Psyllid ID: psy8375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHccccccEEEEccccccEEEEEccEEccccccHHHHHccHHHHHHccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcHcccHHHHHHHHHEEEcccccccccHHHHHHHHHHHHccccEEEEEEccccccEEEEEcHHHHHHHHHHHHHHHcHHHHccccccEEEEEccc
Coil and Loop (DISEMBL)
MGVSECIVDVIrscpmeaqphlyenivitggccgfagirdrvesdvrtlapdefdvnvvlpsnpmtyaweggklmsldpefySFVVTKEEYEEEGLALCYERFDI
Flexible Loop (DISEMBL)
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLApdefdvnvvlpsNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLAlcyerfdi
Low Complexity Region (SEG)
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI
Disordered region (IsUnstruct)
****ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER***
Disordered Region (DISOPRED)
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI
Disordered Region (DISEMBL)
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI
Disordered Region (DISPRO)
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9DEE9	396	Actin-related protein 6 O	yes	N/A	1.0	0.265	0.571	1e-30
Q9GZN1	396	Actin-related protein 6 O	yes	N/A	1.0	0.265	0.571	8e-30
Q9D864	396	Actin-related protein 6 O	yes	N/A	1.0	0.265	0.552	6e-29
Q8LGE3	421	Actin-related protein 6 O	yes	N/A	0.971	0.242	0.450	5e-22
Q5NBI2	429	Actin-related protein 6 O	yes	N/A	0.971	0.237	0.411	9e-20
A2WNB0	429	Actin-related protein 6 O	N/A	N/A	0.971	0.237	0.411	9e-20
P45890	398	Actin-like protein 13E OS	yes	N/A	0.971	0.256	0.392	1e-18
Q6C982	387	Actin-like protein ARP6 O	yes	N/A	0.971	0.263	0.392	1e-15
Q54KZ7	490	Actin-related protein 6 O	yes	N/A	0.971	0.208	0.313	3e-14
P93738	366	Putative actin-9 OS=Arabi	no	N/A	0.961	0.275	0.316	4e-13

>sp|Q9DEE9|ARP6_CHICK Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IVD I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct: 292 MGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVL 351

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TY+WEGGKL+S + +F   VVT+E+YEE G  +C E+FDI
Sbjct: 352 PENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEKFDI 396

Gallus gallus (taxid: 9031)

>sp|Q9GZN1|ARP6_HUMAN Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IV  I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct: 292 MGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVL 351

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TYAWEGGKL+S + +F   VVT+E+YEE G ++C E+FDI
Sbjct: 352 PENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI 396

Homo sapiens (taxid: 9606)

>sp|Q9D864|ARP6_MOUSE Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IV  I++ P E QPH ++NIV+TGG   F G R+RV S+VR L P ++DV+VVL
Sbjct: 292 MGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVVL 351

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TY+WEGGKL+S + +F   VVT+E+YEE G ++C E+FDI
Sbjct: 352 PENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI 396

Mus musculus (taxid: 10090)

>sp|Q8LGE3|ARP6_ARATH Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 64/102 (62%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G++ECIV  I SC    QP LY++I++TGG   F  +++R+E ++R L PD FDV +   
Sbjct: 318 GLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQ 377

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
            +P+   W GG L++  P+F S  VTK EYEE G A C  RF
Sbjct: 378 EDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRF 419

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling. Required for the activation of FLC and FLC/MAF genes expression to levels that inhibit flowering, through both histone H3 and H4 acetylation and methylation mechanisms. Involved in several developmental processes including organization of plant organs, leaves formation, flowering time repression, and fertility. Modulates photoperiod-dependent epidermal leaves cell development; promotes cell division in long days, and cell expansion/division in short days. May be involved in the regulation of pathogenesis-related proteins (PRs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5NBI2|ARP6_ORYSJ Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 63/102 (61%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G++ECIV  I++C    QP L+E I++TGG   F    +R+E ++R L PD++ V ++  
Sbjct: 326 GLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQ 385

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
            +P+  AW GG L++  P+F S  +TK EYEE G   C  RF
Sbjct: 386 EDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRF 427

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes by chromatin remodeling. Involved in several developmental processes. May be involved in the regulation of pathogenesis-related proteins (PRs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 63/102 (61%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G++ECIV  I++C    QP L+E I++TGG   F    +R+E ++R L PD++ V ++  
Sbjct: 326 GLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQ 385

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
            +P+  AW GG L++  P+F S  +TK EYEE G   C  RF
Sbjct: 386 EDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRF 427

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes by chromatin remodeling. Involved in several developmental processes. May be involved in the regulation of pathogenesis-related proteins (PRs).

Oryza sativa subsp. indica (taxid: 39946)

>sp|P45890|ARP6_DROME Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 63/102 (61%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           +G+ E + D +++CP EA   L  NI+I GG   F G   R++ D+R L PD+ +V+++ 
Sbjct: 297 VGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLIC 356

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
           P +P+ YAW GGK ++  P F  FV T+++YEE G     +R
Sbjct: 357 PEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYGFQGINQR 398

Drosophila melanogaster (taxid: 7227)

>sp|Q6C982|ARP6_YARLI Actin-like protein ARP6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ARP6 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 57/102 (55%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E I + I++ P E +  L  NIVI GGC    G + R+E D+R L P E+ +   L 
Sbjct: 274 GLCETIAESIQASPKEFRSLLCSNIVIVGGCAKLPGFQSRLEKDLRPLIPSEYHMKTRLD 333

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
             P     +GGK++   P F +  VTK+EY+E G  LC +RF
Sbjct: 334 DKPDFTTLQGGKVLVDQPGFSNLCVTKQEYDEYGWRLCRQRF 375

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Involved in chromosome stability.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q54KZ7|ARP6_DICDI Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 61/102 (59%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G++E IV  I          LY NI++ GG   F G+++R+E ++R LAP+++++N+  P
Sbjct: 388 GLAESIVQSINCTNSNLHIPLYSNIILLGGSTLFPGLKERLELELRKLAPEQYNINIFQP 447

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
            +P+     GG  ++  P++  + ++K++YEE G   C ++F
Sbjct: 448 QDPILSPLYGGIRLAQQPDYLKYSISKQDYEEYGYNYCNKKF 489

Dictyostelium discoideum (taxid: 44689)

>sp|P93738|ACT9_ARATH Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 PE=5 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  CP++ +  +Y NI++TGG     GI++R+  ++  L P    V VV+P
Sbjct: 264 GIHEATRNSILKCPVDTRRDMYGNILMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVP 323

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F+   +TK+EYEE G A+ + +
Sbjct: 324 PESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRK 364

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
390352808	394	PREDICTED: actin-related protein 6-like	0.990	0.263	0.567	5e-31
193704470	398	PREDICTED: actin-related protein 6-like	0.990	0.261	0.580	3e-30
345483116	394	PREDICTED: actin-related protein 6-like	1.0	0.266	0.552	5e-30
114052308	394	ARP6 actin-related protein 6-like protei	1.0	0.266	0.619	8e-30
395744716	508	PREDICTED: actin-related protein 6 [Pong	1.0	0.206	0.571	3e-29
45382865	396	actin-related protein 6 [Gallus gallus]	1.0	0.265	0.571	6e-29
326911753	494	PREDICTED: actin-related protein 6-like	1.0	0.212	0.571	9e-29
340720754	391	PREDICTED: actin-related protein 6-like	1.0	0.268	0.533	2e-28
350412590	391	PREDICTED: actin-related protein 6-like	1.0	0.268	0.533	2e-28
357609103	362	ARP6 actin-related protein 6-like protei	1.0	0.290	0.590	2e-28

>gi|390352808|ref|XP_788458.3| PREDICTED: actin-related protein 6-like [Strongylocentrotus purpuratus]

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 77/104 (74%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+SE IV  I + P E  PHLY NIV+TGG C F G+++RVE DVR+LAP E+DV V LP
Sbjct: 291 GISEAIVHSISATPKEMHPHLYRNIVLTGGNCAFPGVKERVEKDVRSLAPVEYDVQVTLP 350

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
            NP+TYAWEGGK M+   EF    V+K++YEEEG  +C+++FD+
Sbjct: 351 PNPVTYAWEGGKTMTESKEFSKLTVSKKQYEEEGQNICFDKFDV 394

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|193704470|ref|XP_001952066.1| PREDICTED: actin-related protein 6-like [Acyrthosiphon pisum]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+SE I+  I  CP E +PHLY NI++TGG   F G  +R+  +VR LAPDEFDV+V +
Sbjct: 295 MGISEAIILSINLCPEETRPHLYNNIIVTGGNGCFPGFEERLTKEVRALAPDEFDVSVTV 354

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TYAW GG L+S DP+F+S VVTKEEY+EEG + C+ RFD+
Sbjct: 355 PENPITYAWHGGNLLSKDPDFFSLVVTKEEYDEEGFSACH-RFDV 398

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483116|ref|XP_001607054.2| PREDICTED: actin-related protein 6-like [Nasonia vitripennis]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E I+D +++C  E  PHL  NIV+TGG   F G ++RV+ +VR LAPDE+ + V L
Sbjct: 290 MGIPEAIIDCLKACEQETWPHLLSNIVLTGGSSKFPGFQERVQKEVRALAPDEYAIEVHL 349

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P +P+TYAWEGGKL+S DP + + +V +EEYEEEG ALCY++FDI
Sbjct: 350 PEDPITYAWEGGKLLSKDPGYANLIVKREEYEEEGQALCYDKFDI 394

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052308|ref|NP_001040469.1| ARP6 actin-related protein 6-like protein [Bombyx mori] gi|95103028|gb|ABF51455.1| ARP6 actin-related protein 6-like protein [Bombyx mori]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 76/105 (72%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E I+  I SCP E   +L  NIV+ GG   F G RDRV +DVR+LA D FDVN+ L
Sbjct: 290 MGIPEAIMHSINSCPEEHTENLLANIVLYGGNTLFPGFRDRVYNDVRSLALDHFDVNIEL 349

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TYAWEGGK +  DPEFYSF +TKEEYEEEG  L +ERFDI
Sbjct: 350 PDNPITYAWEGGKYIFRDPEFYSFCMTKEEYEEEGKPLAFERFDI 394

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395744716|ref|XP_002823675.2| PREDICTED: actin-related protein 6 [Pongo abelii]

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IV  I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct: 404 MGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVL 463

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TYAWEGGKL+S + +F   VVT+E+YEE G ++C E+FDI
Sbjct: 464 PENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI 508

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45382865|ref|NP_989968.1| actin-related protein 6 [Gallus gallus] gi|27923736|sp|Q9DEE9.1|ARP6_CHICK RecName: Full=Actin-related protein 6; Short=gArp6; AltName: Full=gARPX gi|12082091|dbj|BAB20763.1| gARPX [Gallus gallus]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IVD I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct: 292 MGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVL 351

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TY+WEGGKL+S + +F   VVT+E+YEE G  +C E+FDI
Sbjct: 352 PENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEKFDI 396

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326911753|ref|XP_003202220.1| PREDICTED: actin-related protein 6-like [Meleagris gallopavo]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IVD I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct: 390 MGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVL 449

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TY+WEGGKL+S + +F   VVT+E+YEE G  +C E+FDI
Sbjct: 450 PENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEKFDI 494

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340720754|ref|XP_003398796.1| PREDICTED: actin-related protein 6-like [Bombus terrestris]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 77/105 (73%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E I+D +++C  E  PHL  NI++TGG   F G ++R+  +VR+LAP E+ +NV L
Sbjct: 287 MGIPEAIMDCLKACDEETWPHLLSNIILTGGNAKFPGFQERIYKEVRSLAPAEYTINVHL 346

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TYAW GGK +S DP F S +VT+E+YEEEG  LC+ERFD+
Sbjct: 347 PENPITYAWHGGKTLSKDPIFSSLLVTREDYEEEGQNLCFERFDV 391

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412590|ref|XP_003489697.1| PREDICTED: actin-related protein 6-like [Bombus impatiens]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 77/105 (73%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E I+D +++C  E  PHL  NI++TGG   F G ++R+  +VR+LAP E+ +NV L
Sbjct: 287 MGIPEAIMDCLKACDEETWPHLLSNIILTGGNAKFPGFQERIYKEVRSLAPAEYTINVHL 346

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
           P NP+TYAW GGK +S DP F S +VT+E+YEEEG  LC+ERFD+
Sbjct: 347 PENPITYAWHGGKTLSKDPIFSSLLVTREDYEEEGQNLCFERFDV 391

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609103|gb|EHJ66302.1| ARP6 actin-related protein 6-like protein [Danaus plexippus]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 75/105 (71%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           MG+ E IV  + SCP E +  L ENIV+ GG   F G ++RV  +VR LA D +DVNV  
Sbjct: 258 MGIPEAIVHSVNSCPEENRESLLENIVLFGGNTLFPGFKERVYQEVRALALDHYDVNVSR 317

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
             NP+TYAWEGGK+M  DP+FYSF VT+EEYEEEG +L YERFDI
Sbjct: 318 SDNPVTYAWEGGKMMFRDPDFYSFCVTREEYEEEGKSLAYERFDI 362

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|Q9DEE9	396	ACTR6 "Actin-related protein 6	1.0	0.265	0.571	2.7e-29
UNIPROTKB|Q9GZN1	396	ACTR6 "Actin-related protein 6	1.0	0.265	0.571	7.1e-29
ZFIN|ZDB-GENE-030131-3543	396	actr6 "ARP6 actin-related prot	1.0	0.265	0.542	1.9e-28
MGI|MGI:1914269	396	Actr6 "ARP6 actin-related prot	1.0	0.265	0.552	3.9e-28
TAIR|locus:2102202	421	ARP6 "AT3G33520" [Arabidopsis	0.971	0.242	0.450	9.8e-21
FB|FBgn0011741	398	Arp6 "Actin-related protein 6"	0.904	0.238	0.410	1e-18
DICTYBASE|DDB_G0287007	490	arpF "actin related protein 6"	0.971	0.208	0.313	3.6e-13
TAIR|locus:2064627	366	ACT9 "AT2G42090" [Arabidopsis	0.961	0.275	0.316	1e-12
DICTYBASE|DDB_G0289487	376	act3 "actin" [Dictyostelium di	0.961	0.268	0.297	1.9e-12
GENEDB_PFALCIPARUM|PFL2215w	376	PFL2215w "actin" [Plasmodium f	0.961	0.268	0.326	3.1e-12

UNIPROTKB|Q9DEE9 ACTR6 "Actin-related protein 6" [Gallus gallus (taxid:9031)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query:     1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
             MG+ E IVD I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct:   292 MGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVL 351

Query:    61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
             P NP+TY+WEGGKL+S + +F   VVT+E+YEE G  +C E+FDI
Sbjct:   352 PENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEKFDI 396

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|Q9GZN1 ACTR6 "Actin-related protein 6" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 60/105 (57%), Positives = 79/105 (75%)

Query:     1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
             MG+ E IV  I++ P E QPH ++NIV+TGG   F G RDRV S+VR L P ++DV+VVL
Sbjct:   292 MGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVL 351

Query:    61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
             P NP+TYAWEGGKL+S + +F   VVT+E+YEE G ++C E+FDI
Sbjct:   352 PENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI 396

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

ZFIN|ZDB-GENE-030131-3543 actr6 "ARP6 actin-related protein 6 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 57/105 (54%), Positives = 78/105 (74%)

Query:     1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
             MG+ E +V+ I + P E QPH Y+NIV+TGG   F G RDRV  +VR LAP E+DV+VVL
Sbjct:   292 MGIPEALVNSINNMPEEMQPHFYKNIVLTGGNTLFPGFRDRVYKEVRALAPVEYDVSVVL 351

Query:    61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
             P+NP+ Y+WEGGKL++ +P+F    VT+++YEE G  +C E+FDI
Sbjct:   352 PNNPICYSWEGGKLLAENPDFEEMAVTRDDYEENGHYICEEKFDI 396

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914269 Actr6 "ARP6 actin-related protein 6" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/105 (55%), Positives = 79/105 (75%)

Query:     1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
             MG+ E IV  I++ P E QPH ++NIV+TGG   F G R+RV S+VR L P ++DV+VVL
Sbjct:   292 MGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVVL 351

Query:    61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
             P NP+TY+WEGGKL+S + +F   VVT+E+YEE G ++C E+FDI
Sbjct:   352 PENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI 396

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102202 ARP6 "AT3G33520" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 9.8e-21, P = 9.8e-21
 Identities = 46/102 (45%), Positives = 64/102 (62%)

Query:     2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
             G++ECIV  I SC    QP LY++I++TGG   F  +++R+E ++R L PD FDV +   
Sbjct:   318 GLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQ 377

Query:    62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
              +P+   W GG L++  P+F S  VTK EYEE G A C  RF
Sbjct:   378 EDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRF 419

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0030029 "actin filament-based process" evidence=TAS

GO:0008283 "cell proliferation" evidence=IMP

GO:0009910 "negative regulation of flower development" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=RCA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009909 "regulation of flower development" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

FB|FBgn0011741 Arp6 "Actin-related protein 6" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 39/95 (41%), Positives = 61/95 (64%)

Query:     1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
             +G+ E + D +++CP EA   L  NI+I GG   F G   R++ D+R L PD+ +V+++ 
Sbjct:   297 VGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLIC 356

Query:    61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
             P +P+ YAW GGK ++  P F  FV T+++YEE G
Sbjct:   357 PEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYG 391

GO:0005634 "nucleus" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=ISS

GO:0070828 "heterochromatin organization" evidence=ISS

DICTYBASE|DDB_G0287007 arpF "actin related protein 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 181 (68.8 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 32/102 (31%), Positives = 61/102 (59%)

Query:     2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
             G++E IV  I          LY NI++ GG   F G+++R+E ++R LAP+++++N+  P
Sbjct:   388 GLAESIVQSINCTNSNLHIPLYSNIILLGGSTLFPGLKERLELELRKLAPEQYNINIFQP 447

Query:    62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
              +P+     GG  ++  P++  + ++K++YEE G   C ++F
Sbjct:   448 QDPILSPLYGGIRLAQQPDYLKYSISKQDYEEYGYNYCNKKF 489

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2064627 ACT9 "AT2G42090" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 32/101 (31%), Positives = 55/101 (54%)

Query:     2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
             G+ E   + I  CP++ +  +Y NI++TGG     GI++R+  ++  L P    V VV+P
Sbjct:   264 GIHEATRNSILKCPVDTRRDMYGNILMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVP 323

Query:    62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                    W GG +++    F+   +TK+EYEE G A+ + +
Sbjct:   324 PESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRK 364

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

DICTYBASE|DDB_G0289487 act3 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 30/101 (29%), Positives = 54/101 (53%)

Query:     2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
             G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct:   274 GIHETTYNSIMKCDVDIRKDLYSNVVLSGGSTMFPGIADRMNKELTALAPSTMKIKIIAP 333

Query:    62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                    W GG +++  P F    ++KEEY+E G ++ + +
Sbjct:   334 PERKYSVWIGGSILASLPTFQQMWISKEEYDESGPSIVHRK 374

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0017022 "myosin binding" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IDA

GENEDB_PFALCIPARUM|PFL2215w PFL2215w "actin" [Plasmodium falciparum (taxid:5833)]

 Score = 170 (64.9 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/101 (32%), Positives = 54/101 (53%)

Query:     2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
             G+     + I+ C ++ +  LY NIV++GG   + GI +R+  D+ TLAP    + VV P
Sbjct:   274 GIHTTTFNSIKKCDVDIRKDLYGNIVLSGGTTMYEGIGERLTRDITTLAPSTMKIKVVAP 333

Query:    62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                    W GG ++S    F    +TKEEY+E G ++ + +
Sbjct:   334 PERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRK 374

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005884 "actin filament" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D864	ARP6_MOUSE	No assigned EC number	0.5523	1.0	0.2651	yes	N/A
Q9DEE9	ARP6_CHICK	No assigned EC number	0.5714	1.0	0.2651	yes	N/A
Q9GZN1	ARP6_HUMAN	No assigned EC number	0.5714	1.0	0.2651	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
smart00268	373	smart00268, ACTIN, Actin	1e-24
pfam00022	367	pfam00022, Actin, Actin	5e-21
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	3e-19
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	4e-19
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	1e-18
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	1e-14
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	6e-13
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	1e-09

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score = 94.6 bits (236), Expect = 1e-24
 Identities = 32/103 (31%), Positives = 55/103 (53%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
            G+ E + + I+ C ++ +  LYENIV++GG     G  +R+E +++ LAP +  V V+ 
Sbjct: 270 KGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA 329

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
           P       W GG +++    F    +TK+EYEE G  +   + 
Sbjct: 330 PPERKYSVWLGGSILASLSTFEDMWITKKEYEESGSQIVERKC 372

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score = 85.0 bits (211), Expect = 5e-21
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
            G+ E I D I +C ++ +P L  NIV+TGG   F G  +R+E ++  LAP    V ++ 
Sbjct: 263 AGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIA 322

Query: 61  PSNPMTY-AWEGGK-LMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
           P N   Y AW GG  L SL   F    V+K+EYEE G ++   + 
Sbjct: 323 PPNERKYSAWIGGSILASL-GTFQQMWVSKQEYEEHGSSVVERKC 366

Length = 367

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 80.5 bits (199), Expect = 3e-19
 Identities = 34/100 (34%), Positives = 55/100 (55%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E +   I+ C  + +  LY NIV+TGG     G  +R++ ++ +LAP  + V+V+ P
Sbjct: 342 GLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPP 401

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYE 101
            +P   AW G  +++    F    +TKEEYEE G  +  E
Sbjct: 402 PDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQE 441

Length = 444

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 20/117 (17%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRT------------ 48
             + E + D I+SCP++ +  LY+NIV++GG   F G   R++ DVR             
Sbjct: 291 TPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEEL 350

Query: 49  ----LAPDEFDVNVVLPSNPMT-YA-WEGGKLMSLDPEFYSFVVTKEEYEEEGLALC 99
               L P   DVNVV  S+P   YA W GG +++  PEF     TK EY+E G ++C
Sbjct: 351 SGGKLKPIPIDVNVV--SHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSIC 405

Length = 414

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E     I  C ++ +  LY NIV++GG   + G+ +R+  ++ TLAP    + VV P
Sbjct: 276 GIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAP 335

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
                  W GG ++S  P F    VTKEEY+E G
Sbjct: 336 PERKYSVWIGGSILSSLPTFQQMWVTKEEYDESG 369

Length = 378

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 67.4 bits (164), Expect = 1e-14
 Identities = 29/101 (28%), Positives = 53/101 (52%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 333

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 334 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 374

Length = 376

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 62.7 bits (152), Expect = 6e-13
 Identities = 28/102 (27%), Positives = 54/102 (52%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           +G+SE IV  I    M+ +  LY +IV++GG   F G  DR+ +++R  AP +  + +  
Sbjct: 277 LGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA 336

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
           P       + GG +++    F    ++K+E++E G  + + +
Sbjct: 337 PPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRK 378

Length = 380

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+       I+ C ++ +  L  NIV++GG   F GI +R+ +++  L P +  + V  P
Sbjct: 273 GIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAP 332

Query: 62  SNPMTYAWEGGK----LMSLDPEFYSFVVTKEEYEEEGLALCYER 102
            +    AW GG     L +  P++    + ++EY+E+G ++ + +
Sbjct: 333 PDRRFSAWIGGSIQCTLSTQQPQW----IKRQEYDEQGPSIVHRK 373

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PTZ00452	375	actin; Provisional	100.0
PTZ00466	380	actin-like protein; Provisional	100.0
PTZ00281	376	actin; Provisional	100.0
KOG0676|consensus	372		100.0
PTZ00004	378	actin-2; Provisional	100.0
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	100.0
PTZ00280	414	Actin-related protein 3; Provisional	100.0
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	100.0
KOG0679|consensus	426		99.97
KOG0680|consensus	400		99.97
COG5277	444	Actin and related proteins [Cytoskeleton]	99.97
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	99.96
KOG0681|consensus	645		99.89
KOG0677|consensus	389		99.88
KOG0678|consensus	415		99.77
KOG0797|consensus	618		99.59
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	99.17
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	99.12
PRK13930	335	rod shape-determining protein MreB; Provisional	99.09
PRK13929	335	rod-share determining protein MreBH; Provisional	99.06
PRK13927	334	rod shape-determining protein MreB; Provisional	99.06
PRK13928	336	rod shape-determining protein Mbl; Provisional	98.88
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	98.45
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	98.3
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	98.18
PRK09472	420	ftsA cell division protein FtsA; Reviewed	97.61
CHL00094	621	dnaK heat shock protein 70	97.24
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	97.21
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	97.1
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	97.1
PTZ00400	663	DnaK-type molecular chaperone; Provisional	97.05
PRK01433	595	hscA chaperone protein HscA; Provisional	97.03
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	96.92
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	96.86
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	96.84
PRK13411	653	molecular chaperone DnaK; Provisional	96.83
PLN03184	673	chloroplast Hsp70; Provisional	96.75
PRK05183	616	hscA chaperone protein HscA; Provisional	96.67
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	96.65
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	96.58
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	96.57
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.55
PRK13410	668	molecular chaperone DnaK; Provisional	96.48
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	96.42
PRK11678	450	putative chaperone; Provisional	96.27
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	96.24
PTZ00009	653	heat shock 70 kDa protein; Provisional	96.16
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	96.13
PRK13317	277	pantothenate kinase; Provisional	95.8
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	95.66
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	95.17
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	94.39
PRK13917	344	plasmid segregation protein ParM; Provisional	92.83
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	91.61
PF03702	364	UPF0075: Uncharacterised protein family (UPF0075);	89.1
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	88.86
PRK05082	291	N-acetylmannosamine kinase; Provisional	88.28
PRK09585	365	anmK anhydro-N-acetylmuramic acid kinase; Reviewed	83.67
PF02782	198	FGGY_C: FGGY family of carbohydrate kinases, C-ter	83.0
PF06406	318	StbA: StbA protein; InterPro: IPR009440 This entry	82.83
PRK09698	302	D-allose kinase; Provisional	81.19

>PTZ00452 actin; Provisional

Probab=100.00  E-value=3.7e-37  Score=229.69  Aligned_cols=104  Identities=24%  Similarity=0.513  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||+++|.+||++||+|+|++|++||+|+||+|+||||.+||++||+.++|...+++|..++++.+++|+|||++|++++
T Consensus       272 ~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~  351 (375)
T PTZ00452        272 AGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLST  351 (375)
T ss_pred             CChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccc
Confidence            48999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |+++||||+||+|+|+++++|||+
T Consensus       352 f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        352 QQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             hhhhEeEHHHHhccCcceeeeecC
Confidence            999999999999999999999985

>PTZ00466 actin-like protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=226.40  Aligned_cols=104  Identities=27%  Similarity=0.519  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||+++|.+||++||.|.|++|++||+|+||+|++|||.+||++||+.++|...+++|..+++|.+++|+|||++|++++
T Consensus       277 ~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~  356 (380)
T PTZ00466        277 LGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLAT  356 (380)
T ss_pred             CCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccc
Confidence            48999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |++.||||+||+|+|+++++|||+
T Consensus       357 f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        357 FKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             hhhhEeEHHHHhhhCcHhheeecC
Confidence            999999999999999999999985

>PTZ00281 actin; Provisional

Probab=100.00  E-value=2.6e-36  Score=225.09  Aligned_cols=104  Identities=28%  Similarity=0.608  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||+++|.+||.+||.|+|+.|++||+|+||+|+||||.+||++||+.++|...+++|..+++|.+++|+|||++|++++
T Consensus       273 ~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~  352 (376)
T PTZ00281        273 AGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLST  352 (376)
T ss_pred             CCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCccc
Confidence            48999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |++.||||+||+|+|+++++|||+
T Consensus       353 f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        353 FQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             HhhceeeHHHHhhhCchheeeecC
Confidence            999999999999999999999985

>KOG0676|consensus

Probab=100.00  E-value=4.1e-36  Score=222.69  Aligned_cols=104  Identities=34%  Similarity=0.646  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||++++.+||.+||.|+|++||+||+|+||+|++|||.+||++||+.+.|...+++|.+++++.+++|+||||+|++++
T Consensus       269 ~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslst  348 (372)
T KOG0676|consen  269 PGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLST  348 (372)
T ss_pred             CchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecch
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |+++||||+||+|.|+.++||||+
T Consensus       349 fq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  349 FQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             HhhccccHHHHhhhCCceeeeccC
Confidence            999999999999999999999996

>PTZ00004 actin-2; Provisional

Probab=100.00  E-value=1.8e-35  Score=220.55  Aligned_cols=104  Identities=33%  Similarity=0.627  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||+++|.+||.+||.|+|+.|++||+|+||+|++|||.+||++||+.++|...+++|..+++|.+++|+|||++|++++
T Consensus       275 ~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~  354 (378)
T PTZ00004        275 PGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPT  354 (378)
T ss_pred             CChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccc
Confidence            48999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |++.||||+||+|+|+++++|||+
T Consensus       355 f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        355 FQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             hhhhEeEHHHHhhhCcceEEeecC
Confidence            999999999999999999999985

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=100.00  E-value=4.7e-35  Score=217.83  Aligned_cols=104  Identities=36%  Similarity=0.672  Sum_probs=99.0

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC-CCcccceehhhhhcccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS-NPMTYAWEGGKLMSLDP   79 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~-~~~~~aW~G~s~~a~l~   79 (105)
                      +||+++|.+||++||.|.|+.|++||+|+||+|++|||.+||++||+.+.|...+++|..++ +|.+++|+|||++|+++
T Consensus       289 ~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~  368 (393)
T PF00022_consen  289 MGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS  368 (393)
T ss_dssp             SCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred             chhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence            38999999999999999999999999999999999999999999999999998899999998 99999999999999999


Q ss_pred             cccccceeHHHHHhhChhHHhhhcC
Q psy8375          80 EFYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        80 ~~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      +|+++||||+||+|+|+++++|||+
T Consensus       369 ~f~~~~itr~eYeE~G~~~i~rkc~  393 (393)
T PF00022_consen  369 SFQSFWITREEYEEYGPSIIHRKCF  393 (393)
T ss_dssp             GGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred             cccceeeeHHHHhCcCcceeeecCC
Confidence            9999999999999999999999995

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>PTZ00280 Actin-related protein 3; Provisional

Probab=100.00  E-value=3.8e-34  Score=215.47  Aligned_cols=101  Identities=38%  Similarity=0.682  Sum_probs=95.9

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhC----------------CCCceeEEeCCCCCc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLA----------------PDEFDVNVVLPSNPM   65 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~----------------p~~~~v~v~~~~~~~   65 (105)
                      ||+++|.++|++||+|+|++|++||+|+||+|+||||.+||++||+.++                |...+++|..++++.
T Consensus       292 gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~  371 (414)
T PTZ00280        292 PLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQR  371 (414)
T ss_pred             CHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccc
Confidence            8999999999999999999999999999999999999999999999986                345678899888889


Q ss_pred             ccceehhhhhcccccccccceeHHHHHhhChhHHhhh
Q psy8375          66 TYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER  102 (105)
Q Consensus        66 ~~aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~~~k  102 (105)
                      +++|+|||++|++++|+++||||+||+|+|+++++++
T Consensus       372 ~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~  408 (414)
T PTZ00280        372 YAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN  408 (414)
T ss_pred             eeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence            9999999999999999999999999999999999886

>smart00268 ACTIN Actin

Probab=100.00  E-value=1.7e-33  Score=208.66  Aligned_cols=103  Identities=31%  Similarity=0.637  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcccccc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEF   81 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~~   81 (105)
                      ||+++|.++|.+||+|+|++|++||+||||+|++|||.+||++||+.+.|...+++|..+++|.+++|.|||++|++++|
T Consensus       271 ~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f  350 (373)
T smart00268      271 GIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTF  350 (373)
T ss_pred             CHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccch
Confidence            89999999999999999999999999999999999999999999999999888899998899999999999999999999


Q ss_pred             cccceeHHHHHhhChhHHhhhcC
Q psy8375          82 YSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        82 ~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      ++.||||+||+|+|+++++|||+
T Consensus       351 ~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      351 EDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             hhhEEEHHHHhhhCcceEEeecC
Confidence            99999999999999999999995

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0679|consensus

Probab=99.97  E-value=9e-33  Score=203.35  Aligned_cols=103  Identities=23%  Similarity=0.509  Sum_probs=98.3

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC---CCcccceehhhhhcc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS---NPMTYAWEGGKLMSL   77 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~---~~~~~aW~G~s~~a~   77 (105)
                      .|+++++..||..||.|+|..|+.|||+|||+|+|+||.+||++||...+|.. ++++++..   ++++++|+||||+|+
T Consensus       320 lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILAS  398 (426)
T KOG0679|consen  320 LGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILAS  398 (426)
T ss_pred             cCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhc
Confidence            48999999999999999999999999999999999999999999999999987 99998765   789999999999999


Q ss_pred             cccccccceeHHHHHhhCh-hHHhhhcC
Q psy8375          78 DPEFYSFVVTKEEYEEEGL-ALCYERFD  104 (105)
Q Consensus        78 l~~~~~~~itk~ey~e~G~-~~~~~k~~  104 (105)
                      |.+|+++||+|+||+|.|. ..+.+||+
T Consensus       399 LgtFqq~WiSKqEYEE~G~d~~ve~rc~  426 (426)
T KOG0679|consen  399 LGTFQQLWISKQEYEEVGKDQLVERRCP  426 (426)
T ss_pred             cccHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence            9999999999999999999 78889996

>KOG0680|consensus

Probab=99.97  E-value=5.1e-32  Score=196.31  Aligned_cols=105  Identities=37%  Similarity=0.753  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||+|+|.+||+.||.++|+.|+.||+++||+++||||.+||.+||+.++|.++.++|..|.||..-+|.||+-++++++
T Consensus       296 ~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~  375 (400)
T KOG0680|consen  296 PGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDS  375 (400)
T ss_pred             CCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcCC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFDI  105 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~~  105 (105)
                      |...||||+||+|+|++++.+|+++
T Consensus       376 ~~~~~itR~dy~E~G~~~~~~~~~~  400 (400)
T KOG0680|consen  376 FEKAVITREDYEEHGPSWCTKKRFI  400 (400)
T ss_pred             hhcceecHhhHhhcCchhhhhhccC
Confidence            9999999999999999999999985

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=99.97  E-value=2.2e-31  Score=202.02  Aligned_cols=104  Identities=33%  Similarity=0.608  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      .||++++.++|+.||.|.|+.|++||+||||+|++|||.+||++||+.+.|..+.+.|..+++|.+.+|+|||++|++++
T Consensus       341 ~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~  420 (444)
T COG5277         341 AGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLET  420 (444)
T ss_pred             cchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |+.+||||+||+|+|++++++++.
T Consensus       421 ~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         421 FQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             hhheEeeHHHhhhhhhHHHhhccC
Confidence            999999999999999999999874

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=99.96  E-value=2.7e-30  Score=191.63  Aligned_cols=102  Identities=33%  Similarity=0.658  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCC--CceeEEeCCCCCcccceehhhhhccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPD--EFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~--~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      .||+++|.++|.+||+|.|+.+++||+||||+|++|||.+||++||..+.|.  ...+++..+++|.+++|+|||++|++
T Consensus       268 ~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~  347 (371)
T cd00012         268 VGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL  347 (371)
T ss_pred             CCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence            3899999999999999999999999999999999999999999999999997  56678888889999999999999999


Q ss_pred             ccccccceeHHHHHhhChhHHhhh
Q psy8375          79 PEFYSFVVTKEEYEEEGLALCYER  102 (105)
Q Consensus        79 ~~~~~~~itk~ey~e~G~~~~~~k  102 (105)
                      ++|+++||||+||+|+|+++++||
T Consensus       348 ~~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         348 STFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             hhhhheEeeHHHHhhhCchhEecC
Confidence            999999999999999999999886

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0681|consensus

Probab=99.89  E-value=1.3e-23  Score=160.32  Aligned_cols=103  Identities=29%  Similarity=0.629  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||.|++..++.+.|.|.+..|.+||+||||+|++||+++||.+||....|...+|+|+.+.||..+||.||+.+|...+
T Consensus       537 aGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~  616 (645)
T KOG0681|consen  537 AGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPT  616 (645)
T ss_pred             hhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhc
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERF  103 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~  103 (105)
                      |...|+||+||+|.|+.++++.+
T Consensus       617 f~~~~~Tr~dy~E~G~e~~kEh~  639 (645)
T KOG0681|consen  617 FTLTQITRKDYEEKGEEYLKEHV  639 (645)
T ss_pred             cchhhhhHHhhhhhhHHHHHHHh
Confidence            99999999999999999998764

>KOG0677|consensus

Probab=99.88  E-value=6.6e-23  Score=146.33  Aligned_cols=102  Identities=25%  Similarity=0.517  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCC-----------CCceeEEeCCCCCcccce
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAP-----------DEFDVNVVLPSNPMTYAW   69 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p-----------~~~~v~v~~~~~~~~~aW   69 (105)
                      +|++|+++++|+..|.|.|.++|++|+|+||+++.||+..||++||+++.-           ..+++++-.||.+.+.++
T Consensus       273 ~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVf  352 (389)
T KOG0677|consen  273 PGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVF  352 (389)
T ss_pred             CcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEE
Confidence            589999999999999999999999999999999999999999999998621           135688888998999999


Q ss_pred             ehhhhhccc-ccccccceeHHHHHhhChhHHhhh
Q psy8375          70 EGGKLMSLD-PEFYSFVVTKEEYEEEGLALCYER  102 (105)
Q Consensus        70 ~G~s~~a~l-~~~~~~~itk~ey~e~G~~~~~~k  102 (105)
                      +||+++|.+ ..-+++|+||+||+|.|++.+.+.
T Consensus       353 lGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~  386 (389)
T KOG0677|consen  353 LGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL  386 (389)
T ss_pred             EchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence            999999986 456789999999999999988764

>KOG0678|consensus

Probab=99.77  E-value=1.6e-19  Score=131.79  Aligned_cols=100  Identities=35%  Similarity=0.604  Sum_probs=88.8

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCC--------------CCceeEEeCCCCCccc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAP--------------DEFDVNVVLPSNPMTY   67 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p--------------~~~~v~v~~~~~~~~~   67 (105)
                      .|+++|..+|++||.|.|+.||+||+++||.+++++|..|+++++..+..              ....|+|+...-.+++
T Consensus       294 ~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~a  373 (415)
T KOG0678|consen  294 PLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTA  373 (415)
T ss_pred             chHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcc
Confidence            47899999999999999999999999999999999999999999987532              2234666666667899


Q ss_pred             ceehhhhhcccccccccceeHHHHHhhChhHHhh
Q psy8375          68 AWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYE  101 (105)
Q Consensus        68 aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~~~  101 (105)
                      +|.||+++++.+.|-..+-||++|+|+||++++.
T Consensus       374 vwfggs~lastpef~~~~~tk~~yee~g~si~r~  407 (415)
T KOG0678|consen  374 VWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT  407 (415)
T ss_pred             eeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence            9999999999999999999999999999999875

>KOG0797|consensus

Probab=99.59  E-value=7.9e-16  Score=117.47  Aligned_cols=103  Identities=18%  Similarity=0.397  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHcC-CcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCC----ceeEEeCCC---CCcccceehhh
Q psy8375           2 GVSECIVDVIRSC-PMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE----FDVNVVLPS---NPMTYAWEGGK   73 (105)
Q Consensus         2 gi~~~I~~si~~~-~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~----~~v~v~~~~---~~~~~aW~G~s   73 (105)
                      ++...|..||..+ ..|.++.||+.|.++||..++|||.+-|+..+....|..    ..|.|+.++   ||++-+|+||+
T Consensus       505 ~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaa  584 (618)
T KOG0797|consen  505 ALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAA  584 (618)
T ss_pred             ccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchh
Confidence            3456688888776 568899999999999999999999999999998877752    257888776   79999999999


Q ss_pred             hhcccccccccceeHHHHHhhChhHHhhhcC
Q psy8375          74 LMSLDPEFYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        74 ~~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      +++.++.-++.||++.||..+|.++++.||+
T Consensus       585 Ila~l~~~~ELwI~~~dW~~~G~RvL~~k~~  615 (618)
T KOG0797|consen  585 ILAILDFVRELWIENSDWQVHGVRVLQYKKY  615 (618)
T ss_pred             hhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence            9999999999999999999999999999975

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=99.17  E-value=2.4e-11  Score=89.82  Aligned_cols=68  Identities=26%  Similarity=0.445  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|.+.|.++++++|||+..++++| |+||||+|+++||+++|++++        .+.|..+++|.+++-.|+..+..
T Consensus       252 ~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~--------~~pV~va~~P~~~va~G~~~~l~  320 (326)
T PF06723_consen  252 QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET--------GVPVRVADDPLTAVARGAGKLLE  320 (326)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence            367889999999999999999987 999999999999999999999        67888889999999999876543

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=99.12  E-value=3.9e-11  Score=88.24  Aligned_cols=68  Identities=18%  Similarity=0.323  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhc-CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYE-NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~-nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ++.+.|.+++++++++.+.++++ ||+||||+|++|||.+||++++        .+.|....+|..++-.|+++++.
T Consensus       258 ~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~--------~~~v~~~~~P~~~va~Ga~~~~~  326 (333)
T TIGR00904       258 QIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET--------GLPVIVADDPLLCVAKGTGKALE  326 (333)
T ss_pred             HHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH--------CCCceecCChHHHHHHHHHHHHh
Confidence            47788999999999999999997 7999999999999999999999        34556667888999999998753

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=99.09  E-value=6.8e-11  Score=86.70  Aligned_cols=68  Identities=21%  Similarity=0.359  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ++.+.|.++|++|+++.+.+++.| |+|+||+|++|||.+||++++.        +++..+.+|..++-.|+++++.
T Consensus       259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~--------~~v~~~~~p~~ava~Ga~~~~~  327 (335)
T PRK13930        259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG--------LPVHIAEDPLTCVARGTGKALE  327 (335)
T ss_pred             HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence            478899999999999999999998 9999999999999999999983        3455556788888899998774

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=99.06  E-value=9.3e-11  Score=86.60  Aligned_cols=65  Identities=23%  Similarity=0.453  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHcCCcchHHHhhc-CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhh
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYE-NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLM   75 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~-nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~   75 (105)
                      |.+.|.++|++||++.+.++++ +|+||||+|++|||.+||++++.        +.|....+|..++-.|+...
T Consensus       258 i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~--------~~v~~~~~P~~~Va~Ga~~~  323 (335)
T PRK13929        258 ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV--------VPVHVAANPLESVAIGTGRS  323 (335)
T ss_pred             HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC--------CCceeCCCHHHHHHHHHHHH
Confidence            6788999999999999999998 69999999999999999999993        34445568888999998764

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=99.06  E-value=9e-11  Score=86.18  Aligned_cols=68  Identities=19%  Similarity=0.327  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +|.+.|.++|++++++.+.+++++ |+|+||+|++|||.+||++++.        ++|....+|..++-.|+++++.
T Consensus       255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~--------~~v~~~~~P~~ava~Ga~~~~~  323 (334)
T PRK13927        255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG--------LPVHVAEDPLTCVARGTGKALE  323 (334)
T ss_pred             HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC--------CCcEecCCHHHHHHHHHHHHHh
Confidence            478899999999999999999985 9999999999999999999983        3445556788889999988764

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=98.88  E-value=1.5e-09  Score=80.04  Aligned_cols=67  Identities=19%  Similarity=0.389  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHcCCcchHHHhhc-CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYE-NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~-nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.+.|.+++.+++++.+.++++ +|+||||+|++||+.++|++++.        +.|....+|..++-.|+++.+.
T Consensus       255 i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~--------~~v~~~~~P~~ava~Gaa~~~~  322 (336)
T PRK13928        255 IVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK--------VPVYIAEDPISCVALGTGKMLE  322 (336)
T ss_pred             HHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence            6778899999999999999998 79999999999999999999993        3445556789999999998654

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=98.45  E-value=8.5e-08  Score=70.63  Aligned_cols=66  Identities=27%  Similarity=0.457  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhh
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLM   75 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~   75 (105)
                      +|.+.|...+.+||||+-.+.+++ |+++||+|++.||++.|.+|.        .+.|..+++|..++-+|+...
T Consensus       262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et--------~~pv~ia~~pL~~Va~G~G~~  328 (342)
T COG1077         262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET--------GVPVIIADDPLTCVAKGTGKA  328 (342)
T ss_pred             HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc--------CCeEEECCChHHHHHhccchh
Confidence            578899999999999999999999 999999999999999999988        778888889998888887653

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=98.30  E-value=8e-07  Score=63.09  Aligned_cols=42  Identities=29%  Similarity=0.638  Sum_probs=35.8

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhh
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKL   74 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~   74 (105)
                      .|+||||+|++||+.++|++++        .+.|..+.+|.+++-.|+++
T Consensus       197 ~v~LtGG~a~ipgl~e~l~~~l--------g~~v~~~~~P~~~va~Gaa~  238 (239)
T TIGR02529       197 DLYLVGGACSFSGFADVFEKQL--------GLNVIKPQHPLYVTPLGIAM  238 (239)
T ss_pred             EEEEECchhcchhHHHHHHHHh--------CCCcccCCCCCeehhheeec
Confidence            6999999999999999999998        44455677899998888764

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=98.18  E-value=2.1e-06  Score=61.80  Aligned_cols=45  Identities=27%  Similarity=0.468  Sum_probs=37.6

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      +.|+||||+|++||+.+.+++.+        .+.|..+++|.+++-.|+++++
T Consensus       223 ~~IvLtGG~s~lpgl~e~l~~~l--------g~~v~~~~~P~~~~a~Gaa~~~  267 (267)
T PRK15080        223 EDIYLVGGTCCLPGFEEVFEKQT--------GLPVHKPQHPLFVTPLGIALSC  267 (267)
T ss_pred             CEEEEECCcccchhHHHHHHHHh--------CCCcccCCCchHHHHHHHHhhC
Confidence            57999999999999999999998        3344557789999999987653

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=97.61  E-value=6.1e-05  Score=57.41  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=47.8

Q ss_pred             HHHHHHHHHcCCcchHHH-----hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC----------CCCcccc
Q psy8375           4 SECIVDVIRSCPMEAQPH-----LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP----------SNPMTYA   68 (105)
Q Consensus         4 ~~~I~~si~~~~~d~r~~-----l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~----------~~~~~~a   68 (105)
                      .+.|.+++..++.+++..     +-..|+||||+|++||+.+.+++.+..      ++++..|          .+|.|++
T Consensus       305 ~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~at  378 (420)
T PRK09472        305 LNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYST  378 (420)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHH
Confidence            345666666666655533     344599999999999999999988853      2333222          3688888


Q ss_pred             eehhhhhcc
Q psy8375          69 WEGGKLMSL   77 (105)
Q Consensus        69 W~G~s~~a~   77 (105)
                      -.|...++.
T Consensus       379 a~Gl~~~~~  387 (420)
T PRK09472        379 AVGLLHYGK  387 (420)
T ss_pred             HHHHHHHhh
Confidence            889887765

>CHL00094 dnaK heat shock protein 70

Probab=97.24  E-value=0.00036  Score=55.66  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=38.0

Q ss_pred             hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375          22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus        22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      -...|+|+||+|.+|++.+.+.+.+..        .+....+|..++..||++.|..
T Consensus       328 ~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~  376 (621)
T CHL00094        328 DIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV  376 (621)
T ss_pred             hCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence            347899999999999999999987732        2233446778889999988763

>TIGR01174 ftsA cell division protein FtsA

Probab=97.21  E-value=0.00019  Score=53.69  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             HHHH-HHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhh
Q psy8375           5 ECIV-DVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRT   48 (105)
Q Consensus         5 ~~I~-~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~   48 (105)
                      +.|. +.+.+.+.+  .. ..+ |+||||+|++||+.+++.+.+..
T Consensus       298 ~~i~~~~L~~~~~~--~~-i~~gIvLtGG~S~ipgi~~~l~~~~~~  340 (371)
T TIGR01174       298 EIVKQKELRKSGFK--EE-LNGGIVLTGGGAQLEGIVELAEKVFDN  340 (371)
T ss_pred             HHHHHHHHHhcCCc--cc-CCCEEEEeChHHcccCHHHHHHHHhCC
Confidence            4444 555555443  23 355 99999999999999999998843

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=97.10  E-value=0.00063  Score=54.32  Aligned_cols=63  Identities=11%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.+++......  ..-...|+|+||+|.+|.+.+++.+.+..        .+....+|..++..||++.|.
T Consensus       311 ~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeava~GAa~~aa  373 (627)
T PRK00290        311 EPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPNKGVNPDEVVAIGAAIQGG  373 (627)
T ss_pred             HHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCCcCcCChHHHHHhHHHHHH
Confidence            3445555544332  22347899999999999999999887621        223345677888999998765

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=97.10  E-value=0.00064  Score=53.87  Aligned_cols=64  Identities=11%  Similarity=0.169  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.|.+++......  ..-...|+|+||+|.+|.+.+.+.+.+.        ..+....+|..++..||++.|..
T Consensus       309 ~~i~~~l~~a~~~--~~~i~~V~LvGGssriP~v~~~i~~~f~--------~~~~~~~~pdeava~GAa~~aa~  372 (595)
T TIGR02350       309 EPVRQALKDAGLS--ASDIDEVILVGGSTRIPAVQELVKDFFG--------KEPNKSVNPDEVVAIGAAIQGGV  372 (595)
T ss_pred             HHHHHHHHHcCCC--HhHCcEEEEECCcccChHHHHHHHHHhC--------CcccCCcCcHHHHHHHHHHHHHH
Confidence            3444555444322  2335789999999999999999988763        12334456778889999987753

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=97.05  E-value=0.00092  Score=53.86  Aligned_cols=64  Identities=13%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.|.+++.+..  +...-...|+|+||+|.+|.+.+.|.+.+..        .+....+|..++-.||++.|..
T Consensus       352 ~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~  415 (663)
T PTZ00400        352 EPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV  415 (663)
T ss_pred             HHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence            34455555543  2233357899999999999999999887732        2233446777888898887753

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=97.03  E-value=0.00062  Score=54.25  Aligned_cols=48  Identities=17%  Similarity=0.335  Sum_probs=37.6

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      ...|+|+||+|.+|.+.+.|.+.+.        ..+....+|..++-.||++.|..
T Consensus       309 Id~ViLvGGssriP~v~~~l~~~f~--------~~~~~~~npdeaVA~GAAi~a~~  356 (595)
T PRK01433        309 IDGVILVGGATRIPLIKDELYKAFK--------VDILSDIDPDKAVVWGAALQAEN  356 (595)
T ss_pred             CcEEEEECCcccChhHHHHHHHHhC--------CCceecCCchHHHHHHHHHHHHH
Confidence            4779999999999999999987762        23344557788888999987763

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=96.92  E-value=0.0014  Score=46.52  Aligned_cols=42  Identities=29%  Similarity=0.485  Sum_probs=36.4

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhh
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKL   74 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~   74 (105)
                      .|+++||.+..+++.++|.+.|        ...|..++++++.+=+|+++
T Consensus       206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl  247 (248)
T TIGR00241       206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAAL  247 (248)
T ss_pred             CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHh
Confidence            6999999999999999999988        45677788888888888875

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=96.86  E-value=0.00059  Score=52.03  Aligned_cols=48  Identities=19%  Similarity=0.356  Sum_probs=41.8

Q ss_pred             hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +-+.|+++||.++.+|+.+.|++.|        ..++..|++|++..-+||+++|+
T Consensus       355 i~~~VvftGGva~N~gvv~ale~~L--------g~~iivPe~pq~~GAiGAAL~A~  402 (404)
T TIGR03286       355 VREPVILVGGTSLIEGLVKALGDLL--------GIEVVVPEYSQYIGAVGAALLAS  402 (404)
T ss_pred             CCCcEEEECChhhhHHHHHHHHHHh--------CCcEEECCcccHHHHHHHHHHhc
Confidence            3345999999999999999999998        46677889999999999999874

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=96.84  E-value=0.0012  Score=52.51  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=43.3

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.|.+++.....  ...-...|+|+||+|.+|++.+++.+.+..        .+....+|..++-.||++.|..
T Consensus       297 ~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~~  360 (599)
T TIGR01991       297 SICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQADL  360 (599)
T ss_pred             HHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHHH
Confidence            344444444322  222347799999999999999999987632        1233457778888999887753

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PRK13411 molecular chaperone DnaK; Provisional

Probab=96.83  E-value=0.0013  Score=52.96  Aligned_cols=64  Identities=11%  Similarity=0.201  Sum_probs=43.3

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.+++....  +...-...|+|+||+|.+|.+.++|.+.+..       ..+....+|..++-.||++.|.
T Consensus       312 ~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~~-------~~~~~~~npdeaVA~GAAi~aa  375 (653)
T PRK13411        312 EPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFGG-------KQPDRSVNPDEAVALGAAIQAG  375 (653)
T ss_pred             HHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcCC-------cCcCCCCCchHHHHHHHHHHHH
Confidence            34445554443  3334457899999999999999999876631       1233344677788888888775

>PLN03184 chloroplast Hsp70; Provisional

Probab=96.75  E-value=0.0019  Score=52.21  Aligned_cols=63  Identities=11%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.+++.....+.  .=...|+|+||+|.+|.+.++|.+.+..        .+...-+|..++-.||++.|.
T Consensus       350 ~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~fg~--------~~~~~~npdeaVA~GAAi~aa  412 (673)
T PLN03184        350 TPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLTGK--------DPNVTVNPDEVVALGAAVQAG  412 (673)
T ss_pred             HHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHHHHhCC--------CcccccCcchHHHHHHHHHHH
Confidence            34445555544332  2237899999999999999999887732        112233567778888888765

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=96.67  E-value=0.0017  Score=51.88  Aligned_cols=47  Identities=15%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ...|+|+||+|.+|.+.++|.+.+..        .+....+|..++-.||++.|.
T Consensus       329 i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~  375 (616)
T PRK05183        329 VKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQAD  375 (616)
T ss_pred             CCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHH
Confidence            46799999999999999999887632        122345677888889998775

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=96.65  E-value=0.0017  Score=47.68  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=40.2

Q ss_pred             HhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEe-CCCCCcccceehhhhhcc
Q psy8375          21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVV-LPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        21 ~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~-~~~~~~~~aW~G~s~~a~   77 (105)
                      .+-+.|+++||.+.-+|+.+.|+++|        ..+|. .+++|++..-+|++++|.
T Consensus       238 ~i~~~v~~~GGva~N~~l~~al~~~L--------g~~v~~~p~~p~~~GAlGAAL~A~  287 (293)
T TIGR03192       238 GVEEGFFITGGIAKNPGVVKRIERIL--------GIKAVDTKIDSQIAGALGAALFGY  287 (293)
T ss_pred             CCCCCEEEECcccccHHHHHHHHHHh--------CCCceeCCCCccHHHHHHHHHHHH
Confidence            34557999999999999999999998        33444 366799999999999884

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=96.58  E-value=0.0028  Score=51.17  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=36.4

Q ss_pred             hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      -...|+|+||+|.+|.+.+.+.+.+..        .....-+|..++-.||++.|.
T Consensus       353 dId~VvLVGGssriP~V~~~l~~~fg~--------~~~~~~nPdeaVA~GAAi~a~  400 (657)
T PTZ00186        353 EINDVVLVGGMTRMPKVVEEVKKFFQK--------DPFRGVNPDEAVALGAATLGG  400 (657)
T ss_pred             hCCEEEEECCcccChHHHHHHHHHhCC--------CccccCCCchHHHHhHHHHHH
Confidence            346799999999999999999987732        112234677788889888875

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=96.57  E-value=0.0029  Score=47.91  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=41.2

Q ss_pred             eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          26 IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        26 Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      |+++||++...++..-+++.|        ..+|..|++|++.--.|++++++
T Consensus       346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~  389 (396)
T COG1924         346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK  389 (396)
T ss_pred             EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence            999999999999999999998        67899999999999999999886

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.55  E-value=0.0022  Score=46.42  Aligned_cols=50  Identities=16%  Similarity=0.221  Sum_probs=39.9

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .+|+++||.+.-+++.+.|+++|...   ...+.|..+++|++..-+||++++
T Consensus       213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~  262 (262)
T TIGR02261       213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG  262 (262)
T ss_pred             CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence            46999999999999999999988432   124556667889999888988764

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PRK13410 molecular chaperone DnaK; Provisional

Probab=96.48  E-value=0.0027  Score=51.29  Aligned_cols=50  Identities=14%  Similarity=0.149  Sum_probs=36.3

Q ss_pred             HhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375          21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus        21 ~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      .-...|+|+||+|.+|.+.+.+.+.+..        .+....+|..++-.||++.|..
T Consensus       327 ~dId~VvLVGGssRiP~V~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~  376 (668)
T PRK13410        327 EDIDEVVLVGGSTRMPMVQQLVRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI  376 (668)
T ss_pred             hhCcEEEEECCccccHHHHHHHHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence            3446899999999999999998876521        1223335677788888887754

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=96.42  E-value=0.0024  Score=50.17  Aligned_cols=64  Identities=13%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .++|.+++......  ..=...|+|+||+|.+|-+.+.|.+.+.        -.+....+|..++-.||+++|.
T Consensus       312 ~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~--------~~~~~~~~p~~aVA~GAa~~a~  375 (602)
T PF00012_consen  312 IEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG--------KKISKSVNPDEAVARGAALYAA  375 (602)
T ss_dssp             HHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT--------SEEB-SS-TTTHHHHHHHHHHH
T ss_pred             cccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc--------cccccccccccccccccccchh
Confidence            34555556554322  2234679999999999999999877663        1234445677888899998875

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK11678 putative chaperone; Provisional

Probab=96.27  E-value=0.0038  Score=48.29  Aligned_cols=60  Identities=15%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ++|.+++......     ...|+|+||+|.+|++.+.+.+.+..       ..+.. .+|-.++-.|.++.|.
T Consensus       387 ~~i~~~L~~a~~~-----~d~VvLvGGsSriP~V~~~l~~~fg~-------~~v~~-g~~~~sVa~Gla~~a~  446 (450)
T PRK11678        387 ELVQLALDQAQVK-----PDVIYLTGGSARSPLIRAALAQQLPG-------IPIVG-GDDFGSVTAGLARWAQ  446 (450)
T ss_pred             HHHHHHHHHcCCC-----CCEEEEcCcccchHHHHHHHHHHCCC-------CcEEe-CCCcchHHHHHHHHHH
Confidence            4455555544322     25699999999999999998876621       22222 3566777888887764

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=96.24  E-value=0.0049  Score=47.19  Aligned_cols=52  Identities=10%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      +-..|+++||.++-+++...|++.|....+   ..+|..|++|++..-+|++++|
T Consensus       381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a  432 (432)
T TIGR02259       381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA  432 (432)
T ss_pred             CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence            446799999999999999999999954332   3457778899999999998875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=96.16  E-value=0.0081  Score=48.38  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=42.7

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.+++.....+.  .-...|+|+||+|.+|.+.+.|.+.+..       ..+....+|..++-.||++.|.
T Consensus       317 ~~i~~~L~~a~~~~--~~i~~ViLvGGssriP~v~~~i~~~f~~-------~~~~~~~npdeaVA~GAa~~aa  380 (653)
T PTZ00009        317 QPVEKVLKDAGMDK--RSVHEVVLVGGSTRIPKVQSLIKDFFNG-------KEPCKSINPDEAVAYGAAVQAA  380 (653)
T ss_pred             HHHHHHHHHcCCCH--HHCcEEEEECCCCCChhHHHHHHHHhCC-------CCCCCCCCcchHHhhhhhhhHH
Confidence            34555555554332  3347899999999999999999876632       1123334677788888888764

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=96.13  E-value=0.0049  Score=45.65  Aligned_cols=26  Identities=19%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             HhhcCeEEecCCCCCccHHHHHHHHH
Q psy8375          21 HLYENIVITGGCCGFAGIRDRVESDV   46 (105)
Q Consensus        21 ~l~~nIvl~GG~s~~~g~~~Rl~~el   46 (105)
                      .-.+.|+||||++.++||.+.|.++|
T Consensus       273 ~~i~~I~L~Ggga~l~gL~~~l~~~l  298 (340)
T PF11104_consen  273 ESIERIYLSGGGARLPGLAEYLSEEL  298 (340)
T ss_dssp             ---SEEEEESGGGGSTTHHHHHHHHH
T ss_pred             CCCCEEEEECCccchhhHHHHHHHHH
Confidence            34567999999999999999999999

>PRK13317 pantothenate kinase; Provisional

Probab=95.80  E-value=0.01  Score=43.22  Aligned_cols=71  Identities=21%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHcCCcc-hHHHhhcCeEEec-CCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           2 GVSECIVDVIRSCPME-AQPHLYENIVITG-GCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         2 gi~~~I~~si~~~~~d-~r~~l~~nIvl~G-G~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ||..+|.+.|..+-.- .|..-.++|+++| |.+..|++.++|.+.+..     ...++..|++|++..-+||++++.
T Consensus       201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~  273 (277)
T PRK13317        201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT  273 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence            3445555555443211 1223337899999 799999999999987742     235677788999999999998764

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=95.66  E-value=0.018  Score=42.44  Aligned_cols=25  Identities=16%  Similarity=0.477  Sum_probs=23.0

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHh
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVR   47 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~   47 (105)
                      .+.|+||||++.++||.+.|++++.
T Consensus       283 i~~I~LtGgga~~~gl~~~l~~~l~  307 (348)
T TIGR01175       283 LDGLVLAGGGATLSGLDAAIYQRLG  307 (348)
T ss_pred             cceEEEECccccchhHHHHHHHHHC
Confidence            5679999999999999999999994

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=95.17  E-value=0.0053  Score=43.90  Aligned_cols=65  Identities=20%  Similarity=0.390  Sum_probs=41.4

Q ss_pred             HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375           4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus         4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .+.|...+.+.+.....     |+++||...-+.+.+.|.+.|++..+..   .+..+..|.+.+..||.++|
T Consensus       207 a~~i~~~~~~~~~~~~~-----v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA  271 (271)
T PF01869_consen  207 AELIKAVLKRLGPEKEP-----VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA  271 (271)
T ss_dssp             HHHHHHHHHTCTCCCCS-----EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCe-----EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence            34444445554433211     9999999887777777766665555432   33445578899999998875

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=94.39  E-value=0.044  Score=42.20  Aligned_cols=66  Identities=24%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeC----------CCCCcccceehhhh
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL----------PSNPMTYAWEGGKL   74 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~----------~~~~~~~aW~G~s~   74 (105)
                      ++|...|.+.-..  ..+-..|+||||++++||+.+-..+-+..      ++++-.          ..+|.|++-.|.-.
T Consensus       305 ~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~p~fs~avGl~~  376 (418)
T COG0849         305 ELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARNPAFSTAVGLLL  376 (418)
T ss_pred             HHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccCchhhhhHHHHH
Confidence            3444444444332  45667799999999999998766655542      233322          23588999999877


Q ss_pred             hccc
Q psy8375          75 MSLD   78 (105)
Q Consensus        75 ~a~l   78 (105)
                      ++..
T Consensus       377 ~~~~  380 (418)
T COG0849         377 YGAL  380 (418)
T ss_pred             HHhh
Confidence            6663

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=92.83  E-value=0.053  Score=40.47  Aligned_cols=44  Identities=16%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.+|+|+||++.+  +.+.|+    +..|.     +...++|+++.-+|-..++.
T Consensus       292 ~d~IiL~GGGA~l--l~~~lk----~~f~~-----~~~~~~p~~ANa~G~~~~g~  335 (344)
T PRK13917        292 FDRVIVTGGGANI--FFDSLS----HWYSD-----VEKADESQFANVRGYYKYGE  335 (344)
T ss_pred             CCEEEEECCcHHH--HHHHHH----HHcCC-----eEEcCChHHHHHHHHHHHHH
Confidence            5679999999976  444444    44442     34557899998888777665

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=91.61  E-value=0.23  Score=35.26  Aligned_cols=42  Identities=24%  Similarity=0.485  Sum_probs=34.0

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhh
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGK   73 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s   73 (105)
                      ..++|+||.++.||+.+-++++|        ..+|+.|..|.|..=+|-+
T Consensus       228 ~dl~lvGGac~~~g~e~~Fe~~l--------~l~v~~P~~p~y~TPLgIA  269 (277)
T COG4820         228 TDLWLVGGACMQPGVEELFEKQL--------ALQVHLPQHPLYMTPLGIA  269 (277)
T ss_pred             cceEEecccccCccHHHHHHHHh--------ccccccCCCcceechhhhh
Confidence            45889999999999999999999        5667777777776655543

>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P

Probab=89.10  E-value=0.32  Score=36.90  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=25.3

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHh
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR   47 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~   47 (105)
                      +.|.+++.+.+.+     ...|++|||++.=+-|.+||++.+.
T Consensus       272 ~sI~~~i~~~~~~-----~~~v~v~GGGa~N~~L~~~L~~~l~  309 (364)
T PF03702_consen  272 QSIADAIRRFPPQ-----PDEVYVCGGGARNPFLMERLQERLP  309 (364)
T ss_dssp             HHHHHHHHHH-TT------EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred             HHHHHHHHhcCCC-----CceEEEECCCcCCHHHHHHHHhhCC
Confidence            3445555554433     4579999999999999999998874

It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=88.86  E-value=0.57  Score=34.47  Aligned_cols=45  Identities=24%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      +++|+|+||++.+      +++.|+...|.   .+|...+||+++.-+|-..++
T Consensus       274 ~~~Iil~GGGa~l------l~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~g  318 (320)
T TIGR03739       274 IQNIVLVGGGAFL------FKKAVKAAFPK---HRIVEVDEPMFANVRGFQIAG  318 (320)
T ss_pred             ccEEEEeCCcHHH------HHHHHHHHCCC---CeeEecCCcHHHHHHHHHHhh
Confidence            6689999999962      33445555553   345556788888777754443

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=88.28  E-value=1.3  Score=31.76  Aligned_cols=51  Identities=16%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.|+.+..+-|-+++.+.++.. +....+.|........++-.||+.++
T Consensus       236 ~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~  286 (291)
T PRK05082        236 CVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWA  286 (291)
T ss_pred             EEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHh
Confidence            3777777666666777777777664 22124555555545566677887665

>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed

Probab=83.67  E-value=1.5  Score=33.35  Aligned_cols=23  Identities=13%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             cCeEEecCCCCCccHHHHHHHHH
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDV   46 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el   46 (105)
                      +.|++|||++.=|-|.+||+.++
T Consensus       288 ~~vlv~GGGa~N~~Lm~~L~~~l  310 (365)
T PRK09585        288 DELLVCGGGARNPTLMERLAALL  310 (365)
T ss_pred             CEEEEECCCcchHHHHHHHHHhc
Confidence            35999999999999999999887

>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=83.00  E-value=0.37  Score=32.44  Aligned_cols=46  Identities=17%  Similarity=0.120  Sum_probs=32.5

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .+.|+++||.++-+-+.+.+.+=+.        ..|..++. ...+-.|++++|.
T Consensus       150 ~~~i~~~GG~~~n~~~~q~~Advl~--------~~V~~~~~-~e~~a~GaA~~A~  195 (198)
T PF02782_consen  150 IRRIRVSGGGAKNPLWMQILADVLG--------RPVVRPEV-EEASALGAALLAA  195 (198)
T ss_dssp             ESEEEEESGGGGSHHHHHHHHHHHT--------SEEEEESS-STHHHHHHHHHHH
T ss_pred             ceeeEeccccccChHHHHHHHHHhC--------CceEeCCC-CchHHHHHHHHHH
Confidence            5679999999999988888877663        33333332 3456778887764

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....

>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []

Probab=82.83  E-value=0.88  Score=33.54  Aligned_cols=42  Identities=19%  Similarity=0.412  Sum_probs=23.6

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceeh
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEG   71 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G   71 (105)
                      +++|+|+||++.+  |.+.|.+..    +.. .-++..+.+|+++--.|
T Consensus       273 ~~~I~~vGGGA~l--l~~~Ik~~~----~~~-~~~i~i~~~pqfAnv~G  314 (318)
T PF06406_consen  273 IDRIFFVGGGAIL--LKDAIKEAF----PVP-NERIVIVDDPQFANVRG  314 (318)
T ss_dssp             -SEEEEESTTHHH--HHHHHHHHH----T---GGGEE--SSGGGHHHHH
T ss_pred             CCeEEEECCcHHH--HHHHHHHhh----CCC-CCcEEECCCchhhHHHH
Confidence            4679999999943  344444333    210 12466677899886665

They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.

>PRK09698 D-allose kinase; Provisional

Probab=81.19  E-value=5  Score=28.92  Aligned_cols=52  Identities=13%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             CeEEecCCCCCcc-HHHHHHHHHhhhCCC---CceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAG-IRDRVESDVRTLAPD---EFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g-~~~Rl~~el~~~~p~---~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+.... +.++|.+++++....   ...++|..+.....+.-+||+.++
T Consensus       239 ~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~  294 (302)
T PRK09698        239 AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA  294 (302)
T ss_pred             EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence            3677777666543 567888888876531   223555555444556667887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		1e-12
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		1e-12
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		1e-12
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		1e-12
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		1e-12
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		2e-12
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		3e-12
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		3e-12
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		3e-12
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		3e-12
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		3e-12
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		3e-12
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		3e-12
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		3e-12
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		3e-12
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		3e-12
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		3e-12
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		3e-12
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		4e-12
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		4e-12
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		4e-12
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		4e-12
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		4e-12
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		6e-12
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		6e-12
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		1e-11
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		1e-11
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		1e-11
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		1e-11
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		1e-11
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		1e-11
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		2e-11
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		3e-11
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		3e-11
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		3e-11
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		3e-11
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		3e-11
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		3e-11
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		3e-11
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		1e-10
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		7e-10
3qb0_A	498	Crystal Structure Of Actin-Related Protein Arp4 Fro		8e-06
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		3e-05
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		3e-05

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 266 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 325
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 326 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 366

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ +   + I  C ++ +  LY NIV++GG   F GI +R++ ++  LAP    V ++ P
Sbjct: 273 GIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHK 373

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 54/101 (53%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 272 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 331
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 332 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 372

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 275 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 334
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 335 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 375

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 274 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 333
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 334 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 374

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 373

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 274 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 333
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 334 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 374

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 275 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 334
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 335 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 375

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 257 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 316
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 317 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 357

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 272 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 331
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 332 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 372

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKHEYDESGPSIVHRK 373

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKHEYDESGPSIVHRK 373

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 3   VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRT-------------- 48
           +SE + +VI++CP++ +  LY+NIV++GG   F     R++ D++               
Sbjct: 296 ISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSG 355
Query: 49  --LAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALC 99
             L P   DV V+         W GG +++  PEFY    TK++YEE G ++C
Sbjct: 356 GRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSIC 408

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N+V++GG   F GI DR+  ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++KEEY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 373

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 54/101 (53%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ +   + I  C ++ +  LY NIV++GG   F GI +R++ ++  LAP    V ++ P
Sbjct: 273 GIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHK 373

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 272 GIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 331
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 332 PERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRK 372

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ +   + I  C ++ +  LY NIV++GG   F GI +R++ ++  LAP    V ++ P
Sbjct: 268 GIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAP 327
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
                  W GG +++    F    ++K+EY+E G
Sbjct: 328 PERKYSVWIGGSILASLTTFQQMWISKQEYDESG 361

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ +   + I  C ++ +  LY NIV++GG   F GI +R++ ++  LAP    V ++ P
Sbjct: 268 GIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAP 327
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
                  W GG +++    F    ++K+EY+E G
Sbjct: 328 PERKYSVWIGGSILASLTTFQQMWISKQEYDESG 361

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 268 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 327
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 328 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 368

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 269 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 328
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 329 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 369

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 269 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 328
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 329 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 369

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    ++K+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 373

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 373

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCY 100
                  W GG +++    F    +TK+EY+E G ++ +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 371

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCY 100
                  W GG +++    F    +TK+EY+E G ++ +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 371

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 274 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 333
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCY 100
                  W GG +++    F    +TK+EY+E G ++ +
Sbjct: 334 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 372

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 268 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 327
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
                  W GG +++    F    +TK+EY+E G
Sbjct: 328 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAG 361

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 268 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 327
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
                  W GG +++    F    ++K+EY+E G
Sbjct: 328 PERKYSVWIGGSILASLSTFQQMWISKQEYDESG 361

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 267 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 326
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
                  W GG +++    F    +TK+EY+E G
Sbjct: 327 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAG 360

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 5   ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEF---------- 54
           E + +V++S P++ +  LY+NIV++GG   F    +R++ D++ +  +            
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 55  ----DVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFDI 105
               DVNV+         W GG L++  PEF S+  TK +YEE G ++   R+ I
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIA-RRYQI 422

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 266 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 325
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEE 93
                  W GG +++    F    +TK+EY+E
Sbjct: 326 PERKYSVWIGGSILASLSTFQQMWITKQEYDE 357

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 268 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 327
Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEY 91
                  W GG +++    F    +TK+EY
Sbjct: 328 PERKYSVWIGGSILASLSTFQQMWITKQEY 357

>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPD-EFDVNVV 59
           +G+++ +   I S  ++ +  L  N+V+TGG     G+ DR+ +++  + P  +F +   
Sbjct: 392 IGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTT 451
Query: 60  LPSNPMTY-AWEGGKLMSLDPEFYSFVVTKEEYEEEGLA-LCYERF 103
             +    Y +W GG +++    F+   V K+EYEE G+  L  +RF
Sbjct: 452 GHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTL----------- 49
           +GV+E + + I++  ++ +   Y++IV++GG   + G+  R+E +++ L           
Sbjct: 276 VGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVE 335
Query: 50  APDEFDVNVVLPSNPMTYAWEGGKLMS-LDPEFYSFVVTKEEYEEEGL 96
              +F + +  P       + GG +++ +  +  +F +T++EY+E+G+
Sbjct: 336 KLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGV 383

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTL----------- 49
           +GV+E + + I++  ++ +   Y++IV++GG   + G+  R+E +++ L           
Sbjct: 276 VGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVE 335
Query: 50  APDEFDVNVVLPSNPMTYAWEGGKLMS-LDPEFYSFVVTKEEYEEEGL 96
              +F + +  P       + GG +++ +  +  +F +T++EY+E+G+
Sbjct: 336 KLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGV 383

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	1e-23
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	1e-21
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	3e-21
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	9e-20
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	3e-19

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 28/101 (27%), Positives = 53/101 (52%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
           G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ P
Sbjct: 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332

Query: 62  SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
                  W GG +++    F    +TK+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 373

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 14/113 (12%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE-------- 53
            + E + +V++S P++ +  LY+NIV++GG   F    +R++ D++ +  +         
Sbjct: 306 PLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLS 365

Query: 54  ------FDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCY 100
                  DVNV+         W GG L++  PEF S+  TK +YEE G ++  
Sbjct: 366 GAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIAR 418

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 85.2 bits (211), Expect = 3e-21
 Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 12/111 (10%)

Query: 2   GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE-------- 53
           GV+E + + I++  ++ +   Y++IV++GG   + G+  R+E +++ L  +         
Sbjct: 277 GVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEK 336

Query: 54  ---FDVNVVLPSNPMTYAWEGGK-LMSLDPEFYSFVVTKEEYEEEGLALCY 100
              F + +  P       + GG  L  +  +  +F +T++EY+E+G+ +  
Sbjct: 337 LSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLE 387

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score = 81.6 bits (201), Expect = 9e-20
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
           +G+++ +   I S  ++ +  L  N+V+TGG     G+ DR+ +++  + P      ++ 
Sbjct: 392 IGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-LKFRILT 450

Query: 61  PSNPMTY---AWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
             + +     +W GG +++    F+   V K+EYEE G+      
Sbjct: 451 TGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLND 495

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR------------- 47
             +SE + +VI++CP++ +  LY+NIV++GG   F     R++ D++             
Sbjct: 294 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL 353

Query: 48  ---TLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
               L P   DV V+         W GG +++  PEFY    TK++YEE G ++C   
Sbjct: 354 SGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHN 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	100.0
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	100.0
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	100.0
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	100.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.97
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	99.97
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.88
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	99.27
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	98.77
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	98.77
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	98.49
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	98.4
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	98.17
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	97.73
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	97.72
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	97.64
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.62
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	97.42
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	97.41
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	97.4
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	96.9
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	96.46
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	96.05
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	95.94
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	95.62
3js6_A	355	Uncharacterized PARM protein; partition, segregati	94.05
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	93.87
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	93.3
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	91.48
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	91.11
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	90.59
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	90.36
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	90.12
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	89.39
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	89.3
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	88.72
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	87.6
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	87.59
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	86.74
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	83.66
2ap1_A	327	Putative regulator protein; zinc binding protein,	80.77
3qbx_A	371	Anhydro-N-acetylmuramic acid kinase; acetate and s	80.28

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=236.17  Aligned_cols=103  Identities=26%  Similarity=0.537  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC---CCCcccceehhhhhcc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP---SNPMTYAWEGGKLMSL   77 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~---~~~~~~aW~G~s~~a~   77 (105)
                      +||+++|.+||++||.|+|+.||+||+|+||+|+||||.+||++||+.++| .++++|.++   ++|.+++|+|||+||+
T Consensus       392 ~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilas  470 (498)
T 3qb0_A          392 IGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTS  470 (498)
T ss_dssp             CCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEec
Confidence            489999999999999999999999999999999999999999999999999 789999987   6889999999999999


Q ss_pred             cccccccceeHHHHHhhCh-hHHhhhcC
Q psy8375          78 DPEFYSFVVTKEEYEEEGL-ALCYERFD  104 (105)
Q Consensus        78 l~~~~~~~itk~ey~e~G~-~~~~~k~~  104 (105)
                      +++|+++||||+||+|+|+ .++|+||+
T Consensus       471 l~~f~~~witk~EY~E~G~~~iv~~kc~  498 (498)
T 3qb0_A          471 LGTFHQLWVGKKEYEEVGVERLLNDRFR  498 (498)
T ss_dssp             CHHHHHTSEEHHHHHTTCCHHHHHHTTC
T ss_pred             CcchhceEEEHHHHhhhCcHhhccccCc
Confidence            9999999999999999999 89999995

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.8e-37  Score=229.50  Aligned_cols=104  Identities=31%  Similarity=0.563  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhC--------------CCCceeEEeCCCCCcc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLA--------------PDEFDVNVVLPSNPMT   66 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~--------------p~~~~v~v~~~~~~~~   66 (105)
                      +||+++|.+||++||+|+|++||+||+||||+|+||||.+||++||+.++              |...+|+|.++++|.+
T Consensus       305 ~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~  384 (427)
T 3dwl_A          305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN  384 (427)
T ss_dssp             SCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTT
T ss_pred             CCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCcccc
Confidence            48999999999999999999999999999999999999999999999987              4567899999999999


Q ss_pred             cceehhhhhcccccccccceeHHHHHhhChhHHhhhcC
Q psy8375          67 YAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        67 ~aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      ++|+|||+||++++|+++||||+||+|+|++++||++.
T Consensus       385 s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             HHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             ceecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence            99999999999999999999999999999999999863

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.9e-36  Score=229.62  Aligned_cols=104  Identities=21%  Similarity=0.487  Sum_probs=98.3

Q ss_pred             CCHHHHHHHHHHcCCc-chHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCc-----eeEEeCCC---CCcccceeh
Q psy8375           1 MGVSECIVDVIRSCPM-EAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEF-----DVNVVLPS---NPMTYAWEG   71 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~-d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~-----~v~v~~~~---~~~~~aW~G   71 (105)
                      +||+++|.+||.+||. |+|+.||+||+||||+|+||||.+||++||+.++|..+     +|+|.+++   ||.+++|+|
T Consensus       478 ~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~G  557 (593)
T 4fo0_A          478 LGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKG  557 (593)
T ss_dssp             CCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHH
T ss_pred             CCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehh
Confidence            4899999999999984 99999999999999999999999999999999999753     58898876   799999999


Q ss_pred             hhhhcccccccccceeHHHHHhhChhHHhhhcC
Q psy8375          72 GKLMSLDPEFYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        72 ~s~~a~l~~~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      ||+||++++|+++||||+||+|+|++++|+||+
T Consensus       558 gSilasL~~f~~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          558 GAVLACLDTTQELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             HHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred             hHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence            999999999999999999999999999999996

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=100.00  E-value=2.2e-33  Score=207.13  Aligned_cols=104  Identities=27%  Similarity=0.591  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      .||+++|.++|++||+|+|+++++||+||||+|++|||.+||++||..+.|...+++|..+++|.+++|+||+++|++++
T Consensus       272 ~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l~~  351 (375)
T 2fxu_A          272 AGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST  351 (375)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGG
T ss_pred             CCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCccc
Confidence            37999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHhhhcC
Q psy8375          81 FYSFVVTKEEYEEEGLALCYERFD  104 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~~k~~  104 (105)
                      |+++||||+||+|+|++++|+||+
T Consensus       352 f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          352 FQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             GGGGSEEHHHHHHHCGGGGC----
T ss_pred             HhhceeeHHHHhhhChHHHhhhcc
Confidence            999999999999999999999995

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.97  E-value=2.7e-32  Score=203.31  Aligned_cols=102  Identities=33%  Similarity=0.674  Sum_probs=97.5

Q ss_pred             CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhC----------------CCCceeEEeCCCCCc
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLA----------------PDEFDVNVVLPSNPM   65 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~----------------p~~~~v~v~~~~~~~   65 (105)
                      ||+++|.++|++||+|+|+++++||+||||+|++|||.+||++||..++                |...+++|..+++|.
T Consensus       295 ~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~  374 (418)
T 1k8k_A          295 PISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQR  374 (418)
T ss_dssp             CHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccc
Confidence            7999999999999999999999999999999999999999999999885                666789999999999


Q ss_pred             ccceehhhhhcccccccccceeHHHHHhhChhHHhhhc
Q psy8375          66 TYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF  103 (105)
Q Consensus        66 ~~aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~~~k~  103 (105)
                      +++|+|||++|++++|+++||||+||+|+|++++|+||
T Consensus       375 ~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~  412 (418)
T 1k8k_A          375 YAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP  412 (418)
T ss_dssp             THHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred             cceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence            99999999999999999999999999999999999976

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=99.97  E-value=1.9e-32  Score=203.70  Aligned_cols=101  Identities=23%  Similarity=0.516  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhC-----------CCCceeEEeCCCCCcccce
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLA-----------PDEFDVNVVLPSNPMTYAW   69 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~-----------p~~~~v~v~~~~~~~~~aW   69 (105)
                      .||+++|.++|++||+|+|+++++||+||||+|++|||.+||++||..++           |...+++|..+++|.+++|
T Consensus       276 ~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w  355 (394)
T 1k8k_B          276 VGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVF  355 (394)
T ss_dssp             CCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC-------------
T ss_pred             CCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEE
Confidence            48999999999999999999999999999999999999999999999988           8777899998999999999


Q ss_pred             ehhhhhccccccc-ccceeHHHHHhhChhHHhh
Q psy8375          70 EGGKLMSLDPEFY-SFVVTKEEYEEEGLALCYE  101 (105)
Q Consensus        70 ~G~s~~a~l~~~~-~~~itk~ey~e~G~~~~~~  101 (105)
                      +||+++|++++|+ ++||||+||+|+|++++|+
T Consensus       356 ~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          356 LGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             ---------------------------------
T ss_pred             hhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence            9999999999999 9999999999999999988

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.88  E-value=4.7e-23  Score=160.74  Aligned_cols=104  Identities=16%  Similarity=0.346  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHc-C-CcchHH--HhhcCeEEecCCCCCccHHHHHHHHHhhhCCC------------------------
Q psy8375           1 MGVSECIVDVIRS-C-PMEAQP--HLYENIVITGGCCGFAGIRDRVESDVRTLAPD------------------------   52 (105)
Q Consensus         1 ~gi~~~I~~si~~-~-~~d~r~--~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~------------------------   52 (105)
                      ++|..+|.+||.+ | ..|..+  +||+||+++||+|+||||..-|...|...-|.                        
T Consensus       475 ~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~  554 (655)
T 4am6_A          475 APLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGH  554 (655)
T ss_dssp             CCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHST
T ss_pred             ccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhh
Confidence            4899999999984 4 335554  99999999999999999998877777653331                        


Q ss_pred             -------------------------------------------CceeEEeCCCCC---cccceehhhhhcccccccccce
Q psy8375          53 -------------------------------------------EFDVNVVLPSNP---MTYAWEGGKLMSLDPEFYSFVV   86 (105)
Q Consensus        53 -------------------------------------------~~~v~v~~~~~~---~~~aW~G~s~~a~l~~~~~~~i   86 (105)
                                                                 ..+|+|.+++.+   ++++|+|||+||++++|+++||
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wI  634 (655)
T 4am6_A          555 YVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFI  634 (655)
T ss_dssp             TCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCE
T ss_pred             hccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheee
Confidence                                                       134788888854   8999999999999999999999


Q ss_pred             eHHHHHhhChhHHhhhcC
Q psy8375          87 TKEEYEEEGLALCYERFD  104 (105)
Q Consensus        87 tk~ey~e~G~~~~~~k~~  104 (105)
                      ||+||+|.|++++++||.
T Consensus       635 t~~Eyde~G~~il~~k~~  652 (655)
T 4am6_A          635 TNSDWDVHGSRILQYKCI  652 (655)
T ss_dssp             EHHHHHHHGGGGGGTSCS
T ss_pred             cHHHHhhhcchheEeccc
Confidence            999999999999999984

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=99.27  E-value=2.7e-12  Score=92.88  Aligned_cols=73  Identities=16%  Similarity=0.317  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHcCCcchHHHhh-cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc-c
Q psy8375           2 GVSECIVDVIRSCPMEAQPHLY-ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD-P   79 (105)
Q Consensus         2 gi~~~I~~si~~~~~d~r~~l~-~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l-~   79 (105)
                      ++.+.|.++|.+++++.+.+++ ++|+|+||+|++|||.++|++++.        .+|..+.+|.+++|.|+++++.. +
T Consensus       256 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~--------~~v~~~~~p~~ava~Gaa~~a~~~~  327 (344)
T 1jce_A          256 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG--------ISVIRSEEPLTAVAKGAGMVLDKVN  327 (344)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS--------SCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHC--------CCccccCChHHHHHHHHHHHHhChH
Confidence            3678899999999988888888 799999999999999999999993        33555678999999999999884 5


Q ss_pred             ccc
Q psy8375          80 EFY   82 (105)
Q Consensus        80 ~~~   82 (105)
                      .|+
T Consensus       328 ~~~  330 (344)
T 1jce_A          328 ILK  330 (344)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            553

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=98.77  E-value=2.7e-09  Score=78.02  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.+.|.++|.+++.  .....++|+|+||+|++|++.++|++++.        ..+..+.+|..++|.|++++|.+
T Consensus       316 i~~~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~--------~~v~~~~~p~~ava~Gaa~~a~~  381 (383)
T 1dkg_D          316 SIELLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFG--------KEPRKDVNPDEAVAIGAAVQGGV  381 (383)
T ss_dssp             HHHHHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHS--------SCCBCSSCTTTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhC--------CCCCCCcChHHHHHHHHHHHHHh
Confidence            56778888888763  33456899999999999999999999993        23556678999999999998864

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=98.77  E-value=3.5e-09  Score=74.07  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      +.+.|.+++.+++      ..++|+|+||+|.+|||.++|++++        ...|..+.+|.+++++|+++++
T Consensus       213 i~~~i~~~l~~~~------~~~~ivL~GG~a~~~~l~~~l~~~l--------~~~v~~~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          213 MALIVKEVIKNYD------QTLPVYVVGGTAYLTGFSEEFSRFL--------GKEVQVPIHPLLVTPLGIALFG  272 (272)
T ss_dssp             HHHHHHHHTTTSC------SSCCEEEESGGGGSTTHHHHHHHHH--------SSCCBCCSSGGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcC------CCCEEEEECCccchhhHHHHHHHHh--------CCCccccCChHHHHHHHHHhcC
Confidence            4455556666555      1358999999999999999999999        3455667899999999999864

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=98.40  E-value=7.5e-08  Score=73.39  Aligned_cols=65  Identities=9%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.+.|.++|..++.  .....++|+|+||+|.+|++.++|++++.        ..+..+.+|..++|.||++++.
T Consensus       285 i~~~i~~~L~~a~~--~~~~i~~VvLvGG~s~~p~v~~~l~~~f~--------~~~~~~~~p~~aVa~Gaa~~a~  349 (509)
T 2v7y_A          285 TMGPVRQALQDAGL--TPADIDKVILVGGSTRIPAVQEAIKRELG--------KEPHKGVNPDEVVAIGAAIQGG  349 (509)
T ss_dssp             THHHHHHHHHHHTC--CGGGCSEEEEESGGGGCHHHHHHHHHHHS--------SCCBCCSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC--ChhHCcEEEEECCcccChHHHHHHHHHhC--------CCcCcCCCchhhhHhhHHHHHH
Confidence            45677777777653  34456899999999999999999999983        2344567899999999999875

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=98.17  E-value=3.8e-07  Score=66.96  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.+.|.++|..+..+  ....++|+|+||+|.+|++.++|++.+..       .+|..+.+|..+++.|++++|.+
T Consensus       334 i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~-------~~v~~~~~p~~ava~Gaa~~a~~  400 (404)
T 3i33_A          334 TLEPVEKALRDAKLD--KGQIQEIVLVGGSTRIPKIQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAAI  400 (404)
T ss_dssp             THHHHHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTTT-------CCCBCSSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--HhhCCEEEEECCccccHHHHHHHHHHcCC-------CCCCCCcCHHHHHHHHHHHHHHH
Confidence            345667777665433  34458899999999999999999988721       33556678999999999998764

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=97.73  E-value=7.5e-06  Score=63.68  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=48.9

Q ss_pred             HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      .+.|.++|..+...  ..-...|+|+||+|.+|++.+++.+.+.        ..+....+|..+++.||++.+..
T Consensus       317 ~~~i~~~L~~a~~~--~~~i~~VvLvGG~srip~v~~~l~~~fg--------~~~~~~~npd~aVA~GAa~~a~~  381 (605)
T 2kho_A          317 IEPLKVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFG--------KEPRKDVNPDEAVAIGAAVQGGV  381 (605)
T ss_dssp             TSHHHHHHHTTTCC--TTTCSEEEEESGGGGSHHHHHHHHHHHS--------SCCBCSSCTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCC--hhhCceEEEECCcccChHHHHHHHHhcC--------CCcCcCCCcchHHHHHHHHHHHH
Confidence            34567777766432  2334789999999999999999999883        22345568889999999998753

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=97.72  E-value=8e-06  Score=62.89  Aligned_cols=64  Identities=14%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.++|..+..  ...-.+.|+|+||+|.+|++.++|.+.+..       ..+..+.+|..+++.|+++.+.
T Consensus       315 ~~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~f~~-------~~v~~~~np~~aVA~Gaa~~a~  378 (554)
T 1yuw_A          315 DPVEKALRDAKL--DKSQIHDIVLVGGSTRIPKIQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA  378 (554)
T ss_dssp             HHHHHHHHHTTC--CGGGCCEEEEESGGGGCHHHHHHHHHHTTT-------CCCBCCSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC--ChhhCcEEEEECCcccChHHHHHHHHHcCC-------CccccCCCchhHHHHHHHHHHH
Confidence            345556655432  223457899999999999999999987732       2344566889999999999875

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=97.64  E-value=1.4e-05  Score=58.85  Aligned_cols=69  Identities=12%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEE------eCCCCCcccceehhhhhc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNV------VLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v------~~~~~~~~~aW~G~s~~a   76 (105)
                      +.++|.++|......  ....+.|+|+||+|.+|++.++|++.+..      +++|      ....+|..++-.|+++.+
T Consensus       327 i~~~i~~~l~~~~~~--~~~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~  398 (409)
T 4gni_A          327 FNRLVESAVKKAGLD--PLDVDEVIMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQA  398 (409)
T ss_dssp             HHHHHHHHHHHTTCC--GGGCCEEEEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHh
Confidence            345666666665322  33457899999999999999999987732      2345      344578899999999988


Q ss_pred             ccc
Q psy8375          77 LDP   79 (105)
Q Consensus        77 ~l~   79 (105)
                      ...
T Consensus       399 ~~~  401 (409)
T 4gni_A          399 SLI  401 (409)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            753

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.62  E-value=2e-05  Score=55.15  Aligned_cols=50  Identities=20%  Similarity=0.417  Sum_probs=41.8

Q ss_pred             HHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          20 PHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        20 ~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ....++|+|+||.+..|++.++|++++        ..++..|++|.+..-+|++++|.
T Consensus       204 ~~~~~~vvl~GGva~n~~lr~~l~~~~--------g~~~~~p~~p~~~~A~GAAl~A~  253 (276)
T 4ehu_A          204 IGVQRNVVMVGGVARNSGIVRAMAREI--------NTEIIVPDIPQLTGALGAALYAF  253 (276)
T ss_dssp             HCCCSSEEEESGGGGCHHHHHHHHHHH--------TSCEECCSSGGGHHHHHHHHHHH
T ss_pred             cccCCeEEEecCccchHHHHHHHHHHH--------CCCeeeCCCcchHHHHHHHHHHH
Confidence            334567999999999999999999887        45677888999888899999874

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=97.42  E-value=0.00012  Score=54.71  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             HHHHHHHHHcCC---cch-HHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeC-----C----------CCC
Q psy8375           4 SECIVDVIRSCP---MEA-QPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL-----P----------SNP   64 (105)
Q Consensus         4 ~~~I~~si~~~~---~d~-r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~-----~----------~~~   64 (105)
                      .+.|.++|....   ++. .......|+||||+|++||+.+.+++.+..      ++++..     |          .+|
T Consensus       306 ~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~------~vri~~~~~~~p~~~~~~~~~~~~P  379 (419)
T 4a2a_A          306 MSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS------PVRTGCYANSDRPSIINADEVANDP  379 (419)
T ss_dssp             HHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS------CEEECCGGGSSSCCCBTCHHHHTCG
T ss_pred             HHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC------CeEEEecCCCCchhccCcccccCCc
Confidence            455666666543   222 345667899999999999999999999843      344433     2          367


Q ss_pred             cccceehhhhhccc
Q psy8375          65 MTYAWEGGKLMSLD   78 (105)
Q Consensus        65 ~~~aW~G~s~~a~l   78 (105)
                      .|++-.|-.+++..
T Consensus       380 ~~~t~~Gl~~~~~~  393 (419)
T 4a2a_A          380 SFAAAFGNVFAVSE  393 (419)
T ss_dssp             GGHHHHHTTCC---
T ss_pred             hHHHHHHHHHHHhh
Confidence            88888887766643

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=97.41  E-value=4.7e-05  Score=60.04  Aligned_cols=63  Identities=10%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.++|......  ..-...|+|+||+|.+|++.++|.+.+.        ..+....+|..++..|+++.+.
T Consensus       319 ~~i~~~L~~a~l~--~~~I~~VvLvGGssriP~v~~~l~~~fg--------~~~~~~~nPdeaVA~GAa~~a~  381 (675)
T 3d2f_A          319 EPVTKALAQAKLS--AEEVDFVEIIGGTTRIPTLKQSISEAFG--------KPLSTTLNQDEAIAKGAAFICA  381 (675)
T ss_dssp             HHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHHT--------SCEECCSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC--hhhCcEEEEECCCccChHHHHHHHHhcC--------CCccccCCcchHHHHHHHHHHH
Confidence            4455555544321  1224689999999999999999999883        2344567889999999998775

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=97.40  E-value=4.7e-05  Score=55.26  Aligned_cols=45  Identities=9%  Similarity=0.131  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHh
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR   47 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~   47 (105)
                      +.+.|.++|..++...+....++|+|+||+|.+||+.+++++++.
T Consensus       287 i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~  331 (377)
T 2ych_A          287 LTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG  331 (377)
T ss_dssp             HHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence            344555566555444455667889999999999999999999994

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=96.90  E-value=0.00036  Score=54.23  Aligned_cols=63  Identities=11%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.+++......  ..-...|+|+||+|.+|++.+++.+.+.        ..+....+|..++-.|+++.|.
T Consensus       318 ~~v~~~L~~a~~~--~~~i~~VvLvGG~sriP~v~~~l~~~fg--------~~~~~~~nPdeaVA~GAai~a~  380 (605)
T 4b9q_A          318 EPLKVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFG--------KEPRKDVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             HHHHHHHHHTTCC--GGGCSEEEEESGGGGSHHHHHHHHHHHT--------SCCCSSSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--HHHCcEEEEeCCccCchHHHHHHHHHhc--------cCcCCCcChhHHHHHhHHHHHH
Confidence            3444555443322  1233679999999999999999998883        2234455788888889888765

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=96.46  E-value=0.00053  Score=49.50  Aligned_cols=46  Identities=15%  Similarity=0.341  Sum_probs=34.0

Q ss_pred             hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +...|+|+||+|.+  +.+.+++++    |    +++..+++|+++.-+|.-.++.
T Consensus       278 ~~~~IvltGGGA~l--~~~~l~~~~----~----~~v~v~~~P~~a~a~G~~~~~~  323 (329)
T 4apw_A          278 QLDSLIFIGGTTQK--LKEQISKTY----P----NNSIITNNSQWTTCEGLYKVAV  323 (329)
T ss_dssp             SCSEEEEESTTHHH--HHHHHHHHS----T----TCEECCSSGGGHHHHHHHHHHH
T ss_pred             HccEEEEECChHHH--HHHHHHHHc----C----CCCEecCCChhhHHHHHHHHHh
Confidence            35789999999998  446666554    2    2356678999999999876654

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=96.05  E-value=0.0015  Score=46.61  Aligned_cols=46  Identities=20%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      ..|+|+||+|.+  +.+.+.+    .++.. .-++..+++|+++.-+|+.+++
T Consensus       274 ~~vvl~GGga~l--l~~~l~~----~~~~~-~~~~~~~~~P~~a~A~G~~~~~  319 (320)
T 2zgy_A          274 THVMVIGGGAEL--ICDAVKK----HTQIR-DERFFKTNNSQYDLVNGMYLIG  319 (320)
T ss_dssp             CEEEEESTTHHH--HHHHHHH----TSCCC-GGGEECCSCGGGHHHHHHHHHH
T ss_pred             CeEEEECChHHH--HHHHHHH----HhCCC-CCceeeCCCcHHHHHHHHHHhc
Confidence            679999999976  5544444    44321 0035667789999999998765

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=95.94  E-value=0.0037  Score=44.67  Aligned_cols=49  Identities=22%  Similarity=0.083  Sum_probs=40.6

Q ss_pred             cCeEEecC-CCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          24 ENIVITGG-CCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        24 ~nIvl~GG-~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      ++|+++|| .+..|++.++|.+.+..     ...++..++++++..-+||+++++
T Consensus       238 ~~Vvf~Gg~l~~n~~l~~~l~~~~~~-----~~~~~~~p~~~~~~gAlGAaL~~~  287 (287)
T 2ews_A          238 ENIVYIGSSFHNNALLRKVVEDYTVL-----RGCKPYYVENGAFSGAIGALYLEK  287 (287)
T ss_dssp             CEEEEESGGGTTCHHHHHHHHHHHHH-----TTCEEEECTTGGGHHHHHHHHTCC
T ss_pred             CeEEEeCCchhcCHHHHHHHHHHHhh-----CCceEEECCCccHHHHHHHHHhCC
Confidence            47999999 99999999999987543     246778888999999999988763

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=95.62  E-value=0.0034  Score=44.03  Aligned_cols=47  Identities=21%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.|+++||.+..+++.+.+.+.|        ...|..++++++..=+|+++++..
T Consensus       210 ~~i~~~GG~a~n~~~~~~~~~~l--------g~~v~~p~~~~~~~AlGAAl~A~~  256 (270)
T 1hux_A          210 KDVVMTGGVAQNYGVRGALEEGL--------GVEIKTSPLAQYNGALGAALYAYK  256 (270)
T ss_dssp             SSEEEESGGGGCHHHHHHHHHHH--------CSCEECCGGGGGHHHHHHHHHHHH
T ss_pred             CeEEEeCccccCHHHHHHHHHHH--------CCCeEeCCCcchHhHHHHHHHHHH
Confidence            57999999999999999999988        344666777888788899998854

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=94.05  E-value=0.003  Score=46.09  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=33.8

Q ss_pred             HhhcCeEEecCCCCCcc--HHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375          21 HLYENIVITGGCCGFAG--IRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus        21 ~l~~nIvl~GG~s~~~g--~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.+..|+|+||+|.+++  +.+.+.+++    |.      .  ++|+++.-.|...++..
T Consensus       289 ~~~~~Ivl~GGGa~l~~~~l~~~i~~~~----~~------~--~~p~~anA~G~~~~~~~  336 (355)
T 3js6_A          289 NSIDRIIVTGGGANIHFDSLSHYYSDVF----EK------A--DDSQFSNVRGYEKLGEL  336 (355)
T ss_dssp             TSCSEEEEESTTHHHHHHHHHHHSSSCE----EC------C--SSGGGHHHHHHHHHHHH
T ss_pred             hhccEEEEECcchhcchhhHHHHHHHHC----CC------C--CCcHHHHHHHHHHHHHH
Confidence            44578999999999887  666655433    21      1  78999999998877653

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=93.87  E-value=0.0046  Score=44.75  Aligned_cols=47  Identities=23%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEE-eCCCCCcccceehhhhhcc
Q psy8375          22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNV-VLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v-~~~~~~~~~aW~G~s~~a~   77 (105)
                      ....|+|+||+|.+  +.+.+.++    +|.   +.+ ....+|.+++-.|...++.
T Consensus       296 ~i~~IvL~GGga~l--l~~~l~~~----~~~---~~i~~~~~~P~~ava~G~~~~~~  343 (346)
T 2fsj_A          296 RVTSLIPVGGGSNL--IGDRFEEI----APG---TLVKIKPEDLQFANALGYRDAAE  343 (346)
T ss_dssp             GEEEEEEESTTHHH--HGGGGGGG----STT---CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred             cccEEEEECCcHHH--HHHHHHHH----CcC---cEEeccCCCcHHHHHHHHHHHHh
Confidence            44789999999998  55444443    342   112 2256899998888876543

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=93.30  E-value=0.032  Score=41.11  Aligned_cols=73  Identities=11%  Similarity=-0.009  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHcCCc-chHHHhhcCeEEecC-CCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375           2 GVSECIVDVIRSCPM-EAQPHLYENIVITGG-CCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus         2 gi~~~I~~si~~~~~-d~r~~l~~nIvl~GG-~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      ||..+|.+.|..+-. -.++.=.++|+++|| .+.-|++.+.|.+.|.---..  .+++..++++++..-+||++.+
T Consensus       284 gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~  358 (360)
T 2i7n_A          284 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL  358 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence            455555555544321 113333458999999 999999999999988532211  3456667788999888988653

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=91.48  E-value=0.11  Score=40.62  Aligned_cols=46  Identities=17%  Similarity=0.151  Sum_probs=34.1

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeC-----CCCCcccceehhhh
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL-----PSNPMTYAWEGGKL   74 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~-----~~~~~~~aW~G~s~   74 (105)
                      ..|+||||+|+++|+.+-..+.|..     +.|++-.     ...|.|++-.|-..
T Consensus       552 ~~VVLTGGsSql~gI~elA~~iL~~-----~~VRiGrP~~~g~~gP~fAtAvGLll  602 (607)
T 1nbw_A          552 AFVVLVGGSSLDFEIPQLITEALSH-----YGVVAGQGNIRGTEGPRNAVATGLLL  602 (607)
T ss_dssp             CEEEEESGGGGSSSHHHHHHHHHHT-----TTCEEEECCGGGTSCSCCHHHHHHHH
T ss_pred             CCEEEeCchhhcccHHHHHHHHhCc-----CCeEEecCCccccCCchHHHHHHHHH
Confidence            5699999999999999999999965     2333333     34678877776543

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=91.11  E-value=0.23  Score=34.78  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          26 IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        26 Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      |+|.||.+..+.|-+++.+.+......  .+.|..+.....+.-.||+.++.
T Consensus       241 IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~lg~~a~~~GAa~l~~  290 (297)
T 4htl_A          241 IFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATHKNQAGLLGAVYHFL  290 (297)
T ss_dssp             EEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSCTTTHHHHHHHHHHH
T ss_pred             EEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCcCChHHHHhHHHHHH
Confidence            899999998888999999999866543  34555555455677788887653

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=90.59  E-value=0.11  Score=40.46  Aligned_cols=46  Identities=15%  Similarity=0.112  Sum_probs=34.0

Q ss_pred             cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC-----CCCcccceehhhh
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP-----SNPMTYAWEGGKL   74 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~-----~~~~~~aW~G~s~   74 (105)
                      ..|+||||+|+++|+.+-..+.|..     +.|++-.|     ..|.|++-.|-..
T Consensus       550 ~~VVLTGGsSql~GI~ElA~~iL~~-----y~VRiGrP~~~gv~gP~fAtAvGLll  600 (610)
T 2d0o_A          550 PFVVLVGGSSLDFEVPQLVTDALAH-----YRLVAGRGNIRGSEGPRNAVATGLIL  600 (610)
T ss_dssp             CEEEEESGGGGCSSHHHHHHHHTTT-----SSCEEEECCGGGTSTTSCHHHHHHHH
T ss_pred             CCEEEeCchhhcccHHHHHHHHhCc-----CCeEEecCCccccCCCcHHHHHHHHH
Confidence            5699999999999999999988854     23444333     4677877776543

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=90.36  E-value=0.14  Score=35.45  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=35.1

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+..+-|.+++.+.+.+..+. ..+.|..+.....++-.||+.++
T Consensus       236 ~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~~~~i~~~~~~~~a~~~GAa~l~  286 (289)
T 2aa4_A          236 CVVVGGSVGLAEGYLALVETYLAQEPAA-FHVDLLAAHYRHDAGLLGAALLA  286 (289)
T ss_dssp             EEEEEHHHHTSTTHHHHHHHHHTTSCGG-GCCEEEECSCSSCHHHHHHHHHH
T ss_pred             EEEEeCcccccHHHHHHHHHHHHHhcCc-cCCEEEECCCCCchHHHHHHHHH
Confidence            4888898886788889999888875322 24555554444556677887765

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=90.12  E-value=0.35  Score=34.35  Aligned_cols=52  Identities=12%  Similarity=0.163  Sum_probs=36.2

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCC-CceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPD-EFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~-~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+..+-|-+++.+.+.+.... ...++|..+.-...+.-+||+.++
T Consensus       272 ~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~  324 (327)
T 4db3_A          272 VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN  324 (327)
T ss_dssp             EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred             EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence            3888898888877888888888776532 234566655545566677887665

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=89.39  E-value=0.24  Score=34.78  Aligned_cols=53  Identities=21%  Similarity=0.240  Sum_probs=35.4

Q ss_pred             CeEEecCCCC-CccHHHHHHHHHhhhCCCCc--eeEEeCCCCCcccceehhhhhcc
Q psy8375          25 NIVITGGCCG-FAGIRDRVESDVRTLAPDEF--DVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        25 nIvl~GG~s~-~~g~~~Rl~~el~~~~p~~~--~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|+|.||.+. .+-|.+++.+.+.+..+...  .+.|..+.....+.-.||+.++.
T Consensus       265 ~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~  320 (326)
T 2qm1_A          265 SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLAL  320 (326)
T ss_dssp             EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGG
T ss_pred             EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHH
Confidence            4888888875 56788888888887654211  34555544445567789887653

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=89.30  E-value=0.14  Score=35.54  Aligned_cols=52  Identities=10%  Similarity=-0.018  Sum_probs=33.4

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCC----ceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDE----FDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~----~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+..+-|.+++.+.+.+..+..    ..+.|..+.....+.-.||+.++
T Consensus       230 ~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~  285 (292)
T 2gup_A          230 VISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNW  285 (292)
T ss_dssp             EEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHH
T ss_pred             EEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHH
Confidence            48888888766778888888887653211    23445444433455677888765

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=88.72  E-value=0.45  Score=34.47  Aligned_cols=52  Identities=15%  Similarity=0.135  Sum_probs=34.4

Q ss_pred             CeEEecCCCCC-ccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGF-AGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~-~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+.. +-|.+++.+.+.+..+....+.|........+.-.||+.++
T Consensus       317 ~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~  369 (380)
T 2hoe_A          317 KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHA  369 (380)
T ss_dssp             EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHH
T ss_pred             EEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHH
Confidence            48888888754 66778888888776543234555554444455677888765

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=87.60  E-value=0.4  Score=33.68  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=35.3

Q ss_pred             CeEEecCCC-CC-ccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCC-GF-AGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s-~~-~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+ .. +-|.+++.+++.+..+......|..+.-...++-.||+.++
T Consensus       240 ~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~  293 (302)
T 3vov_A          240 VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTA  293 (302)
T ss_dssp             EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHH
T ss_pred             EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHH
Confidence            478888877 55 55889999999887654333345555444556777888765

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=87.59  E-value=0.34  Score=34.28  Aligned_cols=52  Identities=15%  Similarity=0.120  Sum_probs=35.9

Q ss_pred             CeEEecCCCCC-ccHHHHHHHHHhhhCCCC--ceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGF-AGIRDRVESDVRTLAPDE--FDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~-~g~~~Rl~~el~~~~p~~--~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+.. +-|.+++.+.+.+.....  ..++|..+.....+.-+||+.++
T Consensus       263 ~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~  317 (321)
T 3r8e_A          263 NILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI  317 (321)
T ss_dssp             EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred             EEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence            38888888865 567888888888776421  13566666555667778888765

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=86.74  E-value=0.69  Score=32.66  Aligned_cols=53  Identities=11%  Similarity=0.092  Sum_probs=35.8

Q ss_pred             CeEEecCCCCC-ccHHHHHHHHHhhhCC-C--CceeEEeCCCCCcccceehhhhhcc
Q psy8375          25 NIVITGGCCGF-AGIRDRVESDVRTLAP-D--EFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        25 nIvl~GG~s~~-~g~~~Rl~~el~~~~p-~--~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|+|.||.+.. +-|.+++.+.+.+..+ .  ...++|........+.-.||+.++.
T Consensus       255 ~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l~~  311 (321)
T 3vgl_A          255 AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLAR  311 (321)
T ss_dssp             EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHHHH
T ss_pred             EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHHHH
Confidence            38888888765 4467888888887664 2  1245666665556677788887654

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=83.66  E-value=1.4  Score=32.09  Aligned_cols=50  Identities=22%  Similarity=0.068  Sum_probs=34.7

Q ss_pred             CeEEecCCCCCcc-HHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375          25 NIVITGGCCGFAG-IRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus        25 nIvl~GG~s~~~g-~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      -|+|+||.+...- |.+++.+.+....    ++.|........+.-.|++.++..
T Consensus       298 ~IvlgGgi~~~~~~l~~~i~~~l~~~~----~~~i~~~~~~~~a~~~GAa~l~~~  348 (381)
T 1saz_A          298 FIVLTGGLAHEKEFLVPWITKRVSFIA----PVLVFPGSNEEKALALSALRVLRG  348 (381)
T ss_dssp             EEEEEEGGGGCTTTHHHHHHHHHTTTS----CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred             EEEEeCcCccChHHHHHHHHHHHHhhc----CeEEEecCcchhHHHHHHHHHHcC
Confidence            5999999887655 8888988887765    355554444344667788776543

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=80.77  E-value=0.56  Score=33.06  Aligned_cols=52  Identities=13%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCC-CceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPD-EFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~-~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|+|.||.+..+.+-..+.+++++.... ...+.|..+.....++-.||+.++
T Consensus       272 ~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~i~~s~~~~~a~~~GAa~la  324 (327)
T 2ap1_A          272 LLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLH  324 (327)
T ss_dssp             EEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHTT
T ss_pred             EEEEeChhhcchhHHHHHHHHHHHhhccccCCCEEEEcCCCCcHHHHHHHHHH
Confidence            4888888776544444455555554331 224555554434456677887765

>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*

Probab=80.28  E-value=0.79  Score=33.84  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             cCeEEecCCCCCccHHHHHHHHH
Q psy8375          24 ENIVITGGCCGFAGIRDRVESDV   46 (105)
Q Consensus        24 ~nIvl~GG~s~~~g~~~Rl~~el   46 (105)
                      ..|++|||++.=|-|.+||++.|
T Consensus       285 ~~v~vcGGGa~N~~Lm~~L~~~l  307 (371)
T 3qbx_A          285 EEVLVCGGGAFNTALMKRLAMLM  307 (371)
T ss_dssp             CEEEEESGGGGCHHHHHHHHHHC
T ss_pred             ceEEEECCccCcHHHHHHHHHhC
Confidence            46999999999999999988766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	3e-24
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	1e-23
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	1e-12

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (221), Expect = 3e-24
 Identities = 28/95 (29%), Positives = 49/95 (51%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
            G+ E   + I  C ++ +  LY N V++GG   + GI DR++ ++  LAP    + ++ 
Sbjct: 126 AGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 185

Query: 61  PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
           P       W GG +++    F    +TK+EY+E G
Sbjct: 186 PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAG 220

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.7 bits (219), Expect = 1e-23
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR------------- 47
             +SE + +VI++CP++ +  LY+NIV++GG   F     R++ D++             
Sbjct: 134 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL 193

Query: 48  ---TLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
               L P   DV V+         W GG +++  PEFY    TK++YEE G ++C   
Sbjct: 194 SGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHN 251

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.6 bits (141), Expect = 1e-12
 Identities = 13/52 (25%), Positives = 33/52 (63%)

Query: 1   MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPD 52
           +GV+E + + I++  ++ +   Y++IV++GG   + G+  R+E +++ L  +
Sbjct: 123 VGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLE 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	100.0
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	99.72
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	98.73
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	98.05
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	97.99
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	97.43
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	96.78
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.29
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	94.45
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	93.43
d2hoea2	169	N-acetylglucosamine kinase {Thermotoga maritima [T	92.24
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	91.96
d1xc3a2	176	Putative fructokinase YhdR {Bacillus subtilis [Tax	91.42
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	89.06
d2ap1a1	186	Putative regulator protein YcfX {Salmonella typhim	87.0
d2gupa2	175	Hypothetical protein SP2142 {Streptococcus pneumon	84.99
d2ch5a1	227	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	83.0
d1z05a2	197	Transcriptional regulator VC2007 {Vibrio cholerae	80.31

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-37  Score=213.54  Aligned_cols=100  Identities=28%  Similarity=0.621  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE   80 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~   80 (105)
                      +||+++|.+||.+||.|+|+.|++||+|+||+|++|||.+||++||..+.|...+++|..+++|++++|+|||++|++++
T Consensus       126 ~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~  205 (225)
T d2fxua2         126 AGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST  205 (225)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGG
T ss_pred             CChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCcc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeHHHHHhhChhHHh
Q psy8375          81 FYSFVVTKEEYEEEGLALCY  100 (105)
Q Consensus        81 ~~~~~itk~ey~e~G~~~~~  100 (105)
                      |+++||||+||+|+|++++|
T Consensus       206 f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         206 FQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             GGGGSEEHHHHHHHCGGGGC
T ss_pred             HhhEEEEHHHHHhhCccccC
Confidence            99999999999999999986

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-37  Score=216.51  Aligned_cols=104  Identities=33%  Similarity=0.652  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhC----------------CCCceeEEeCCCCC
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLA----------------PDEFDVNVVLPSNP   64 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~----------------p~~~~v~v~~~~~~   64 (105)
                      .||+++|.+||++||+|.|+.|++||+|+||+|++|||.+||++||+.++                |..++++|.++++|
T Consensus       134 ~~l~~~i~~si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r  213 (258)
T d1k8ka2         134 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQ  213 (258)
T ss_dssp             CCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTC
T ss_pred             ccchHHHHHHHHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCC
Confidence            47999999999999999999999999999999999999999999998753                34456889999999


Q ss_pred             cccceehhhhhcccccccccceeHHHHHhhChhHH-hhhcC
Q psy8375          65 MTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALC-YERFD  104 (105)
Q Consensus        65 ~~~aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~-~~k~~  104 (105)
                      ++++|+|||++|++++|+++||||+||+|+|++++ |||||
T Consensus       214 ~~s~W~Ggsila~l~~f~~~~Itk~eY~E~G~~iv~~rk~f  254 (258)
T d1k8ka2         214 RYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF  254 (258)
T ss_dssp             TTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCC
T ss_pred             CceehHHHHHHHcCccHHhheecHHHHhhhChHHHhcCCCc
Confidence            99999999999999999999999999999999999 57787

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=1.2e-18  Score=116.71  Aligned_cols=52  Identities=25%  Similarity=0.650  Sum_probs=50.1

Q ss_pred             CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCC
Q psy8375           1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPD   52 (105)
Q Consensus         1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~   52 (105)
                      +||+++|.+||.+||.|+|+.|++||+||||+|++|||.+||++||++++|.
T Consensus       123 ~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL~~l~p~  174 (190)
T d1k8kb1         123 VGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLE  174 (190)
T ss_dssp             CCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCHHHHHHHHHHHhhhH
Confidence            4899999999999999999999999999999999999999999999999874

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=5e-09  Score=67.95  Aligned_cols=67  Identities=18%  Similarity=0.355  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHcCCcchHHHh-hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           3 VSECIVDVIRSCPMEAQPHL-YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l-~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.+.|.+++..+......+. ...|+||||+|.+|++.+++++.+        ...+....+|..++..||++++.
T Consensus       117 ~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~f--------g~~v~~~~~P~~aVA~GAai~~~  184 (196)
T d1jcea2         117 IVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET--------GISVIRSEEPLTAVAKGAGMVLD  184 (196)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH--------SSCEEECSSTTTHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHH--------CcCCccCCChHHHHHHHHHHHHH
Confidence            34567778887777665544 456999999999999999999988        33455567899999999998764

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=3.3e-06  Score=55.15  Aligned_cols=29  Identities=17%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             HHHhhcCeEEecCCCCCccHHHHHHHHHh
Q psy8375          19 QPHLYENIVITGGCCGFAGIRDRVESDVR   47 (105)
Q Consensus        19 r~~l~~nIvl~GG~s~~~g~~~Rl~~el~   47 (105)
                      ...+..+|+||||+|++|||.+.+++.|.
T Consensus       126 ~~~~~~~IvLtGGgs~l~gl~~~l~~~l~  154 (191)
T d1e4ft2         126 EIGIPGGVVLTGGGAKIPRINELATEVFK  154 (191)
T ss_dssp             --CGGGCEEEESGGGGSTTHHHHHHHHHC
T ss_pred             ccccCceEEEecchhhhhhHHHHHHHHHC
Confidence            34456679999999999999999999885

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=97.99  E-value=1.9e-06  Score=56.62  Aligned_cols=66  Identities=11%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375           3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD   78 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l   78 (105)
                      +.++|.+++.+...+.. + ...|+|+||+|.+|.+.++|++.+.        .++....+|..++-.||++.|..
T Consensus       131 ~~~~i~~~l~~a~~~~~-~-Id~v~lvGG~sr~p~l~~~i~~~f~--------~~~~~~~~p~~aVa~GAa~~aa~  196 (198)
T d1dkgd2         131 SIELLKVALQDAGLSVS-D-IDDVILVGGQTRMPMVQKKVAEFFG--------KEPRKDVNPDEAVAIGAAVQGGV  196 (198)
T ss_dssp             HHHHHHHHHHTTTCCTT-T-CCEEEEESGGGGSHHHHHHHHHHHS--------SCCBCSSCTTTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCChh-H-CcEEEEEcCccCCHHHHHHHHHHHC--------CCCCCCCChHHHHHHHHHHHHHh
Confidence            45677777777655432 2 4669999999999999999998873        22344457788899999998764

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.43  E-value=1.6e-05  Score=51.54  Aligned_cols=64  Identities=14%  Similarity=0.219  Sum_probs=43.0

Q ss_pred             HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375           5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus         5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|.+++.+....  ..=...|+|+||+|.+|.+.+.+++.+..       ..+..+.+|..++-.||+++|.
T Consensus       127 ~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~i~~~f~~-------~~i~~~~~p~~aVa~GaA~~aa  190 (193)
T d1bupa2         127 DPVEKALRDAKLD--KSQIHDIVLVGGSTRIPKIQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA  190 (193)
T ss_dssp             HHHHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTTT-------CCCBCSSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcCC-------CCCCCCCChHHHHHHHHHHHHH
Confidence            4445555443222  11135699999999999999888766521       2244455788899999998875

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00026  Score=43.84  Aligned_cols=48  Identities=17%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.+|+|+||+|.+      ++..|+...+.. +.++..+++|+++.-.|..++++
T Consensus       116 ~~~iil~GGGs~l------l~~~lk~~~~~~-~~~v~i~~~P~~A~a~G~~~~g~  163 (163)
T d2zgya2         116 YTHVMVIGGGAEL------ICDAVKKHTQIR-DERFFKTNNSQYDLVNGMYLIGN  163 (163)
T ss_dssp             CCEEEEESTTHHH------HHHHHHHTSCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred             cceEEEECchHHH------HHHHHHHHhCCC-CCCeEECCCcHhHHHHHHHHhcC
Confidence            4569999999843      455566655532 33567788999999999877763

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.29  E-value=0.00067  Score=44.26  Aligned_cols=45  Identities=22%  Similarity=0.346  Sum_probs=37.7

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|++.||.+..++|.+++++.|        +.++..|+.+..+.-+||+++|.
T Consensus       210 ~Iv~gGGv~~~~~~~~~l~~~l--------~~~i~~~~~~~~agaiGAA~lA~  254 (259)
T d1huxa_         210 DVVMTGGVAQNYGVRGALEEGL--------GVEIKTSPLAQYNGALGAALYAY  254 (259)
T ss_dssp             SEEEESGGGGCHHHHHHHHHHH--------CSCEECCGGGGGHHHHHHHHHHH
T ss_pred             cEEEEccccccHHHHHHHHHHH--------CCCEEcCCCccHHHHHHHHHHHH
Confidence            4999999999999999999888        45577777777777799998875

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.45  E-value=0.029  Score=35.94  Aligned_cols=49  Identities=22%  Similarity=0.095  Sum_probs=37.3

Q ss_pred             cCeEEecCC-CCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          24 ENIVITGGC-CGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        24 ~nIvl~GG~-s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      +.|++.||. +..|.|.+++++.++..     .+++..++++.++.-+||+.|++
T Consensus       218 ~~Iv~~GG~~~~~~~l~~~i~~~~~~~-----~~~i~~~~~~~~aGaiGA~~L~~  267 (267)
T d2ewsa1         218 ENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLEK  267 (267)
T ss_dssp             CEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTCC
T ss_pred             CCEEEECChhhcCHHHHHHHHHHHHhC-----CCEEEECCCccHHHHHHHHHhcC
Confidence            468888885 66899999999888652     35666677888888888887763

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.018  Score=37.66  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHcC-CcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhh
Q psy8375           3 VSECIVDVIRSC-PMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKL   74 (105)
Q Consensus         3 i~~~I~~si~~~-~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~   74 (105)
                      +.++|.+.|... -.-.+..=.++|+++||.+.-..+.+++.+........ ..+++..+.+..++.-+||.+
T Consensus       137 ~q~~v~~~l~~~a~~aa~~~~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~-~~i~~~Fp~~~~y~galGA~l  208 (212)
T d2i7na2         137 TLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSK-GQLKALFLEHEGYFGAVGALL  208 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTT-TSCCEEEETTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEECcHhhCHHHHHHHHHHHHHHHhh-CCceEEecCChhhhHHHHHHH
Confidence            455666666443 22334455678999999999999999998876544322 256777777788887777643

>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.24  E-value=0.072  Score=32.58  Aligned_cols=52  Identities=17%  Similarity=0.109  Sum_probs=35.5

Q ss_pred             eEEecCCCC-CccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          26 IVITGGCCG-FAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        26 Ivl~GG~s~-~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      |+|.|+.+. .+-|.+++.+.++........++|..+.....+.-.||+.++-
T Consensus       107 IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~~  159 (169)
T d2hoea2         107 IVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL  159 (169)
T ss_dssp             EEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred             EEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCHHHHHHHHHHH
Confidence            778887774 4567888888888766544445566555555667788887763

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.96  E-value=0.01  Score=36.33  Aligned_cols=48  Identities=13%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             HhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375          21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        21 ~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      +-..+|+|+||+|.+      +...++...+..  ..+..+++|+++.-+|-..+|
T Consensus       111 ~~i~~iil~GGga~l------l~~~l~~~~~~~--~~~~~~~~p~~ana~G~~~~~  158 (161)
T d2fsja1         111 DRVTSLIPVGGGSNL------IGDRFEEIAPGT--LVKIKPEDLQFANALGYRDAA  158 (161)
T ss_dssp             GGEEEEEEESTTHHH------HGGGGGGGSTTC--BCCCCTTTTTTHHHHHHHHHH
T ss_pred             ccccEEEEECCHHHH------HHHHHHHHccCC--eeecCCCCccchHHHHHHHHH
Confidence            345789999999975      334444455532  223456789998888866554

>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=91.42  E-value=0.13  Score=31.56  Aligned_cols=53  Identities=13%  Similarity=0.123  Sum_probs=35.2

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCC---------ceeEEeCCCCCcccceehhhhhcc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDE---------FDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~---------~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|+|.||-+..+.|-+++.+++.+..+..         ..++|..+.-...+.-+||+.++.
T Consensus       106 ~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~la~  167 (176)
T d1xc3a2         106 KIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAH  167 (176)
T ss_dssp             CEEEESGGGGSTHHHHHHHHHHHHHHTTSSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHH
T ss_pred             EEEEcChhhccHhHHHHHHHHHHHHHHHhhccccccccCCCeEEeCCCCCcHHHHHHHHHHH
Confidence            48888888887777777777777654322         223455554445667788888764

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.067  Score=32.76  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|||.|+-+..+-|-+++++.+... +....++|........+.-+||+++|.
T Consensus       117 ~IvlgG~i~~~~~~~~~i~~~~~~~-~~~~~~~I~~s~l~~~a~~~GAA~lA~  168 (170)
T d2aa4a2         117 CVVVGGSVGLAEGYLALVETYLAQE-PAAFHVDLLAAHYRHDAGLLGAALLAQ  168 (170)
T ss_dssp             EEEEEHHHHTSTTHHHHHHHHHTTS-CGGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred             EEEEeChhhhhhhHHHHHHHHHHhc-cCCCCCeEEecCCCCcHHHHHHHHHHC
Confidence            4888888788888888888877654 223345666665555677789998874

>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.00  E-value=0.063  Score=33.13  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=34.3

Q ss_pred             eEEecCCCCCccHHHHHHHHHhhhC-CCCceeEEeCCCCCcccceehhhhhc
Q psy8375          26 IVITGGCCGFAGIRDRVESDVRTLA-PDEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        26 Ivl~GG~s~~~g~~~Rl~~el~~~~-p~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      |||.||.+..+-|-+++.+.+++.. |....++|..+.-...+.-+||+.++
T Consensus       132 IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s~lg~~a~~~GAA~la  183 (186)
T d2ap1a1         132 LVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLH  183 (186)
T ss_dssp             EEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHTT
T ss_pred             EEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEECCCCChHHHHHHHHHh
Confidence            7888888777777777777776543 33335666655545567778988776

>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.99  E-value=0.4  Score=29.10  Aligned_cols=52  Identities=10%  Similarity=-0.018  Sum_probs=32.2

Q ss_pred             CeEEecCCCCCccHHHHHHHHHhhhCC----CCceeEEeCCCCCcccceehhhhhc
Q psy8375          25 NIVITGGCCGFAGIRDRVESDVRTLAP----DEFDVNVVLPSNPMTYAWEGGKLMS   76 (105)
Q Consensus        25 nIvl~GG~s~~~g~~~Rl~~el~~~~p----~~~~v~v~~~~~~~~~aW~G~s~~a   76 (105)
                      .|||.||-+..+.|-+.+.+.+.+..+    ....+.|..+.....+.-+||+.+.
T Consensus       113 ~IvlGG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~s~~~~~a~l~GAa~l~  168 (175)
T d2gupa2         113 VISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNW  168 (175)
T ss_dssp             EEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHH
T ss_pred             eEEECCcccchHHHHHHHHHHHHHHHhhccccCCCCEEEECCCCCcHHHHHHHHHH
Confidence            378888877777787877777765432    1223345544444456677887654

>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.052  Score=35.32  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHcCCcchHHH-hhcCeEEecCCCCC-ccHHHHHHHHHhhhCCC-----CceeEEeCCCCCcccceehhhhh
Q psy8375           3 VSECIVDVIRSCPMEAQPH-LYENIVITGGCCGF-AGIRDRVESDVRTLAPD-----EFDVNVVLPSNPMTYAWEGGKLM   75 (105)
Q Consensus         3 i~~~I~~si~~~~~d~r~~-l~~nIvl~GG~s~~-~g~~~Rl~~el~~~~p~-----~~~v~v~~~~~~~~~aW~G~s~~   75 (105)
                      |.+.|...+..++++.... ---+|+|+||...- +-|.+.+.+.|.+....     ...+++..+   ...+..||.++
T Consensus       125 La~~i~~~~~~l~~~~~~~~~~~~Vvl~Ggv~~~~~~l~~~~~~~L~~~~~~~~~~~~~~~~~~~~---~~~p~~GAa~L  201 (227)
T d2ch5a1         125 LGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKL---RHSSALGGASL  201 (227)
T ss_dssp             HHHHHHHHGGGSCGGGGCSTTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEE---SSCTHHHHHHH
T ss_pred             HHHHHHHHHHhcCchhhccccCCCeEEechHhhcchHHHHHHHHHHHHhcchhhcccCCeeEeecC---CCccHHHHHHH
Confidence            3455556666666654211 11138999988653 23556666666554321     113444433   44678899998


Q ss_pred             cccccccccceeHHHHHhhChhHHhhhc
Q psy8375          76 SLDPEFYSFVVTKEEYEEEGLALCYERF  103 (105)
Q Consensus        76 a~l~~~~~~~itk~ey~e~G~~~~~~k~  103 (105)
                      |....-..   ...||+++.....+.||
T Consensus       202 A~~~~g~~---~~~d~~~~~~~~~~~~~  226 (227)
T d2ch5a1         202 GARHIGHL---LPMDYSANAIAFYSYTF  226 (227)
T ss_dssp             HHHTTTCC---CCCCHHHHEEEEEEEEC
T ss_pred             HHHHcCCC---CCCChHHHHHHHHcCCC
Confidence            86321111   13466666555444443

>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=80.31  E-value=0.55  Score=29.03  Aligned_cols=53  Identities=17%  Similarity=0.113  Sum_probs=31.5

Q ss_pred             CeEEecCCCCC-ccHHHHHHHHHhhhCCCC--ceeEEeCCCCCcccceehhhhhcc
Q psy8375          25 NIVITGGCCGF-AGIRDRVESDVRTLAPDE--FDVNVVLPSNPMTYAWEGGKLMSL   77 (105)
Q Consensus        25 nIvl~GG~s~~-~g~~~Rl~~el~~~~p~~--~~v~v~~~~~~~~~aW~G~s~~a~   77 (105)
                      .|+|.||.+.. +-|.+++.+.+++.....  ..++|..+.-...+.=.||++++.
T Consensus       128 ~IviGG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~I~~s~lg~~a~~~GAA~l~~  183 (197)
T d1z05a2         128 KILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQATMPGAALIKQ  183 (197)
T ss_dssp             EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSCTTHHHHHHHHH
T ss_pred             EEEEecchHHhhHHHHHHHHHHHHHhcccccCCCCEEEECCCCCcHHHHHHHHHHH
Confidence            36776665643 446777888887654211  135555554444556678887763