988888763221 122 222221 1279999864
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..-. ..+..+.++|+|||++++..
T Consensus 242 ~g~~--------~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 242 IPTH--------YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CCSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred CCcH--------HHHHHHHHHHhcCCEEEEEC
Confidence 3211 24566888999999998865
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=83.38 E-value=0.76 Score=50.13 Aligned_cols=98 Identities=14% Similarity=-0.039 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.+++..... .+...-.++.. ......+|
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD------IINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE------EECGGGSCHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce------EEcCCCcCHHHHHHHHcCCCCCC
Confidence 46788999999875 6666666655 4437999999999888887754321 12111111100 00013699
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-...- ...+..+.++|+|||+++....
T Consensus 238 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 238 KVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp EEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence 99864321 1367778899999999987653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.56 E-value=1.6 Score=47.33 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~ 179 (883)
.++..|||.-||+|..+..+...|. ..+|+|+++..++.|++++..
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 5688999999999999986666654 599999999999999988764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.34 E-value=2.7 Score=45.64 Aligned_cols=97 Identities=19% Similarity=0.068 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCC---CcC----CC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKP---EDL----NI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~---~~~----~~ 202 (883)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.... ..+...- .++.. ... ..
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------VTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC------EEEcCcccccHHHHHHHHhccccCC
Confidence 35788999999864 5666666654333599999999988888753221 1222110 11100 000 13
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+.... . ...+..+.++|+|||+++...
T Consensus 240 g~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 240 LPNVTIDCSG-----N---EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCEEEECCC-----C---HHHHHHHHHHHhcCCEEEEEe
Confidence 6999986432 1 135677889999999988764
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=81.83 E-value=3.6 Score=47.07 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc---------------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------------- 199 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--------------- 199 (883)
..+++|+=||.|.++.-+...|+..|.++|+++.+++.-+.+.... .....+..|+.++....
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 5689999999999998887778878899999999988888776321 12245667776553210
Q ss_pred CCCCccEEEEcccccccChH-----------------HHHHHHHHHHH---HhccCcEEEEEecccCCCcccccCCcccc
Q psy8372 200 LNIKYDVIWIQWVLMFILDE-----------------DIIKFLNLCKQ---ILNKNGIIIIKDNVASGVKNEYDDEDSSV 259 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~de-----------------d~~~~l~~~~r---~LKPGG~lvi~~~~~~~~~~~~~~~~~~~ 259 (883)
....+|+++...-.+.++.. ....++.++.+ .++| .+++.++...- .... .
T Consensus 166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP--k~fvlENV~gl----~s~~---~ 236 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP--AMFVLENVKNL----KSHD---K 236 (482)
T ss_dssp HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC--SEEEEEEETTT----TTGG---G
T ss_pred cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC--cEEEEeCcHHH----hccc---C
Confidence 01358999976544443211 01123444444 4466 45555544321 1111 1
Q ss_pred cccchhhhhhhhhcccccc
Q psy8372 260 VRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv 278 (883)
......+...|++.|+.+.
T Consensus 237 g~~f~~i~~~L~~lGY~v~ 255 (482)
T 3me5_A 237 GKTFRIIMQTLDELGYDVA 255 (482)
T ss_dssp GHHHHHHHHHHHHTTEEET
T ss_pred CcHHHHHHHHHhcCCcEEE
Confidence 1234577788889998875
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=80.96 E-value=0.63 Score=50.60 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||-+|+|. |..+..+++. +..+|+++|.++.-++.+++.... ..+..+- ++.. ......+|
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~------~~i~~~~-~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD------AAVKSGA-GAADAIRELTGGQGAT 241 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS------EEEECST-THHHHHHHHHGGGCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC------EEEcCCC-cHHHHHHHHhCCCCCe
Confidence 35788999999865 6666666654 356899999999999888764321 1222111 1100 00012689
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-... . ...+..+.++|++||++++...
T Consensus 242 ~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 242 AVFDFVG-----A---QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp EEEESSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECCC-----C---HHHHHHHHHHHhcCCEEEEECC
Confidence 9876432 1 2467889999999999987653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.79 E-value=1.6 Score=47.94 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=59.9
Q ss_pred CCCeEEEEc-C-CCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCCCCccEE
Q psy8372 134 GKTRVLDVG-A-GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVG-C-GtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~FDlV 207 (883)
++.+||=+| + |.|..+..+++. +..+|+++|.++.-++.+++..... .+... .++. .....+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~------vi~~~-~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH------VIDHS-KPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE------EECTT-SCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE------EEeCC-CCHHHHHHHhcCCCceEE
Confidence 677999998 4 347777777775 5557999999999888887632211 11110 0000 00012479998
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+-... -...+..+.++|++||++++.
T Consensus 244 id~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 244 FSTTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 76432 124678889999999999875
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=80.18 E-value=2.5 Score=45.73 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSS---KFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~---~~le~A~~~~~~ 179 (883)
.++..|||.-||+|..+..+...+. ..+|+|+++ ..++.|++++..
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 5688999999999999987776665 499999999 999999998764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.02 E-value=1 Score=48.86 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCC-cCCCCccEEE
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPE-DLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~~FDlVv 208 (883)
++.+||-+|+|. |..+..+++.. ..+|+++|.|+.-++.+++..... .+...- .+.... .....+|+|+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~~~~~g~g~D~vi 243 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY------VSEMKDAESLINKLTDGLGASIAI 243 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSE------EECHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCE------EeccccchHHHHHhhcCCCccEEE
Confidence 688999999964 55565565543 336999999999988887643211 111100 000000 0013699998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-... . ...++.+.++|+|||++++..
T Consensus 244 d~~g-----~---~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 244 DLVG-----T---EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp ESSC-----C---HHHHHHHHHHEEEEEEEEECC
T ss_pred ECCC-----C---hHHHHHHHHHhhcCCEEEEeC
Confidence 6532 1 136778889999999988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 883 | ||||
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 3e-40 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 5e-33 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 3e-38 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 1e-34 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 1e-31 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 1e-27 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 2e-26 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 2e-27 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 7e-22 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 5e-27 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 3e-23 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 6e-27 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 4e-25 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 7e-25 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 3e-24 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 6e-24 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 4e-11 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 9e-11 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 2e-10 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-07 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 3e-07 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 8e-07 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-07 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-06 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 3e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 2e-05 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 4e-05 | |
| d1c0aa2 | 133 | d.74.4.1 (A:288-420) Prokaryotic AspRS, insert dom | 5e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 9e-05 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 1e-04 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 1e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 3e-04 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 6e-04 | |
| d1l0wa2 | 120 | d.74.4.1 (A:295-414) Prokaryotic AspRS, insert dom | 7e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 7e-04 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 7e-04 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 0.002 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 0.002 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.003 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.003 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.003 |
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 149 bits (378), Expect = 3e-40
Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 6/195 (3%)
Query: 320 IKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR 379
+ + + E+ RLK+RYLD R PEM L+ R+K R F+ F+++ETP L K
Sbjct: 4 LDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDD-HGFLDIETPMLTKA 62
Query: 380 TPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPE 438
TP GAR+++VP+ KFY+L QSPQ KQLLM+ DRY+QI +C+RDE R DRQPE
Sbjct: 63 TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPE 122
Query: 439 FTQLDIELSFTTRDDVMRLIEELLCYCL----NIPTRTFSRISYNDAISLYGSDKPDLRY 494
FTQ+D+E SF T V ++E L+ + + F +++ +A YGSDKPDLR
Sbjct: 123 FTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRD 182
Query: 495 DCKIMIAIKEQPPWP 509
+ K P
Sbjct: 183 ESKWAPLWVIDFPMF 197
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 128 bits (323), Expect = 5e-33
Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 723 EFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLV 782
+ + ++ WV+DFP+F G L + HHPFT P L + P YD+V
Sbjct: 179 DLRDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMV 238
Query: 783 LNGNEIGGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDR 838
+NG E+GGGS+RIH+ ++Q+++ L I ++ A KYG PPH G+A G+DR
Sbjct: 239 INGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDR 298
Query: 839 LMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883
L +L GT +IRDVIAFPK ++ AP +++
Sbjct: 299 LTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 343
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 144 bits (364), Expect = 3e-38
Identities = 78/159 (49%), Positives = 96/159 (60%), Gaps = 5/159 (3%)
Query: 730 FSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEI 788
F WVVDFPL + HHPFT PHPED LL +P VR L YDLVLNG E+
Sbjct: 194 FRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEV 253
Query: 789 GGGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILC 844
GGGSIRIH LQ + L I + ++A +YG PPHGGIA G+DRL++++
Sbjct: 254 GGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMT 313
Query: 845 GTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883
G+ SIR+VIAFPK GKD L+GAP +PE + L
Sbjct: 314 GSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLM 352
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 133 bits (335), Expect = 1e-34
Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%)
Query: 314 VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVET 373
V+ + + +A E+LRLK+RYLD R MQ NLR R + + +FL FV+VET
Sbjct: 6 VDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDR-EGFVQVET 64
Query: 374 PTLFKRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTR 432
P L K TP GAR+ V HEP FY+L QSPQ KQ+LMV +DRYFQIARC+RDE R
Sbjct: 65 PFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR 124
Query: 433 PDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL-----NIPTRTFSRISYNDAISLYGS 487
DRQP+FTQLD+E+SF +DV+ L E L+ + F R+SY +A+ YGS
Sbjct: 125 ADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGS 184
Query: 488 DKPDLRYDCKIMIAIKEQP 506
DKPDLR + + + + P
Sbjct: 185 DKPDLRREGFRFLWVVDFP 203
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 122 bits (306), Expect = 1e-31
Identities = 73/212 (34%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Query: 79 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV 138
D + Y + EY+ VP T+ G+L G + D+DI+ S F+ G +R
Sbjct: 43 YDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFI-----ASLPGHGTSRA 97
Query: 139 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 198
LD GAGIGRI+K LL K + DLLE +E+AK E+ ++ P
Sbjct: 98 LDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPN 157
Query: 199 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 258
YD+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS
Sbjct: 158 ----TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSS 213
Query: 259 VVRSLPQFCLLFSKANLKCVKSEKGEFSPMDL 290
+ RS + LF+++ ++ VK E P DL
Sbjct: 214 LTRSDIHYKRLFNESGVRVVKEAFQEEWPTDL 245
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 111 bits (279), Expect = 1e-27
Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 21/153 (13%)
Query: 704 LGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPED 763
LG + + + L +V +P + PF ED
Sbjct: 173 LGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYP-----------RSVRPFYTYPEED 221
Query: 764 EHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFK 823
S +DL+ G EI G RIH E L ++ + ++ FK
Sbjct: 222 GTTRS----------FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFK 271
Query: 824 YGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
YG PPHGG A+G +RL L G ++R AFP
Sbjct: 272 YGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 108 bits (271), Expect = 2e-26
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
Query: 335 RYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEP 394
RY+ R + + L+ ++ + R +L +DF E+ TP + + G +
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDR-QDFTEIFTPKVVRAGAEGGSGLFGVDY-F 59
Query: 395 NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-D 452
K L QSPQ KQ +MVG +R +++A +R E R E+ LD+E+ F +
Sbjct: 60 EKRAYLAQSPQLYKQ-IMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEE 118
Query: 453 DVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIM 499
D+MRL E LL L T D I L G+ P D +
Sbjct: 119 DLMRLEEALLAEMLEEALNT-----AGDEIRLLGATWPSFPQDIPRL 160
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (281), Expect = 2e-27
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 12/191 (6%)
Query: 328 EDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREF 387
D RL +R +D R Q R ++ RE+LAT + F EV TP L G
Sbjct: 24 LDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLAT-KKFTEVHTPKLLGAPSEGGSSV 82
Query: 388 VVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIEL 446
T+ K Y L QSPQ KQ L+V +R ++I +R E++ R EFT LD+E+
Sbjct: 83 FEVTYFKGKAY-LAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEM 141
Query: 447 SFTTR-DDVMRLIEELLCYCLNIPTRTFS--------RISYNDAISLYGSDKPDLRYDCK 497
+F +V+ + EL + + + F+ + + L Y
Sbjct: 142 AFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEG 201
Query: 498 IMIAIKEQPPW 508
I +
Sbjct: 202 IEMLRAAGKEI 212
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.1 bits (238), Expect = 7e-22
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 751 SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESIL--HFL 808
+T P P + YD + G EI G+ RIH L + + H L
Sbjct: 247 EIRPFYTMPDPANPKY---------SNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 809 NIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
+ E L+ F YGCPPH G +G++R++ ++IR FP+
Sbjct: 298 SPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 346
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 110 bits (276), Expect = 5e-27
Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 3/189 (1%)
Query: 316 IPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375
+P KA+ D RL +R++D R PE+ + RS R+F F+E+ TP
Sbjct: 2 LPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHE-NGFIEIHTPK 60
Query: 376 LFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDR 435
+ G E + + +SPQ K+++M +DR ++IA +R E R
Sbjct: 61 IIATATEGGTELFPMKYFEEDAFL-AESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTR 119
Query: 436 QPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYD 495
D+ + L + + I + ++P L +
Sbjct: 120 HLNEAWSIDSEMAFIEDEEEV-MSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFP 178
Query: 496 CKIMIAIKE 504
E
Sbjct: 179 RVSYDKALE 187
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 99.6 bits (247), Expect = 3e-23
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 753 HHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIET 812
+ ++ P + P R +DL G EI G R H ++ + +
Sbjct: 226 YQYPSEAKPFYIMKYDNKPEICR--AFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNP 283
Query: 813 SSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
S + ++AF+YG PPHGG LG +RL+ + +IR+VI FP+
Sbjct: 284 ESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPR 328
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 110 bits (276), Expect = 6e-27
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 328 EDLRLKHRYLDF-RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA-- 384
+++R + RYLD + + RSK L R+F+ R F+EVETP + + PGGA
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETPMM-QVIPGGASA 59
Query: 385 REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDI 444
R F+ + + L +P+ + L+VG +R F+I R +R+E PEFT +++
Sbjct: 60 RPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMEL 119
Query: 445 ELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMI 500
+++ D++ L E + ++ KP + + I
Sbjct: 120 YMAYADYHDLIELTES---LFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAI 172
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 105 bits (262), Expect = 4e-25
Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 9/144 (6%)
Query: 722 LEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDL 781
+ KS+ + +V +F L P ++ ++
Sbjct: 197 IGITVEKSWGLGRIVTE-IFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEF 255
Query: 782 VLNGNEIGGGSIRIHSSELQESILHFLNIETSS--------LQHMIQAFKYGCPPHGGIA 833
+ G EIG G ++ +E Q ++ + + A +YG PP G+
Sbjct: 256 FIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLG 315
Query: 834 LGIDRLMSILCGTQSIRDVIAFPK 857
+GIDR++ + + +IRDVI FP
Sbjct: 316 IGIDRMIMLFTNSHTIRDVILFPA 339
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (251), Expect = 7e-25
Identities = 75/210 (35%), Positives = 113/210 (53%), Gaps = 3/210 (1%)
Query: 85 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAG 144
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAG
Sbjct: 11 FYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 70
Query: 145 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 204
IGRI+K LL F ++D+++ + F+ QAK + ++ ++ + Y
Sbjct: 71 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFC--CGLQDFTPEPDSY 128
Query: 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 264
DVIWIQWV+ + D+ + +FL CK L NGII+IKDN+A DD DSSV R L
Sbjct: 129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILDDVDSSVCRDLD 187
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDW 294
+ A L + E+ E P +++ +
Sbjct: 188 VVRRIICSAGLSLLAEERQENLPDEIYHVY 217
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 3e-24
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 1/147 (0%)
Query: 715 KVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEV 774
K + EF K F +F + SD + PF + E
Sbjct: 142 KAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFW 201
Query: 775 RGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYG-CPPHGGIA 833
R L E+ G R E + + + S + ++ K G P G
Sbjct: 202 RNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAG 261
Query: 834 LGIDRLMSILCGTQSIRDVIAFPKGFG 860
+G++RL+ + G + I +V FP+ G
Sbjct: 262 IGVERLVRFIVGAKHIAEVQPFPRIPG 288
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (251), Expect = 6e-24
Identities = 48/220 (21%), Positives = 75/220 (34%), Gaps = 28/220 (12%)
Query: 337 LDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP----TLFKRTPGGAREFVVP-- 390
++ E+ L ++K L +F F + P A E + P
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVK-EGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 391 THEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPD---RQPEFTQLDIELS 447
L S KQL + + + F ++ R ES + D EFTQLD E+
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 448 FTTRDDVMRLIEELLCYCLN----------IPTRTFSRISYNDAISLYGSD--------K 489
+D+MRLIE L+ T+ F Y++ + +GSD +
Sbjct: 122 RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEE 181
Query: 490 PDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRR 529
P + +E + Y LP GE R
Sbjct: 182 PFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGER 221
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 58.1 bits (140), Expect = 4e-11
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQ 57
R+H G+LR + V + V L GW+ +R +F LRD G VQ++
Sbjct: 3 RTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS 54
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 57.4 bits (138), Expect = 9e-11
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQVPNIYR 63
R+H + + V + GW+ + F +RD G VQ+ P +V
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELF 60
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 56.2 bits (135), Expect = 2e-10
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQVPNIYRTS 65
R+ CG LRLS V + VTLCGW+ +R +F +RD G VQV + + S
Sbjct: 2 RTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLAS 61
Query: 66 TLAS 69
L +
Sbjct: 62 ELRN 65
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
R LD+G G GR S YL A +D + E I + ++ +
Sbjct: 33 RTLDLGCGNGRNSLYLAANGYDVTA--WDKNPASMANLERIKAAEGLDNLQTDLVDLNTL 90
Query: 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ +YD I V+MF+ + I + ++ G +I
Sbjct: 91 TF--DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 50.1 bits (119), Expect = 3e-07
Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 24/190 (12%)
Query: 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175
+ + G + ++DVG G GR + +++K+ K I
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL--------IKGINFDLP 114
Query: 176 EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 235
+++++ L +VG F + D + ++ V DE I+FL+ C + L+ N
Sbjct: 115 QVIENAPPLSGIEHVGGDMFAS---VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN 171
Query: 236 GIIIIKDNVASGVKNEYDDED-------------SSVVRSLPQFCLLFSKANLKCVKSEK 282
G +II + + N ++ R+ Q+ L + +
Sbjct: 172 GKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 231
Query: 283 GEFSPMDLWE 292
F+ + + E
Sbjct: 232 RAFNSLGVME 241
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 48.6 bits (114), Expect = 8e-07
Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 13/133 (9%)
Query: 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI- 177
N+ L + PG RVL G + + L+ + E S +E+ E
Sbjct: 6 NKDLQQYWSSLNVVPGA-RVLVPLCGKSQDMSW-LSGQGYHVVGAELSEAAVERYFTERG 63
Query: 178 ----------LKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNL 227
K G + + ++ + + +++
Sbjct: 64 EQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQH 123
Query: 228 CKQILNKNGIIII 240
+ ++ + ++
Sbjct: 124 LEALMPQACSGLL 136
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 48.8 bits (115), Expect = 8e-07
Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 16/167 (9%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
RVLD+GAG G + + + + ++ + + +E A + + + +
Sbjct: 19 RVLDIGAGAGHTALA-FSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------- 249
+ +D+I ++ D+ K + ++L ++G ++ D+ A
Sbjct: 78 FP--DDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 133
Query: 250 --NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDW 294
N D SL ++ +FS L +K ++ ++ W
Sbjct: 134 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK--WNLPIQYDSW 178
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
+ VLDV G G ++ A K+ + + ++ A+ + +
Sbjct: 15 GNE-EVLDVATGGGHVANA-FAPFVKKVVAFDLTEDILKVAR----AFIEGNGHQQVEYV 68
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
Q + + + + F++ ++L K G +++ DN
Sbjct: 69 QGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 3/122 (2%)
Query: 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 178
N F+ + + + G VLD+G G G + ++ + I A+
Sbjct: 10 NNFIKACLIRLYTKRGD-SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR 68
Query: 179 KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNG 236
+ + + DL ++DVI Q+ + E + + L G
Sbjct: 69 NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG 128
Query: 237 II 238
Sbjct: 129 YF 130
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 33/232 (14%), Positives = 64/232 (27%), Gaps = 23/232 (9%)
Query: 49 VQVIVPNHQVPNIYRTSTLASLPIFPYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYS 108
+V V + R + P + E + E +D +S
Sbjct: 35 AEVYAEVLGVKTVLRKGHIHGETRKPDY-ELLYGSDTVTVHVENGIKY--KLDVAKIMFS 91
Query: 109 SISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSK 168
++ + + V+D+ AGIG +S + K+ +E+
Sbjct: 92 P----ANVKERVRMAKVAKPDE------LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPY 141
Query: 169 FIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLC 228
+ E I D+ + D + D I + +F+
Sbjct: 142 TFKFLVENI-HLNKVEDRM-SAYNMDNRDFPGENIADRI------LMGYVVRTHEFIPKA 193
Query: 229 KQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280
I II + V K + + R ++ K N +K
Sbjct: 194 LSIAKDGAIIHYHNTVPE--KLMPREPFETFKRITKEYGYDVEKLNELKIKR 243
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 45.6 bits (107), Expect = 1e-05
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 4/129 (3%)
Query: 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 173
D+ ++ ++S L ++D G G G + L+ + S A
Sbjct: 7 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 66
Query: 174 KEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILN 233
+ L D + G LN KYD+ L+ L +
Sbjct: 67 EARELFRLLPYDSEFLEGDATEIE--LNDKYDIAICHAFLLH--MTTPETMLQKMIHSVK 122
Query: 234 KNGIIIIKD 242
K G II +
Sbjct: 123 KGGKIICFE 131
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.3 bits (106), Expect = 2e-05
Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 21/177 (11%)
Query: 100 IDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK 159
DG + D ++ + G RVLDV G G S L +
Sbjct: 22 ADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIM-LVEEGFS 80
Query: 160 IDLLEQSSKFIEQAKEEILKDCDKLD------KCYNVGIQDFKPEDLNIKYDVIWIQWVL 213
+ ++ S K ++ A +E + + N D + VI +
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 214 MFILD-----EDIIKFLNLCKQILNKNGII---------IIKDNVASGVKNEYDDED 256
+ D + L ++ G++ I+ A KN Y D
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSD 197
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
RVLD+ AG G ++ +++ L+E++ K ++ I+ + +
Sbjct: 17 RVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA 76
Query: 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ L ++D++++ I+ L +L++ +++
Sbjct: 77 IDCLTGRFDLVFLDPPYAKETIVATIEALAAKN-LLSEQVMVVC 119
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 4e-05
Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS 166
+S+ + ++ L + + + ++L +G G G I +L+K + + +
Sbjct: 13 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 72
Query: 167 SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI--------------KYDVIWIQWV 212
++ +E + E+I K + + K N+ F K+D I + +
Sbjct: 73 NEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 132
Query: 213 LMFILDEDIIKFLNLCKQILNKNGIIII 240
L ++ +DI L +L N ++I
Sbjct: 133 LYYV--KDIPATLKFFHSLLGTNAKMLI 158
|
| >d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Escherichia coli [TaxId: 562]
Score = 41.9 bits (98), Expect = 5e-05
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 603 NFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD---S 659
F V L +P T K+I EY N K ++ +KV +
Sbjct: 16 EFAVFAGPANDPKGRV-AALRVPGGASLTRKQIDEYGNFVKIYGAK-GLAYIKVNERAKG 73
Query: 660 LEWTNK-LTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710
LE N + K L +E+ ++ ++GD+I ++ V +G +R +
Sbjct: 74 LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLK 125
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (101), Expect = 5e-05
Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 14/169 (8%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
PG R+LD+G+G G + H ++ SS F QAK + + +
Sbjct: 33 PGT-RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIH 89
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD------NVAS 246
D N K DV L Q L GI++I +
Sbjct: 90 NDAAGYVANEKCDVAACVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATE 147
Query: 247 GVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWG 295
+ +S +LP F V+ + + W+ +
Sbjct: 148 EIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM---VLADQEGWDRYE 193
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 9e-05
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Query: 89 VTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRI 148
+ E Y+ + D + ++ F+ ++ + + RVLD+ G G
Sbjct: 1 MYELYTLLAEYYDTIYRRRIE----RVKAEIDFVEEIFKEDAKREVR-RVLDLACGTGIP 55
Query: 149 SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208
+ L + ++ + L ++ ++ +V F ++D +
Sbjct: 56 TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-----KNEFDAVT 110
Query: 209 IQWVLMFILDE-DIIKFLNLCKQILNKNGIIII 240
+ + + DE D+ K + + L G+ I
Sbjct: 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 1 SKTNVYTTRSHTCGALRLSDVDKTVTLCGWLQNQRVD----MFALLRDAYGQVQVIVPNH 56
R D DK V + N R F LR +Q +V +
Sbjct: 15 DSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKAN 74
Query: 57 QVPNIY 62
+ I
Sbjct: 75 KEGTIS 80
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 39.8 bits (93), Expect = 1e-04
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 19 SDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIY 62
+ V + V L G+L +R F LLRD G VQV+ ++P
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPE 56
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 28/195 (14%)
Query: 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
+L++G+ G + L +HF+ I +E S + I +L
Sbjct: 16 TPFFRPGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAIS-------HAQGRLKDGIT 67
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLN-LCKQILNKNGIIII-------- 240
F+ L +YD I + VL I +D + L + L + G + +
Sbjct: 68 YIHSRFEDAQLPRRYDNIVLTHVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNANAV 125
Query: 241 -------KDNVASGVKNEYDDEDSSVVR--SLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291
++ + +L S+A L+ F + +
Sbjct: 126 SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKALANF 185
Query: 292 EDWGLLSKEVIASNI 306
+ +L ++++
Sbjct: 186 QWDQILQTDILSKEY 200
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 3e-04
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 103 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 162
ML D + + +S++ + K VLDVG+G G + + K+
Sbjct: 11 MLK--------DEVRTLTYRNSMFHNRHLFKDKV-VLDVGSGTGILCMFAAKAGARKVIG 61
Query: 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE-DI 221
+E SS K D + +++ E K D+I +W+ + E +
Sbjct: 62 IECSSISDYAVKIVKANKLDHVVTIIKGKVEEV--ELPVEKVDIIISEWMGYCLFYESML 119
Query: 222 IKFLNLCKQILNKNGIII 239
L+ + L +G+I
Sbjct: 120 NTVLHARDKWLAPDGLIF 137
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 4e-04
Identities = 41/251 (16%), Positives = 75/251 (29%), Gaps = 16/251 (6%)
Query: 107 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 158
+SS I + +Y K VLDVG G G +S + AK
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKV-VLDVGCGTGILSMF-AAKAGA 58
Query: 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218
K L S+ + QA + I + + G + + +I + +
Sbjct: 59 KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFE 118
Query: 219 EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278
+ L + L K G + + D + F + C+
Sbjct: 119 SMLDSVLYAKNKYLAKGGSVY----PDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCM 174
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLK--HRY 336
K + +++ + L+S+ +I + ++ F K Y
Sbjct: 175 KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGY 234
Query: 337 LDFRFPEMQHN 347
D F + HN
Sbjct: 235 FDIYFEKNCHN 245
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 40.4 bits (93), Expect = 6e-04
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 3/128 (2%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
+++ LD+ G G +++ L K + ++ E L
Sbjct: 32 VENNLVFDDYLDLACGTGNLTENLCPKFKNTWA---VDLSQEMLSEAENKFRSQGLKPRL 88
Query: 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248
+ + I +D+ K+ L + G+ I N +
Sbjct: 89 ACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL 148
Query: 249 KNEYDDED 256
+ D
Sbjct: 149 SQVLGNND 156
|
| >d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 38.0 bits (88), Expect = 7e-04
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 613 SSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672
E V + L LPK L + K++ E + +AK+ ++ +V++ + K L
Sbjct: 21 QEAESV-KALALPKAL--SRKEVAELEEVAKRHKAQ-GLAWARVEEGGFSGG-VAKFLEP 75
Query: 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710
E GD ++ G ++ + LG +R
Sbjct: 76 -VREALLQATEARPGDTLLFVAGPRKVAATALGAVRLR 112
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (93), Expect = 7e-04
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 11/144 (7%)
Query: 107 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 158
+ S I + +++ K K VLDVG G G +S +
Sbjct: 4 FDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDK-IVLDVGCGTGILSMFAAKHGAK 62
Query: 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218
+ ++ SS + L ++D K D+I +W+ F+L
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFLLY 120
Query: 219 EDIIKFLNLCKQILNKNGIIIIKD 242
E ++ + + G +I D
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPD 144
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 39.7 bits (92), Expect = 7e-04
Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 26/177 (14%)
Query: 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI 177
S +L G ++DVG G G +K + K I + ++
Sbjct: 64 SKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF--------PKLKCIVFDRPQV 115
Query: 178 LKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL---NK 234
+++ + VG F D + ++++L D+D ++ L CK+ + K
Sbjct: 116 VENLSGSNNLTYVGGDMFTS---IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGK 172
Query: 235 NGIIIIKDNVASGVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVK 279
G + I D V K+E ++ R+ ++ LF +A + K
Sbjct: 173 RGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 0.001
Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 8/158 (5%)
Query: 93 YSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYL 152
Y++ + + N ++ +TS ++ + + K +D+G+G+G++ +
Sbjct: 111 YNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL-FVDLGSGVGQVVLQV 169
Query: 153 LAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKL---DKCYNVGIQDFKPEDLNIKYD 205
A K ++ + +K+ E E K Y + DF E+ +
Sbjct: 170 AAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 229
Query: 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ +V F ++ L + + G I+
Sbjct: 230 NTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 0.002
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 17/143 (11%)
Query: 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 173
+ +Q L RV G K+ A + +E S I++
Sbjct: 25 HQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKW-FADRGHSVVGVEISELGIQEF 83
Query: 174 KEEILKDCDKLDKCYNVGIQDFKPEDLNIKY----------------DVIWIQWVLMFIL 217
E + G + FK NI D+IW + L+ I
Sbjct: 84 FTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAIN 143
Query: 218 DEDIIKFLNLCKQILNKNGIIII 240
D + + +L K ++
Sbjct: 144 PGDRKCYADTMFSLLGKKFQYLL 166
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 13/157 (8%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
VLDVG G G + + + + + + ++ A+ + +
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVV--- 135
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 252
+ E L K D I + +VL+ D D ++ L C + L G I+I + +
Sbjct: 136 EGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN 195
Query: 253 DDEDS----------SVVRSLPQFCLLFSKANLKCVK 279
+ +R+ ++ L + A L +
Sbjct: 196 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 232
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 38.4 bits (88), Expect = 0.003
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
VLDVG G G + + + L + + E+A+ G
Sbjct: 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD 139
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 252
+ DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 140 FFKPL---PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 196
Query: 253 DDED-----------SSVVRSLPQFCLLFSKANLKCVK 279
VR+ + L A L
Sbjct: 197 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.8 bits (86), Expect = 0.003
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 91 EYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISK 150
EYY P D Y S I+T L K + +VLD+ G+G S
Sbjct: 4 EYYRVFPTYTDINSQEYRS----RIETLEPLL------MKYMKKRGKVLDLACGVGGFSF 53
Query: 151 YLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210
L F+ + + + + ++ + + K + +D +
Sbjct: 54 LLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD----ARKLSFEDKTFDYVIFI 109
Query: 211 WVLMFILDEDIIKFLNLCKQILNKNGIIII 240
++ ++ + +++L +G I+
Sbjct: 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/187 (10%), Positives = 43/187 (22%), Gaps = 34/187 (18%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAK-------------- 174
++D+G+G F I L + + + E+ +
Sbjct: 46 GPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTP 105
Query: 175 ------------------EEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL--M 214
EE L+ K +V + + + D + +
Sbjct: 106 AVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 165
Query: 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274
+ L +L G ++ + E S V + A
Sbjct: 166 CCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAG 225
Query: 275 LKCVKSE 281
+
Sbjct: 226 FDIEQLL 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 883 | |||
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.93 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.93 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.72 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.7 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.7 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.68 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.68 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.67 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.67 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.67 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.66 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.65 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.63 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.62 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.62 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.61 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.61 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.57 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.56 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.52 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.51 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.49 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.48 | |
| d1l0wa2 | 120 | Prokaryotic AspRS, insert domain {Thermus thermoph | 99.42 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.42 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.41 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.39 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.39 | |
| d1c0aa2 | 133 | Prokaryotic AspRS, insert domain {Escherichia coli | 99.39 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.28 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.28 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.28 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.26 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.24 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.23 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.22 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.21 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.19 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.18 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.17 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.17 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.12 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.11 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.07 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.07 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.06 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.04 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.03 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.02 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.02 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.01 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.99 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.97 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.89 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.87 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.85 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.83 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.83 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.79 | |
| d2d6fc2 | 125 | Glutamyl-tRNA(gln) amidotransferase subunit E, Gat | 98.75 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.73 | |
| d1zq1c2 | 131 | Glutamyl-tRNA(gln) amidotransferase subunit E, Gat | 98.7 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.67 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.67 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.65 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.59 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.54 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.5 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.44 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 98.44 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.41 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.41 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.27 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.26 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.23 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.2 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.18 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.12 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.06 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 98.04 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 98.02 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.02 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.96 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.95 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.93 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.84 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.82 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.79 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.76 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.75 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.66 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.63 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.61 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 97.6 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.6 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 97.6 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 97.54 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 97.49 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.48 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.41 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.41 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.34 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.32 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.29 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.29 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.24 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.98 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.98 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 96.93 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.89 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 96.84 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.83 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.77 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 96.63 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.44 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.4 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.01 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.48 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.35 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.17 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.04 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.2 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.86 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.64 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 90.32 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 89.84 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.66 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.5 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.47 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 88.83 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.43 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.17 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 87.68 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.47 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 85.28 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.93 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.48 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.82 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.59 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 83.36 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 82.99 |
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-73 Score=634.82 Aligned_cols=333 Identities=42% Similarity=0.733 Sum_probs=272.8
Q ss_pred CCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCcc-ceeccCCC
Q psy8372 316 IPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGARE-FVVPTHEP 394 (883)
Q Consensus 316 lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~-f~v~~~~~ 394 (883)
+|++. +...++++|++|||||||++..+++|++||+|++++|+|| .++||+||+||+|++++++|+.. |...+...
T Consensus 2 lP~~~--~~~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff-~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~ 78 (346)
T d1c0aa3 2 LPLDS--NHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFM-DDHGFLDIETPMLTKATPEGARDYLVPSRVHK 78 (346)
T ss_dssp CSSCT--TSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSSBCCCSSSSCCCEEECSSST
T ss_pred CCCCC--CCCCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccCCCCCccccccccccccCC
Confidence 46543 3456789999999999999999999999999999999999 68999999999999888887765 55545556
Q ss_pred CceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccC----C
Q psy8372 395 NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP----T 470 (883)
Q Consensus 395 ~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~----~ 470 (883)
++.+||+||||+|+|+++++|++||||||||||+|+++++|||||||||||++|++++++|+++|+|+++++..+ .
T Consensus 79 ~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~~ 158 (346)
T d1c0aa3 79 GKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDL 158 (346)
T ss_dssp TCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CccccCCcCHHHHHHHHhhcCCCceEEEeeeccccccCchhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCCcC
Confidence 888999999999999999999999999999999999999999999999999999999999999999999998762 3
Q ss_pred CCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccch
Q psy8372 471 RTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSY 550 (883)
Q Consensus 471 ~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (883)
.+|++++|.||+.+|+.+.++++....+..
T Consensus 159 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~-------------------------------------------------- 188 (346)
T d1c0aa3 159 GDFPVMTFAEAERRYGSDKPDLRDESKWAP-------------------------------------------------- 188 (346)
T ss_dssp CSCCEEEHHHHHHHHSCSSCCTTCSSCCCE--------------------------------------------------
T ss_pred CccceeeHHHHHHHhcccccchhhHhhhhh--------------------------------------------------
Confidence 589999999999999988776443211000
Q ss_pred hhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCcccc
Q psy8372 551 FIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDS 630 (883)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (883)
T Consensus 189 -------------------------------------------------------------------------------- 188 (346)
T d1c0aa3 189 -------------------------------------------------------------------------------- 188 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHH
Q psy8372 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710 (883)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~ 710 (883)
T Consensus 189 -------------------------------------------------------------------------------- 188 (346)
T d1c0aa3 189 -------------------------------------------------------------------------------- 188 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEee
Q psy8372 711 SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGG 790 (883)
Q Consensus 711 ~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~ 790 (883)
.|..|+|.++...++.+...++|+..|.+........+|....+++|||+++|+||+|
T Consensus 189 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~a~~fdl~~~G~El~n 246 (346)
T d1c0aa3 189 ----------------------LWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGG 246 (346)
T ss_dssp ----------------------EEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEE
T ss_pred ----------------------hccccccccchhcccceeeeEeeccccchhhHHHhccCCccccccccccCcCCEEEec
Confidence 0111111110000011111122222222222222233444455799999999999999
Q ss_pred eeeccCCHHHHHHHHHhCCCCc----ccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCCCCCC
Q psy8372 791 GSIRIHSSELQESILHFLNIET----SSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLS 866 (883)
Q Consensus 791 Gs~R~~~~~~q~~~~~~~~~~~----~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~~~~~ 866 (883)
||+|+||+++|+++|+..|+++ +.|+|||+|++||||||||||||+|||+|+|+|++||||||+||||+++.|+|+
T Consensus 247 G~~rl~d~~~~~~r~~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~~Irdvi~FPRt~~~~~~~~ 326 (346)
T d1c0aa3 247 GSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMT 326 (346)
T ss_dssp EEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCBTTT
T ss_pred hhhhhchHHHHHHHHHHhCccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCCcHHheecCCCCCCCCCccc
Confidence 9999999999999999999987 568999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhhcccCC
Q psy8372 867 GAPCDIPEAERNYYNLK 883 (883)
Q Consensus 867 ~~p~~~~~~~~~~~~~~ 883 (883)
+||+.++++||++|||+
T Consensus 327 ~~p~~~~~~~~~~~~~~ 343 (346)
T d1c0aa3 327 EAPSFANPTALAELSIQ 343 (346)
T ss_dssp TBSCCCCHHHHHHTTCC
T ss_pred CCCCCCCHHHHHhhCeE
Confidence 99999999999999985
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=7.3e-72 Score=622.17 Aligned_cols=325 Identities=52% Similarity=0.897 Sum_probs=272.4
Q ss_pred CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCcc-ceeccCCCCceeeEec
Q psy8372 324 NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGARE-FVVPTHEPNKFYSLVQ 402 (883)
Q Consensus 324 ~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~-f~v~~~~~~~~~~L~~ 402 (883)
..+++++||++||||||++.++++|++||+|++++|+|| .++||+||+||+|++++++|+.. |.+.....+..+||+|
T Consensus 16 ~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff-~~~gfiEV~TP~L~~~~~eg~~~~~~~~~~~~~~~~yL~~ 94 (356)
T d1l0wa3 16 KEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFL-DREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQ 94 (356)
T ss_dssp CCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCS
T ss_pred cccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccccCCCcccccchhhhhcccccccCCCc
Confidence 356778999999999999999999999999999999999 68999999999999888887776 5544446688899999
Q ss_pred CHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc-----CCCCceeee
Q psy8372 403 SPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI-----PTRTFSRIS 477 (883)
Q Consensus 403 Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~-----~~~~f~rit 477 (883)
|||+|+|+++++|++|||+|+||||+|+++++|||||||||||++|++++++|+++|+||+++++. .+.||+|++
T Consensus 95 Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~~~~~f~r~~ 174 (356)
T d1l0wa3 95 SPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLS 174 (356)
T ss_dssp CSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEE
T ss_pred ChhHHHHHhhhcccCcEEEEeccccccccCCcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999864 667999999
Q ss_pred hHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhcc
Q psy8372 478 YNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCY 557 (883)
Q Consensus 478 y~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (883)
|.+|+.+|+.+.|+++-.. +
T Consensus 175 ~~~a~~~~~~~~~~l~~~~------------------------------------~------------------------ 194 (356)
T d1l0wa3 175 YEEAMERYGSDKPDLRREG------------------------------------F------------------------ 194 (356)
T ss_dssp HHHHHHHHSSSSCCCSCCS------------------------------------C------------------------
T ss_pred HHhhHHHHhcCcHhHHHHh------------------------------------h------------------------
Confidence 9999999987655432100 0
Q ss_pred CCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHH
Q psy8372 558 QGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITE 637 (883)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (883)
T Consensus 195 -------------------------------------------------------------------------------- 194 (356)
T d1l0wa3 195 -------------------------------------------------------------------------------- 194 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhccc
Q psy8372 638 YKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVK 717 (883)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~ 717 (883)
T Consensus 195 -------------------------------------------------------------------------------- 194 (356)
T d1l0wa3 195 -------------------------------------------------------------------------------- 194 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccC
Q psy8372 718 NTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIH 796 (883)
Q Consensus 718 ~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~ 796 (883)
++.|++|+|+.++.++ ..+...++||...++.+......++....+.+|||+++|+||+|||+|+|
T Consensus 195 -------------~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~a~~FdL~~~G~ElanG~~r~~ 261 (356)
T d1l0wa3 195 -------------RFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIH 261 (356)
T ss_dssp -------------CEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCC
T ss_pred -------------hhhhccccccccccchhcceeeeeCCcccCChhhhchhhcCCCcceeeeeecccCCEEeeccEEEeC
Confidence 0112222222211111 11111234444444444444445555566899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCC
Q psy8372 797 SSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDI 872 (883)
Q Consensus 797 ~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~ 872 (883)
|+++|+++|+..|++++ .++|||+|++||+|||||||||+|||+|+++|++||||||+|||+++..||++++|+++
T Consensus 262 d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdvi~FPR~~~r~~p~~~~~~~~ 341 (356)
T d1l0wa3 262 DPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPV 341 (356)
T ss_dssp CHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCBTTTTBSEEC
T ss_pred cHHHHHHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHHHHHHcCCCcHHheecCCCCCCCCCccCCCCCCC
Confidence 99999999998888764 48899999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhcccC
Q psy8372 873 PEAERNYYNL 882 (883)
Q Consensus 873 ~~~~~~~~~~ 882 (883)
+++|++|+||
T Consensus 342 ~~~~~~~~~~ 351 (356)
T d1l0wa3 342 PEEQLRELGL 351 (356)
T ss_dssp CHHHHHHHTE
T ss_pred CHHHHHhcCe
Confidence 9999999997
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=6.8e-67 Score=580.25 Aligned_cols=317 Identities=25% Similarity=0.439 Sum_probs=250.6
Q ss_pred chhhhcccccccc-cChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC-CccceeccCCCCceeeEecCH
Q psy8372 327 KEDLRLKHRYLDF-RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-AREFVVPTHEPNKFYSLVQSP 404 (883)
Q Consensus 327 ~~~~rl~~r~ldl-r~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g-a~~f~v~~~~~~~~~~L~~Sp 404 (883)
++++||+|||||| |++.+++++++||+|++++|+|| .++||+||+||+|+.+.++| +..|.+++...+..+||+|||
T Consensus 1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff-~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Sp 79 (342)
T d1e1oa2 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP 79 (342)
T ss_dssp CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCS
T ss_pred ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhh
Confidence 4789999999999 77999999999999999999999 68999999999997765554 467999877778889999999
Q ss_pred HHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc---------------C
Q psy8372 405 QQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI---------------P 469 (883)
Q Consensus 405 ql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~---------------~ 469 (883)
|+|||++|++|++||||||||||+|+++++|+||||||||||+|+|++|+|+++|+|+++++.. +
T Consensus 80 ql~~k~~l~~g~~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1e1oa2 80 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDF 159 (342)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEET
T ss_pred HHHHHHHhhhcccceeeeccccccccccccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchhccc
Confidence 9999999999999999999999999999888899999999999999999999999999998754 4
Q ss_pred CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q psy8372 470 TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSS 549 (883)
Q Consensus 470 ~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (883)
..||+|+++.+|++.|....+ +.+ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-------~~~----~-------------------------------------------- 184 (342)
T d1e1oa2 160 GKPFEKLTMREAIKKYRPETD-------MAD----L-------------------------------------------- 184 (342)
T ss_dssp TSCCEEEEHHHHHHHHSTTCC-------GGG----G--------------------------------------------
T ss_pred CCchhhhhHHHHHHHHhcccc-------Hhh----h--------------------------------------------
Confidence 678999999999988643110 000 0
Q ss_pred hhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccc
Q psy8372 550 YFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLD 629 (883)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (883)
T Consensus 185 -------------------------------------------------------------------------------- 184 (342)
T d1e1oa2 185 -------------------------------------------------------------------------------- 184 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHH
Q psy8372 630 STNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRS 709 (883)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~ 709 (883)
...+....+++. .+.+. ...+.+|.+..
T Consensus 185 ---~~~~~~~~~~~~-------------------------------------~~~~~------------~~~~~~~~~~~ 212 (342)
T d1e1oa2 185 ---DNFDAAKALAES-------------------------------------IGITV------------EKSWGLGRIVT 212 (342)
T ss_dssp ---GSHHHHHHHHHH-------------------------------------TTCCC------------CTTCCHHHHHH
T ss_pred ---hhhHHHHHHHHH-------------------------------------cCCCc------------ccccchhHHHH
Confidence 000011111111 11110 00122344444
Q ss_pred HhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEe
Q psy8372 710 ESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIG 789 (883)
Q Consensus 710 ~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~ 789 (883)
++. +..++..+.. ++||+|||.. ..||++++++|..+ +++|||++||+||+
T Consensus 213 ~~~----~~~~~~~~~~-----p~fi~~~P~~-----------~~~f~~~~~~~~~~---------~~~fdl~~~g~El~ 263 (342)
T d1e1oa2 213 EIF----DEVAEAHLIQ-----PTFITEYPAE-----------VSPLARRNDVNPEI---------TDRFEFFIGGREIG 263 (342)
T ss_dssp HHH----HHHTGGGCCS-----CEEEECCBGG-----------GCTTBCBCSSCTTB---------BSEEEEEETTEEEE
T ss_pred HHH----HHhhHhhccC-----CCcCCCCccc-----------cChhhccccccchh---------hhhhhcccCCEeec
Confidence 444 1223334444 4999999987 79999987766543 58999999999999
Q ss_pred eeeeccCCHHHHHHHHHh------CCCCccc--HHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 790 GGSIRIHSSELQESILHF------LNIETSS--LQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 790 ~Gs~R~~~~~~q~~~~~~------~~~~~~~--~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||+|+||+++|.++|+. .+.++.. ++|||+|++||+|||||||||+|||+|+|+|++||||||+|||+++
T Consensus 264 ~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh~G~glG~dRlvm~l~g~~nIrdvi~FPr~r~ 342 (342)
T d1e1oa2 264 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 342 (342)
T ss_dssp EEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred CCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCccchhHHHHHHHHHHhCCCcHHHhccCCCCCC
Confidence 999999999999999943 2333332 4899999999999999999999999999999999999999999863
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-66 Score=578.14 Aligned_cols=326 Identities=28% Similarity=0.471 Sum_probs=244.5
Q ss_pred cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCC-ccceeccCCCCceeeEecCH
Q psy8372 326 AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA-REFVVPTHEPNKFYSLVQSP 404 (883)
Q Consensus 326 ~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga-~~f~v~~~~~~~~~~L~~Sp 404 (883)
.+.|+|++|||||||++..+++|++||+|++++|+|| .++||+||+||+|+++.++|+ ..|.+.+. +..+||+|||
T Consensus 22 ~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff-~~~gflEV~TPiL~~~~~eg~~~~f~~~~~--~~~~yL~~Sp 98 (353)
T d1eova2 22 VNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYL-ATKKFTEVHTPKLLGAPSEGGSSVFEVTYF--KGKAYLAQSP 98 (353)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEESSCSSSSSCCCEEEET--TEEEEECSCT
T ss_pred CCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccCCCCCcchhccccceee--CCcceeccch
Confidence 5789999999999999999999999999999999999 689999999999988876655 56888765 5677899999
Q ss_pred HHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHHHHHHHHHHHHHhccCCCCceeeehHHHH
Q psy8372 405 QQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLNIPTRTFSRISYNDAI 482 (883)
Q Consensus 405 ql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dvm~~~E~li~~i~~~~~~~f~rity~ea~ 482 (883)
|+|+|++|++|++||||||||||||+++++|| |||||||||++|.+ ++++|+++|+|+++++..+.. .+...+
T Consensus 99 el~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~-----~~~~~~ 173 (353)
T d1eova2 99 QFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPK-----RFAHEI 173 (353)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHH-----HCHHHH
T ss_pred hhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccch-----hhhhhh
Confidence 99999999999999999999999999999766 99999999999998 899999999999998765321 111111
Q ss_pred HHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCC
Q psy8372 483 SLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRS 562 (883)
Q Consensus 483 ~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (883)
+..... . ++.. +. .+.
T Consensus 174 ~~~~~~----------------~-~~~~----------------------~~------------------------~~~- 189 (353)
T d1eova2 174 ELVRKQ----------------Y-PVEE----------------------FK------------------------LPK- 189 (353)
T ss_dssp HHHHHH----------------S-CCCC----------------------CC------------------------CCT-
T ss_pred hhhccc----------------C-ccce----------------------ee------------------------ccC-
Confidence 111100 0 0000 00 000
Q ss_pred CccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHH
Q psy8372 563 VGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLA 642 (883)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (883)
... +.+...++..+++
T Consensus 190 -~~~---------------------------------------------------------------~~ri~~~ea~~~l 205 (353)
T d1eova2 190 -DGK---------------------------------------------------------------MVRLTYKEGIEML 205 (353)
T ss_dssp -TCC---------------------------------------------------------------CEEEEHHHHHHHH
T ss_pred -CCc---------------------------------------------------------------eeeeehHhhHHHH
Confidence 000 0000111112222
Q ss_pred HHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCc
Q psy8372 643 KKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPL 722 (883)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~ 722 (883)
++. +.+.+|.. .........++++..+.
T Consensus 206 ~~~-------------------------------------~~~~~~~~----~~~~~~~~~l~~~i~~~----------- 233 (353)
T d1eova2 206 RAA-------------------------------------GKEIGDFE----DLSTENEKFLGKLVRDK----------- 233 (353)
T ss_dssp HHT-------------------------------------TCCCCTTC----CCCHHHHHHHHHHHHHH-----------
T ss_pred HHH-------------------------------------hhhccccc----ccchhhHHHHHHHHHhh-----------
Confidence 211 00111100 00112233455443322
Q ss_pred ccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHH
Q psy8372 723 EFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQ 801 (883)
Q Consensus 723 ~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q 801 (883)
+.. .++||+|||.. .+|| +++++++..+ +++|||++||+||+|||+|+||+++|
T Consensus 234 -~~~----~~~~i~~~P~~-----------~~p~~~~~~~~~~~~---------a~rfeL~~~G~El~nG~~e~~d~~~~ 288 (353)
T d1eova2 234 -YDT----DFYILDKFPLE-----------IRPFYTMPDPANPKY---------SNSYDFFMRGEEILSGAQRIHDHALL 288 (353)
T ss_dssp -SCC----SEEEEECCBGG-----------GSCTTBCBCSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHH
T ss_pred -ccC----CcccccCCcHH-----------HhhhhhCCChhhhhh---------hhceeeeeeceEEcceecccCCHHHH
Confidence 222 36899999986 7898 6767766554 58999999999999999999999999
Q ss_pred HHHHHhCCCCcc--cHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCCCC
Q psy8372 802 ESILHFLNIETS--SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDH 864 (883)
Q Consensus 802 ~~~~~~~~~~~~--~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~~~ 864 (883)
+++|+..|++++ .++|||+|++||+|||||||||+|||+|+|+|++||||||+|||+++.-+|
T Consensus 289 ~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~m~l~~~~~Irdvi~FPr~~~~~~p 353 (353)
T d1eova2 289 QERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 353 (353)
T ss_dssp HHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCCC
T ss_pred HHHHHHcCCChhhhHHHHHHHHhHcCCCCCceeeeHHHHHHHHHhCCCcHHheeCCCCCCCCCCC
Confidence 999999999876 489999999999999999999999999999999999999999999876553
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=7.2e-63 Score=546.49 Aligned_cols=313 Identities=27% Similarity=0.507 Sum_probs=251.9
Q ss_pred CCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC-CccceeccCC
Q psy8372 315 NIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-AREFVVPTHE 393 (883)
Q Consensus 315 ~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g-a~~f~v~~~~ 393 (883)
|+|+++......++++|+++||||||++.++++|++||+|+++||+|| .++||+||+||+|+.+.++| +..|.+.+.
T Consensus 1 plp~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff-~~~gflEV~TPil~~~~~~~~~~~f~~~~~- 78 (335)
T d1b8aa2 1 PLPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFF-HENGFIEIHTPKIIATATEGGTELFPMKYF- 78 (335)
T ss_dssp SCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEESCCCSSSSSCCEEEET-
T ss_pred CCCCCcCCCCCCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccCccCCchhhhhcccccc-
Confidence 688888888888999999999999999999999999999999999999 68999999999998876654 456888764
Q ss_pred CCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHHHHHHHHHHHHHHHhcc---
Q psy8372 394 PNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRDDVMRLIEELLCYCLNI--- 468 (883)
Q Consensus 394 ~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~--- 468 (883)
++.+||++|||+|+|+++++|++|||||+||||+|++++.|| +||||+|+|+++. +++++|+++|+++..+.+.
T Consensus 79 -~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~ 157 (335)
T d1b8aa2 79 -EEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVRE 157 (335)
T ss_dssp -TEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999998766 8999998888884 7999999999999887654
Q ss_pred ---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy8372 469 ---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSF 533 (883)
Q Consensus 469 ---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 533 (883)
...||+|++|.||++.++....+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~r~~~~e~~~~l~~~~~~-----------------------------------------~ 196 (335)
T d1b8aa2 158 HNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKE-----------------------------------------I 196 (335)
T ss_dssp HCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCC-----------------------------------------C
T ss_pred cccchhhhhccccccCCCCcccccHHHHHHHHHhhccc-----------------------------------------c
Confidence 23466666666666654321000 0
Q ss_pred cccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccC
Q psy8372 534 FGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKS 613 (883)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (883)
.
T Consensus 197 ~------------------------------------------------------------------------------- 197 (335)
T d1b8aa2 197 P------------------------------------------------------------------------------- 197 (335)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEe
Q psy8372 614 SGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVS 693 (883)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 693 (883)
.++.
T Consensus 198 ------------------------------------------------------------------------~~~~---- 201 (335)
T d1b8aa2 198 ------------------------------------------------------------------------WGED---- 201 (335)
T ss_dssp ------------------------------------------------------------------------TTSC----
T ss_pred ------------------------------------------------------------------------cccc----
Confidence 0000
Q ss_pred cCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCC-CCChhhhccCCC
Q psy8372 694 WGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPH-PEDEHLLSSNPL 772 (883)
Q Consensus 694 ~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~-~~d~~~~~~~~~ 772 (883)
........++..... .... .++||+|||.. ..||++.. +++...
T Consensus 202 --~~~~~~~~~~~~~~~------------~~~~----~~~fi~~~P~~-----------~~pl~~~~~~~~~~~------ 246 (335)
T d1b8aa2 202 --IDTEGERLLGKYMME------------NENA----PLYFLYQYPSE-----------AKPFYIMKYDNKPEI------ 246 (335)
T ss_dssp --CCHHHHHHHHHHHHH------------HHCC----SEEEEESCBGG-----------GSCTTBCEETTEEEE------
T ss_pred --cccccccceeeeeec------------cccc----ccceeecChHH-----------hhhccccccCCCcHH------
Confidence 000000111111111 1111 24799999986 67886543 232222
Q ss_pred CccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 773 EVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 773 ~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
+++|||+++|+||+|||+|+||+++|+++|+..|++++.++|||+|++||+|||||||||+|||+|+|+|++|||||
T Consensus 247 ---a~rfel~~~G~El~nG~~e~~~~~~~~~r~~~~~~~~e~~e~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~~IrdV 323 (335)
T d1b8aa2 247 ---CRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREV 323 (335)
T ss_dssp ---ESEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred ---HHhhccccCceeeecccchhcCHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCceeeeHHHHHHHHHhCCCcHHhe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCC
Q psy8372 853 IAFPKGFGGKDH 864 (883)
Q Consensus 853 i~FPk~~~~~~~ 864 (883)
|+|||+++..+|
T Consensus 324 i~FPr~~~~~~p 335 (335)
T d1b8aa2 324 ILFPRDRRRLTP 335 (335)
T ss_dssp SSSCCBTTBCCC
T ss_pred EcCCCCCCCCCC
Confidence 999999987765
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=1.2e-59 Score=513.74 Aligned_cols=301 Identities=31% Similarity=0.494 Sum_probs=197.0
Q ss_pred cccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCc-cceeccCCCCceeeEecCHHHHHHHHH
Q psy8372 334 HRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAR-EFVVPTHEPNKFYSLVQSPQQLKQLLM 412 (883)
Q Consensus 334 ~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~-~f~v~~~~~~~~~~L~~Spql~kq~l~ 412 (883)
|||||||++.++++|++||+|++++|+|| .++||+||+||+|++++++|+. .|.+.+. ++.+||++|||+|||+ |
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff-~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~--~~~~~L~~Spel~k~l-l 76 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYL-DRQDFTEIFTPKVVRAGAEGGSGLFGVDYF--EKRAYLAQSPQLYKQI-M 76 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC------------------------------CHHHHHH-H
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccCCCCCCCCCceECCccc--ccchhccccHHHHHHH-h
Confidence 79999999999999999999999999999 6899999999999988877654 4766654 5678999999999995 6
Q ss_pred ccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCC
Q psy8372 413 VGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKP 490 (883)
Q Consensus 413 ~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~ 490 (883)
++|++||||||||||+|++.++|| +||||+|||+++. +++++|+++|+++++++..+.. ++...+..++.+++
T Consensus 77 ~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~-----~~~~~~~~~~~~~~ 151 (304)
T d1n9wa2 77 VGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALN-----TAGDEIRLLGATWP 151 (304)
T ss_dssp HHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHH-----HSHHHHHHTTCCCC
T ss_pred hcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhhhcccee
Confidence 888999999999999999887655 9999999999986 5789999999999998765211 22233333333221
Q ss_pred CccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchh
Q psy8372 491 DLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIF 570 (883)
Q Consensus 491 d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (883)
+.... +
T Consensus 152 ~~~~~-------------------------------------~------------------------------------- 157 (304)
T d1n9wa2 152 SFPQD-------------------------------------I------------------------------------- 157 (304)
T ss_dssp CCSSS-------------------------------------C-------------------------------------
T ss_pred cccch-------------------------------------h-------------------------------------
Confidence 10000 0
Q ss_pred hhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCc
Q psy8372 571 HIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVK 650 (883)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (883)
.+....++.++.+..
T Consensus 158 ------------------------------------------------------------~~~~~~e~~~~l~~~----- 172 (304)
T d1n9wa2 158 ------------------------------------------------------------PRLTHAEAKRILKEE----- 172 (304)
T ss_dssp ------------------------------------------------------------CEEEHHHHHHHHHHT-----
T ss_pred ------------------------------------------------------------hhhhHHHHHHHHHHH-----
Confidence 000111122222211
Q ss_pred ceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCc
Q psy8372 651 MSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSF 730 (883)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~ 730 (883)
++.+.++. ........++.+..+ .+ ..
T Consensus 173 -------------------------------~~~~~~~~------~~~~~~~~l~~~~~~------------~~----~~ 199 (304)
T d1n9wa2 173 -------------------------------LGYPVGQD------LSEEAERLLGEYAKE------------RW----GS 199 (304)
T ss_dssp -------------------------------SCCCCCSS------CCHHHHHHHHHHHHH------------HT----CC
T ss_pred -------------------------------hCCCcCCC------ccHHHHHHHHHHHHh------------hc----CC
Confidence 11111110 011222333332221 11 11
Q ss_pred cEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCC
Q psy8372 731 SIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNI 810 (883)
Q Consensus 731 ~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~ 810 (883)
.++||+|||.. .+||++...+| .. +++|||++||+||+|||+|+||+++|+++|+..|+
T Consensus 200 ~~~fi~~~P~~-----------~~p~~~~~~~~-~~---------a~rfel~~~G~El~nG~~e~~d~~~l~~r~~~~~~ 258 (304)
T d1n9wa2 200 DWLFVTRYPRS-----------VRPFYTYPEED-GT---------TRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGM 258 (304)
T ss_dssp SEEEEECCBGG-----------GSCTTBCBCTT-SB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTC
T ss_pred ceEEEeCChhh-----------hCchhhccccc-ce---------eehhccccCcEEEeccccccCCHHHHHHHHHHcCC
Confidence 46999999986 79997754333 22 58999999999999999999999999999999999
Q ss_pred CcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCC
Q psy8372 811 ETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856 (883)
Q Consensus 811 ~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FP 856 (883)
+++.++|||+|++||+|||||+|||+|||+|+++|.+||||||+||
T Consensus 259 ~~e~~~~yl~al~~G~PP~~G~glGiDRL~m~l~g~~~Irdv~~FP 304 (304)
T d1n9wa2 259 DPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304 (304)
T ss_dssp CGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCceeehHHHHHHHHHhCCCcHHheecCC
Confidence 9999999999999999999999999999999999999999999999
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-59 Score=506.74 Aligned_cols=268 Identities=24% Similarity=0.363 Sum_probs=216.6
Q ss_pred cccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC----CCccceeccCCCCceeeEecCHHHH
Q psy8372 336 YLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG----GAREFVVPTHEPNKFYSLVQSPQQL 407 (883)
Q Consensus 336 ~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~----ga~~f~v~~~~~~~~~~L~~Spql~ 407 (883)
-||||++.++++|++||+|++++|+|| .++||+||+||+|++.+ +. ++..|.++++ ++.+||+||||+|
T Consensus 2 ~l~l~~~~~~~il~~Rs~i~~~iR~ff-~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~--~~~~yL~~SPel~ 78 (293)
T d1nnha_ 2 AVEIISREISPTLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIY--GVKMRLTHSMILH 78 (293)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEET--TEEEEECSCSHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEcCCcccccCCCCCCccccCccccccccCC--CceeecccChhhh
Confidence 389999999999999999999999999 68999999999997643 22 2345666654 6889999999999
Q ss_pred HHHHHccCCCcEEEEeeceecCCCC--CC-CCcceecccccccCCCHHHHHHHHHHHHHHHhcc----------CCCCce
Q psy8372 408 KQLLMVGSVDRYFQIARCYRDESTR--PD-RQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI----------PTRTFS 474 (883)
Q Consensus 408 kq~l~~~~~~rvf~I~~~FR~E~~~--~~-r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~----------~~~~f~ 474 (883)
+|++|++|++||||||||||||+.+ +. |+|||||||||++|.|++|+|+++|+|++++++. ...+|+
T Consensus 79 lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~ 158 (293)
T d1nnha_ 79 KQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFE 158 (293)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCE
T ss_pred HHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCcccccCCccc
Confidence 9999999999999999999999754 33 4599999999999999999999999999999764 123444
Q ss_pred eeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhh
Q psy8372 475 RISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIRE 554 (883)
Q Consensus 475 rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (883)
|++|.||++.+|.|.
T Consensus 159 ~~~~~eal~~~g~d~----------------------------------------------------------------- 173 (293)
T d1nnha_ 159 VFEYSEVLEEFGSDE----------------------------------------------------------------- 173 (293)
T ss_dssp EEEHHHHHHHTSSHH-----------------------------------------------------------------
T ss_pred cccHHhhhcccCccc-----------------------------------------------------------------
Confidence 444444444432210
Q ss_pred hccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhh
Q psy8372 555 YCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKK 634 (883)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (883)
T Consensus 174 -------------------------------------------------------------------------------- 173 (293)
T d1nnha_ 174 -------------------------------------------------------------------------------- 173 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhh
Q psy8372 635 ITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKI 714 (883)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~ 714 (883)
.. .
T Consensus 174 ----------------------------------------------------------------~~----~--------- 176 (293)
T d1nnha_ 174 ----------------------------------------------------------------KA----S--------- 176 (293)
T ss_dssp ----------------------------------------------------------------HH----H---------
T ss_pred ----------------------------------------------------------------cc----c---------
Confidence 00 0
Q ss_pred cccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeec
Q psy8372 715 KVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIR 794 (883)
Q Consensus 715 ~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R 794 (883)
+ .+..| +|++|||.. |++...+ ....+.+|++.++|.||+||++|
T Consensus 177 ---~----~~~~p-----~~~~~~p~~--------------f~~~~~~---------~~~~~~~~~l~~~g~Elang~~e 221 (293)
T d1nnha_ 177 ---Q----EMEEP-----FWIINIPRE--------------FYDREVD---------GFWRNYDLILPYGYGEVASGGER 221 (293)
T ss_dssp ---H----HCSSC-----EEEECCCCC--------------TTBCEET---------TEECEEEEEETTTTEEEEEEEEB
T ss_pred ---c----ccccc-----eeccccchh--------------hcccccc---------cccccceeEecccCccccccccc
Confidence 0 12223 899999853 4332211 22235778888899999999999
Q ss_pred cCCHHHHHHHHHhCCCCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCCC
Q psy8372 795 IHSSELQESILHFLNIETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKD 863 (883)
Q Consensus 795 ~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~~ 863 (883)
+|||++|+++|+..|++++.++|||+|++|| ||||||||||+|||+|+++|++|||||++|||+++-.-
T Consensus 222 l~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~~G~glGiDRL~m~l~g~~~Irdv~~FPR~~g~~~ 291 (293)
T d1nnha_ 222 EWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 291 (293)
T ss_dssp CCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred ccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCeEeehHHHHHHHHhCCCcHHheecCCCCCCCcC
Confidence 9999999999999999999999999999999 99999999999999999999999999999999875443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.93 E-value=2e-26 Score=243.65 Aligned_cols=202 Identities=37% Similarity=0.614 Sum_probs=176.2
Q ss_pred chhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
...+||....+||+....+.++++++|..++..+....+.+++.+.. .+..+|||+|||+|.++..++.+++..|
T Consensus 45 ~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l~~-----~~~~~vLD~GcG~G~~t~~ll~~~~~~v 119 (254)
T d1xtpa_ 45 PEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPG-----HGTSRALDCGAGIGRITKNLLTKLYATT 119 (254)
T ss_dssp TTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTT-----CCCSEEEEETCTTTHHHHHTHHHHCSEE
T ss_pred cchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhCCC-----CCCCeEEEecccCChhhHHHHhhcCceE
Confidence 44579999999999999999999999999888888889999888743 4677999999999999998888877789
Q ss_pred EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
++||+|+.|++.|+++... .+++++++.++.++.+.. ++||+|+|.++++|+++++..++|++++++|||||++++
T Consensus 120 ~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~~~~--~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii 195 (254)
T d1xtpa_ 120 DLLEPVKHMLEEAKRELAG--MPVGKFILASMETATLPP--NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp EEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCCCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEcCCHHHHHhhhccccc--cccceeEEccccccccCC--CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999988763 345688999999887654 789999999999999998888999999999999999999
Q ss_pred EecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccccc
Q psy8372 241 KDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291 (883)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~el~ 291 (883)
.++........++..+..+.++...|.++|+++||+++.++....+|.+++
T Consensus 196 ~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~fP~~l~ 246 (254)
T d1xtpa_ 196 KENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLF 246 (254)
T ss_dssp EEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTTSC
T ss_pred EecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCCCCccce
Confidence 998776655666777788888999999999999999999988888887665
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.3e-25 Score=232.14 Aligned_cols=208 Identities=39% Similarity=0.695 Sum_probs=174.5
Q ss_pred chhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
...+||+...+||+....+.++++++|+..+..+....+.++...........++.+|||||||+|.++..++..++.+|
T Consensus 7 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v 86 (222)
T d2ex4a1 7 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREV 86 (222)
T ss_dssp CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEE
T ss_pred hHHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEE
Confidence 45789999999999999999999999998888888888888887765555556778999999999999988877777789
Q ss_pred EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
+|||+|+.|++.|++++......+++++++|+.++.+.. ++||+|++..++||+++++..+++++++++|||||.+++
T Consensus 87 ~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~--~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i 164 (222)
T d2ex4a1 87 DMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI 164 (222)
T ss_dssp EEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeecCHHHhhcccccccccccccccccccccccccccc--ccccccccccccccchhhhhhhHHHHHHHhcCCcceEEE
Confidence 999999999999999988765566789999999987544 799999999999999987788999999999999999999
Q ss_pred EecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccccc
Q psy8372 241 KDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291 (883)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~el~ 291 (883)
.++..... ..++..+..+.++.+++.++|+++||+++..+....+|.+++
T Consensus 165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~fP~~~~ 214 (222)
T d2ex4a1 165 KDNMAQEG-VILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIY 214 (222)
T ss_dssp EEEEBSSS-EEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTTSC
T ss_pred EEcccccc-cccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCCCcchh
Confidence 98765543 334455666777889999999999999998887777887654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=2.6e-19 Score=184.35 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++......+++++++|+.+++... ++||+|+|..+
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~--~~fD~v~~~~~ 90 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD--ERFHIVTCRIA 90 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT--TCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccc--ccccccccccc
Confidence 5788999999999999998877764 69999999999999999988777778899999999886544 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---ccc------cCCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---NEY------DDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---~~~------~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+||+++ +..++++++++|||||++++.++...... ..+ .........+..++.++++++||+++
T Consensus 91 l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 163 (231)
T d1vl5a_ 91 AHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE 163 (231)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred ccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEE
Confidence 999977 88999999999999999999886643321 000 01112223356789999999999765
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=8.5e-19 Score=181.59 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=113.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.||||||||+|.++..++..+. +|+|+|+|+.|++.|++++...+..++.++++|+.+++... ++||+|+|..
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~~ 90 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD--DSFDIITCRY 90 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT--TCEEEEEEES
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccc--cccceeeeec
Confidence 36899999999999999998887764 69999999999999999988777677899999999876544 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---c------ccCCcccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---E------YDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~------~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+++|+++ +..++++++++|||||++++.+........ . +.........+..+|..+++.+||.+.
T Consensus 91 ~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~ 164 (234)
T d1xxla_ 91 AAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 164 (234)
T ss_dssp CGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred eeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCcee
Confidence 9999977 889999999999999999998765432210 0 011122222356678888888888764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.77 E-value=1.7e-18 Score=184.59 Aligned_cols=147 Identities=21% Similarity=0.257 Sum_probs=115.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
...+++++|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+. .++++.++|+.+++... ++||+|+
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~--~sfD~V~ 140 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED--NSYDFIW 140 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT--TCEEEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc--cccchhh
Confidence 34568899999999999999988876444699999999999999998877643 46789999999886544 7999999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------ccCCcccccccchhhhhhhhhcccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
|..+++|+++ +..++++++++|||||++++.++........ ..........+...+..+++++||+.+..
T Consensus 141 ~~~~l~h~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~ 216 (282)
T d2o57a1 141 SQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 216 (282)
T ss_dssp EESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccchhhhccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEE
Confidence 9999999977 7899999999999999999998765432211 00111112335678888899999876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.9e-17 Score=172.62 Aligned_cols=142 Identities=20% Similarity=0.135 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....+. .++++..+|+.++.+ +++||+|+|..
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~---~~~fD~v~~~~ 108 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---NEKCDVAACVG 108 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---SSCEEEEEEES
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc---cCceeEEEEEe
Confidence 67899999999999999988776445799999999999999999887754 457999999998743 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++|+++ +..++++++++|||||++++.++....... ...........+...+...+.++||+++.
T Consensus 109 ~~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 109 ATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180 (245)
T ss_dssp CGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred hhhccCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence 9999977 789999999999999999999876433221 11112222344667899999999998754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=1.1e-17 Score=170.80 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+.++..|+.+++... ++||+|+|..+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~--~~fD~I~~~~~ 111 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFED--KTFDYVIFIDS 111 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc-cccccccccccccccC--cCceEEEEecc
Confidence 4678999999999999998888765 599999999999999998876543 3478889998876544 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|++++++.+++++++++|||||++++..+.
T Consensus 112 l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 112 IVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 99998778899999999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=2e-17 Score=167.63 Aligned_cols=132 Identities=19% Similarity=0.156 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++++|||||||+|.++..+ ..++|+|+|+.|++.|+++ .+.++++|+.+++... ++||+|+|..+|
T Consensus 36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~--~~fD~I~~~~~l 101 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD--ESFDFALMVTTI 101 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT--TCEEEEEEESCG
T ss_pred CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc-------cccccccccccccccc--cccccccccccc
Confidence 4668999999999998755 2378999999999999874 3478999999886544 799999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------ccCCcccccccchhhhhhhhhccccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+|+++ +..++++++++|+|||.+++.++........ .....+..+.+..++.++++++||+.+...
T Consensus 102 ~h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 102 CFVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp GGSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 99976 8899999999999999999998765432210 011222334578899999999999887544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=9e-17 Score=171.11 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=115.7
Q ss_pred HHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC
Q psy8372 120 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE 198 (883)
Q Consensus 120 ~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~ 198 (883)
+.++.++.. ....++.+|||||||+|.++.++++....+|+|+|+|+.+++.|++++...+.. .+.+...|..++
T Consensus 39 ~k~~~~~~~-l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 39 AKVDLNLDK-LDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHHHTT-SCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---
T ss_pred HHHHHHHHH-cCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---
Confidence 345555433 345789999999999999999888774457999999999999999998876543 345555554433
Q ss_pred cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----------------cc--CCcccc
Q psy8372 199 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------------YD--DEDSSV 259 (883)
Q Consensus 199 ~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----------------~~--~~~~~~ 259 (883)
+++||.|++..+++|+++++...++++++++|||||++++.+......... .. -..++.
T Consensus 115 --~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~ 192 (280)
T d2fk8a1 115 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGR 192 (280)
T ss_dssp --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred --ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCc
Confidence 368999999999999988778999999999999999999987543221100 00 122334
Q ss_pred cccchhhhhhhhhccccccccc
Q psy8372 260 VRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
..+..++...++++||++....
T Consensus 193 lPS~~~l~~~~e~aGf~v~~~~ 214 (280)
T d2fk8a1 193 LPSTEMMVEHGEKAGFTVPEPL 214 (280)
T ss_dssp CCCHHHHHHHHHHTTCBCCCCE
T ss_pred ccchHhhhhhHHhhccccceee
Confidence 4567788889999999987544
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=1.9e-16 Score=168.83 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=131.7
Q ss_pred hHHHHHHHHhhhcCCCccccccccCCCccccc-hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEE
Q psy8372 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLD-IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 161 (883)
Q Consensus 83 ~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~-~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~ 161 (883)
..+|+-..++|............+|-...... .+...+.++.+.. .....++.+|||||||+|.++.++++....+|+
T Consensus 11 ~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~-~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~ 89 (285)
T d1kpga_ 11 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALG-KLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVV 89 (285)
T ss_dssp HHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHT-TTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEE
T ss_pred HHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHH-HcCCCCCCEEEEecCcchHHHHHHHhcCCcceE
Confidence 44666666666655433222222332222222 2334444444443 344578999999999999999988877555799
Q ss_pred EEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 162 LLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 162 gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
|+++|+.+++.|++++... ....+++..+|..+++ ++||.|++..+++|+..+....++++++++|||||++++
T Consensus 90 git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-----~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l 164 (285)
T d1kpga_ 90 GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 164 (285)
T ss_dssp EEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-----ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence 9999999999999987765 3456677777766542 589999999999999776678999999999999999999
Q ss_pred EecccCCCccccc-------------------CCcccccccchhhhhhhhhcccccccc
Q psy8372 241 KDNVASGVKNEYD-------------------DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 241 ~~~~~~~~~~~~~-------------------~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+........... -..++...+..++..+++++||++...
T Consensus 165 ~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~ 223 (285)
T d1kpga_ 165 HTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV 223 (285)
T ss_dssp EEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEE
T ss_pred EEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhccc
Confidence 8875322110000 012333446678888888888887543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=1.2e-16 Score=161.02 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++++|||||||+|..+..++++++. |+|+|+|+.|++.|+++.......++.+...|+.++.+. ++||+|+|..++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~~fD~I~~~~~~ 105 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYD-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---GEYDFILSTVVM 105 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---CCEEEEEEESCG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhh-hccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---ccccEEEEeeee
Confidence 3459999999999999999888775 999999999999999998877667778888888877653 589999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
||+++++..+++++++++|+|||++++.+........ ......+..+..++.+++ +||+++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--~~~~~~~~~~~~el~~~~--~~~~i~~ 167 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP--CTVGFPFAFKEGELRRYY--EGWDMLK 167 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-----------CCCCBCTTHHHHHT--TTSEEEE
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC--CCCCCCCccCHHHHHHHh--CCCeEEE
Confidence 9998878889999999999999999998765332211 111122223444666666 4566553
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=1.3e-16 Score=170.40 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=126.6
Q ss_pred hhHHHHHHHHhhhcCCCccccccccCCCccccchH-HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQ-TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 82 ~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~-~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
...+|+-..++|...-...-....+|-........ .....++.+.. .....++.+|||||||+|.++.++++....+|
T Consensus 9 i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~-~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v 87 (291)
T d1kpia_ 9 VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALD-KLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNV 87 (291)
T ss_dssp HHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHH-TTCCCTTCEEEEETCTTSHHHHHHHHHHCCEE
T ss_pred HHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHH-hcCCCCCCEEEEecCcchHHHHHHHHhcCcce
Confidence 34566665566554322111112222211222222 22333444433 34457899999999999999998887655579
Q ss_pred EEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHh
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQIL 232 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~L 232 (883)
+|+++|+.+++.|++++...+.. .+.+...|.. .. +++||.|+|..+++|+++ +....++++++++|
T Consensus 88 ~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~L 162 (291)
T d1kpia_ 88 IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT 162 (291)
T ss_dssp EEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTS
T ss_pred eeccchHHHHHHHHHHHHhhccchhhhhhhhccc---cc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999998876433 3455555542 22 368999999999999975 35789999999999
Q ss_pred ccCcEEEEEecccCCCccccc-------------------CCcccccccchhhhhhhhhcccccccc
Q psy8372 233 NKNGIIIIKDNVASGVKNEYD-------------------DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 233 KPGG~lvi~~~~~~~~~~~~~-------------------~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
||||++++.+.+........+ -..++...+..++...++++||++...
T Consensus 163 kpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~ 229 (291)
T d1kpia_ 163 PDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY 229 (291)
T ss_dssp CTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhccccccccee
Confidence 999999998876433211000 122334446677888888888887544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1.2e-16 Score=165.09 Aligned_cols=136 Identities=20% Similarity=0.328 Sum_probs=101.6
Q ss_pred hHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEE
Q psy8372 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 162 (883)
Q Consensus 83 ~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~g 162 (883)
.++|++.++.|+....... ......++..++... .+++.+|||+|||+|.++..++..+. +|+|
T Consensus 6 ~~~yd~~a~~Yd~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~g 69 (246)
T d2avna1 6 WEFYDRIARAYDSMYETPK-------------WKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSLFLQERGF-EVVL 69 (246)
T ss_dssp HHHHHHHHHHHGGGGCSHH-------------HHHHHHHHHHHHHHH--CCSCCEEEEETCTTCHHHHHHHTTTC-EEEE
T ss_pred HHHHHHHHHHHHHHhcccc-------------chHHHHHHHHHHHHh--cCCCCEEEEECCCCchhcccccccce-EEEE
Confidence 4678888888875432211 112223333332221 24677999999999999998887765 5999
Q ss_pred EeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-ccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 163 vD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+|+|+.|++.|+++... .++.+++.+++... ++||+|+|. .++||+++ +..+|++++++|||||.+++.
T Consensus 70 iD~s~~~l~~a~~~~~~------~~~~~~~~~l~~~~--~~fD~ii~~~~~~~~~~d--~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 70 VDPSKEMLEVAREKGVK------NVVEAKAEDLPFPS--GAFEAVLALGDVLSYVEN--KDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp EESCHHHHHHHHHHTCS------CEEECCTTSCCSCT--TCEEEEEECSSHHHHCSC--HHHHHHHHHHHEEEEEEEEEE
T ss_pred eeccccccccccccccc------cccccccccccccc--ccccceeeecchhhhhhh--HHHHHHHHHhhcCcCcEEEEE
Confidence 99999999999987532 36788888876543 799999985 68999977 778999999999999999998
Q ss_pred ecc
Q psy8372 242 DNV 244 (883)
Q Consensus 242 ~~~ 244 (883)
.++
T Consensus 140 ~~~ 142 (246)
T d2avna1 140 VDN 142 (246)
T ss_dssp EEB
T ss_pred ECC
Confidence 854
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.67 E-value=1.3e-16 Score=163.99 Aligned_cols=144 Identities=16% Similarity=0.204 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g---~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|+++..... ...+.+..+|..+++. +.+|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~----~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC----CSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc----ccceeeE
Confidence 577899999999999998777642 2279999999999999999887653 3344666677665543 4689999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc----------------ccCC----------ccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------------YDDE----------DSSVVRS 262 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~----------------~~~~----------~~~~~~s 262 (883)
|..++||++.+++.+++++++++|||||.+++.+......... +... ......+
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 9999999988889999999999999999999988664332100 0000 0011235
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
.+++..+++++||+.+..
T Consensus 194 ~~~~~~~L~~aGF~~v~~ 211 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVEL 211 (225)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCceEE
Confidence 668888999999987754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.67 E-value=1e-16 Score=166.95 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~ 211 (883)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. .++++++|+.++... ++||+|+|. .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~i~~~~~ 110 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN---RKFDLITCCLD 110 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS---CCEEEEEECTT
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchhhhccc---ccccccceeee
Confidence 3457999999999999998888876 599999999999999998876544 468999999887643 589999985 6
Q ss_pred cccccC-hHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFIL-DEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~-ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++|+. .+++.+++++++++|||||.|++...
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 788875 46788999999999999999997543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.66 E-value=1.2e-16 Score=159.02 Aligned_cols=138 Identities=9% Similarity=-0.009 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc------------CCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------------DKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~------------~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.||||+|||+|..+.+++.+|+. |+|+|+|+.|++.|++++.... .....++++|+.++.+..
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~- 96 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD- 96 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc-
Confidence 57889999999999999999999886 9999999999999999875431 233467888887765432
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
...||+|++..+++|+++++...++++++++|||||.+++......... .....+..+.+++.+++. .++.+
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~----~~~p~~~~~~~el~~l~~-~~~~i 168 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----LEGPPFSVPQTWLHRVMS-GNWEV 168 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----SSSCCCCCCHHHHHHTSC-SSEEE
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccccc----CCCccccCCHHHHHHHhC-CCcEE
Confidence 3589999999999999988889999999999999999988775443221 111223345566777664 34544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.7e-16 Score=164.97 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~ 211 (883)
.+..+|||||||+|..+..++..+. +|+|||+|+.|++.|++++..... .+.+.++|+.++++. ++||+|+|. .
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~---~~fD~I~~~~~ 114 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---NEFDAVTMFFS 114 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---SCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhhhhcccc---cccchHhhhhh
Confidence 4567999999999999998888876 599999999999999999876544 468999999988754 489999996 6
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+++|++.+++..+|++++++|||||++++...+
T Consensus 115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 888887777899999999999999999997643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.65 E-value=2.8e-16 Score=161.64 Aligned_cols=136 Identities=19% Similarity=0.186 Sum_probs=106.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.. ..+.++.+++.++.+. ++||+|+|..++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~---~~fD~I~~~~vl 91 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLP---RRYDNIVLTHVL 91 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCS---SCEEEEEEESCG
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----cccccccccccccccc---ccccccccccee
Confidence 466899999999999998877665 59999999999999998754 2467888888877643 589999999999
Q ss_pred cccChHHHHHHHHHHH-HHhccCcEEEEEecccCCCcc----------ccc-------CCcccccccchhhhhhhhhccc
Q psy8372 214 MFILDEDIIKFLNLCK-QILNKNGIIIIKDNVASGVKN----------EYD-------DEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~-r~LKPGG~lvi~~~~~~~~~~----------~~~-------~~~~~~~~s~~~~~~l~~~aGf 275 (883)
+|+++ +..++.+++ ++|||||.+++..++...... ... ...+....+..++.+++.++||
T Consensus 92 eh~~d--~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf 169 (225)
T d2p7ia1 92 EHIDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169 (225)
T ss_dssp GGCSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred EecCC--HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCC
Confidence 99976 889999998 799999999999876443210 000 0112223367789999999999
Q ss_pred cccc
Q psy8372 276 KCVK 279 (883)
Q Consensus 276 ~vv~ 279 (883)
+++.
T Consensus 170 ~i~~ 173 (225)
T d2p7ia1 170 QVTY 173 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=9.3e-17 Score=167.66 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCc---------------------------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD--------------------------- 185 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~--------------------------- 185 (883)
.++.+|||||||+|.++..++..++.+|+|+|+|+.|++.|++++........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 45779999999999988766667666899999999999999998765422110
Q ss_pred ---cEEEccC--CCCCCCcCCCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCccc
Q psy8372 186 ---KCYNVGI--QDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 258 (883)
Q Consensus 186 ---~~~~~d~--~~~~~~~~~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~ 258 (883)
.....+. .........++||+|++..++||++. +++..++++++++|||||++++.++...............
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 0111111 11111222478999999999999964 4688999999999999999999987654432222222334
Q ss_pred ccccchhhhhhhhhccccccccc
Q psy8372 259 VVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 259 ~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+..+.+++.++|++|||+++..+
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEEEE
Confidence 45578899999999999987653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.62 E-value=1.3e-15 Score=159.33 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
+++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|++++..... ..+.+.++|+....... +++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-GKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-SSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-cccceEEEEcc
Confidence 57789999999999999888888887899999999999999998876533 35688999986654332 46899999999
Q ss_pred cccccC--hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFIL--DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl~--ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++||+. .+++..++++++++|||||++++..+.
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 999984 356789999999999999999998753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.8e-16 Score=158.36 Aligned_cols=138 Identities=17% Similarity=0.072 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-----------------cCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-----------------CDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-----------------~~~~~~~~~~d~~~~ 195 (883)
+++.||||+|||+|..+.+++..|+. |+|||+|+.+++.|+++.... ....++++++|+.++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 57789999999999999999999885 999999999999999886532 123567888888877
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
.+.. .+.||+|+...+++|++.++...++++++++|||||++++......... .....+..+..++..+|.. +|
T Consensus 123 ~~~~-~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~----~~gpp~~~~~~el~~lf~~-~~ 196 (229)
T d2bzga1 123 PRTN-IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK----HPGPPFYVPHAEIERLFGK-IC 196 (229)
T ss_dssp GGSC-CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT----CCCSSCCCCHHHHHHHHTT-TE
T ss_pred cccc-cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC----CCCCCCCCCHHHHHHHhcC-CC
Confidence 5543 4689999999999999988889999999999999999988876543221 1112234467788888865 55
Q ss_pred cc
Q psy8372 276 KC 277 (883)
Q Consensus 276 ~v 277 (883)
.+
T Consensus 197 ~i 198 (229)
T d2bzga1 197 NI 198 (229)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.61 E-value=1e-15 Score=160.34 Aligned_cols=145 Identities=20% Similarity=0.246 Sum_probs=113.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.|+++....+ ..+++++.+|+.+..+ .+||+|++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~----~~~D~v~~~ 153 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP----RKADAIILS 153 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----SCEEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc----cchhheeec
Confidence 45679999999999999999888765 7999997 679999999887764 4567899998765322 479999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------cc----CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YD----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+|||+++++...+|++++++|||||+++|.+......... ++ ....+..++.++|.++++++||+++..
T Consensus 154 ~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v 233 (253)
T d1tw3a2 154 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 233 (253)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred cccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 99999998888899999999999999999988643221110 00 011233457889999999999998765
Q ss_pred cC
Q psy8372 281 EK 282 (883)
Q Consensus 281 ~~ 282 (883)
+.
T Consensus 234 ~~ 235 (253)
T d1tw3a2 234 RQ 235 (253)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=1.1e-15 Score=162.67 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=91.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++...... .+++.+.|+.++++. ++||+|+|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~---~~fD~v~~ 100 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN---DKYDIAIC 100 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS---SCEEEEEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccccc---CCceEEEE
Confidence 35678999999999999987766533 2699999999999999999876543 468899999887543 48999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
..++||+++ +..++++++++|||||.+++.++.
T Consensus 101 ~~~l~~~~d--~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 101 HAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp ESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ehhhhcCCC--HHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999977 789999999999999999998865
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.9e-15 Score=159.37 Aligned_cols=150 Identities=10% Similarity=0.128 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC----------------------------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL---------------------------- 184 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~---------------------------- 184 (883)
..+.+|||||||+|.++...+...+.+|+|+|+|+.|++.|+++........
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 4678999999999988765666667789999999999999998765432110
Q ss_pred --ccEEEccCCCCCC----CcCCCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc
Q psy8372 185 --DKCYNVGIQDFKP----EDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 256 (883)
Q Consensus 185 --~~~~~~d~~~~~~----~~~~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~ 256 (883)
...+..|+..-.+ ...+++||+|++..++||++. +++..++++++++|||||+|++.+.........-...-
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 1123344433221 111358999999999999963 46899999999999999999998865432211111111
Q ss_pred ccccccchhhhhhhhhcccccccccC
Q psy8372 257 SSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 257 ~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
..+..+.+++.++|+++||+++..+.
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 23445889999999999999886543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.56 E-value=1e-14 Score=153.07 Aligned_cols=145 Identities=20% Similarity=0.213 Sum_probs=112.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
++..+|||||||+|.++..+++..+. +++++|+ +.+++.|++++...+ ..++.+...|..+.. +.+||+|++.
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~----p~~~D~v~~~ 154 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL----PVTADVVLLS 154 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SCCEEEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc----cccchhhhcc
Confidence 45679999999999999999988766 8999997 789999999887664 345677778776422 2469999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------ccc----CCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYD----DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
++|||+++++...+|++++++|||||+++|.+........ .++ ...++..++..+|.++++++||+++.
T Consensus 155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeE
Confidence 9999999988899999999999999999998865322110 000 11133446788999999999999987
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
.+.
T Consensus 235 ~~~ 237 (256)
T d1qzza2 235 ERT 237 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.9e-14 Score=149.96 Aligned_cols=146 Identities=19% Similarity=0.240 Sum_probs=101.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh----C--CC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccE--EEccCCCC----C
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK----H--FD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKC--YNVGIQDF----K 196 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~----g--~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~--~~~d~~~~----~ 196 (883)
..++..+|||||||+|.++..++.. . .. .++|||+|+.|++.|+++..... ...+.+ ...++.++ .
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence 3345568999999999998777653 1 12 68999999999999999876542 222222 22222211 1
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--------ccccCCcccccccchhhhh
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--------NEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--------~~~~~~~~~~~~s~~~~~~ 268 (883)
....+++||+|+|..++||+++ +..++++++++|+|||.+++..+...... ..+.........+...+.+
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQ 194 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHH
T ss_pred ccCCCCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHH
Confidence 1112468999999999999976 88999999999999999999886544321 1122233334456678889
Q ss_pred hhhhcccccc
Q psy8372 269 LFSKANLKCV 278 (883)
Q Consensus 269 l~~~aGf~vv 278 (883)
++.+.||...
T Consensus 195 ~L~~~G~~~~ 204 (280)
T d1jqea_ 195 MLDNLGLKYE 204 (280)
T ss_dssp HHHHHTCCEE
T ss_pred HHHHCCCceE
Confidence 9999988643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.2e-15 Score=154.27 Aligned_cols=144 Identities=12% Similarity=0.049 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE----
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW---- 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv---- 208 (883)
.++++|||||||+|..+..+++.+..+|+|||+|+.|++.|+++...... .+..+..++.........++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccceeeccc
Confidence 46789999999999999988776666899999999999999999876532 3355666654433222246899887
Q ss_pred -EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 209 -IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 209 -s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+..+++|+.+ ...++++++|+|||||+|++.+........ ..............+...+.++||+....
T Consensus 131 ~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~agF~~~~i 200 (229)
T d1zx0a1 131 PLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGELM-KSKYSDITIMFEETQVPALLEAGFRRENI 200 (229)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHHT-TTTCSCHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred ccccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcchhh-hhhhhhcchhhhhHHHHHHHHCCCeeEEE
Confidence 4667778754 889999999999999999875533221100 00011111112345566777888876543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=2.5e-14 Score=149.56 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..|. +|+|+|+|+.|++.|++++..++... +++++|+.+..+ .++||+|+++..
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~-~~~~~d~~~~~~---~~~fD~V~ani~ 193 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALP---FGPFDLLVANLY 193 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGG---GCCEEEEEEECC
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCce-eEEecccccccc---ccccchhhhccc
Confidence 4688999999999999997777765 69999999999999999988765543 678888765332 258999999755
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+. +..++..++++|||||+++++.... ...+.+.+.++++||+++....
T Consensus 194 ~~~-----l~~l~~~~~~~LkpGG~lilSgil~---------------~~~~~v~~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 194 AEL-----HAALAPRYREALVPGGRALLTGILK---------------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHH-----HHHHHHHHHHHEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred ccc-----HHHHHHHHHHhcCCCcEEEEEecch---------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 433 5578899999999999999986421 1345778899999999876543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=7.8e-14 Score=143.82 Aligned_cols=142 Identities=12% Similarity=-0.011 Sum_probs=107.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+..++++|||+|||+|..+..++..+.. .|+|+|+|+.|++.|++++... .++.++..|........ +..+|+++
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~-~~~~~v~~ 146 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYA-NIVEKVDV 146 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGT-TTCCCEEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccc-cccceeEE
Confidence 34578999999999999999999887654 8999999999999999987643 45566777776654332 35788888
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+...++|..+ ...++.++++.|||||.+++.+....... .........+..+.++++||+++....
T Consensus 147 i~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~------~~~~~~~~~e~~~~L~~aGF~ive~id 212 (230)
T d1g8sa_ 147 IYEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDV------TKDPKEIFKEQKEILEAGGFKIVDEVD 212 (230)
T ss_dssp EEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCS------SSCHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred eeccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCC------CCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 8888888854 88999999999999999999875543211 011111234778899999999987654
|
| >d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.42 E-value=1.5e-13 Score=126.82 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=79.3
Q ss_pred eecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhH
Q psy8372 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVL 701 (883)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~ 701 (883)
|++|++ +||++++.|.++|++ +|.+++.|++++++. |.++++|+++ ++..+|.+++++++||+++|.+|+...++
T Consensus 29 i~vp~~--~sRk~~d~l~~~ak~-~gakGL~~ik~~~~~-~~gpi~Kfl~-~~~~~l~~~~~~~~GD~i~f~ag~~~~~~ 103 (120)
T d1l0wa2 29 LALPKA--LSRKEVAELEEVAKR-HKAQGLAWARVEEGG-FSGGVAKFLE-PVREALLQATEARPGDTLLFVAGPRKVAA 103 (120)
T ss_dssp EEESSC--CCHHHHHHHHHHHHH-TSCSCCEEEEEETTE-EESTTHHHHG-GGHHHHHHHHCCCTTCEEEEEEESHHHHH
T ss_pred EEcCCc--cCHHHHHHHHHHHHH-hhhhhhheeEeeccc-hhhHHHHHhH-HHHHHHHHHcCCCCCCEEEEEcCCHHHHH
Confidence 889975 799999999999987 588999999998765 9999999996 45788999999999999999999999999
Q ss_pred hHHHHHHHHhh
Q psy8372 702 SLLGMIRSESH 712 (883)
Q Consensus 702 ~~lg~lr~~~~ 712 (883)
..||+||.+++
T Consensus 104 ~~LG~lR~~la 114 (120)
T d1l0wa2 104 TALGAVRLRAA 114 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999999
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=8.9e-13 Score=140.41 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC----CccEEEccCCCCCC-CcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK----LDKCYNVGIQDFKP-EDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~----~~~~~~~d~~~~~~-~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++..|. +|+|+|+|+.|++.|+++....... ......+++..... ....++||+|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 3567999999999999999998876 5999999999999999987654221 11233333322110 1113589999
Q ss_pred EEc-ccccccCh-----HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQ-WVLMFILD-----EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~-~vL~hl~d-----ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|. .+++|+++ ++...+|++++++|||||+|++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 985 58999864 4578899999999999999999764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.41 E-value=1.8e-13 Score=136.38 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+++.|++.|++++...+. .+++++++|+.+..... ..||+|++..
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~--~~~D~v~~~~ 108 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI--PDIDIAVVGG 108 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS--CCEEEEEESC
T ss_pred CCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc--CCcCEEEEeC
Confidence 67899999999999999877655 45799999999999999999988754 47789999988765443 6899999988
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++ ..+++.+.+.|||||++++...
T Consensus 109 ~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 109 SGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp CTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 76654 4689999999999999998763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=7.1e-13 Score=139.71 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+.. .++|+|+|+.|++.|+++.. ++.+.++|+.+++... ++||+|++..
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~-----~~~~~~~d~~~l~~~~--~sfD~v~~~~ 155 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----QVTFCVASSHRLPFSD--TSMDAIIRIY 155 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTSCSBCT--TCEEEEEEES
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc-----cccceeeehhhccCCC--CCEEEEeecC
Confidence 45779999999999999988888765 79999999999999987643 4588999999887654 7999999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+++|+ ++++|+|||||++++.++..
T Consensus 156 ~~~~~---------~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 156 APCKA---------EELARVVKPGGWVITATPGP 180 (268)
T ss_dssp CCCCH---------HHHHHHEEEEEEEEEEEECT
T ss_pred CHHHH---------HHHHHHhCCCcEEEEEeeCC
Confidence 88774 46899999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=7.8e-13 Score=132.47 Aligned_cols=105 Identities=20% Similarity=0.196 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...... .+++..+|+.+... +++||+|+|+
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~---~~~fD~Ii~~ 126 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKIITN 126 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEEEC
T ss_pred CCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc---cCCceEEEEc
Confidence 568899999999999998776554 57999999999999999998766433 46788888876332 3689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++|+.. +....+++++.++|||||.+++..
T Consensus 127 ~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 127 PPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp CCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence 9887763 335789999999999999998865
|
| >d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Prokaryotic AspRS, insert domain species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2.1e-13 Score=128.40 Aligned_cols=90 Identities=22% Similarity=0.369 Sum_probs=84.2
Q ss_pred eecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcc----cccccccccCChhhHHHHHHHcCCCCCcEEEEecCCc
Q psy8372 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSL----EWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQ 697 (883)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 697 (883)
|++|+++.++|++++.|.+++++ ++.+++.|++++++. .|.++++|+++++...+|.+.+++++||+++|.+|+.
T Consensus 34 i~vp~~~~~srk~id~l~~~ak~-~ga~GL~~~k~~~~~~~~~~~~gpi~Kfl~~e~~~~l~~~~~~~~GD~iff~ag~~ 112 (133)
T d1c0aa2 34 LRVPGGASLTRKQIDEYGNFVKI-YGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNK 112 (133)
T ss_dssp EEETTGGGCCHHHHHHHHHHHHH-TTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEH
T ss_pred EEccCCccccHHHHHHHHHHHHH-hCCCcceEEEEecCCccccccchHHHhhCCHHHHHHHHHHcCCCCCCEEEEEcCCH
Confidence 99999989999999999999986 788999999996643 4899999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHhh
Q psy8372 698 EDVLSLLGMIRSESH 712 (883)
Q Consensus 698 ~~~~~~lg~lr~~~~ 712 (883)
..++..||+||.+++
T Consensus 113 ~~v~~~LG~lR~~la 127 (133)
T d1c0aa2 113 KIVADAMGALRLKVG 127 (133)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999999
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=2.9e-12 Score=130.43 Aligned_cols=101 Identities=21% Similarity=0.093 Sum_probs=84.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..++++|||||||+|..+..++... .. .|+++|+++.+++.|++++......++.+..+|..+..+.. ++||+|++
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~--~~fD~I~~ 150 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF--SPYDVIFV 150 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG--CCEEEEEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc--cchhhhhh
Confidence 3688999999999999998776653 22 79999999999999999998877777788888887765544 68999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++|+++ ++.+.|||||+|++..
T Consensus 151 ~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 151 TVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred hccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 999999964 2567899999998854
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=4.5e-12 Score=128.00 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=90.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.-.|||||||+|..+..++...+. .++|+|+++.++..|.+++...+..++.++.+|+..+.....++++|.|++....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 347999999999999999988766 8999999999999999999988888899999998876422224789999998888
Q ss_pred cccChHH------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDED------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~ded------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.|..... ...+++.++++|||||.|.+.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7764321 1479999999999999999976
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=3.5e-12 Score=132.60 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=96.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
...++++|||+|||+|.++..++.. +.. +|+++|.++.+++.|++++... ...++++...|+.+..+. +.||.|
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~---~~fD~V 158 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD---QMYDAV 158 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS---CCEEEE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc---ceeeee
Confidence 3468999999999999999888765 333 8999999999999999998765 456778999998876433 589999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++ ++++ +..++.+++++|||||++++..++.. ........++++||..+
T Consensus 159 ~l-----d~p~--p~~~l~~~~~~LKpGG~lv~~~P~i~---------------Qv~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 159 IA-----DIPD--PWNHVQKIASMMKPGSVATFYLPNFD---------------QSEKTVLSLSASGMHHL 207 (250)
T ss_dssp EE-----CCSC--GGGSHHHHHHTEEEEEEEEEEESSHH---------------HHHHHHHHSGGGTEEEE
T ss_pred ee-----cCCc--hHHHHHHHHHhcCCCceEEEEeCCcC---------------hHHHHHHHHHHCCCcee
Confidence 86 3554 56889999999999999998775321 13345566677777543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.28 E-value=5.9e-12 Score=127.68 Aligned_cols=109 Identities=19% Similarity=0.070 Sum_probs=83.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-CCCCccEE
Q psy8372 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-LNIKYDVI 207 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~FDlV 207 (883)
....++++|||+|||+|..+.+++..... +|+|+|+|+.|++.|++++... .++.++..|+....... ....+|+|
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCccccccccceEEEE
Confidence 34578999999999999999988876443 8999999999999999988754 46678888877653322 11234444
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++ .++|.. +...++++++++|||||++++.+..
T Consensus 130 ~~--~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 130 YQ--DIAQKN--QIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred Ee--cccChh--hHHHHHHHHHHHhccCCeEEEEEEc
Confidence 43 455654 3778999999999999999998743
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=5e-13 Score=120.68 Aligned_cols=50 Identities=44% Similarity=0.772 Sum_probs=47.1
Q ss_pred cccccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+||||||+|+++++|++|+|+|||++.|+ ..|+.|||++|++|+++.++.
T Consensus 1 mRth~cgeL~~~~~g~~V~v~GWv~~~R~~g~i~Fi~LRD~~G~~Q~v~~~~~ 53 (106)
T d1c0aa1 1 MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDR 53 (106)
T ss_dssp CCSSCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGG
T ss_pred CCceEcccCChHHCCCEEEEEEEEEEeeeCCCcEEEEEEcCCeEEeEEecccc
Confidence 59999999999999999999999999998 799999999999999997654
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.26 E-value=9.6e-13 Score=118.21 Aligned_cols=50 Identities=36% Similarity=0.573 Sum_probs=47.1
Q ss_pred cccccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|||+||+|+++++|++|+|+|||++.|+ .+|++|||++|++|++++++.
T Consensus 2 ~RTh~~geL~~~~~g~~V~l~GWV~~~R~~g~i~Fi~LRD~~G~iQ~v~~~~~ 54 (104)
T d1l0wa1 2 RRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS 54 (104)
T ss_dssp CCSSCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTS
T ss_pred ccccccccCChHHCCCEEEEEEEEEehhcCCCeEEEEEECCCCceEEecccch
Confidence 69999999999999999999999999999 799999999999999997643
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=9.1e-12 Score=130.26 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=87.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
..++++|||+|||+|.++..++.. +.. +|+++|+++++++.|++++... ...++.+...|+.+....+ ++||.
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~--~~fDa 171 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD--GSVDR 171 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT--TCEEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC--CCcce
Confidence 368999999999999999988876 444 8999999999999999988754 3456788889988765444 79999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
|++ |+++ +..++.+++++|||||.+++..++-
T Consensus 172 V~l-----dlp~--P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 172 AVL-----DMLA--PWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp EEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EEE-----ecCC--HHHHHHHHHhccCCCCEEEEEeCcc
Confidence 986 6766 6789999999999999999988643
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.23 E-value=1.6e-12 Score=116.79 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=49.0
Q ss_pred cccccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCCCC
Q psy8372 8 TRSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQVP 59 (883)
Q Consensus 8 ~r~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~v~ 59 (883)
+|||+|++|+++++|++|+|+|||++.|+ ..|++|||++|.+||++.++.+.
T Consensus 2 ~RTh~~~el~~~~~G~~V~v~Gwv~~~R~~g~i~Fi~LrD~sg~iQ~v~~~~~~~ 56 (103)
T d1b8aa1 2 YRTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVD 56 (103)
T ss_dssp CCSCCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSC
T ss_pred ccccChhhCChhHCCCEEEEEEEEehhccCCCcEEEEEEcCCEeeeEEEeccccc
Confidence 69999999999999999999999999999 69999999999999999887654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.22 E-value=3e-11 Score=125.27 Aligned_cols=137 Identities=22% Similarity=0.186 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
+...+|||||||+|.++..++++.+. +++..|. |..++.+ ....+++++.+|+.+.. + ..|++++..
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~~--p---~~D~~~l~~ 147 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFASV--P---QGDAMILKA 147 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTCC--C---CEEEEEEES
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCccccc--c---cceEEEEeh
Confidence 45679999999999999999998776 8889997 4444322 13456788888876432 1 459999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------ccc----CCcccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYD----DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~----~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+||++++++...+|++++++|+|||+++|.+........ .++ ...++..+|..+|.+++++|||+.+
T Consensus 148 vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v 227 (244)
T d1fp1d2 148 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF 227 (244)
T ss_dssp SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE
T ss_pred hhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCce
Confidence 999999999999999999999999999999875332111 000 0113345688999999999999988
Q ss_pred ccc
Q psy8372 279 KSE 281 (883)
Q Consensus 279 ~~~ 281 (883)
+..
T Consensus 228 ~v~ 230 (244)
T d1fp1d2 228 QVA 230 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.21 E-value=4.6e-11 Score=120.49 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=88.7
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
..|||||||+|.++..++...+. .++|+|+++.++..|.+++......++.++.+|+.++.....++++|.|++...-.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 47999999999999999988766 89999999999999999998888888999999998865333357899999877655
Q ss_pred ccChHH------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 215 FILDED------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 215 hl~ded------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..... ...+++.++++|||||.|.+.+
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 433211 1579999999999999999876
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=4.1e-11 Score=128.57 Aligned_cols=107 Identities=23% Similarity=0.223 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..+++.|+.+|+|+|.|+.|...++..........+.++.+++.++.... ++||+|++..+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~--~~~D~Ivse~~ 111 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV--EKVDVIISEWM 111 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC--SCEEEEEECCC
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCcc--ccceEEEEeee
Confidence 3678999999999999998888888899999999998765554444445667789999999886544 69999999888
Q ss_pred ccccChH-HHHHHHHHHHHHhccCcEEEEE
Q psy8372 213 LMFILDE-DIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 213 L~hl~de-d~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+++..+ .+..++....++|||||+++-.
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 8877654 3567788888999999998743
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=2.1e-11 Score=127.91 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..++++|||+|||+|.++..++... .. +|+++|+++.+++.|++++...+. .++.+...|+..... ...||.|+
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~---~~~~D~V~ 177 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---EKDVDALF 177 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---CCSEEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc---ccceeeeE
Confidence 3689999999999999999888763 33 899999999999999999887643 445555566543222 24788875
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+|+++ +..++.++.++|||||++++..++.. ........+++.||..+.
T Consensus 178 -----~d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~~---------------Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 178 -----LDVPD--PWNYIDKCWEALKGGGRFATVCPTTN---------------QVQETLKKLQELPFIRIE 226 (266)
T ss_dssp -----ECCSC--GGGTHHHHHHHEEEEEEEEEEESSHH---------------HHHHHHHHHHHSSEEEEE
T ss_pred -----ecCCC--HHHHHHHHHhhcCCCCEEEEEeCccc---------------HHHHHHHHHHHCCceeEE
Confidence 46766 77899999999999999998875321 234566777788886554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=3.2e-11 Score=130.52 Aligned_cols=104 Identities=25% Similarity=0.272 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..+++.|+.+|+|+|.|+ +++.|+++....+ ...+.++.+++.++.... ++||+|++..+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~--~~~D~i~se~~ 114 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS--SCEEEEEECCC
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcc--cceeEEEEEec
Confidence 5789999999999999988888888999999986 6788888776653 456788999999886544 68999999888
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEE
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi 240 (883)
.+++.. ..+..++..+.++|||||.++-
T Consensus 115 ~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 877754 3467889999999999998864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=5.1e-11 Score=121.92 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEE
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYN 189 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~ 189 (883)
....+++.+.. ...++.+|||||||+|+.+..++.. +.. +|+++|.++.+++.|++++.... ..++.+..
T Consensus 62 ~~a~~le~L~~---~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (224)
T d1i1na_ 62 MHAYALELLFD---QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV 138 (224)
T ss_dssp HHHHHHHHTTT---TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred HHHHHHHHHhh---ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence 34445554421 2367899999999999998766654 333 79999999999999999887542 34567888
Q ss_pred ccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 190 ~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|.....+.. ++||+|++..+++++++ .+.+.|||||+|++..
T Consensus 139 gD~~~~~~~~--~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 139 GDGRMGYAEE--APYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp SCGGGCCGGG--CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred eecccccchh--hhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 8887665544 68999999999999865 2678899999999865
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=4.5e-11 Score=128.67 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..+++.|+.+|+|+|.|+.+ ..|++....+ ...++.++++++.++.... ++||+|++..+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~--~~~D~ivs~~~ 109 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPV--EKVDIIISEWM 109 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSS--SCEEEEEECCC
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccccc--ceeEEEeeeee
Confidence 578999999999999998888887789999999865 5555555444 4456789999999877554 68999999888
Q ss_pred ccccChH-HHHHHHHHHHHHhccCcEEEEE
Q psy8372 213 LMFILDE-DIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 213 L~hl~de-d~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+++..+ .+..++..+.++|||||.++-.
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 7777543 4788999999999999998743
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.5e-10 Score=121.48 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=99.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..+.+|||+|||+|..+..++..... +|+++|+|+.+++.|++++...+..++++++.|+.+..+ +++||+|+|+.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNP 183 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA---GQQFAMIVSNP 183 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT---TCCEEEEEECC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC---CCceeEEEecc
Confidence 45679999999999999988887665 899999999999999999988877678999999876433 25899999975
Q ss_pred cc-------------cccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 212 VL-------------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 212 vL-------------~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
-. .|-|. +....++..+.+.|+|||.+++.... .......+
T Consensus 184 PYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~----------------~q~~~v~~ 247 (274)
T d2b3ta1 184 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW----------------QQGEAVRQ 247 (274)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS----------------SCHHHHHH
T ss_pred hhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc----------------hHHHHHHH
Confidence 32 11110 23567899999999999999996411 12457788
Q ss_pred hhhhccccccc
Q psy8372 269 LFSKANLKCVK 279 (883)
Q Consensus 269 l~~~aGf~vv~ 279 (883)
++.+.||..+.
T Consensus 248 ~l~~~gf~~i~ 258 (274)
T d2b3ta1 248 AFILAGYHDVE 258 (274)
T ss_dssp HHHHTTCTTCC
T ss_pred HHHHCCCCeEE
Confidence 99999997654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.11 E-value=1.4e-10 Score=118.31 Aligned_cols=98 Identities=20% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.+|||||||+|+++..++.. ..+|+++|.++.+++.|+++... ..++.++.+|.....+.. ++||+|++..
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~~--~pfD~Iiv~~ 142 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEEE--KPYDRVVVWA 142 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGGG--CCEEEEEESS
T ss_pred hcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc--ccccccccCchhhcchhh--hhHHHHHhhc
Confidence 368899999999999999866665 45799999999999999988764 357788888876644433 6899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++++++ .+.+.|||||+|++-.
T Consensus 143 a~~~ip~--------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 143 TAPTLLC--------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp BBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred chhhhhH--------HHHHhcCCCCEEEEEE
Confidence 9999865 2457799999998854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-10 Score=125.30 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhc-----------cC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKD-----------CD 182 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~-----------~~ 182 (883)
..+..++..+- ..++++|||+|||+|.++..++.. +.. +|+++|+++.+++.|++++... ..
T Consensus 85 kD~~~Il~~l~-----i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 85 KDINMILSMMD-----INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp HHHHHHHHHHT-----CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred ccHHHHHHHhC-----CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 34444555553 368999999999999999988775 333 8999999999999999987643 23
Q ss_pred CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 183 KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 183 ~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++.+...|+.+.........||.|++ ++++ +..++.+++++|||||+|++..++
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~--P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVAL-----DMLN--PHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEE-----CSSS--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred cceeEEecchhhcccccCCCCcceEee-----cCcC--HHHHHHHHHHhccCCCEEEEEeCC
Confidence 466888888877654333468999986 4554 557899999999999999987754
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.1e-10 Score=126.28 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=89.5
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc---------cC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD---------CD 182 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~---------~~ 182 (883)
........+++.+ ...++.+|||+|||+|.++..++... ..+++|+|+|+.|++.|+++.... ..
T Consensus 135 ~~~~~~~~~~~~~-----~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~ 209 (328)
T d1nw3a_ 135 TSFDLVAQMIDEI-----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209 (328)
T ss_dssp CCHHHHHHHHHHS-----CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHc-----CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccC
Confidence 3444445555544 23678899999999999998887664 447999999999999998876542 23
Q ss_pred CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 183 KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 183 ~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..++++++|+.+.+..+.-...|+|+++. +.|.+ ++...+.++.+.|||||++++...
T Consensus 210 ~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~--~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 210 AEYTLERGDFLSEEWRERIANTSVIFVNN-FAFGP--EVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCH--HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CceEEEECcccccccccccCcceEEEEcc-eecch--HHHHHHHHHHHhCCCCcEEEEecc
Confidence 46789999998765332001246777654 45664 488999999999999999987653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.06 E-value=3.1e-10 Score=117.42 Aligned_cols=136 Identities=20% Similarity=0.281 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
...+|||||||+|.++..++++.+. ++++.|. +..++.+. ...+++++.+|+.+.. ..+|++++.++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~-----p~aD~~~l~~v 147 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSI-----PNADAVLLKYI 147 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCC-----CCCSEEEEESC
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCC-----CCCcEEEEEee
Confidence 4568999999999999999888776 8999997 44444331 2356788998876532 25799999999
Q ss_pred ccccChHHHHHHHHHHHHHhccC---cEEEEEecccCCCcc---------ccc---CCcccccccchhhhhhhhhccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN---GIIIIKDNVASGVKN---------EYD---DEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG---G~lvi~~~~~~~~~~---------~~~---~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
||++++++..++|++++++|+|| |+++|.+........ .++ ...++..++.++|.+++++|||+.
T Consensus 148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~ 227 (244)
T d1fp2a2 148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQH 227 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCE
T ss_pred cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCce
Confidence 99999999999999999999999 778888765332211 000 112344568899999999999998
Q ss_pred cccc
Q psy8372 278 VKSE 281 (883)
Q Consensus 278 v~~~ 281 (883)
++..
T Consensus 228 ~~i~ 231 (244)
T d1fp2a2 228 YKIS 231 (244)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=2.7e-09 Score=110.21 Aligned_cols=93 Identities=23% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC--Cc----cceeccCC----------CCceeeEe--cCHH
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG--AR----EFVVPTHE----------PNKFYSLV--QSPQ 405 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g--a~----~f~v~~~~----------~~~~~~L~--~Spq 405 (883)
+.+++.|+++| .+.||.|++.|.+... .|.. |+ .|-+.... .....-|+ +|+-
T Consensus 20 ~~~~~~i~~if-~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~ 98 (266)
T d1jjca_ 20 TLMERELVEIF-RALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 98 (266)
T ss_dssp HHHHHHHHHHH-HTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHH
T ss_pred HHHHHHHHHHH-HHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHH
Confidence 45677888899 5899999999988652 2221 22 23322110 01123454 7775
Q ss_pred HHHHHHHccCCC--cEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 406 QLKQLLMVGSVD--RYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 406 l~kq~l~~~~~~--rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
....+ ..+.. |++.+|+|||+|..+.+|.|+|.|+|.-+.
T Consensus 99 q~r~~--~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~v 140 (266)
T d1jjca_ 99 QVRYM--VAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVV 140 (266)
T ss_dssp HHHHH--HHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEE
T ss_pred HHHHH--hccCCCceEEecccceecCCCCCcccccceeeeeeec
Confidence 54443 33443 899999999999999999999999997543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.03 E-value=6.4e-10 Score=115.00 Aligned_cols=137 Identities=23% Similarity=0.295 Sum_probs=102.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+..+|||||||+|.++..++++.+. +++++|+.+. ++.+ ....++.++..|+.+..| ..|++++.+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~~~~P-----~ad~~~l~~ 147 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMFVSIP-----KADAVFMKW 147 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------CCCTTEEEEECCTTTCCC-----CCSCEECSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------ccCCceEEecccccccCC-----CcceEEEEE
Confidence 34568999999999999999998777 8999998543 3221 123456888888765322 357888999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------ccc-----CCcccccccchhhhhhhhhccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYD-----DEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~-----~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
++|++++++...+|++++++|+|||.++|.+........ .++ ....+..++..+|.+++++|||+.
T Consensus 148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999998865322111 000 112344567889999999999998
Q ss_pred cccc
Q psy8372 278 VKSE 281 (883)
Q Consensus 278 v~~~ 281 (883)
++..
T Consensus 228 vkv~ 231 (243)
T d1kyza2 228 FKVH 231 (243)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=3e-10 Score=122.50 Aligned_cols=129 Identities=16% Similarity=0.067 Sum_probs=98.5
Q ss_pred ccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEE
Q psy8372 110 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCY 188 (883)
Q Consensus 110 ~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~ 188 (883)
...+++...+.++..+. .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..++. .+++++
T Consensus 127 G~flDqr~~r~~~~~~~------~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~ 200 (324)
T d2as0a2 127 GFFLDQRENRLALEKWV------QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 200 (324)
T ss_dssp CCCSTTHHHHHHHGGGC------CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred CcccchhhHHHHHHhhc------CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceee
Confidence 34457777777777663 46889999999999999988888877999999999999999999987754 456888
Q ss_pred EccCCCCCC--CcCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 189 NVGIQDFKP--EDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 189 ~~d~~~~~~--~~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+.++.. ...+.+||+|++.....--.. .+...++..+.++|+|||.|+..+++
T Consensus 201 ~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 201 VGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred echhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 888765421 111358999998654221111 23567889999999999999998854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=5.1e-10 Score=114.47 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=83.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccE
Q psy8372 130 KSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 206 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDl 206 (883)
....+|++|||+|||+|.++.+++.. |.. .|+|+|+|+.|++.+++++... .++..+..|+..... ......+|+
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccccccccceEE
Confidence 34578999999999999999988876 333 8999999999999999987643 344566777654322 111257888
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|++. +.|. ++...++.++++.|||||++++....
T Consensus 147 i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 147 IFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEE--cccc--chHHHHHHHHHHhcccCCeEEEEEEC
Confidence 8763 4455 34778999999999999999998754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.01 E-value=6.2e-10 Score=112.77 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
.....++..+- ..++.+|||||||+|+.+..++.....+|+++|.++.+++.|++++...+..++.++++|....
T Consensus 65 ~~~a~ml~~L~-----l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 65 HMVAIMLEIAN-----LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHHT-----CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred hhHHHHHHhhc-----cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC
Confidence 33444555553 3678899999999999998555542246999999999999999999988888889999998876
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+.. ++||.|++..++.++|. . +...|||||+|++..
T Consensus 140 ~~~~--~pfD~Iiv~~a~~~ip~----~----l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 140 FPPK--APYDVIIVTAGAPKIPE----P----LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CGGG--CCEEEEEECSBBSSCCH----H----HHHTEEEEEEEEEEE
T ss_pred Cccc--CcceeEEeecccccCCH----H----HHHhcCCCCEEEEEE
Confidence 5544 68999999999999865 2 456799999998865
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=1.2e-09 Score=114.04 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..++. +.++++++|+.++... +.||.|++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---~~~D~Ii~~~ 182 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---NIADRILMGY 182 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---SCEEEEEECC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---CCCCEEEECC
Confidence 57899999999999999988888876899999999999999999987754 4578899999887643 5899999864
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
. +. ...++..+.++|+|||.+.+........ ......+.+..+....|+.+
T Consensus 183 p-~~-----~~~~l~~a~~~l~~gG~lh~~~~~~~~~---------~~~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 183 V-VR-----THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGYDV 233 (260)
T ss_dssp C-SS-----GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTCEE
T ss_pred C-Cc-----hHHHHHHHHhhcCCCCEEEEEecccccc---------chhhHHHHHHHHHHHcCCce
Confidence 2 11 2357788899999999997766433211 01112334556666777655
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=4.7e-10 Score=120.58 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=92.3
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~ 190 (883)
..++++..+.++.. .++.+|||++||+|.++..++ .+..+|+++|+|+.+++.|++++..++..+++++++
T Consensus 130 ~flDqr~~r~~~~~--------~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~ 200 (318)
T d1wxxa2 130 AYLDQRENRLYMER--------FRGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEA 200 (318)
T ss_dssp CCGGGHHHHHHGGG--------CCEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred cchhhhhhHHHHHH--------hCCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeec
Confidence 34556555544322 257899999999999998765 455679999999999999999999887777889999
Q ss_pred cCCCCCCC--cCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPE--DLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~--~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++... ...++||+|++...-..... .....++..+.++|||||.|++.+++
T Consensus 201 d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 201 NAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 98664211 11368999998653211111 23567899999999999999998753
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.89 E-value=8.4e-10 Score=105.77 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||+|||+|.++..++.+|+.+|+++|.++.+++.+++++..... ..+++++.|+..+... ..++||+|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~-~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-LTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-BCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc-cccccceeEechh
Confidence 5789999999999999999999998999999999999999999887643 4468888888764322 2468999999754
Q ss_pred ccccChHHHHHHHHHHH--HHhccCcEEEEEec
Q psy8372 213 LMFILDEDIIKFLNLCK--QILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~ 243 (883)
... ......+..+. ++|+|||.+++...
T Consensus 93 y~~---~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 YAK---ETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hcc---chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 321 22345555554 57999999998764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=4.7e-09 Score=115.54 Aligned_cols=122 Identities=14% Similarity=-0.006 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhcc---------CC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC---------DK 183 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~---------~~ 183 (883)
......++++.+. ..++.+|||||||+|.++..++.. ++.+|+|||+|+.|++.|++++.... ..
T Consensus 201 ~~~~i~~Il~~l~-----Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 201 LPNFLSDVYQQCQ-----LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp CHHHHHHHHHHTT-----CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred CHHHHHHHHHHhC-----CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 4445555555552 367889999999999999988776 44589999999999999999876431 11
Q ss_pred CccE-EEccCCCCCCC-cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 184 LDKC-YNVGIQDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 184 ~~~~-~~~d~~~~~~~-~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
...+ ...+..+.... ..-..+|+|++++ ++|. +++...|.++.+.|||||++++.+.
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cceeeeeechhhccccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEecc
Confidence 1111 12222211110 0013568888765 4455 4488999999999999999988653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.85 E-value=1.9e-09 Score=109.86 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----CC---CeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----HF---DKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g~---~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~ 200 (883)
.++.+|||||||+|+.+..++.. |. .+|+++|.++.+++.|+++.... ...++.+...|..+..+..
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~- 157 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN- 157 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG-
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc-
Confidence 57889999999999998755443 21 26999999999999999876543 3356788899987765544
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++||.|++..++.++++ .+.+.|||||++++..
T Consensus 158 -~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 158 -APYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPV 190 (223)
T ss_dssp -CSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred -cceeeEEEEeechhchH--------HHHHhcCCCcEEEEEE
Confidence 68999999999999865 2568999999998865
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.83 E-value=2.2e-09 Score=106.94 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCChHH----HHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhhc------------------cC---
Q psy8372 133 PGKTRVLDVGAGIGRIS----KYLLAK----HFD-KIDLLEQSSKFIEQAKEEILKD------------------CD--- 182 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~----~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~~------------------~~--- 182 (883)
.+..||+++|||+|.-. ..+... +.. +++|+|+|+.+++.|++-.-.. ..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35569999999999843 222222 112 6999999999999998531100 00
Q ss_pred ----------CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 183 ----------KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 183 ----------~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+.+...+.....+. ..+.||+|+|.+||.+++++...+++++++++|+|||+|++..
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccC-CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 0112333333332222 1368999999999999998888899999999999999998864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.83 E-value=2.8e-09 Score=114.25 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=93.2
Q ss_pred cchHHHH-HHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEEE
Q psy8372 113 LDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYN 189 (883)
Q Consensus 113 ~~~~~~~-~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~ 189 (883)
++++..+ .++..+ .++.+|||++||+|.++..++..|..+|++||+|+.+++.|++++..++. ..+++++
T Consensus 129 lDqR~~r~~l~~~~-------~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~ 201 (317)
T d2b78a2 129 LDQRQVRNELINGS-------AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201 (317)
T ss_dssp GGGHHHHHHHHHTT-------TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred HHHHHHHHHHHHHh-------hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE
Confidence 4555543 344444 46889999999999999987777887899999999999999999887643 4578999
Q ss_pred ccCCCCCCC--cCCCCccEEEEcccc--------cccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 190 VGIQDFKPE--DLNIKYDVIWIQWVL--------MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 190 ~d~~~~~~~--~~~~~FDlVvs~~vL--------~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+.++... ....+||+|++..-- .... .+...++..+.++|+|||.|+++++.
T Consensus 202 ~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~-~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 202 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVS-KDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHH-HHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 998665321 113589999985321 1111 34678999999999999999998853
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.79 E-value=1e-08 Score=108.88 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~ 190 (883)
+++...+.++..++.. ..++.+|||++||+|.++..++..|. +|++||.|+.+++.|++++..++. ..+++++.
T Consensus 114 ~dqr~nr~~~~~~~~~---~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~ 189 (309)
T d2igta1 114 PEQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE 189 (309)
T ss_dssp GGGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS
T ss_pred cchhHHHHHHHHHHhh---ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeC
Confidence 5777788877776542 14577999999999999998877776 699999999999999999886643 35789999
Q ss_pred cCCCCCCC--cCCCCccEEEEccc-c--------cccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPE--DLNIKYDVIWIQWV-L--------MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~--~~~~~FDlVvs~~v-L--------~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++... .....||+|++..- + ..+ .++...++..+.++|+|||.+++.+.+
T Consensus 190 D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~-~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 190 DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp CHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHH-HHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 98765321 11358999998532 1 111 134566778889999999987776643
|
| >d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.75 E-value=9.8e-09 Score=94.85 Aligned_cols=82 Identities=17% Similarity=0.087 Sum_probs=70.3
Q ss_pred eecCCcccc-------chhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEec
Q psy8372 622 LILPKDLDS-------TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSW 694 (883)
Q Consensus 622 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 694 (883)
|++|+++.. +++..++|.++++. +|.+++.|+ .++.+|++++++.++|.+.+++++||+++|.+
T Consensus 31 i~v~g~a~~~~~~~~~~rk~~d~l~~~ak~-~GakGL~~~--------~~~~~K~l~~e~~~~i~~~~~~~~GD~i~f~a 101 (125)
T d2d6fc2 31 VKLRGFDGLIGVEIQPGRRLGTEMADYAKK-RGVSGIFHT--------DELPAYGITEEEVRGLRDAVGASQGDAVVMVA 101 (125)
T ss_dssp EEETTCTTTSSSEEETTEEHHHHHHHHHHT-TSCSCCEET--------TTTTCSSCCHHHHHHHHHHTTCCSSSEEEEEE
T ss_pred EeccCccccccccccccHHHHHHHHHHHHH-cCCCceEEE--------eccchhcccHHHHHHHHHHhCCCCCCEEEEEe
Confidence 899987743 67888999999986 577777663 35668999999999999999999999999999
Q ss_pred CCchhhHhHHHHH--HHHhh
Q psy8372 695 GKQEDVLSLLGMI--RSESH 712 (883)
Q Consensus 695 ~~~~~~~~~lg~l--r~~~~ 712 (883)
|+...++.+||+| |.+++
T Consensus 102 g~~~~v~~~Lg~v~~Rl~~a 121 (125)
T d2d6fc2 102 HERVTAENALREVIRRAEMA 121 (125)
T ss_dssp ECHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 66655
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=8.2e-09 Score=101.87 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+.+|||++||+|.++..++.+|+.+|++||.++.+++.+++++.........++..|+..+.... ..+||+|++..-.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~-~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-GTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC-CCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc-ccccCEEEEcCcc
Confidence 567999999999999999999999999999999999999999988766666788888877654322 4689999998764
Q ss_pred cccChHHHHHHHHHHHH--HhccCcEEEEEec
Q psy8372 214 MFILDEDIIKFLNLCKQ--ILNKNGIIIIKDN 243 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~ 243 (883)
..- .....+..+.+ +|+++|.+++...
T Consensus 122 ~~~---~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 122 RRG---LLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp STT---THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccc---hHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 321 24455555554 6999999998753
|
| >d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DCoH-like superfamily: GAD domain-like family: GAD domain domain: Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.70 E-value=7.8e-10 Score=103.22 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=72.3
Q ss_pred eecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhH
Q psy8372 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVL 701 (883)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~ 701 (883)
|++|+++.++++.++.+.++++. ++..++.|++..+.. +.+ ..+.+++++.++|.+++++++||+++|.+|+...++
T Consensus 38 i~vpg~a~~~rk~~d~l~~~ak~-~g~~Gl~~i~~~~~~-~~~-~~k~l~~e~~~~l~~~l~~~~GD~il~~Ag~~~~v~ 114 (131)
T d1zq1c2 38 IKLPKFRGLIGREIQPGRRLGTE-FADRAKKYVPGIFHI-DEL-PNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAK 114 (131)
T ss_dssp CEETTCTTTSSSEEETTEEHHHH-HHHHHTTTCSCCEEG-GGC-SBTTBCHHHHHHHHHHTTCCSSCEEEEEEESHHHHH
T ss_pred EEccCccccchhHHHhHHHHHHH-hccccceeEEeecCC-CCC-cccccCHHHHHHHHHHhCCCCCCEEEEEeCCHHHHH
Confidence 99999888899999988888875 566677777765432 333 467788999999999999999999999999999999
Q ss_pred hHHHHHHHHhh
Q psy8372 702 SLLGMIRSESH 712 (883)
Q Consensus 702 ~~lg~lr~~~~ 712 (883)
.+||++|..+.
T Consensus 115 ~aLg~lr~Rl~ 125 (131)
T d1zq1c2 115 NALREVIKRAR 125 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999955444
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.67 E-value=2.2e-08 Score=99.65 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.|.+|||+|||+|.++..++..|..+|+|+|+++.+++.|+++.. .++++++|+.+++ ++||+|+++..+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----CcceEEEeCccc
Confidence 578999999999999987888888889999999999999998865 3478999987643 589999998654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=6.7e-09 Score=101.39 Aligned_cols=107 Identities=15% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC--CCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~FDlVvs~ 210 (883)
+.+.+|||+|||+|.++..++.+|. +++++|.++.+++.|++++...+... ++...+...+. ......+||+|++.
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCccceeEEc
Confidence 4678999999999999998888886 58899999999999999988764433 34444433221 11123589999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.-.+.=..+....++. ..+|+|||.+++...
T Consensus 118 PPY~~~~~~~l~~l~~--~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PPYAMDLAALFGELLA--SGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTTSCTTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred cccccCHHHHHHHHHH--cCCcCCCeEEEEEec
Confidence 6543211111222222 357999999988753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=4.6e-08 Score=97.79 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.|.+|||+|||+|.++..++..|...|+|+|+|+.+++.|++++..... ..+++..|+..+ +++||+|+++.-.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~-----~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF-----NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC-----CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh-----CCcCcEEEEcCcc
Confidence 5789999999999999988888877899999999999999999876544 347888887664 2589999998765
Q ss_pred ccc
Q psy8372 214 MFI 216 (883)
Q Consensus 214 ~hl 216 (883)
...
T Consensus 120 ~~~ 122 (201)
T d1wy7a1 120 GSQ 122 (201)
T ss_dssp SSS
T ss_pred ccc
Confidence 443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.9e-07 Score=96.32 Aligned_cols=146 Identities=16% Similarity=0.053 Sum_probs=92.8
Q ss_pred HHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCC
Q psy8372 118 SNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQD 194 (883)
Q Consensus 118 ~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~ 194 (883)
...++..+..... ...+..+|||+|||+|..+..++...+. +++|+|+|+.+++.|++++..+.. ..+.+...+..+
T Consensus 44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~ 123 (250)
T d2h00a1 44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT 123 (250)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHH
Confidence 3445555543221 2234569999999999999877776544 799999999999999999987743 344555554433
Q ss_pred CCC----CcCCCCccEEEEcccccccChH---------------------------------HHHHHHHHHHHHhccCcE
Q psy8372 195 FKP----EDLNIKYDVIWIQWVLMFILDE---------------------------------DIIKFLNLCKQILNKNGI 237 (883)
Q Consensus 195 ~~~----~~~~~~FDlVvs~~vL~hl~de---------------------------------d~~~~l~~~~r~LKPGG~ 237 (883)
... ....++||+|+|+.-.+.-.++ -...++++....++..|.
T Consensus 124 ~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~ 203 (250)
T d2h00a1 124 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRW 203 (250)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSC
T ss_pred hhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcE
Confidence 221 1223689999999866532110 134455666667777777
Q ss_pred EEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 238 IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 238 lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+..... ...+.......+.+.|+..+
T Consensus 204 ~t~~ig---------------~~~~l~~i~~~L~~~g~~~i 229 (250)
T d2h00a1 204 YSCMLG---------------KKCSLAPLKEELRIQGVPKV 229 (250)
T ss_dssp EEEEES---------------STTSHHHHHHHHHHTTCSEE
T ss_pred EEEEec---------------chhhHHHHHHHHHHcCCCeE
Confidence 655441 11234567788888887644
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.54 E-value=9e-08 Score=94.12 Aligned_cols=122 Identities=12% Similarity=0.166 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQ 193 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~ 193 (883)
......++..+.. ...+.+|||++||+|.++..++.+|+.+|++||.++.+++.+++++..... ..+++++.|+.
T Consensus 26 ~~vrealFn~l~~----~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~ 101 (182)
T d2fhpa1 26 DKVKESIFNMIGP----YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN 101 (182)
T ss_dssp HHHHHHHHHHHCS----CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHH----hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence 4455556665521 236789999999999999999999999999999999999999999876543 35678898886
Q ss_pred CCCCC--cCCCCccEEEEcccccccChHHHHHHHHHHHH--HhccCcEEEEEec
Q psy8372 194 DFKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDN 243 (883)
Q Consensus 194 ~~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~ 243 (883)
.+... ....+||+|++..-... ......+..+.. +|+|+|.+++...
T Consensus 102 ~~l~~~~~~~~~fDlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 102 RALEQFYEEKLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhhhhcccCCCcceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 54211 11357999999775321 224566666654 6999999988653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=1.6e-07 Score=92.95 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~ 196 (883)
..++++.+. ..++..+||++||+|..+..++..... .|+|+|.++.|++.|+++..... .++.++..++.++.
T Consensus 12 l~evi~~l~-----~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 12 VREVIEFLK-----PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREAD 85 (192)
T ss_dssp HHHHHHHHC-----CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHH
T ss_pred HHHHHHhhC-----CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHH
Confidence 344555553 257889999999999999989887533 89999999999999999987643 34578888776542
Q ss_pred C---CcCCCCccEEEEcccc--cccCh-----HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 197 P---EDLNIKYDVIWIQWVL--MFILD-----EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 197 ~---~~~~~~FDlVvs~~vL--~hl~d-----ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. ....++||.|+....+ +++.+ ......+..+.++|+|||.+++.++
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 1 1112589999875333 12111 3467889999999999999998874
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=4.9e-07 Score=94.07 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+..+|||+|||+|..+..++.....+|+++|+|+.+++.|++++...+.. .+.+...+..+..... .++||+|+|+.-
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~-~~~fDlIVsNPP 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK-FASIEMILSNPP 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG-TTTCCEEEECCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc-cCcccEEEEccc
Confidence 34589999999999988776554348999999999999999999887543 3456677766543322 368999999852
Q ss_pred c-----------cccCh------HHHHHHH-HHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 L-----------MFILD------EDIIKFL-NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L-----------~hl~d------ed~~~~l-~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
- .|=|. ++-..++ +-+.+.|+|||.+++.... ...+.+.+++.+.|
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~----------------~Q~~~v~~l~~~~g 252 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE----------------DQVEELKKIVSDTV 252 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT----------------TCHHHHTTTSTTCE
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH----------------HHHHHHHHHHHhCC
Confidence 0 01110 0101112 1245789999998887621 12346667777777
Q ss_pred c
Q psy8372 275 L 275 (883)
Q Consensus 275 f 275 (883)
|
T Consensus 253 ~ 253 (271)
T d1nv8a_ 253 F 253 (271)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=98.44 E-value=5.2e-08 Score=85.15 Aligned_cols=46 Identities=35% Similarity=0.439 Sum_probs=41.6
Q ss_pred cccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCCC
Q psy8372 12 TCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQV 58 (883)
Q Consensus 12 ~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~v 58 (883)
++.++ .+++|++|+|+|||++.|+ ..|++|||++|.+||++++.+.
T Consensus 4 ~I~dl-~~~~g~~V~v~GwV~~~R~~gk~~Fi~LrD~sg~iQ~v~~~~~~ 52 (93)
T d1n9wa1 4 LVRDL-KAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKL 52 (93)
T ss_dssp CGGGG-GGCTTSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEESCCC
T ss_pred EhHHh-hhcCCCEEEEEEEEEeEEeCCCcEEEEEEcCCccceEEeccccc
Confidence 68888 5789999999999999999 6999999999999999987653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.9e-07 Score=93.03 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQD 194 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~ 194 (883)
...++..+... .+..+|||||||+|..+.+++.... .+|+.+|.++...+.|++++...+ ...+++..+++.+
T Consensus 47 ~g~lL~~L~~~----~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 47 QAQLLANLARL----IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHH----TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHc----cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 34556655433 3567999999999999998876533 289999999999999999988764 3456788888655
Q ss_pred CCC----CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 195 FKP----EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 195 ~~~----~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
..+ ....++||+|+...-= +.....+..+.+.|+|||.+++.+..+.+
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~dk-----~~y~~~~~~~~~lL~~GGvii~Dn~l~~G 174 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVLWRG 174 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCSGGG
T ss_pred cchhhhhhcccCCccEEEEeCCH-----HHHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 321 1113589999986421 33667888999999999999998866554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=2.7e-07 Score=92.96 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=83.8
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~ 195 (883)
.++|..++.. .+..+|||+|||+|..+..++.... .+|+++|.++.+++.|++++...+. .+++++.++..+.
T Consensus 45 G~lL~~lv~~----~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~ 120 (214)
T d2cl5a1 45 GQIMDAVIRE----YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL 120 (214)
T ss_dssp HHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHh----hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc
Confidence 3455555443 2456999999999999997776432 2799999999999999998887643 4578899888765
Q ss_pred CCC----cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 196 KPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 196 ~~~----~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.+. ...++||+|++...-... .....+.++.++|||||++++.+..+
T Consensus 121 l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 121 IPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp GGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred ccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 321 112579999986321111 12345677788999999877665433
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=2.6e-06 Score=85.01 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
....+.+++.+...... ++.+|||+|||.|.-+..++-..+. +++.+|.+..-+...++.....+..++++++..++
T Consensus 48 ~~~~rHi~DSl~~~~~~--~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E 125 (207)
T d1jsxa_ 48 EMLVRHILDSIVVAPYL--QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVE 125 (207)
T ss_dssp CHHHHHHHHHHHHGGGC--CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTT
T ss_pred HHHHHHhcchHhhhhhh--cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchh
Confidence 34456777777543332 3569999999999999988777666 89999999999999998888777778889999988
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++... .+||+|+|..+-. +..++.-+...+++||.+++.-
T Consensus 126 ~~~~~---~~fD~V~sRA~~~------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 126 EFPSE---PPFDGVISRAFAS------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp TSCCC---SCEEEEECSCSSS------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhccc---cccceehhhhhcC------HHHHHHHHHHhcCCCcEEEEEC
Confidence 87543 4899999987622 6678888999999999998876
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=4.4e-06 Score=90.15 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......+++.+... ....++.+|||+-||+|.++..+++. +.+|+|+|.++.+++.|++++..++..+++|+.++..+
T Consensus 194 ~~~~e~l~~~v~~~-~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 194 AGVNQKMVARALEW-LDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHH-HTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhhHHHHHHHHh-hccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh
Confidence 44444454444322 22346779999999999999866554 55799999999999999999998888888999998877
Q ss_pred CCCCc--CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 195 FKPED--LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 195 ~~~~~--~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
..... ....+|+|+...-=.-+ ...+..+.+ ++|.-.++++.... +. ..++ ..|.+
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G~-----~~~~~~l~~-~~~~~ivYVSCnp~------------Tl---aRDl-~~l~~ 329 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCNPA------------TL---ARDS-EALLK 329 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESCHH------------HH---HHHH-HHHHH
T ss_pred hhhhhhhhhccCceEEeCCCCccH-----HHHHHHHHH-cCCCEEEEEeCCHH------------HH---HHHH-HHHHH
Confidence 54321 13579999886532222 234555554 36777777776311 11 1122 23557
Q ss_pred cccccccccCCCCCc
Q psy8372 273 ANLKCVKSEKGEFSP 287 (883)
Q Consensus 273 aGf~vv~~~~~~~~P 287 (883)
.||++.....-..||
T Consensus 330 ~gy~l~~i~~~D~FP 344 (358)
T d1uwva2 330 AGYTIARLAMLDMFP 344 (358)
T ss_dssp TTCEEEEEEEECCST
T ss_pred CCCeEeEEEEEecCC
Confidence 899999888888887
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.23 E-value=2.2e-06 Score=91.52 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=84.0
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh----CCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK----HFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~----g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
..++..++.......++.+|||.|||+|.++..++.. ... .++|+|+++.++..|+.+........ .....|.
T Consensus 102 ~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~-~~~~~d~ 180 (328)
T d2f8la1 102 GFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDG 180 (328)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCT
T ss_pred HHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh-hhhcccc
Confidence 3344444333233356679999999999998877643 222 69999999999999998876554433 5566665
Q ss_pred CCCCCCcCCCCccEEEEcccccccChH----------------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDE----------------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~de----------------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
....+. .+||+|+++.-+...... -...++..+.+.|+|||++++..+.
T Consensus 181 ~~~~~~---~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 181 LANLLV---DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp TSCCCC---CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred cccccc---ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 544333 589999998765322111 1234799999999999999887753
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.20 E-value=2.2e-06 Score=83.90 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccCCCCCC-CcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGIQDFKP-EDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~~~~~~-~~~~~~FDlVvs~ 210 (883)
.+.+|||+.||||.++..++.+|+.+|+.||.+..+++..++++...... .......|+.++.. .....+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 56799999999999999999999999999999999999999998766332 33445555443322 1113579999998
Q ss_pred ccccccChHHHHHHHHHHHH--HhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~ 243 (883)
.-... ......+..+.. +|+++|.+++...
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 76443 224566666654 7999999999764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.18 E-value=1.4e-06 Score=88.42 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=89.5
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~ 195 (883)
-+++..+... .+..+|||+|+++|..+.+++..... +|+.+|.++...+.|++.+...+. ..++++.+++.+.
T Consensus 48 g~~L~~L~~~----~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 48 GQFLSMLLKL----INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHH----HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHh----cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 3455555432 35679999999999999988765432 899999999999999999987643 4568888887654
Q ss_pred CCC-----cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 196 KPE-----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 196 ~~~-----~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.+. ...++||+|+...- + +.....+..+.+.|+|||.+++.+..+.+
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa~--k---~~y~~~~e~~~~ll~~gGiii~DNvl~~G 175 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDAD--K---DNYLNYHKRLIDLVKVGGVIGYDNTLWNG 175 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECSC--S---TTHHHHHHHHHHHBCTTCCEEEETTTGGG
T ss_pred HHHHHhccccCCceeEEEeccc--h---hhhHHHHHHHHhhcCCCcEEEEccCCCCC
Confidence 321 01358999998642 1 23668889999999999999998766554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.12 E-value=1.3e-06 Score=91.18 Aligned_cols=108 Identities=23% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----------cCCCccEEEccCCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----------CDKLDKCYNVGIQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----------~~~~~~~~~~d~~~~~~~~~~~ 202 (883)
++..+||-+|+|.|..+..++.....+|++||+++.+++.|++..... ...+++++..|+..+... .+
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--NR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--CC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--cC
Confidence 456799999999999998887766568999999999999999865321 245668888887665432 36
Q ss_pred CccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+|++...-..-+... -..+++.+++.|+|||.+++..
T Consensus 149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 899999854322111111 1479999999999999998765
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.06 E-value=3.1e-06 Score=89.77 Aligned_cols=109 Identities=22% Similarity=0.274 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
+...+||.||+|.|..+..+++.. ..+|++||+++.+++.|++.+... ...+++++..|+..+.... +++||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-EERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-CCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-CCcccE
Confidence 456799999999999998777654 348999999999999999987432 3456688888887764322 368999
Q ss_pred EEEccccccc---ChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFI---LDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl---~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|++...=.+. +... -..+++.+++.|+|||.+++..
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9974421111 1111 2479999999999999998865
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=1.5e-06 Score=80.82 Aligned_cols=53 Identities=23% Similarity=0.185 Sum_probs=46.6
Q ss_pred cccccccccccCCcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCCC
Q psy8372 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQV 58 (883)
Q Consensus 6 ~~~r~~~~~~~~~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~v 58 (883)
...|++++.....++.|++|+|+|||++.|+ ..|+.|||++|.+|+++.....
T Consensus 20 ~~~r~~i~dl~~~~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~iQ~~v~~~~~ 76 (134)
T d1eova1 20 GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKE 76 (134)
T ss_dssp CCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSS
T ss_pred CcEEEEeccccchhcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCcEEEEEEeccc
Confidence 4568888888888999999999999999998 4799999999999999987653
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.02 E-value=3.7e-06 Score=88.33 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C------CccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G------AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g------a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
-.-.+++.+|.+.+|+.+ .+.||.||.||.|.+.. .. | ...|.+.....+..++|....+...-.+....
T Consensus 27 p~G~~l~~~L~~~~~~~~-~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~ 105 (291)
T d1nyra4 27 PNGATIRREIERYIVDKE-VSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANK 105 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHHHH-HHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcE
Confidence 344688999999999999 68999999999998752 11 1 22244433233567889866654444333322
Q ss_pred ------CC-cEEEEeeceecCCCCCC----CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 416 ------VD-RYFQIARCYRDESTRPD----RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 416 ------~~-rvf~I~~~FR~E~~~~~----r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
+. |+|++++|||+|.+... |..||+|.|.+. |.+.+++.+.+++++..
T Consensus 106 ~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e~~~~~~~ 164 (291)
T d1nyra4 106 PHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNM 164 (291)
T ss_dssp CCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred eccccccceEEeeccceeecCCCcccccccceeeeeeeehee-ecCCcccHHHHHHHHHH
Confidence 22 99999999999987653 568999999987 55656666555555544
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.02 E-value=1e-05 Score=85.83 Aligned_cols=118 Identities=16% Similarity=0.225 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC------CCCC-C----ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR------TPGG-A----REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~------~~~g-a----~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-++.+..|.+.+++.| .++||.||.||++... ...| . ..|.+.- ..|+.+.|+ -.+++..-.+
T Consensus 12 ~~~~~~~~~i~~~l~~~f-~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d-~~g~~l~LRpD~T~~iaR~~~ 89 (318)
T d1z7ma1 12 LNQVKSLRQIEGRLRKLF-SLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIK-HEGQSITLRYDFTLPLVRLYS 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEEC-TTCCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHhhccCCCcccccccceeEeec-CCccEEEeeccccchHHHHHH
Confidence 445677888999999999 6899999999998432 1111 1 1244432 247888886 3344543221
Q ss_pred H--ccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 412 M--VGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 412 ~--~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
. ...-.|+|++|+|||.|.....|..||+|+.+|+.+.+ ..|++.++-++++.
T Consensus 90 ~~~~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~~~~ad~Eii~l~~e~l~~ 148 (318)
T d1z7ma1 90 QIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQ 148 (318)
T ss_dssp TCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCcccccccceeEEccccccccchhhhhheeccccchhhHHHHHHHHHHHHHHH
Confidence 1 12234999999999999988888899999999998876 23455555555544
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=7.1e-06 Score=86.08 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=88.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccE
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKC 187 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~ 187 (883)
.+.....+.+.+..... + +...+||-||.|.|..+..+++.. ..+|++||+++.+++.|++..... ...+++.
T Consensus 70 ~De~~YhE~l~h~pl~~-~-~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v 147 (295)
T d1inla_ 70 KDEFMYHEMLAHVPMFL-H-PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEI 147 (295)
T ss_dssp TTHHHHHHHHHHHHHHH-S-SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEE
T ss_pred CchhhhhhhhcchhHhh-C-CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence 34445555666554322 2 456799999999999998887654 348999999999999999876543 3456788
Q ss_pred EEccCCCCCCCcCCCCccEEEEccccccc-ChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFI-LDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 188 ~~~d~~~~~~~~~~~~FDlVvs~~vL~hl-~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..|+..+.... +++||+|++...-... +... -..+++.+++.|+|||.+++..
T Consensus 148 ~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 148 VIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EESCHHHHGGGC-SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EhhhHHHHHhcC-CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 888887765432 4689999975432211 1110 2479999999999999998875
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.95 E-value=4.1e-06 Score=83.53 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..++.+|||.|||+|.++..+...... .++|+|+++.++..++ ....+..|....... ..||+|++
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~~~~~~~~~---~~fd~ii~ 84 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------WAEGILADFLLWEPG---EAFDLILG 84 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------TEEEEESCGGGCCCS---SCEEEEEE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------cceeeeeehhccccc---cccceecc
Confidence 356789999999999998777665333 6999999987654332 224566666655433 48999999
Q ss_pred cccccccCh---------------------------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QWVLMFILD---------------------------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~hl~d---------------------------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+........ .-...++..+.+.|+|||++++..+.
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 876532210 01346788999999999999888753
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.93 E-value=2e-05 Score=79.92 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=104.7
Q ss_pred cchHHHHHHHHHHhhcccC-CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKS-DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~-~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~ 190 (883)
.+.-..+.+++.+...... .....+|+|||+|.|.-+..++-..+. +++.+|.+..-+...+......+..++..+..
T Consensus 48 ~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~ 127 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHD 127 (239)
T ss_dssp HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEES
T ss_pred HHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEee
Confidence 3445566777777433222 234679999999999999877665554 89999999998888888777777777788887
Q ss_pred cCCCCCCC-cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhh
Q psy8372 191 GIQDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 269 (883)
Q Consensus 191 d~~~~~~~-~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 269 (883)
.++++... ...++||+|+|..+. .+..++.-+...+++||.+++.-... ......+....
T Consensus 128 R~E~~~~~~~~~~~~D~v~sRAva------~l~~ll~~~~~~l~~~g~~i~~KG~~-------------~~~El~~a~~~ 188 (239)
T d1xdza_ 128 RAETFGQRKDVRESYDIVTARAVA------RLSVLSELCLPLVKKNGLFVALKAAS-------------AEEELNAGKKA 188 (239)
T ss_dssp CHHHHTTCTTTTTCEEEEEEECCS------CHHHHHHHHGGGEEEEEEEEEEECC--------------CHHHHHHHHHH
T ss_pred hhhhccccccccccceEEEEhhhh------CHHHHHHHHhhhcccCCEEEEECCCC-------------hHHHHHHHHHH
Confidence 77665432 223689999998653 26679999999999999998876211 11112344556
Q ss_pred hhhcccccccc
Q psy8372 270 FSKANLKCVKS 280 (883)
Q Consensus 270 ~~~aGf~vv~~ 280 (883)
+...|+++...
T Consensus 189 ~~~~~~~~~~v 199 (239)
T d1xdza_ 189 ITTLGGELENI 199 (239)
T ss_dssp HHHTTEEEEEE
T ss_pred HHHcCCEEEEE
Confidence 67777776543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.84 E-value=2e-05 Score=82.50 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEcc
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVG 191 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d 191 (883)
...+.+.+..... .+...+||=||.|.|..+..+++.. ..++++||+++.+++.|++..... ...+++.+..|
T Consensus 65 ~Yhe~l~h~~~~~--~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D 142 (290)
T d1xj5a_ 65 AYQEMITHLPLCS--IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD 142 (290)
T ss_dssp HHHHHHHHHHHTT--SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred HHHHHHhhHHHhh--CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc
Confidence 3344555543321 2456799999999999999777653 348999999999999999976432 34566788888
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEec
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
...+.....+++||+|++...=..-+... -..+++.+++.|+|||.+++...
T Consensus 143 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 143 GVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp HHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 76654322235899999743211111111 24799999999999999998863
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.82 E-value=2.7e-05 Score=79.09 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.+|||||||+|.+|..++..+. +|++||+++.+++.++++... ..+++++.+|+.++.... .....|++ +
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~--~~~~~vv~-N 92 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK--NQSYKIFG-N 92 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS--SCCCEEEE-E
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccc--cccceeee-e
Confidence 35788999999999999999998754 699999999999999988763 356789999999886543 22234444 4
Q ss_pred cccccCh
Q psy8372 212 VLMFILD 218 (883)
Q Consensus 212 vL~hl~d 218 (883)
.-.++..
T Consensus 93 LPYnIss 99 (235)
T d1qama_ 93 IPYNIST 99 (235)
T ss_dssp CCGGGHH
T ss_pred ehhhhhH
Confidence 4456643
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1.8e-05 Score=82.64 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhh----ccCCCccEEEcc
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVG 191 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~----~~~~~~~~~~~d 191 (883)
...+.+...... ..+...+||-+|.|.|..+..+++. ...+|+++|+++.+++.|++.... ....+++.+..|
T Consensus 63 ~Yhe~l~h~~l~--~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~D 140 (285)
T d2o07a1 63 SYQEMIANLPLC--SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140 (285)
T ss_dssp HHHHHHHHHHHT--TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred HHHHHhccHhhh--hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEcc
Confidence 344455544322 1245679999999999999988765 345899999999999999997643 235667888888
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEec
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+..+.... .++||+|++...-..-+... -..+++.+++.|+|||.+++...
T Consensus 141 a~~~l~~~-~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 141 GFEFMKQN-QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp HHHHHHTC-SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 76654332 36899999853211111111 23689999999999999998763
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.76 E-value=2.2e-05 Score=81.54 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+...+||-||.|.|..+..+++. +..+|+.||+++.+++.|++..... ...+++.+..|+..+.... +++||+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-ENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-CSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-CCCCCEE
Confidence 45679999999999999988765 3458999999999999999976532 3456688888876654332 3689999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++...-..-+... -..+++.+++.|+|||.++...
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 9754221111000 2379999999999999999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.75 E-value=1.5e-05 Score=84.06 Aligned_cols=124 Identities=20% Similarity=0.220 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNV 190 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~ 190 (883)
....+++.+..... + +...+||-||.|.|..+..+++.. ..+|+.||+++.+++.|++..... ...+++++..
T Consensus 90 ~~YhE~l~h~pl~~-~-~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~ 167 (312)
T d2b2ca1 90 FSYQEMLAHLPMFA-H-PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG 167 (312)
T ss_dssp SHHHHHHHHHHHHH-S-SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS
T ss_pred HHHHHHhhhHHHhc-C-CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEc
Confidence 34455555553221 1 456799999999999999887754 358999999999999999976542 3356677777
Q ss_pred cCCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+..+.... .++||+|++...-..-+... -..+++.+++.|+|||.++...
T Consensus 168 Da~~~l~~~-~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 168 DGFEFLKNH-KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CHHHHHHHC-TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred hHHHHHHhC-CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 776654322 46899999854322111111 3578999999999999999875
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.66 E-value=5.7e-06 Score=84.67 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||||||+|.+|..++..+. +|++||+++.+++.++++... ..+++++.+|+
T Consensus 13 ~d~~ii~kIv~~~~-----~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~ 84 (245)
T d1yuba_ 13 TSEKVLNQIIKQLN-----LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDI 84 (245)
T ss_dssp CCTTTHHHHHHHCC-----CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--CSEEEECCSCC
T ss_pred CCHHHHHHHHHhcC-----CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--ccchhhhhhhh
Confidence 34445555555552 24678999999999999998888764 699999999999988776653 34668899999
Q ss_pred CCCCCCcCCCCccEEEEcccccccCh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
.+++... ..++.|+++-. .|+..
T Consensus 85 l~~~~~~--~~~~~vv~NLP-Y~Ist 107 (245)
T d1yuba_ 85 LQFQFPN--KQRYKIVGNIP-YHLST 107 (245)
T ss_dssp TTTTCCC--SSEEEEEEECC-SSSCH
T ss_pred hcccccc--ceeeeEeeeee-hhhhH
Confidence 9876554 45566665544 57755
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.63 E-value=8.4e-05 Score=78.83 Aligned_cols=118 Identities=14% Similarity=0.257 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCC----ccceeccCCCCceeeEe--cCHHHHHHHHHc
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMV 413 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~ 413 (883)
+..-...+..|...+++.| .++||.+|.||+|.... ..|. ..|.+.-. .|+.+.|+ ..|+...-..-.
T Consensus 14 ~p~~~~~~~~i~~~l~~~f-~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~-~g~~l~LRpD~T~~iar~~~~~ 91 (327)
T d1wu7a2 14 YPEDMDVEKFIFKTAEEAA-EAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSR 91 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeEeECCccchHhhccccCchhHHHHHhhhhcc-cchhhcccccccchhhhHhhhh
Confidence 3456678899999999999 68999999999996541 1121 12544322 37777887 334444322111
Q ss_pred cCC---CcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHH
Q psy8372 414 GSV---DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLC 463 (883)
Q Consensus 414 ~~~---~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~ 463 (883)
... -|+|++|+|||.+.....|..||+|+.+|+.+.+ -.|++.++-+.++
T Consensus 92 ~~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~~~~~D~Eii~l~~~~l~ 148 (327)
T d1wu7a2 92 KDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILD 148 (327)
T ss_dssp TTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred hhccccceeeccCcceeccccccCCcchhhhhhhhhcCCcchHHHHHHHHHHHHHHh
Confidence 122 2999999999999998888899999999999877 2344444444433
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=2.7e-05 Score=81.53 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-C--CC------CccceeccCCCCceeeEecCHHH-HHHHHHccC
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-P--GG------AREFVVPTHEPNKFYSLVQSPQQ-LKQLLMVGS 415 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~--~g------a~~f~v~~~~~~~~~~L~~Spql-~kq~l~~~~ 415 (883)
.-.+++.+|.+.+|+.+ ++.||.||.||.|.+.. . .| .+-|.+.. .+..++|....+- +-.+ +...
T Consensus 28 ~G~~l~~~L~~~i~e~~-~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~--~~~~~~L~Pt~e~~~~~~-~~~~ 103 (291)
T d1qf6a4 28 DGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQI-FNQG 103 (291)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--TTEEEEECSSSHHHHHHH-HTTS
T ss_pred CHHHHHHHHHHHHHHHH-HHcCCEEEEcccccchhHHhhhchhhhccchhccccc--cchhhcccccCcHHHHHH-HHcc
Confidence 44678899999999999 78999999999997752 1 12 22244332 2567888766553 3333 3222
Q ss_pred C------C-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 416 V------D-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 416 ~------~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
. . |+||+++|||+|.... .|-.||+|-|.+. |..-++.++.++++++.
T Consensus 104 ~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~~~~~~~ 162 (291)
T d1qf6a4 104 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 162 (291)
T ss_dssp CEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccchhhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHHHHHHHHH
Confidence 2 2 9999999999996543 3668999999998 55555566666665543
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=8.9e-05 Score=78.56 Aligned_cols=118 Identities=18% Similarity=0.249 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCCc-------cceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGAR-------EFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga~-------~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+-.-.+.|..|.+.+++.| ..+||.||.||++.... . .|.. .|...- ..|+...|+ ..+++..-.
T Consensus 12 ~p~~~~~~~~i~~~l~~~f-~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpD~T~~iar~~ 89 (324)
T d1h4vb2 12 FGKELRMHQRIVATARKVL-EAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQD-RGGRSLTLRPEGTAAMVRAY 89 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEEC-TTSCEEEECCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhc-cCCcccccccccccHHHHHH
Confidence 4566788999999999999 68999999999995431 1 1211 122221 236777776 233344433
Q ss_pred HHccC---C---CcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 411 LMVGS---V---DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 411 l~~~~---~---~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
+... . -|+|++|+|||.+.....|..||+|+++|..+.+ ..+++.++-+.+..
T Consensus 90 -~~~~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~ 152 (324)
T d1h4vb2 90 -LEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKE 152 (324)
T ss_dssp -HHTTGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred -HHhhhhhhchhhhheeeCcccccCcccCCCcceeccccccccCCCChHHHHHHHHHHHHHHHH
Confidence 2222 2 2999999999999999889999999999998876 34455555444433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.60 E-value=0.00018 Score=75.95 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=92.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..++.+|||++||.|.=+..++..... .++++|.++.-+...+++....+..++.....|...+... ...||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~--~~~fD~ILv 191 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL--NVEFDKILL 191 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG--CCCEEEEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc--cccccEEEE
Confidence 367889999999999987777665332 7999999999999999988877666665666665544332 368999996
Q ss_pred cc------cccccC-------hH-------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhh
Q psy8372 210 QW------VLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 269 (883)
Q Consensus 210 ~~------vL~hl~-------de-------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 269 (883)
-. ++..-+ .+ -..+++.++.+.|||||+++-++.+-... .+......+
T Consensus 192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e------------ENE~VV~~~ 259 (313)
T d1ixka_ 192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------ENEFVIQWA 259 (313)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------------GTHHHHHHH
T ss_pred ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH------------hHHHHHHHH
Confidence 22 221111 11 24577889999999999999988653321 123344566
Q ss_pred hhhcccccccc
Q psy8372 270 FSKANLKCVKS 280 (883)
Q Consensus 270 ~~~aGf~vv~~ 280 (883)
+++.+++++..
T Consensus 260 L~~~~~~~~~~ 270 (313)
T d1ixka_ 260 LDNFDVELLPL 270 (313)
T ss_dssp HHHSSEEEECC
T ss_pred HhcCCCEEeec
Confidence 66666666543
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=8.1e-05 Score=78.74 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-----CCCC-----ccceeccCCCCceeeEec--CHHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-----PGGA-----REFVVPTHEPNKFYSLVQ--SPQQLKQLLM 412 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-----~~ga-----~~f~v~~~~~~~~~~L~~--Spql~kq~l~ 412 (883)
-.-.+.|..|.+.+++.| ..+||.+|.||++.... .|.. ..+..-....|+...|+. .+++.+-...
T Consensus 13 p~~~~~~~~i~~~l~~~f-~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~iaR~~~~ 91 (322)
T d1kmma2 13 PGETAIWQRIEGTLKNVL-GSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIE 91 (322)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccchhhHHHHh
Confidence 344567888999999999 78999999999996531 1111 122222223467777872 3444443321
Q ss_pred cc--C--CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 413 VG--S--VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 413 ~~--~--~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
.. . --|+|++|+|||.|.....|..||+|+++|..+.+ -.+++.++-+.++.
T Consensus 92 ~~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~ 151 (322)
T d1kmma2 92 HGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRA 151 (322)
T ss_dssp TTCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhhcccccccCCCCCCccchhhhhhHHHhccccchhHHHHHHHHHHHHHh
Confidence 11 1 12899999999999999999999999999998876 23445544444443
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.54 E-value=5.6e-05 Score=80.09 Aligned_cols=117 Identities=13% Similarity=0.225 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-----CCCCc------cceeccCCCCceeeEe---cCHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-----PGGAR------EFVVPTHEPNKFYSLV---QSPQQLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-----~~ga~------~f~v~~~~~~~~~~L~---~Spql~kq~ 410 (883)
..-.+.|..|.+.+++.| .++||.+|.||++.... .|... .|.... ..+....|+ +.|+ ..-.
T Consensus 13 p~~~~~~~~i~~~l~~~f-~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d-~~~~~~~lr~d~t~~~-~r~~ 89 (325)
T d1qe0a2 13 PEDSKKWRYIENQLDELM-TFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKD-KGDRSITLRPEGTAAV-VRSY 89 (325)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHCC-----------CCEEECH-HHHCCEEECSCSHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhc-cccccccccccccccH-HHHH
Confidence 344578999999999999 68999999999996531 11111 121110 112334454 2232 2211
Q ss_pred HHc---cCC---CcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 411 LMV---GSV---DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 411 l~~---~~~---~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
+.. +.. -|+|++|+|||.+.....|..||+|+.+|+.+.+ -.|++.++-+.++.
T Consensus 90 ~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG~~~~~ad~Eii~l~~~~l~~ 153 (325)
T d1qe0a2 90 IEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQS 153 (325)
T ss_dssp HHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhccccccccchhhheecceeeeccccCCccceeeecceeecCCcCcHHHHHHHHHHHHHHHh
Confidence 111 122 2999999999999999999999999999999876 23455544444433
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.0016 Score=66.14 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCCeEEEcCCeeccCCCC------CCc-c--ceeccCCCCceeeEecCHHHHHHHHHc-cCC---CcEEEEeeceec-CC
Q psy8372 365 HRDFVEVETPTLFKRTPG------GAR-E--FVVPTHEPNKFYSLVQSPQQLKQLLMV-GSV---DRYFQIARCYRD-ES 430 (883)
Q Consensus 365 ~~gF~EV~TP~l~~~~~~------ga~-~--f~v~~~~~~~~~~L~~Spql~kq~l~~-~~~---~rvf~I~~~FR~-E~ 430 (883)
+.+.++|..|.++....| |.. + |.+.. ..+..+-.-+|-.-+|.+++. .+| +.+|+=+++.|. |+
T Consensus 23 ~LnL~rVsAPLfv~~~sGlNDnLnG~ErpV~F~ik~-~~~~~~EiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~DEd 101 (327)
T d12asa_ 23 RLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKA-LPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDED 101 (327)
T ss_dssp HHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSS-STTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCS
T ss_pred HhCcEEecCCeEEcCCCCcccCCCCeeeeeEEecCC-CCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 348999999999775332 222 2 43332 124556677887778887654 244 479999999988 65
Q ss_pred -CCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccC
Q psy8372 431 -TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP 469 (883)
Q Consensus 431 -~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~ 469 (883)
.++.|.-=.-|-|||.....-+--++.+.+.++.|++.+
T Consensus 102 ~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~Iy~~i 141 (327)
T d12asa_ 102 RLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGI 141 (327)
T ss_dssp CCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHH
T ss_pred cCCCceeEEEcccchhhhcCccccCHHHHHHHHHHHHHHH
Confidence 689999899999999998765555666666666666553
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.48 E-value=0.00019 Score=69.71 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC---cCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---DLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~FDlVvs 209 (883)
.+++.++|..||.|..+..++..+. +|+|+|..+.+++.|++.. ..+..+++....++... ...+.+|.|+.
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~ 91 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAALGVERVDGILA 91 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence 5788999999999999999998754 6999999999999998642 34567777776654321 11257999997
Q ss_pred cccc--cccCh-----HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 210 QWVL--MFILD-----EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 210 ~~vL--~hl~d-----ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
..-+ +++.+ ......|......|+|||.+++..+... ....+.+.+++.+++.+.
T Consensus 92 DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~---------------Ed~ivk~~~~e~~~k~i~ 153 (182)
T d1wg8a2 92 DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL---------------EDRVVKRFLRESGLKVLT 153 (182)
T ss_dssp ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH---------------HHHHHHHHHHHHCSEESC
T ss_pred EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc---------------hhHHHHHHHhhccceecc
Confidence 4422 22211 2355688899999999999999884211 123466677766655543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00026 Score=68.52 Aligned_cols=102 Identities=17% Similarity=0.082 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC------cCCCC
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------DLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~~ 203 (883)
..++.+|||+||++|.++..+.... ...++++|+.+- .....+.+++.|+.+.... ....+
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence 3678899999999999999887653 237999997651 1234557888887654210 11357
Q ss_pred ccEEEEcccccccCh---------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 204 YDVIWIQWVLMFILD---------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 204 FDlVvs~~vL~hl~d---------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+|+|..+..--.. +-....+.-+.++||+||.+++-.+.
T Consensus 89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 999999776433211 11346677788999999999999853
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.41 E-value=0.00016 Score=78.20 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCC---------------ccEEEccCCCCCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKL---------------DKCYNVGIQDFKP 197 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~---------------~~~~~~d~~~~~~ 197 (883)
++.+|||..||+|..+...+.. +..+|+++|+|+.+++.+++++..+.... +.+...|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4679999999999999976654 55589999999999999999987653322 2333444332221
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.. ...||+|.... +.. +..++..+.+.++.||.|.++..
T Consensus 125 ~~-~~~fDvIDiDP----fGs--~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ER-HRYFHFIDLDP----FGS--PMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HS-TTCEEEEEECC----SSC--CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hh-cCcCCcccCCC----CCC--cHHHHHHHHHHhccCCEEEEEec
Confidence 11 35799998865 212 45799999999999999999863
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.34 E-value=0.0003 Score=72.15 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC---CC-----cc-ceeccCC---CCceeeEecCHH-----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG---GA-----RE-FVVPTHE---PNKFYSLVQSPQ-----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~---ga-----~~-f~v~~~~---~~~~~~L~~Spq-----l 406 (883)
-.-.+++.+|.+.+++.+ .+.||.||.||+|.... .. +. .. |.+.... .+..++|+...+ +
T Consensus 37 P~G~~l~~~l~~~~~~~~-~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~ 115 (272)
T d1hc7a2 37 PYGYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM 115 (272)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeeh
Confidence 344689999999999999 68999999999886542 22 11 11 3222111 134578875554 2
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCCCCCC--CcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDESTRPDR--QPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~~~~r--~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
++..... ..+. |+||+++|||+|.+.+.. --+|+|.|.++...+.++.....++++..
T Consensus 116 ~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (272)
T d1hc7a2 116 WSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSI 177 (272)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHHHH
Confidence 3332111 1222 999999999999877654 38999999999888877777666665543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.32 E-value=0.00035 Score=76.76 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--------------CeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEccCCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--------------DKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFK 196 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--------------~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~d~~~~~ 196 (883)
.++.+|+|.+||+|.+...++.... ..+.|+|+++.+...|+.+..-.+. ........|.....
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~ 240 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 240 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh
Confidence 4578999999999999876655311 1489999999999999987665432 23456677766543
Q ss_pred CCcCCCCccEEEEcccccccCh---------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILD---------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~d---------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.. ..||+|+++.-+..-.. ..-..++..+...|++||++++..+
T Consensus 241 ~~---~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 241 PS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc---cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 33 58999999887632110 1134699999999999999988875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00038 Score=72.33 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=80.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||++||.|.=+..++..+.. .|+++|+++.-+...++++...+.+++.....+..... ....+.||.|++-
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~-~~~~~~fd~IL~D 178 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-WCGEQQFDRILLD 178 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH-HHTTCCEEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch-hcccccccEEEEe
Confidence 367889999999999988888876554 79999999999999999988776665433333322111 1113579999952
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++..-++ . -..++|.++.+.|||||+|+-++.+-
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 2 2322111 1 14578889999999999999998654
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.29 E-value=0.00035 Score=71.95 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC----Cc-c-ceeccCCC---CceeeEecCHHH-HHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG----AR-E-FVVPTHEP---NKFYSLVQSPQQ-LKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g----a~-~-f~v~~~~~---~~~~~L~~Spql-~kq~l 411 (883)
.-.+++.+|.+.+|+.+ ++.||.||.||+|.+.. .+| .. . |.+..... +..|+|+...+- +-++
T Consensus 33 ~G~~i~~~i~~~i~~~~-~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i- 110 (268)
T d1nj8a3 33 YGFKIRRYTFEIIRNLL-DESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYM- 110 (268)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHh-
Confidence 34578999999999999 68999999999986421 122 22 2 43433221 345889755543 3332
Q ss_pred HccC------CC-cEEEEeeceecCCCCCC---CCcceeccc-ccccCCCHHHHHHHHHHHHH
Q psy8372 412 MVGS------VD-RYFQIARCYRDESTRPD---RQPEFTQLD-IELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 412 ~~~~------~~-rvf~I~~~FR~E~~~~~---r~~EFt~le-~e~~~~~~~dvm~~~E~li~ 463 (883)
+... +. |+||+++|||+|..... |-.||+|.| .+....+.++..+..+.++.
T Consensus 111 ~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~ 173 (268)
T d1nj8a3 111 MKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 173 (268)
T ss_dssp HHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHH
Confidence 2222 12 99999999999965443 458998665 56666777776666665553
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00043 Score=71.53 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++..|||||||+|.+|..++..+. +|+++++++.+++..++...... ..+++++.+|+..+... .++.|+++-
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~----~~~~vV~NL 94 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP----FFDTCVANL 94 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC----CCSEEEEEC
T ss_pred CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh----hhhhhhcch
Confidence 4678999999999999999998875 69999999999999999876542 34568899999887643 356677654
Q ss_pred ccccc
Q psy8372 212 VLMFI 216 (883)
Q Consensus 212 vL~hl 216 (883)
- .++
T Consensus 95 P-Y~I 98 (278)
T d1zq9a1 95 P-YQI 98 (278)
T ss_dssp C-GGG
T ss_pred H-HHH
Confidence 3 344
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=96.98 E-value=0.00084 Score=68.76 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC------CccceeccC---CCCceeeEecCHH-----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG------AREFVVPTH---EPNKFYSLVQSPQ-----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g------a~~f~v~~~---~~~~~~~L~~Spq-----l 406 (883)
-.-.+++.+|.+.+|+.+ + +||.||.||.|.... ..| ..-|.+... ..+..++|+...+ +
T Consensus 30 P~G~~i~~~i~~~~~~~~-~-~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~ 107 (265)
T d1nj1a3 30 PHGFMIRKNTLKILRRIL-D-RDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 107 (265)
T ss_dssp HHHHHHHHHHHHHHHHHH-T-TTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-H-hcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEe
Confidence 334578999999999988 4 699999999875431 111 223555422 1245688875544 2
Q ss_pred HHHHHHccC--CC-cEEEEeeceecCCCCCC---CCcceeccc-ccccCCCHHHHHHHHHHHH
Q psy8372 407 LKQLLMVGS--VD-RYFQIARCYRDESTRPD---RQPEFTQLD-IELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 407 ~kq~l~~~~--~~-rvf~I~~~FR~E~~~~~---r~~EFt~le-~e~~~~~~~dvm~~~E~li 462 (883)
|+.. ..+- +. |+||+++|||+|...+. |-.||+|++ .+....+.++.....+.++
T Consensus 108 ~~~~-~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~ 169 (265)
T d1nj1a3 108 FALW-VRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAV 169 (265)
T ss_dssp HHHH-CCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeee-eccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhH
Confidence 3332 1222 22 99999999999955443 558998765 4444566555444444333
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0013 Score=68.31 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs 209 (883)
.++.+|||++||.|.=+.+++.. +...|+++|+++.-++.+++++...+..++.+...|...+.+... .+.||.|++
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 57889999999999987777654 233799999999999999999988887888888888776654321 257999996
Q ss_pred cc------cccccCh------------HH----HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 210 QW------VLMFILD------------ED----IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 210 ~~------vL~hl~d------------ed----~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.. ++..-++ .. ...++..+. .|+|||.|+-++.+-
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 32 2211110 00 123444444 479999988888653
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=96.93 E-value=7.5e-05 Score=69.69 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=45.2
Q ss_pred cccccccccCCcC----------CCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCCCCc
Q psy8372 8 TRSHTCGALRLSD----------VDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQVPN 60 (883)
Q Consensus 8 ~r~~~~~~~~~~~----------~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~v~e 60 (883)
.|||+|.++...+ .|.+|++||||..+|. ..|++|||.+|.+|+.+.++.+.+
T Consensus 30 ~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk~~F~~i~D~~g~iQi~~~~~~~~~ 95 (143)
T d1e1oa1 30 RRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPE 95 (143)
T ss_dssp CCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSST
T ss_pred cCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCCeeEEEEEeCCceEEEEEccccchh
Confidence 4889998887652 3679999999999998 799999999999999998876543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.89 E-value=0.00062 Score=68.50 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH----hCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--CCCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLA----KHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~----~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~FDl 206 (883)
++.+|||+|++.|..+..++. .+.. +++|+|+.+.....+ .....+++++++|..+..... ....+|+
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl 154 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHLREMAHPL 154 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHHHhcCCCE
Confidence 456999999999987765543 2333 799999976543222 123456788888876543311 1246898
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+.-.. |+ ..... .-+ ....+|+|||++++.|.
T Consensus 155 IfID~~-H~-~~~v~-~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 155 IFIDNA-HA-NTFNI-MKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEESS-CS-SHHHH-HHH-HHHHTCCTTCEEEECSC
T ss_pred EEEcCC-cc-hHHHH-HHH-HHhcccCcCCEEEEEcC
Confidence 887554 43 33222 223 35689999999999884
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.00085 Score=71.10 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCeEEEcCCeeccCC---CCCCc-cce-----------------------ec---cCCCC
Q psy8372 347 NLRFRSKFLMRTREFLA-THRDFVEVETPTLFKRT---PGGAR-EFV-----------------------VP---THEPN 395 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~-~~~gF~EV~TP~l~~~~---~~ga~-~f~-----------------------v~---~~~~~ 395 (883)
=.++|.+|.+.+|+.|. .+.|+.||.||+|.+.. ..|.- .|. .. ....+
T Consensus 38 G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (331)
T d1b76a2 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRG 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccC
Confidence 35689999999999863 46799999999997742 12211 011 00 00113
Q ss_pred ceeeEe--cCHHH---HHHHH--HccCCC-cEEEEeeceecCCCCCC---CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 396 KFYSLV--QSPQQ---LKQLL--MVGSVD-RYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 396 ~~~~L~--~Spql---~kq~l--~~~~~~-rvf~I~~~FR~E~~~~~---r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
...||+ +++.. ++... .-..+. |++|||.|||+|.+... |-.||||.|++. |.+-++..+.....+..
T Consensus 118 ~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~-F~~~~q~~~~~~~~~~~ 196 (331)
T d1b76a2 118 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEE 196 (331)
T ss_dssp GEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred CcccccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhh-hcCCcchhHHHHHHHHH
Confidence 445665 33333 22222 223344 99999999999976432 237999999998 66666666655555544
Q ss_pred H
Q psy8372 465 C 465 (883)
Q Consensus 465 i 465 (883)
+
T Consensus 197 ~ 197 (331)
T d1b76a2 197 R 197 (331)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00054 Score=69.83 Aligned_cols=76 Identities=11% Similarity=0.218 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
+......+++.+. ..++..|||||||+|.+|..++..+ .+|+++|+++.+++..+++... ..+++++.+|+.
T Consensus 6 d~~~~~~Iv~~~~-----~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l 77 (252)
T d1qyra_ 6 DQFVIDSIVSAIN-----PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAM 77 (252)
T ss_dssp CHHHHHHHHHHHC-----CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGG
T ss_pred CHHHHHHHHHhcC-----CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh--ccchhHHhhhhh
Confidence 3444455555552 2467899999999999999888765 4699999999999999875432 245688999998
Q ss_pred CCCC
Q psy8372 194 DFKP 197 (883)
Q Consensus 194 ~~~~ 197 (883)
.+..
T Consensus 78 ~~~~ 81 (252)
T d1qyra_ 78 TFNF 81 (252)
T ss_dssp GCCH
T ss_pred hhcc
Confidence 7754
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.77 E-value=0.00094 Score=67.09 Aligned_cols=108 Identities=16% Similarity=0.014 Sum_probs=62.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+.++|+|+|||.|.++..++.+.. ..|.|+++--..-+. .........+.+++...+... ...++..|+|+|.
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv~---~l~~~~~D~vlcD 139 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDVF---FIPPERCDTLLCD 139 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCTT---TSCCCCCSEEEEC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-CccccccccccccchhhhhHH---hcCCCcCCEEEee
Confidence 35677999999999999987766532 257787774221000 000000011122222222111 1123689999998
Q ss_pred ccccccCh-----HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILD-----EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~d-----ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+-. -++ .....++.-+.++|+|||.|++-.++
T Consensus 140 m~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 140 IGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 6532 222 12346778888999999999998754
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.0014 Score=67.61 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCCeEEEcCCeeccCCCCCCccceeccCCCCceeeEe--cCHHHHHHHHHccCCC---cEEEEeeceecCCCCCCCCcce
Q psy8372 365 HRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMVGSVD---RYFQIARCYRDESTRPDRQPEF 439 (883)
Q Consensus 365 ~~gF~EV~TP~l~~~~~~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~~~~---rvf~I~~~FR~E~~~~~r~~EF 439 (883)
++||.||.||++..........| .+ ..|+.+.|+ -.+|+.+- ++....+ |+|++|+|||.++.+ ..||
T Consensus 18 ~~Gy~~i~tP~~E~~e~~~~~~F-~D--~~g~~l~LRpD~T~~iaR~-~~~~~~~~p~k~~Y~g~VfR~~~~~---~re~ 90 (275)
T d1usya_ 18 KKGFSPFFVPALEKAEEPAGNFF-LD--RKGNLFSIREDFTKTVLNH-RKRYSPDSQIKVWYADFVYRYSGSD---LVAE 90 (275)
T ss_dssp HTTCEECCCCSEEECSSCCSSCE-EE--TTSCEEEECCCHHHHHHHH-HTTCTTCCCEEEECCEEEEEEETTE---EEEE
T ss_pred HcCCceeecCcccccccccccee-Ec--CCCCEEEECCCCcHHHHHH-HHHcCCCCCeeeeEEeeEEEeCCCc---ccce
Confidence 58999999999976543222223 23 337778887 33445553 2222222 999999999987542 3699
Q ss_pred ecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 440 TQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 440 t~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
+|+.+|.-+.+ -.|++.++-+.++.+
T Consensus 91 ~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~l 120 (275)
T d1usya_ 91 YQLGLEKVPRNSLDDSLEVLEIIVESASEF 120 (275)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecCceeechhhHHHHHHHHHHHHHHHHhh
Confidence 99999998865 345566666555544
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.44 E-value=0.0067 Score=63.24 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc---cceeccC-CCCceeeEe-cCHHHHHHHHHc-----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR---EFVVPTH-EPNKFYSLV-QSPQQLKQLLMV----- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~---~f~v~~~-~~~~~~~L~-~Spql~kq~l~~----- 413 (883)
....++...+++.+.+++ .++||+||.||.|.... -.|++ .|.-..+ ..+..+||. +|-.-.--+ ..
T Consensus 53 g~~a~Le~AL~~~~ld~~-~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~~~~~~~LipTsE~~l~~~-~~~~i~~ 130 (311)
T d1seta2 53 GDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL-HSGEILP 130 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHT-TTTCEEE
T ss_pred CHHHHHHHHHHHHHHHhh-hcccceEEeechhhccchhhhcccccccccccccccccceeecccccchhhhh-hhhhhhh
Confidence 455778889999999999 57999999999998752 12211 1221111 123456787 554332222 11
Q ss_pred -cCCC-cEEEEeeceecCCCCC-------CCCcceeccccccc-CCCHHHHHHHHHHHHH---HHhccCCCCceee
Q psy8372 414 -GSVD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELS-FTTRDDVMRLIEELLC---YCLNIPTRTFSRI 476 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~-~~~~~dvm~~~E~li~---~i~~~~~~~f~ri 476 (883)
..+. |+++.++|||.|.... -|..+|+.+|.... ..+.++..+..++++. .+++.+.-||+.+
T Consensus 131 ~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv 206 (311)
T d1seta2 131 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLV 206 (311)
T ss_dssp GGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhc
Confidence 1122 8999999999997432 23489999997654 3356666666666554 4455566666544
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0031 Score=70.89 Aligned_cols=125 Identities=10% Similarity=-0.131 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHH
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-------------------FDKIDLLEQSSKFIEQAKE 175 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-------------------~~~V~gvD~S~~~le~A~~ 175 (883)
.+...+++..++. ..++.+|+|-+||+|.+...+.... ...++|+|+++.+...|+.
T Consensus 149 P~~Iv~~mv~ll~----~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~ 224 (524)
T d2ar0a1 149 PRPLIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 224 (524)
T ss_dssp CHHHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred ccchhHhhhhccc----CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 3444445555532 2457799999999999987654421 1148999999999999998
Q ss_pred HHhhccCCC-----ccEEEccCCCCCCCcCCCCccEEEEcccccccCh------------HHHHHHHHHHHHHhccCcEE
Q psy8372 176 EILKDCDKL-----DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD------------EDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 176 ~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d------------ed~~~~l~~~~r~LKPGG~l 238 (883)
+..-.+... ......+...... ....+||+|+++.-+.--.. ..-..++..+.+.|+|||++
T Consensus 225 nl~l~~~~~~i~~~~~~~~~~~l~~d~-~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 225 NCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp HHHTTTCCCBGGGTBSEEESCTTSHHH-HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HHHhhcccccccccchhhhhhhhhhcc-cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 765432211 0122222221110 11247999999886521110 11236899999999999999
Q ss_pred EEEecc
Q psy8372 239 IIKDNV 244 (883)
Q Consensus 239 vi~~~~ 244 (883)
.+..+.
T Consensus 304 aiIlP~ 309 (524)
T d2ar0a1 304 AVVVPD 309 (524)
T ss_dssp EEEEEH
T ss_pred EEEEeh
Confidence 998753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.042 Score=57.35 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCCccccchHHHHHHHHHHhhcc-cCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCC
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQK-KSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKL 184 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~-~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~ 184 (883)
|++..-.+......+++.+.... .....+..|||||+|.|.+|..++..+ +.+|+++|+++.+++..++... ..+
T Consensus 15 ~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~ 91 (322)
T d1i4wa_ 15 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSP 91 (322)
T ss_dssp GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSS
T ss_pred ccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCC
Confidence 34434456666777777763321 122356789999999999999998774 4589999999999999887764 234
Q ss_pred ccEEEccCCCC
Q psy8372 185 DKCYNVGIQDF 195 (883)
Q Consensus 185 ~~~~~~d~~~~ 195 (883)
.+.+..|+..+
T Consensus 92 ~~ii~~D~l~~ 102 (322)
T d1i4wa_ 92 LQILKRDPYDW 102 (322)
T ss_dssp CEEECSCTTCH
T ss_pred cEEEeCchhhc
Confidence 57777777643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0067 Score=57.20 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs 209 (883)
..++.+||-+||| .|.++..+++....+|+++|.|+.-++.|++..... ++.. +..+.. ....+.||+|+.
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~------~i~~~~~~~~~-~~~~~~~d~vi~ 97 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH------YIATLEEGDWG-EKYFDTFDLIVV 97 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE------EEEGGGTSCHH-HHSCSCEEEEEE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE------EeeccchHHHH-HhhhcccceEEE
Confidence 3678899999998 556666555443336999999999999998764321 2221 111111 111357998886
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
...-.+- ..+..+.++|+|+|++++...
T Consensus 98 ~~~~~~~------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 98 CASSLTD------IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CCSCSTT------CCTTTGGGGEEEEEEEEECCC
T ss_pred EecCCcc------chHHHHHHHhhccceEEEecc
Confidence 4322111 123457889999999988753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.48 E-value=0.031 Score=56.07 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=59.6
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc---c------CCCccEEEccCCCCCCCcCCCCccE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD---C------DKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~---~------~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+|||.-||.|..+..++..|+. |+++|-++.+....+...... . ..+++++.+|..++.... .++||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~-V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-SSCCSE
T ss_pred CEEEECCCcccHHHHHHHhCCCE-EEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-CCCCCE
Confidence 48999999999999988888765 999999997766555433221 1 224588899987765432 357999
Q ss_pred EEEcccccccC
Q psy8372 207 IWIQWVLMFIL 217 (883)
Q Consensus 207 Vvs~~vL~hl~ 217 (883)
|+.-.++.+-.
T Consensus 168 IYlDPMFp~~~ 178 (250)
T d2oyra1 168 VYLDPMFPHKQ 178 (250)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccc
Confidence 99999887653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.35 E-value=0.012 Score=57.17 Aligned_cols=104 Identities=15% Similarity=-0.127 Sum_probs=66.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~ 203 (883)
..++.+||-+|||. |..+..+++ .+...|+++|.++.-++.|++..... . .+..+-.. ...+..
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~-------~-~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI-------A-DLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE-------E-ETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE-------E-EeCCCcCHHHHHHHHhCCCC
Confidence 46889999999998 545555554 35668999999999999998764322 1 11111000 000236
Q ss_pred ccEEEEccc------cccc-ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWV------LMFI-LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~v------L~hl-~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+++-..- .++. ........+..+.++++|||++.+.-.
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 899885321 1111 111134689999999999999988764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.17 E-value=0.071 Score=49.60 Aligned_cols=98 Identities=18% Similarity=0.034 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC--------CcCCC
Q psy8372 132 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--------EDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 202 (883)
..++.+||-+||| .|.++..+++....+|+++|.++.-++.|++..... .+..+...... ...++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~------~~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV------TLVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE------EEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE------EEeccccccccchhhhhhhccccc
Confidence 3678899999998 455555555554447999999999999998754321 12111111110 00124
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+|+|+-... -...+..+.++|+|+|++++...
T Consensus 98 g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 98 LPNVTIDCSG--------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceeeecCC--------ChHHHHHHHHHHhcCCceEEEec
Confidence 6898875321 12567888899999999998764
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.04 E-value=0.18 Score=52.95 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCChHHHHHH-------Hh-------C-CC--eEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLL-------AK-------H-FD--KIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQD 194 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~-------~~-------g-~~--~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~ 194 (883)
+...+|.|+||.+|..+..++ .. . .. +|..-|+-.+=-...=+.+....... .-|..+--..
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 344689999999999884222 11 1 11 56667754432222222222111111 1122222122
Q ss_pred CC-CCcCCCCccEEEEcccccccCh-------------------------------HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 195 FK-PEDLNIKYDVIWIQWVLMFILD-------------------------------EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 195 ~~-~~~~~~~FDlVvs~~vL~hl~d-------------------------------ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+- .-.+.++.|+++|+.++||++. +|...+|+.-++-|+|||++++..
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 11 1122479999999999999752 167789999999999999999987
Q ss_pred cccC
Q psy8372 243 NVAS 246 (883)
Q Consensus 243 ~~~~ 246 (883)
....
T Consensus 210 ~gr~ 213 (359)
T d1m6ex_ 210 LGRR 213 (359)
T ss_dssp EECS
T ss_pred eccC
Confidence 6543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.20 E-value=0.029 Score=53.14 Aligned_cols=98 Identities=15% Similarity=0.003 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||=+|||. |..+..+++. |+.+|+++|.++.-++.|++..... ++...-.++.. ......+|
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~------~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD------ILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE------EECGGGSCHHHHHHHHTTTSCEE
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc------cccccchhHHHHHHHHhhccCcc
Confidence 46788999999987 6677666665 4447999999999999998754321 12111111100 00023599
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-.-.- ...+..+.++++|+|.+++.-.
T Consensus 99 ~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 99 RVIMAGGG--------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred eEEEccCC--------HHHHHHHHHHHhcCCEEEEEee
Confidence 88764321 1356778899999999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.86 E-value=0.034 Score=52.75 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC-------CCCcCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-------KPEDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~ 202 (883)
..++.+||-+|||. |..+..+++. |+..|+++|.++.-++.|++..... .+...-.+. .....+.
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~------vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL------TLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE------EEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE------EEeccccchHHHHHHHHHhhCCC
Confidence 35789999999984 5555555554 4447999999999999997753321 111111110 0000023
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+|+|+-.-. . ...++.+.++|+|||++++...
T Consensus 100 g~Dvvid~vG-----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 100 GADFILEATG-----D---SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp CEEEEEECSS-----C---TTHHHHHHHHEEEEEEEEECCC
T ss_pred CceEEeecCC-----c---hhHHHHHHHHhcCCCEEEEEee
Confidence 6899875321 1 1356778899999999987653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.044 Score=51.31 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCCChHH-HHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCC
Q psy8372 132 DPGKTRVLDVGAGIGRIS-KYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~-~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~ 203 (883)
..++.+||=+|||..... ..++.. |+.+|+++|.++.-++.|++..... ++..+-.+... ...+..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~------~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL------VLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE------EEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc------cccccccccccccccccccCCCC
Confidence 367889999999876543 333333 5558999999999999998753321 12211111100 001246
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+|+-... -...++.+.+++++||++++...
T Consensus 98 ~Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 98 PEVTIECTG--------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceEEEeccC--------CchhHHHHHHHhcCCCEEEEEec
Confidence 898876432 12477889999999999988764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.12 Score=48.41 Aligned_cols=96 Identities=16% Similarity=0.020 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||-.|+ |.|..+..+++....+|++++.|++-++.+++.... .++...-.++.. ...+..+|
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~------~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------EVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc------cccccccccHHHHhhhhhccCCce
Confidence 467889999997 456666666665444699999898888888764321 122211111100 00135699
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+.... ...+..+.++|+|+|+++..-
T Consensus 100 ~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 100 IIIEMLA---------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEeeccc---------HHHHHHHHhccCCCCEEEEEe
Confidence 9987431 145777889999999998753
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=89.84 E-value=0.066 Score=56.74 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=41.9
Q ss_pred ceeeEe--cCHHH---HHHHH--HccCCC-cEEEEeeceecCCCC---CCCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 396 KFYSLV--QSPQQ---LKQLL--MVGSVD-RYFQIARCYRDESTR---PDRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 396 ~~~~L~--~Spql---~kq~l--~~~~~~-rvf~I~~~FR~E~~~---~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
...||+ ++--. |+.++ +..-+. -+.|||+|||||=+- .-|..||+|+|+|. |.+-.+-.....-.+..
T Consensus 181 ~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~-Fv~P~~~~~~~~yw~~~ 259 (394)
T d1atia2 181 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEE 259 (394)
T ss_dssp GEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ceeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcccCCcccccceeeeeEE-EEeCCcchHHHHHHHHH
Confidence 467897 22222 45543 222233 689999999999432 23458999999998 77755544444444433
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.66 E-value=0.15 Score=51.64 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~ 179 (883)
.++..|||.=||+|..+..+...|. ..+|+|+++..++.|++++..
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 5788999999999999986666665 499999999999999988764
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.50 E-value=0.89 Score=45.77 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=56.2
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++|||+=||.|.+..-+-..|+..+.++|+++.+.+..+.+... ..+..|+.++..... ...|+++...-.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------~~~~~Di~~~~~~~~-~~~dll~~g~PC 71 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------KLIKGDISKISSDEF-PKCDGIIGGPPC 71 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS------EEEESCTTTSCGGGS-CCCSEEEECCCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------CCccCChhhCCHhHc-ccccEEeecccc
Confidence 47999999999999878777988788999999998888777642 467888888765443 368999975543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.47 E-value=0.36 Score=45.18 Aligned_cols=99 Identities=14% Similarity=-0.044 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-----CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-----EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~ 203 (883)
...++.+||=+|||. |..+..+++. |...|+.+|.++.-++.|++..... .+.....+... ...++.
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~------~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD------CLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE------EECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc------ccCCccchhhhhhhHhhhhcCC
Confidence 346788999999998 6666666655 5558999999999888888764322 11111111000 001256
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEec
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~~ 243 (883)
+|+|+-.-- ....+..+.++++|| |.+++.-.
T Consensus 99 ~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 99 VDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp BSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CcEEEEecc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence 899875321 125788899999996 99988653
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=88.83 E-value=0.64 Score=47.29 Aligned_cols=128 Identities=11% Similarity=0.016 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.++||||+=||.|.++..+-..|+..+.++|+++.+++..+.+.... ...|+.++..... ..+|+++...-.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~-~~~Dll~ggpPC 81 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI-PDHDILCAGFPC 81 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS-CCCSEEEEECCC
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhc-ceeeeeeccccc
Confidence 57899999999999998887888887888999999999998887532 2467766654432 368999975533
Q ss_pred ccc---------ChH--HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 214 MFI---------LDE--DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 214 ~hl---------~de--d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+-+ .++ .+-..+-++.+.++|. +++.++...- .. .........+...|++.|+.+.
T Consensus 82 q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~----~~---~~~~~~~~~i~~~l~~lGY~~~ 148 (327)
T d2c7pa1 82 QAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNF----AS---HDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGG----GT---GGGGHHHHHHHHHHHHTTBCCE
T ss_pred chhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhh----hh---hccchhhHHhhhHHHhcCCcce
Confidence 222 111 1333334455667784 4444433211 00 0111123466778888887654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.43 E-value=0.48 Score=44.01 Aligned_cols=97 Identities=15% Similarity=-0.021 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCCChH-HHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccE
Q psy8372 132 DPGKTRVLDVGAGIGRI-SKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDV 206 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~-~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDl 206 (883)
..++.+||=+|||.-.. +..+++ .|...|+.+|.++.-++.|++.... .++..+-.+... ...++.+|+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~------~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------HVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe------EEEeCCCcCHHHHHHHHcCCCCcE
Confidence 46788999999986443 333333 3666788999999999999875432 223222221110 011247998
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+-.-. -...++.+.++++|+|++++..
T Consensus 100 vid~~G--------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 100 ALESTG--------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp EEECSC--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEcCC--------cHHHHHHHHhcccCceEEEEEe
Confidence 875321 1256778899999999998865
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.17 E-value=0.49 Score=46.15 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=38.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 178 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~ 178 (883)
.++..|||.=||+|..+..+...+ ...+|+|+++..++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence 578899999999999998555555 459999999999999999875
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.68 E-value=0.14 Score=52.33 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=44.2
Q ss_pred eeEe--cCHHH---HHHHH--HccCCC-cEEEEeeceecCCCC--CC----CCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 398 YSLV--QSPQQ---LKQLL--MVGSVD-RYFQIARCYRDESTR--PD----RQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 398 ~~L~--~Spql---~kq~l--~~~~~~-rvf~I~~~FR~E~~~--~~----r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
+||+ ++|.. ||..+ +-..+. ++-|||+|||+|.+. ++ |--||||+|++. |.+-++..+..+.++.
T Consensus 113 ~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~pe~~~~~~~~~~~ 191 (290)
T d1g5ha2 113 GKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLR 191 (290)
T ss_dssp CEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHH
T ss_pred ceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEE-EeCCcchHHHHHHHHH
Confidence 4676 34432 44432 223343 899999999977543 22 337999999988 7888888877777776
Q ss_pred HH
Q psy8372 464 YC 465 (883)
Q Consensus 464 ~i 465 (883)
..
T Consensus 192 ~~ 193 (290)
T d1g5ha2 192 HR 193 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.47 E-value=0.2 Score=46.43 Aligned_cols=98 Identities=19% Similarity=0.105 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCC--CChHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCc
Q psy8372 132 DPGKTRVLDVGAG--IGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCG--tG~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~F 204 (883)
..++.+||=+||+ .|..+..+++ .+...|+++|.++.-++.+++..... .+..+..++.. ...++.|
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~------~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY------VINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE------EEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce------eeccCCcCHHHHHHHHhhcccc
Confidence 3678899999973 4445554444 46668999999999999988754321 22222111100 0012469
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+|+.... -...+..+.++++|||++++.-.
T Consensus 99 d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 99 DAVIDLNN--------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEEESCC--------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhhcccc--------cchHHHhhhhhcccCCEEEEecc
Confidence 98887432 12466778899999999988753
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=85.28 E-value=1.3 Score=40.27 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=54.8
Q ss_pred CeEEEEcCC--CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAG--IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCG--tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++|.=||+| -+.++..+.+.|+ +|++.|.++..++.|++.... .....+.... ...|+|+..-
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~------~~~DiIilav-- 65 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLV------DEAGQDLSLL------QTAKIIFLCT-- 65 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSC------SEEESCGGGG------TTCSEEEECS--
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhcc------ceeeeecccc------cccccccccC--
Confidence 477888887 3345555656666 499999999988887664321 1111222211 3679888633
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
|.......++++...|+++-.++
T Consensus 66 ---p~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 66 ---PIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp ---CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---cHhhhhhhhhhhhhhccccccee
Confidence 44557788899988888776553
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.93 E-value=0.12 Score=47.72 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCC-hHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG-~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlVv 208 (883)
.++.+||=+|||.= ..+..+++....+|+++|.++.-++.+++.... .++...-.+... ....+.+|.|+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~------~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS------LTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc------ccccccchhHHHHHHHhhcCCccccc
Confidence 57889999998763 344444444335799999999999998865332 122222111100 00012344444
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+... ...+..+.++|+|||++++.-
T Consensus 100 ~~~~---------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAVS---------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCSC---------HHHHHHHHTTEEEEEEEEECC
T ss_pred cccc---------chHHHHHHHHhcCCcEEEEEE
Confidence 3322 145677889999999998865
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.48 E-value=1 Score=44.36 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.......++... ..++..|||.=||+|..+......|. +.+|+|+++...+.|++++...
T Consensus 193 P~~L~~~~I~~~------s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 193 PAAVIERLVRAL------SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CHHHHHHHHHHH------SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred chhHHHHHHHhh------cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 344444444444 25788999999999999986666665 5999999999999999998754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.82 E-value=2 Score=39.07 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=55.8
Q ss_pred eEEEEcCCC-Ch-HHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 137 RVLDVGAGI-GR-ISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 137 rVLDVGCGt-G~-~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+|+=||||. |. ++..+.+.++. +|+|+|.++..++.|++.... .....+..... ....|+|+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~------~~~~~~~~~~~----~~~~dlIila~-- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII------DEGTTSIAKVE----DFSPDFVMLSS-- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC------SEEESCGGGGG----GTCCSEEEECS--
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc------hhhhhhhhhhh----ccccccccccC--
Confidence 588899986 43 45555556665 799999999999998875321 11111111111 12578888744
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
|.+.....+.++...++++..+.
T Consensus 71 ---p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 ---PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ---CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---Cchhhhhhhhhhhcccccccccc
Confidence 33456778889999998765443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.59 E-value=0.32 Score=45.08 Aligned_cols=96 Identities=15% Similarity=-0.017 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCCCChHH-HHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRIS-KYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~-~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~FDlV 207 (883)
.++.+||=+|||..... ..+++ .|...|+++|.++.-++.+++..... ++..+-.... .......+|+|
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~------~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH------VVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE------EEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce------eecCcccHHHHHHHhhCCCCceEE
Confidence 57889999999876543 33443 46668999999999888888654321 2221111000 00012468988
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+-... . ...++.+.+.|++||++++.-
T Consensus 105 id~~g-----~---~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 105 MDFVG-----S---QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EESSC-----C---HHHHHHGGGGEEEEEEEEECC
T ss_pred EEecC-----c---chHHHHHHHHHhCCCEEEEEe
Confidence 76432 1 246788899999999999865
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=83.36 E-value=2.5 Score=42.68 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCCCCc------CCCCc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPED------LNIKY 204 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~~~~------~~~~F 204 (883)
...|+.+|||-=.-...+ ..... .++=+|. +.+++.-++.+.... ......+..|+.+-.... ..+.-
T Consensus 90 ~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p 167 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 167 (297)
T ss_dssp CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence 346777999987766433 21222 5666773 777777666665542 223355666665311100 01234
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
=++++-.++++++.++..++++.+.....||+.+++...
T Consensus 168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 567778899999999999999999999999999888653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=82.99 E-value=0.97 Score=41.44 Aligned_cols=97 Identities=18% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+||=+|||. |.++..+++....+++++|.++.-++.+++..... ++...-.+... ...+.+|+|+-.
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~------~i~~~~~~~~~-~~~~~~D~vid~ 100 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE------VVNSRNADEMA-AHLKSFDFILNT 100 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE------EEETTCHHHHH-TTTTCEEEEEEC
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE------EEECchhhHHH-HhcCCCceeeee
Confidence 46788999999874 44555555544345778999988888887654321 22211111111 112479988764
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..-. ..+....++|+|+|++++...
T Consensus 101 ~g~~--------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 101 VAAP--------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CSSC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred eecc--------hhHHHHHHHHhcCCEEEEecc
Confidence 3211 234567789999999998653
|