Psyllid ID: psy8421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSNLDLLF
Secondary Structure (PSIPRED)
ccccHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccEEEcccccccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
miaaykgaghLSVIKTLVHagadvnhstktqstplraacYDGRLDIVKYLIEHgadlnitnhynnSCLMIAAYKGAGHLSVIKTLVHagadvnhstktqstplraacYDGRLDIVKYLIEHgadlnitnhynnSCLMIAAYKGAGHLSVIKTLVHagadvnhstktqstplraacYDGRLDIVKYLIEHgadlnitnhynnSCLMIAAYKgidvgrvgpglfdrypsavtsnldllf
Flexible Loop (DISEMBL)
miaaykgaghLSVIKTLVHAGADVnhstktqstplraaCYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVnhstktqstplraaCYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVnhstktqstplraaCYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFdrypsavtsnldllf
Low Complexity Region (SEG)
MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSNLDLLF
Disordered region (IsUnstruct)
****YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVT*******
Disordered Region (DISOPRED)
MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSNLDLLF
Disordered Region (DISEMBL)
MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSNLDLLF
Disordered Region (DISPRO)
MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPS**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSNLDLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
A1ZBY1	650	Protein fem-1 homolog B O	yes	N/A	0.776	0.283	0.417	2e-32
Q9Z2G0	627	Protein fem-1 homolog B O	yes	N/A	0.729	0.275	0.423	1e-30
P0C6P7	627	Protein fem-1 homolog B O	yes	N/A	0.729	0.275	0.423	1e-30
Q9UK73	627	Protein fem-1 homolog B O	yes	N/A	0.729	0.275	0.423	2e-30
Q9VCA8	4001	Ankyrin repeat and KH dom	no	N/A	0.843	0.049	0.385	3e-30
P17221	656	Sex-determining protein f	yes	N/A	0.848	0.306	0.390	5e-30
Q5ZM55	627	Protein fem-1 homolog B O	yes	N/A	0.700	0.264	0.422	9e-30
Q9VFD5	664	Protein fem-1 homolog CG6	no	N/A	0.746	0.266	0.379	2e-29
Q8CEF1	617	Protein fem-1 homolog C O	no	N/A	0.767	0.294	0.398	4e-29
A7MB89	617	Protein fem-1 homolog C O	no	N/A	0.767	0.294	0.398	4e-29

>sp|A1ZBY1|FEM1B_DROME Protein fem-1 homolog B OS=Drosophila melanogaster GN=Fem-1 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 116/199 (58%), Gaps = 15/199 (7%)

Query: 5   YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH-- 62
           ++GA     +   +   A+ +       TPL  A   G +  VK L+ H  D+++     
Sbjct: 23  WRGANDTLPVTNYITYPANFDQPDGQSLTPLTMAAMMGNVKFVKTLLSH-YDVDLDRECN 81

Query: 63  --------YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI 114
                   Y  + L +AA  G GHL ++K LV AGA +NH+TK QS+PLRAACY+GRLDI
Sbjct: 82  VIYDGMVVYGATALWVAA--GMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDI 139

Query: 115 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 174
           V++LI++GAD+N TN +NN+ LMIAAYK  GH  V+KTL+  G+  N      +T L  A
Sbjct: 140 VEFLIDNGADVNATNLFNNNTLMIAAYK--GHHLVVKTLLQNGSRANDQALCGATALHYA 197

Query: 175 CYDGRLDIVKYLIEHGADL 193
              G LD+V  L++HGA L
Sbjct: 198 AESGHLDVVVALLDHGATL 216

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.
Drosophila melanogaster (taxid: 7227)

>sp|Q9Z2G0|FEM1B_MOUSE Protein fem-1 homolog B OS=Mus musculus GN=Fem1b PE=1 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 106/182 (58%), Gaps = 9/182 (4%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGA 76
           V+     +STPL  A  +G   +V+ L+EH          +    +  +    +    GA
Sbjct: 39  VSQQGGQRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGA 98

Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           GH  V+K LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CL
Sbjct: 99  GHFEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCL 158

Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
           MIAAYK  GH  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + 
Sbjct: 159 MIAAYK--GHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAIVVN 216

Query: 197 NH 198
            H
Sbjct: 217 GH 218

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet. Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Mus musculus (taxid: 10090)

>sp|P0C6P7|FEM1B_RAT Protein fem-1 homolog B OS=Rattus norvegicus GN=Fem1b PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 106/182 (58%), Gaps = 9/182 (4%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGA 76
           V+     +STPL  A  +G   +V+ L+EH          +    +  +    +    GA
Sbjct: 39  VSQQGGQRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGA 98

Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           GH  V+K LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CL
Sbjct: 99  GHFEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCL 158

Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
           MIAAYK  GH  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + 
Sbjct: 159 MIAAYK--GHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAIVVN 216

Query: 197 NH 198
            H
Sbjct: 217 GH 218

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet (By similarity). Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Rattus norvegicus (taxid: 10116)

>sp|Q9UK73|FEM1B_HUMAN Protein fem-1 homolog B OS=Homo sapiens GN=FEM1B PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 106/182 (58%), Gaps = 9/182 (4%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGA 76
           V+     +STPL  A  +G   +V+ L+EH          +    +  +    +    GA
Sbjct: 39  VSQQGGQRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGA 98

Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           GH  V+K LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CL
Sbjct: 99  GHFEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCL 158

Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
           MIAAYK  GH  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + 
Sbjct: 159 MIAAYK--GHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAIVVN 216

Query: 197 NH 198
            H
Sbjct: 217 GH 218

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet. Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Homo sapiens (taxid: 9606)

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score =  132 bits (331), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 120/205 (58%), Gaps = 5/205 (2%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AGHL ++K L++  ADVN    T +TPL  AC  G++D+VK L++HGA++   N   ++ 
Sbjct: 629 AGHLDIVKLLLNHNADVNAHCATGNTPLMFACAGGQVDVVKVLLKHGANVEEQNENGHTP 688

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
           LM AA   AGH+ V K L+  GA +N HS + + + L  ACY G LD+V++L++ GAD  
Sbjct: 689 LMEAA--SAGHVEVAKVLLEHGAGINTHSNEFKESALTLACYKGHLDMVRFLLQAGADQE 746

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
                 ++ LM A+    GH+ V + L+ +GA VN  T +  +PL  A   G +++   L
Sbjct: 747 HKTDEMHTALMEASMD--GHVEVARLLLDSGAQVNMPTDSFESPLTLAACGGHVELATLL 804

Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
           IE GA++   N    + LM AA +G
Sbjct: 805 IERGANIEEVNDEGYTPLMEAAREG 829

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|P17221|FEM1_CAEEL Sex-determining protein fem-1 OS=Caenorhabditis elegans GN=fem-1 PE=1 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 128/215 (59%), Gaps = 14/215 (6%)

Query: 23  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--HYNNSCLM----IAAYKGA 76
           D  +S +    PL  A  +G  ++V+YL+E GAD ++     ++N  +     + A   A
Sbjct: 40  DCFNSDQDGRYPLVIAARNGHANVVEYLLEIGADPSVRGVVEFDNENIQGTPPLWAASAA 99

Query: 77  GHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           GH+ ++K L+  A ADVN +T T+STPLR ACYDG LDIVKYL+E GAD +I N + ++C
Sbjct: 100 GHIEIVKLLIEKANADVNQATNTRSTPLRGACYDGHLDIVKYLLEKGADPHIPNRHGHTC 159

Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           LMIA+Y+    + +++ L+  G DVN  T+  +T L  A   G +++VK L++HG+ L +
Sbjct: 160 LMIASYRNK--VGIVEELLKTGIDVNKKTERGNTALHDAAESGNVEVVKILLKHGSVL-M 216

Query: 196 TNHYNNSCLMIAAYKG-IDVGRVGPGLFDRYPSAV 229
            +      LM AA  G +DV  V   L D+ PS +
Sbjct: 217 KDIQGVDPLMGAALSGFLDVLNV---LADQMPSGI 248

Sex-determining protein; essential for the adoption of the male sexual fate in all tissues. Substrate recognition subunit of the cullin-RING-based CBC(fem-1) (Cul2-ElonginB-ElonginC) E3 ubiquitin-protein ligase complex which mediates in association with cofactors fem-2 and fem-3 the ubiquitination and subsequent proteasomal degradation of tra-1.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5ZM55|FEM1B_CHICK Protein fem-1 homolog B OS=Gallus gallus GN=FEM1B PE=2 SV=1

 Score =  130 bits (327), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 103/175 (58%), Gaps = 9/175 (5%)

Query: 31  QSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
           +STPL  A  +G   +V+ L+EH          +       +    +    GAGH  V+K
Sbjct: 46  RSTPLIIAARNGHTKVVRLLLEHYRVQTQQTGTVRFDGFVIDGATALWCAAGAGHFEVVK 105

Query: 84  TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
            LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CLMIAAYK 
Sbjct: 106 LLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAYK- 164

Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 198
            GH  V++ L+   AD N      +T L  A   G L+IV+ L++  A + +  H
Sbjct: 165 -GHTDVVRYLLEQHADPNAKAHCGATALHFAAEAGHLEIVRELVKWKAAMMVNGH 218

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis.

Gallus gallus (taxid: 9031)

>sp|Q9VFD5|FEM1A_DROME Protein fem-1 homolog CG6966 OS=Drosophila melanogaster GN=CG6966 PE=2 SV=2

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 10/187 (5%)

Query: 32  STPLRAACYDGRLDIVKYL-------IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
           +TPL  +C +G  DIV+YL       +E    ++           +     AGHL ++K 
Sbjct: 42  ATPLVISCRNGHYDIVEYLLTKCRANVEQVGSVSFDGEPIEDAPPLWCAAAAGHLGIVKM 101

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
           LV  GA+VN +T+T STPLRAAC+DG  +IVKYL+ HGAD  + N + ++CLMIA YKG 
Sbjct: 102 LVRRGANVNSTTRTNSTPLRAACFDGHYEIVKYLVHHGADFEVANRHGHTCLMIACYKG- 160

Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
            H  + + L+   ADVN  +   +T L      G L I++ L++HGA +++ ++Y  + L
Sbjct: 161 -HFRIAQYLLSLNADVNRCSVKGNTALHDCAESGSLQILQLLLKHGATMDV-DYYGMTPL 218

Query: 205 MIAAYKG 211
           + A+  G
Sbjct: 219 LAASVTG 225

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q8CEF1|FEM1C_MOUSE Protein fem-1 homolog C OS=Mus musculus GN=Fem1c PE=2 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 11/193 (5%)

Query: 27  STKTQ-STPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGH 78
           S KT  +TPL  A   G LD+V++L+E        G  +N           + A   AGH
Sbjct: 36  SEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETIEGAPPLWAASAAGH 95

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
           L V+++L++ GA VN++T T STPLRAAC+DG L+IVKYL+EH ADL ++N + ++CLMI
Sbjct: 96  LKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKADLEVSNRHGHTCLMI 155

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 198
           + YK  GH  + + L+  GADVN  +   +T L      G LDI+K L+ + A +   + 
Sbjct: 156 SCYK--GHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLLMYCAKME-KDG 212

Query: 199 YNNSCLMIAAYKG 211
           Y  + L+ A+  G
Sbjct: 213 YGMTPLLSASVTG 225

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Mus musculus (taxid: 10090)

>sp|A7MB89|FEM1C_BOVIN Protein fem-1 homolog C OS=Bos taurus GN=FEM1C PE=2 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 11/193 (5%)

Query: 27  STKTQ-STPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGH 78
           S KT  +TPL  A   G LD+V++L+E        G  +N           + A   AGH
Sbjct: 36  SEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETIEGAPPLWAASAAGH 95

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
           L V+++L++ GA VN++T T STPLRAAC+DG L+IVKYL+EH ADL ++N + ++CLMI
Sbjct: 96  LKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKADLEVSNRHGHTCLMI 155

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 198
           + YK  GH  + + L+  GADVN  +   +T L      G LDI+K L+ + A +   + 
Sbjct: 156 SCYK--GHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLLMYCAKME-KDG 212

Query: 199 YNNSCLMIAAYKG 211
           Y  + L+ A+  G
Sbjct: 213 YGMTPLLSASVTG 225

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
115620446	373	PREDICTED: ankyrin repeat, PH and SEC7 d	0.856	0.544	0.435	2e-37
390343596	1573	PREDICTED: serine/threonine-protein phos	0.835	0.125	0.455	7e-37
390368652	2812	PREDICTED: uncharacterized protein LOC58	0.839	0.070	0.458	3e-35
390345400	1162	PREDICTED: ankyrin-1-like [Strongylocent	0.831	0.169	0.447	3e-35
390370026	1481	PREDICTED: ankyrin repeat and KH domain-	0.877	0.140	0.446	4e-35
390358417	1408	PREDICTED: serine/threonine-protein phos	0.839	0.141	0.453	4e-35
390343602	1895	PREDICTED: uncharacterized protein LOC59	0.839	0.105	0.453	6e-35
340382873	1528	PREDICTED: ankyrin repeat domain-contain	0.839	0.130	0.377	7e-35
390343598	1639	PREDICTED: serine/threonine-protein phos	0.839	0.121	0.450	8e-35
390339708	238	PREDICTED: ankyrin-3-like [Strongylocent	0.822	0.819	0.458	2e-34

>gi|115620446|ref|XP_001200905.1| PREDICTED: ankyrin repeat, PH and SEC7 domain containing protein secG-like [Strongylocentrotus purpuratus]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 132/209 (63%), Gaps = 6/209 (2%)

Query: 3   AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 62
           A Y+G     V++ L+  GAD +     ++TPL  A  +G LD+V+ LIE GADLN+ ++
Sbjct: 155 ATYRGDP--DVVRVLIEHGADPDTVDYDRNTPLHTASNNGHLDVVETLIEGGADLNMVDY 212

Query: 63  YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 122
           Y N+ L  A + G  HL V+  L++  AD N +    STPL  A Y G LD+V  LI+HG
Sbjct: 213 YGNTPLHTALFNG--HLDVVYILINHDADPNTTHDDGSTPLHMASYRGHLDVVGALIDHG 270

Query: 123 ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI 182
           ADLN+ ++  N+ L  A +  +GHL V++TL+  GAD+N + K  STPL  A Y+G  D+
Sbjct: 271 ADLNMVDNDRNTPLHAALH--SGHLDVVETLIKEGADLNMTDKDLSTPLHTASYNGHHDV 328

Query: 183 VKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           V+ LIE GADLN+ ++Y+N+ L  A+Y G
Sbjct: 329 VETLIEEGADLNMVDYYDNTPLHAASYNG 357

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390343596|ref|XP_783930.3| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Strongylocentrotus purpuratus]

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 128/202 (63%), Gaps = 4/202 (1%)

Query: 10   HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
            HL V++ LV+AGADV  +T+   TPLRAA Y+G  DIVKYLI  GA+ N  ++   + L 
Sbjct: 1008 HLHVVECLVNAGADVKKATEQGRTPLRAASYNGHTDIVKYLISQGANPNSVDNDGYTPLY 1067

Query: 70   IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
              + +  GHL V++ LV+AGADV  +T+   TPLR A Y+G  DIVKYLI  GA+ N  +
Sbjct: 1068 FPSQE--GHLDVVECLVNAGADVKKATEQGWTPLRTASYNGHADIVKYLISQGANPNSVD 1125

Query: 130  HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
            +   + L IA+    GHL  ++ LV+AGADV  +T+   TP+  A  DG +DIVKYLI  
Sbjct: 1126 NDGYTSLYIASKN--GHLHSVECLVNAGADVKKATEKGWTPIHGASIDGHVDIVKYLISQ 1183

Query: 190  GADLNITNHYNNSCLMIAAYKG 211
            GA+ N+ ++  N+ L  A+  G
Sbjct: 1184 GANPNLVDNDGNTSLYFASVNG 1205

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390368652|ref|XP_788092.3| PREDICTED: uncharacterized protein LOC583072, partial [Strongylocentrotus purpuratus]

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 9    GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
            GHL V++ LV AGADVN +T    TPLRAA   G +DIVKYLI   A+ N  N+  ++ +
Sbjct: 2251 GHLDVVECLVKAGADVNKATDEGLTPLRAASSLGHVDIVKYLISQEANPNSVNNNGSTPM 2310

Query: 69   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
             IA+ +  GHL V+K LV+AGAD N + K  +TPL  A   G +DIV YLI  GA+ N  
Sbjct: 2311 CIASQE--GHLQVVKCLVNAGADANKAAKNGTTPLYVASGKGHVDIVTYLICQGANPNSV 2368

Query: 129  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
             +   + L +A+ +  G L V++ LV AGADVN +T    TPLRAA   G +DIVKYLI 
Sbjct: 2369 KNNGQTPLYLASIE--GQLQVVECLVKAGADVNKATDEGLTPLRAASSLGHVDIVKYLIS 2426

Query: 189  HGADLNITNHYNNSCLMIAAYKG 211
              A+ N  N+  ++ + IA+ +G
Sbjct: 2427 QEANPNSVNNNGSTPMCIASQEG 2449

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390345400|ref|XP_001191465.2| PREDICTED: ankyrin-1-like [Strongylocentrotus purpuratus]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 135/217 (62%), Gaps = 20/217 (9%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AGHL+V++ L++AGADVN++ K  +TPL AA   G +D+VK LI  GA+L++ ++   + 
Sbjct: 788 AGHLNVVECLMNAGADVNYAAKNGTTPLYAASSKGEVDVVKSLISKGANLDLVDNDGETP 847

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L IA+ KG  HL V++ LV+AGA VN + K   TPL AA   G +D+VK LI  GA+ N 
Sbjct: 848 LYIASCKG--HLDVVECLVNAGAGVNKAAKNGMTPLYAASSKGEVDVVKCLISKGANPNS 905

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK----------TQSTPLRAACYD 177
             +   + L IA+ KG  HL+V++ L++AGAD+N + K          T  TPL AA   
Sbjct: 906 VGNDGETPLYIASRKG--HLNVVECLLNAGADINKAAKNGADVDKAAKTGMTPLYAASSK 963

Query: 178 GRLDIVKYLIEHGADLNITNHYNNSC---LMIAAYKG 211
           G +D+VK LI  GADLN+   Y+N C   L IA  KG
Sbjct: 964 GAVDVVKCLISEGADLNL---YDNECKTPLYIACQKG 997

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390370026|ref|XP_001186856.2| PREDICTED: ankyrin repeat and KH domain-containing protein 1-like, partial [Strongylocentrotus purpuratus]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 136/213 (63%), Gaps = 5/213 (2%)

Query: 1    MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNI 59
            + AA +G GHL V++ LV  GADVN +   +  TPL AA   G L+IV+YL+  GAD+N 
Sbjct: 806  LYAASQG-GHLQVVECLVDKGADVNKAAGYKGDTPLYAASQGGYLEIVEYLVNKGADVNK 864

Query: 60   TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYL 118
             + Y     + AA +G G+L V++ LV+ GADVN ++     TPL AA   G L++V+YL
Sbjct: 865  ASSYKGGTPLYAASQG-GYLEVVEYLVNKGADVNKASAYGGYTPLYAASQGGYLEVVEYL 923

Query: 119  IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 178
            +  GAD+N  + Y+ +  +  A +  GHLSV++ LV+AGADVN +TK +STPL  A ++G
Sbjct: 924  VNKGADVNKASGYDGATPLNIASQN-GHLSVVECLVNAGADVNKATKYRSTPLNGASHEG 982

Query: 179  RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             LD VKYLI  GAD++  N+   + L +AA  G
Sbjct: 983  HLDTVKYLINKGADIDSRNYNGQTPLRVAASYG 1015

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390358417|ref|XP_797753.3| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Strongylocentrotus purpuratus]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 123/203 (60%), Gaps = 4/203 (1%)

Query: 9    GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
            G+L +++ +VHAGA+VN + K   TPL  A + G LDIV+YL+  GA+ N  +    + L
Sbjct: 806  GYLDIVECIVHAGANVNIAAKNGYTPLYEASHKGHLDIVQYLVSQGANTNSVDDEGYTPL 865

Query: 69   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
             +A  +  GHL   K LVHAGADVN   K   TPL  A + G LDIV+YLI   A+LN  
Sbjct: 866  YVACQE--GHLDAAKYLVHAGADVNKEAKNGDTPLYRASHKGHLDIVEYLISQRANLNSV 923

Query: 129  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
            +    + L +A+ +  GHL V K LV+AGADVN + K  STPL AA Y G LDIVKYLI 
Sbjct: 924  DDEGYTPLSVASQE--GHLDVAKCLVNAGADVNKAAKNGSTPLFAASYKGHLDIVKYLIN 981

Query: 189  HGADLNITNHYNNSCLMIAAYKG 211
             GA ++   +   + L  A++ G
Sbjct: 982  KGAAIDKRGYGGQTPLRGASFYG 1004

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390343602|ref|XP_798405.3| PREDICTED: uncharacterized protein LOC593853 [Strongylocentrotus purpuratus]

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 4/203 (1%)

Query: 9    GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
            GHL V++ LV+AGADV  +T+   TPL  A   G +DIVKYLI  GA+ N  N+   S L
Sbjct: 809  GHLDVVECLVNAGADVEKATEKYWTPLYIASRRGHVDIVKYLISQGANPNSVNNDGFSPL 868

Query: 69   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
             IA+ +  GHL V++ LV+AGAD+   T+   TPL A+ Y G ++IVKYLI  GA++N  
Sbjct: 869  CIASQE--GHLDVVECLVNAGADMKKPTEKGGTPLNASSYRGHVEIVKYLISQGANMNSV 926

Query: 129  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
            +    + L  A+ K  GHL V++ LV+AGADV+ +T+   TPL+AA   G +DIVK+LI 
Sbjct: 927  DVGGYTPLYNASQK--GHLDVVECLVNAGADVHKATEQDQTPLQAASLYGHVDIVKFLIS 984

Query: 189  HGADLNITNHYNNSCLMIAAYKG 211
             GA+ N       + L  A+ KG
Sbjct: 985  QGANPNSVKSNGYTPLYFASQKG 1007

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|340382873|ref|XP_003389942.1| PREDICTED: ankyrin repeat domain-containing protein 17-like [Amphimedon queenslandica]

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 131/204 (64%), Gaps = 5/204 (2%)

Query: 9   GHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           GH  ++K L+ H GADVNH  K + TPL   C +G  +I++ L++HGA+L+ T+ +N++ 
Sbjct: 266 GHTEIVKLLLEHGGADVNHVNKYKRTPLIMTCIEGHTEIIELLLKHGANLSATDSHNDTA 325

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +A  K  G   V++ L+  GADV H+ K + TPL   C +G + I++ L+E+G+++N+
Sbjct: 326 LGVACIK--GFTQVVELLLKHGADVKHTNKYKRTPLVMTCIEGHMQIIELLLEYGSEVNV 383

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
           T+  N++ L +A  KG     V++ L+  GAD+ H+ K + TPL  AC +G   IV+ L+
Sbjct: 384 TDDDNDTPLGVACMKGFAQ--VVELLLKHGADITHANKHKRTPLVMACLEGHTGIVEVLL 441

Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
           +HGAD+N+T+ +  + L++   +G
Sbjct: 442 KHGADINVTDKHKRTPLVMTCIEG 465

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|390343598|ref|XP_001184209.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Strongylocentrotus purpuratus]

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 126/202 (62%), Gaps = 3/202 (1%)

Query: 10  HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
           HL V++ LV+AGADV  +T+   TPL  A YDG +DIVKYLI  GAD ++ ++Y+    +
Sbjct: 413 HLVVVECLVNAGADVKKATEKGLTPLHGASYDGHVDIVKYLISQGADKDMGDNYDGCTPL 472

Query: 70  IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
             A + A HL V++ LVHAGADVN +T+   TPL  A Y+G ++I+KYLI  GA+ N  N
Sbjct: 473 YFASR-ADHLDVVECLVHAGADVNKATEQGWTPLFTASYNGHVEILKYLIFQGANPNSVN 531

Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
           +   + L IA+    GHL V++ LV+AGADV        TPL  A   G ++IVKYLI  
Sbjct: 532 NDGYTPLYIASL--LGHLDVVECLVNAGADVEKPMDKGLTPLHTASGRGHVEIVKYLISQ 589

Query: 190 GADLNITNHYNNSCLMIAAYKG 211
           GA+LN  +    + L  A+ +G
Sbjct: 590 GANLNSVDIDGYTPLYFASQEG 611

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390339708|ref|XP_003725071.1| PREDICTED: ankyrin-3-like [Strongylocentrotus purpuratus]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 8/203 (3%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AGHL V++ LV+AGADVN + K   TPL AA +DG +DIVKYLI  GA+ ++ ++   S 
Sbjct: 44  AGHLDVVEFLVNAGADVNKAAKKGQTPLSAASHDGHVDIVKYLISQGANPSLVDNNGYSA 103

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L IA+   AGHL V++ LV+AGADVN  TK   TPL AA +DG +DIVKYLI  G + N 
Sbjct: 104 LYIASQ--AGHLRVVECLVNAGADVNKPTKKGQTPLSAASHDGHVDIVKYLISQGVNPNS 161

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
            ++   + L IA+   AGHL V++ LV AG D    T    TPL  A  +G LD ++ L+
Sbjct: 162 VSNNGYTLLYIASQ--AGHLDVVECLVTAGGD----TLKGVTPLMVAAREGHLDCIRLLL 215

Query: 188 EHGADLNITNHYNNSCLMIAAYK 210
           E+ AD    +    + L  AA +
Sbjct: 216 ENNADTETEDAEGWTALHYAATR 238

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
ZFIN|ZDB-GENE-030131-5824	617	fem1a "fem-1 homolog a (C. ele	0.742	0.285	0.392	2.2e-27
FB|FBgn0034542	650	Fem-1 "Fem-1" [Drosophila mela	0.780	0.284	0.434	9.2e-33
FB|FBgn0038286	664	CG6966 [Drosophila melanogaste	0.810	0.289	0.370	5.4e-30
WB|WBGene00001411	656	fem-1 [Caenorhabditis elegans	0.848	0.306	0.390	3.3e-31
UNIPROTKB|P17221	656	fem-1 "Sex-determining protein	0.848	0.306	0.390	3.3e-31
UNIPROTKB|Q9UK73	627	FEM1B "Protein fem-1 homolog B	0.738	0.279	0.427	5.9e-31
UNIPROTKB|F1N162	627	FEM1B "Uncharacterized protein	0.738	0.279	0.427	5.9e-31
UNIPROTKB|E2REP8	627	FEM1B "Uncharacterized protein	0.738	0.279	0.427	5.9e-31
UNIPROTKB|I3L6T4	627	FEM1B "Uncharacterized protein	0.738	0.279	0.427	5.9e-31
RGD|1304569	627	Fem1b "fem-1 homolog b (C. ele	0.738	0.279	0.427	5.9e-31

ZFIN|ZDB-GENE-030131-5824 fem1a "fem-1 homolog a (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 314 (115.6 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 73/186 (39%), Positives = 107/186 (57%)

Query:    33 TPLRAACYDGRLDIVKYLIEH-GADLNITNHYN------NSCLMIAAYKGAGHLSVIKTL 85
             TPL  A   G L +V +L+E  GA++ +    N           + A   AGHL V+K L
Sbjct:    43 TPLLIAARYGHLPVVHFLLERCGANVALGGSVNFDGETIEGAPPLWAASAAGHLPVVKAL 102

Query:    86 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG 145
             +  GA VN++T T STPLRAAC+DG L+IV+YL+EH ADL + N + ++CLMI+ YKG  
Sbjct:   103 LEHGAPVNNTTLTNSTPLRAACFDGHLEIVRYLVEHQADLEVANRHGHTCLMISCYKG-- 160

Query:   146 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
             H  + + L+  GADVN  +   +T L      G L+I+K L++  A +   + Y  + L+
Sbjct:   161 HREIAQFLLEKGADVNRKSVKGNTALHDCAESGSLEIMKMLLKCDARME-RDGYGMTPLL 219

Query:   206 IAAYKG 211
              A+  G
Sbjct:   220 AASVTG 225

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0034542 Fem-1 "Fem-1" [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 9.2e-33, P = 9.2e-33
 Identities = 86/198 (43%), Positives = 117/198 (59%)

Query:     5 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADL----NI 59
             ++GA     +   +   A+ +       TPL  A   G +  VK L+ H   DL    N+
Sbjct:    23 WRGANDTLPVTNYITYPANFDQPDGQSLTPLTMAAMMGNVKFVKTLLSHYDVDLDRECNV 82

Query:    60 TNH----YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
                    Y  + L +AA  G GHL ++K LV AGA +NH+TK QS+PLRAACY+GRLDIV
Sbjct:    83 IYDGMVVYGATALWVAA--GMGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIV 140

Query:   116 KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
             ++LI++GAD+N TN +NN+ LMIAAYKG  HL V+KTL+  G+  N      +T L  A 
Sbjct:   141 EFLIDNGADVNATNLFNNNTLMIAAYKGH-HL-VVKTLLQNGSRANDQALCGATALHYAA 198

Query:   176 YDGRLDIVKYLIEHGADL 193
               G LD+V  L++HGA L
Sbjct:   199 ESGHLDVVVALLDHGATL 216

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0038286 CG6966 [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 5.4e-30, P = 5.4e-30
 Identities = 76/205 (37%), Positives = 116/205 (56%)

Query:    15 KTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYL-------IEHGADLNITNHYNNS 66
             K+ V  G+ +  S K   +TPL  +C +G  DIV+YL       +E    ++        
Sbjct:    26 KSSVEVGSLI--SAKVNGATPLVISCRNGHYDIVEYLLTKCRANVEQVGSVSFDGEPIED 83

Query:    67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
                +     AGHL ++K LV  GA+VN +T+T STPLRAAC+DG  +IVKYL+ HGAD  
Sbjct:    84 APPLWCAAAAGHLGIVKMLVRRGANVNSTTRTNSTPLRAACFDGHYEIVKYLVHHGADFE 143

Query:   127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             + N + ++CLMIA YKG  H  + + L+   ADVN  +   +T L      G L I++ L
Sbjct:   144 VANRHGHTCLMIACYKG--HFRIAQYLLSLNADVNRCSVKGNTALHDCAESGSLQILQLL 201

Query:   187 IEHGADLNITNHYNNSCLMIAAYKG 211
             ++HGA +++ ++Y  + L+ A+  G
Sbjct:   202 LKHGATMDV-DYYGMTPLLAASVTG 225

GO:0005575 "cellular_component" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISS

WB|WBGene00001411 fem-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 350 (128.3 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 84/215 (39%), Positives = 128/215 (59%)

Query:    23 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--HYNNSCLM----IAAYKGA 76
             D  +S +    PL  A  +G  ++V+YL+E GAD ++     ++N  +     + A   A
Sbjct:    40 DCFNSDQDGRYPLVIAARNGHANVVEYLLEIGADPSVRGVVEFDNENIQGTPPLWAASAA 99

Query:    77 GHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
             GH+ ++K L+  A ADVN +T T+STPLR ACYDG LDIVKYL+E GAD +I N + ++C
Sbjct:   100 GHIEIVKLLIEKANADVNQATNTRSTPLRGACYDGHLDIVKYLLEKGADPHIPNRHGHTC 159

Query:   136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
             LMIA+Y+    + +++ L+  G DVN  T+  +T L  A   G +++VK L++HG+ L +
Sbjct:   160 LMIASYRNK--VGIVEELLKTGIDVNKKTERGNTALHDAAESGNVEVVKILLKHGSVL-M 216

Query:   196 TNHYNNSCLMIAAYKG-IDVGRVGPGLFDRYPSAV 229
              +      LM AA  G +DV  V   L D+ PS +
Sbjct:   217 KDIQGVDPLMGAALSGFLDVLNV---LADQMPSGI 248

GO:0000003 "reproduction" evidence=IMP

GO:0042006 "masculinization of hermaphroditic germ-line" evidence=IMP

GO:0019102 "male somatic sex determination" evidence=IMP

GO:0019100 "male germ-line sex determination" evidence=IMP

UNIPROTKB|P17221 fem-1 "Sex-determining protein fem-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 350 (128.3 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 84/215 (39%), Positives = 128/215 (59%)

Query:    23 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--HYNNSCLM----IAAYKGA 76
             D  +S +    PL  A  +G  ++V+YL+E GAD ++     ++N  +     + A   A
Sbjct:    40 DCFNSDQDGRYPLVIAARNGHANVVEYLLEIGADPSVRGVVEFDNENIQGTPPLWAASAA 99

Query:    77 GHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
             GH+ ++K L+  A ADVN +T T+STPLR ACYDG LDIVKYL+E GAD +I N + ++C
Sbjct:   100 GHIEIVKLLIEKANADVNQATNTRSTPLRGACYDGHLDIVKYLLEKGADPHIPNRHGHTC 159

Query:   136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
             LMIA+Y+    + +++ L+  G DVN  T+  +T L  A   G +++VK L++HG+ L +
Sbjct:   160 LMIASYRNK--VGIVEELLKTGIDVNKKTERGNTALHDAAESGNVEVVKILLKHGSVL-M 216

Query:   196 TNHYNNSCLMIAAYKG-IDVGRVGPGLFDRYPSAV 229
              +      LM AA  G +DV  V   L D+ PS +
Sbjct:   217 KDIQGVDPLMGAALSGFLDVLNV---LADQMPSGI 248

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9UK73 FEM1B "Protein fem-1 homolog B" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 79/185 (42%), Positives = 110/185 (59%)

Query:    31 QSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
             +STPL  A  +G   +V+ L+EH          +    +  +    +    GAGH  V+K
Sbjct:    46 RSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVK 105

Query:    84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
              LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CLMIAAYKG
Sbjct:   106 LLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAYKG 165

Query:   144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
               H  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + N +  + 
Sbjct:   166 --HTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAI-VVNGHGMTP 222

Query:   204 LMIAA 208
             L +AA
Sbjct:   223 LKVAA 227

GO:0006915 "apoptotic process" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0005123 "death receptor binding" evidence=IMP;NAS

GO:0006917 "induction of apoptosis" evidence=NAS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:2000001 "regulation of DNA damage checkpoint" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1N162 FEM1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 79/185 (42%), Positives = 110/185 (59%)

Query:    31 QSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
             +STPL  A  +G   +V+ L+EH          +    +  +    +    GAGH  V+K
Sbjct:    46 RSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVK 105

Query:    84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
              LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CLMIAAYKG
Sbjct:   106 LLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAYKG 165

Query:   144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
               H  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + N +  + 
Sbjct:   166 --HTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAI-VVNGHGMTP 222

Query:   204 LMIAA 208
             L +AA
Sbjct:   223 LKVAA 227

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2REP8 FEM1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 79/185 (42%), Positives = 110/185 (59%)

Query:    31 QSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
             +STPL  A  +G   +V+ L+EH          +    +  +    +    GAGH  V+K
Sbjct:    46 RSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVK 105

Query:    84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
              LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CLMIAAYKG
Sbjct:   106 LLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAYKG 165

Query:   144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
               H  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + N +  + 
Sbjct:   166 --HTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAI-VVNGHGMTP 222

Query:   204 LMIAA 208
             L +AA
Sbjct:   223 LKVAA 227

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|I3L6T4 FEM1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 347 (127.2 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 79/185 (42%), Positives = 110/185 (59%)

Query:    31 QSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
             +STPL  A  +G   +V+ L+EH          +    +  +    +    GAGH  V+K
Sbjct:    46 RSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVK 105

Query:    84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
              LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CLMIAAYKG
Sbjct:   106 LLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAYKG 165

Query:   144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
               H  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + N +  + 
Sbjct:   166 --HTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAI-VVNGHGMTP 222

Query:   204 LMIAA 208
             L +AA
Sbjct:   223 LKVAA 227

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

RGD|1304569 Fem1b "fem-1 homolog b (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 79/185 (42%), Positives = 110/185 (59%)

Query:    31 QSTPLRAACYDGRLDIVKYLIEH-------GADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
             +STPL  A  +G   +V+ L+EH          +    +  +    +    GAGH  V+K
Sbjct:    46 RSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVK 105

Query:    84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
              LV  GA+VNH+T T STPLRAAC+DGRLDIVKYL+E+ A+++I N Y+N+CLMIAAYKG
Sbjct:   106 LLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIANKYDNTCLMIAAYKG 165

Query:   144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
               H  V++ L+   AD N      +T L  A   G +DIVK LI+  A + + N +  + 
Sbjct:   166 --HTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAI-VVNGHGMTP 222

Query:   204 LMIAA 208
             L +AA
Sbjct:   223 LKVAA 227

GO:0002070 "epithelial cell maturation" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005123 "death receptor binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA;ISO

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA;ISO

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	237
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-28
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-23
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-19
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-19
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-18
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-16
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-16
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-16
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-15
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-13
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-12
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-11
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-09
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	5e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-07
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-06
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (271), Expect = 5e-30
 Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
           N   +   TPL  A  +G L++VK L+E+GAD+N  ++   + L +AA    GHL ++K 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN--GHLEIVKL 58

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
           L+  GADVN   K  +TPL  A  +G LD+VK L++HGAD+N  +    + L +AA    
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-- 116

Query: 145 GHLSVIKTLV 154
           GHL V+K L+
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (265), Expect = 3e-29
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 2/119 (1%)

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           N   +   TPL  A  +G L++VK L+E+GAD+N  ++   + L +AA  G  HL ++K 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG--HLEIVKL 58

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           L+  GADVN   K  +TPL  A  +G LD+VK L++HGAD+N  +    + L +AA  G
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  102 bits (255), Expect = 9e-28
 Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 58  NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 117
           N  +    + L +AA  G  HL V+K L+  GADVN       TPL  A  +G L+IVK 
Sbjct: 1   NARDEDGRTPLHLAASNG--HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
           L+E GAD+N  +   N+ L +AA    G+L V+K L+  GADVN   K   TPL  A  +
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARN--GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

Query: 178 GRLDIVKYLI 187
           G L++VK L+
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  103 bits (259), Expect = 1e-25
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 26/206 (12%)

Query: 12  SVIKTLVHAGADVNHSTKTQSTPLRAACYDGR-----LDIVKYLIEHGADLNITNHYNNS 66
            V+K L+  GAD+N STK  STPL              +IVK L+E+GA++N  ++   +
Sbjct: 49  DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT 108

Query: 67  CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA--CYDGRLDIVKYLIEHGAD 124
            L+ A  K +   S+++ L+  GA+VN         L          L I+K LI+ G D
Sbjct: 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD 168

Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
           +N  N                    +  L+  G  +N       TPL  A Y+   + VK
Sbjct: 169 INAKN-------------------RVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVK 209

Query: 185 YLIEHGADLNITNHYNNSCLMIAAYK 210
           YL++ GA+ N+ N Y ++ L IA   
Sbjct: 210 YLLDLGANPNLVNKYGDTPLHIAILN 235

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.0 bits (234), Expect = 1e-24
 Identities = 52/119 (43%), Positives = 69/119 (57%), Gaps = 4/119 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +AA  G  HL V+K L+  GADVN       TPL  A  +G L+IVK L+E GAD+N  
Sbjct: 12  HLAASNG--HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           +   N+ L +AA    G+L V+K L+  GADVN   K   TPL  A  +G L++VK L+
Sbjct: 70  DKDGNTPLHLAARN--GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.6 bits (223), Expect = 3e-23
 Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A  +G L++VK L+E GAD+N+ +   ++ L +AA  G  +L ++K L+  GADVN 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNG--NLEIVKLLLEHGADVNA 56

Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
             K  +T L  A  +G L+IVK L+EHGAD+N+ +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.6 bits (223), Expect = 3e-23
 Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           L  A  +G L++VK L+E GAD+N+ +   ++ L +AA  G  +L ++K L+  GADVN 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNG--NLEIVKLLLEHGADVNA 56

Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
             K  +T L  A  +G L+IVK L+EHGAD+N+ +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 90.1 bits (224), Expect = 7e-21
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRA-ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
           +++ L+ AGADVN   +   TPL         LD++K LI+ GAD+N  +    + L + 
Sbjct: 65  IVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124

Query: 72  AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY----DGRLDIVKYLIEHGADLNI 127
                 +  VI+ L+  GADVN       TPL  A      +  +++++ LI+ GAD+  
Sbjct: 125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYA 182

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR--AACYDGRLDIVKY 185
            +    S L            +++ L+ AG D   +    +TPL   A     +  +V  
Sbjct: 183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP 242

Query: 186 LIEHGADLNITNHYNNSCLMIAAY 209
           L+  G  +N  N Y  + L  AA 
Sbjct: 243 LLIAGISINARNRYGQTPLHYAAV 266

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 81.9 bits (203), Expect = 2e-20
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 6/94 (6%)

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA  G  +L ++K L+  GADVN       T L  A  +G L+IVK L+EHGAD+N 
Sbjct: 1   LHLAAKNG--NLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161
            +   N+ L +AA    G+L ++K L+  GAD+N
Sbjct: 57  KDKDGNTALHLAARN--GNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 1  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           +AA  G  +L ++K L+  GADVN       T L  A  +G L+IVK L+EHGAD+N  
Sbjct: 2  HLAAKNG--NLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
          +   N+ L +AA    G+L ++K L+  GAD+N
Sbjct: 58 DKDGNTALHLAARN--GNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 86.3 bits (213), Expect = 2e-19
 Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYNNSCLMIA 71
           ++  L+  GADVN       TPL     +G   + ++ LI  GAD+N  +    + L  A
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA 348

Query: 72  AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
           +        VI TL+  GA+VN       TP+  A     + I+  L+++GAD+   +  
Sbjct: 349 STLDRNKDIVI-TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK 407

Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHG 190
             + L  A      ++SV KTL+  GA+VN   K  STPL  AC    +LD+++ L+++G
Sbjct: 408 IGTALHFALCGTNPYMSV-KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG 466

Query: 191 ADLNITNHYNNSCLMIA-AYKGI 212
           AD+N  N  N   L+IA  Y GI
Sbjct: 467 ADVNAINIQNQYPLLIALEYHGI 489

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 82.8 bits (205), Expect = 2e-18
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)

Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAACYD--GRLDIVKYLIEHGADLNITNHYNNSCL 68
             ++K L+  GA+VN       TPL  A         IV+YL+++GA++NI N    + L
Sbjct: 86  KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145

Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ----------------STPLRAACYDGRL 112
            +        L ++K L+  G D+N   +                   TPL  A Y+   
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205

Query: 113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           + VKYL++ GA+ N+ N Y ++ L IA      +  + K L++ G  +  
Sbjct: 206 EFVKYLLDLGANPNLVNKYGDTPLHIAILN--NNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 43  RLDIVKYLIEHGADLNITNHYNNSCL-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
            ++ V+ L+  GAD+N    Y  + L +   Y       +++ L+ AGADVN   +   T
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 102 PLRA-ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           PL         LD++K LI+ GAD+N  +    + L +       +  VI+ L+  GADV
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV 145

Query: 161 NHSTKTQSTPLRAACY----DGRLDIVKYLIEHGADLNITNHYNNSCL 204
           N       TPL  A      +  +++++ LI+ GAD+   +    S L
Sbjct: 146 NALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL 191

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 76.0 bits (186), Expect = 1e-16
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG---AGHLSV 81
                    PL +A   G   IVK L+  GAD+N  +   ++ L +AA  G    G++ V
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 82  IKTLVHAGA---DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
            K L+ AGA     N   +  +TPL  A  +G  DIV+ L+E GAD N  N Y  + L  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHS 163
           AA    G + ++K L+  G  ++  
Sbjct: 187 AA--KNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 75.2 bits (184), Expect = 2e-16
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 7/182 (3%)

Query: 34  PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGAGHLSVIKTLVHAGADV 92
            L          ++  L+   +            L +  A   A  LS +   +     +
Sbjct: 7   ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG---AGHLSV 149
                    PL +A   G   IVK L+  GAD+N  +   ++ L +AA  G    G++ V
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 150 IKTLVHAGA---DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
            K L+ AGA     N   +  +TPL  A  +G  DIV+ L+E GAD N  N Y  + L  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 207 AA 208
           AA
Sbjct: 187 AA 188

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 35  LRAACYDGRLD--IVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
           +     D  ++  I K L+ +GAD+N+   H  N+ L  A       L+  + L+  GA+
Sbjct: 136 IDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT--ELLLSYGAN 193

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
           VN   KT ++PL  A       IV  L+E+GA  +  +   N+ L I+         ++K
Sbjct: 194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY-CKDYDILK 252

Query: 152 TLVHAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA-- 208
            L+  G DVN  S     T L ++    R   +K L+E+GAD+N  N Y  + L  A   
Sbjct: 253 LLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNSYKLTPLSSAVKQ 310

Query: 209 YKGIDVGRV 217
           Y  I++GR+
Sbjct: 311 YLCINIGRI 319

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA  G  +L ++K L+  GADVN       T L  A  +G L+IVK L+EHGAD+N 
Sbjct: 1   LHLAAKNG--NLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 196 TNHYNNSCLMIAAYKG 211
            +   N+ L +AA  G
Sbjct: 57  KDKDGNTALHLAARNG 72

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 76.6 bits (188), Expect = 4e-16
 Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
           ++ TL+  GA+VN       TP+  A     + I+  L+++GAD+   +    + L  A 
Sbjct: 357 IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL 416

Query: 73  YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHY 131
                ++SV KTL+  GA+VN   K  STPL  AC    +LD+++ L+++GAD+N  N  
Sbjct: 417 CGTNPYMSV-KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ 475

Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
           N   L+IA      +  ++  L+H GA++  S
Sbjct: 476 NQYPLLIA----LEYHGIVNILLHYGAELRDS 503

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 76.2 bits (187), Expect = 4e-16
 Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           +G   +++  +  GAD+NH       PL  A   G  DI+K LI++G D         S 
Sbjct: 45  SGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD--------TSI 96

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L I   +      +IKT++  G DVN       T L  A   G L+ +K L E+GAD+NI
Sbjct: 97  LPIPCIEK----DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI 152

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
            +  +N C  I          +IK L+  GA  N       +PL  A   G    +K LI
Sbjct: 153 ED--DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210

Query: 188 EHGADLNITNHYNN 201
           +HG   +I N   N
Sbjct: 211 DHGN--HIMNKCKN 222

Length = 434

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 73.3 bits (180), Expect = 5e-15
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 20/181 (11%)

Query: 41  DGRLDIVKYLIEHGADLN-ITNHYNNS-CLMIAAYKGAGH-LSVIKTLVHAGADVNHSTK 97
               DIVK  I  GA++N + N Y+   C +++  K   H L ++K L+  GAD+N    
Sbjct: 48  SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS 107

Query: 98  TQSTPLRAACYDG---RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH---LSVIK 151
              TPL     +G    L+I+ ++IE+GAD  + +    + L +  Y  + H   + +IK
Sbjct: 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV--YLQSNHHIDIEIIK 165

Query: 152 TLVHAGADVN-HSTKTQSTPLRAACYDGR------LDIVKYLIEHGADLNITNHYNNSCL 204
            L+  G D+N H+ K +   L   CY          DI+K  +++G  +N  N  +    
Sbjct: 166 LLLEKGVDINTHNNKEKYDTLH--CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF 223

Query: 205 M 205
           M
Sbjct: 224 M 224

Length = 489

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 72.7 bits (178), Expect = 7e-15
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 8   AGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           +G +  I+ ++    + +N S    +TPL  A   G   IV+  I+HGAD+N  N     
Sbjct: 11  SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH 70

Query: 67  CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
            L+ A   GA    +IK L+  G D        ++ L   C +   D++K +++ G D+N
Sbjct: 71  PLLTAIKIGAH--DIIKLLIDNGVD--------TSILPIPCIEK--DMIKTILDCGIDVN 118

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           I +    + L  A  KG   L  IK L   GADVN        P+  A      DI+K L
Sbjct: 119 IKDAELKTFLHYAIKKG--DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
           +E GA  N+ ++   S L  AA  G
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYG 201

Length = 434

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 23/223 (10%)

Query: 2   IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLN 58
           I  YK    L ++K L+  GAD+N       TPL     +G    L+I+ ++IE+GAD  
Sbjct: 82  IKDYKHM--LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT 139

Query: 59  ITNHYNNSCLMIAAYKGAGH---LSVIKTLVHAGADVN-HSTKTQSTPLRAACYDGR--- 111
           + +    + L +  Y  + H   + +IK L+  G D+N H+ K +   L   CY      
Sbjct: 140 LLDKDGFTMLQV--YLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH--CYFKYNID 195

Query: 112 ---LDIVKYLIEHGADLNITNHYNNSCLMIAA----YKGAGHLSVIKTLVHAGADVNHST 164
               DI+K  +++G  +N  N  +    M       Y        I   + +  D+N   
Sbjct: 196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD 255

Query: 165 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
           +    PL  +       I +YL++ G D+NI     N+CL  A
Sbjct: 256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298

Length = 489

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 2   IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA--CYDGRLDI------------- 46
            A  K +   S+++ L+  GA+VN         L          L I             
Sbjct: 112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA 171

Query: 47  ---VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
              V YL+ +G  +NI + Y  + L  A Y    +   +K L+  GA+ N   K   TPL
Sbjct: 172 KNRVNYLLSYGVPINIKDVYGFTPLHYAVY--NNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHY 131
             A  +   +I K L+ +G  +      
Sbjct: 230 HIAILNNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 5/204 (2%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
            IK L+  GA  +       + L  A  +G +  V+ L++ G   +   + +    +  A
Sbjct: 50  AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA 109

Query: 73  YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 132
                 L ++K L+  GAD +     + +PL  A   G +  ++ LI+H A L+I +   
Sbjct: 110 TI-LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168

Query: 133 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGA 191
            + L+IA  K  G +++ K L+ +GA++++  K      L  A  + ++DIV+  I+ GA
Sbjct: 169 CTPLIIAMAK--GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Query: 192 DLNI-TNHYNNSCLMIAAYKGIDV 214
           D NI        C ++     +  
Sbjct: 227 DCNIMFMIEGEECTILDMICNMCT 250

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 1  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           +AA  G  +L ++K L+  GADVN   K  +T L  A  +G L+IVK L+EHGAD+N+ 
Sbjct: 33 HLAARNG--NLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Query: 61 N 61
          +
Sbjct: 91 D 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 10  HLSVIKTLVHAGADVNHSTKTQSTPLRAACY----DGRLDIVKYLIEHGADLNITNHYNN 65
           +  VI+ L+  GADVN       TPL  A      +  +++++ LI+ GAD+   +    
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFR 188

Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR--AACYDGRLDIVKYLIEHGA 123
           S L            +++ L+ AG D   +    +TPL   A     +  +V  L+  G 
Sbjct: 189 SLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI 248

Query: 124 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
            +N  N Y  + L  AA     +    + L+  GAD+N  +   +TPL
Sbjct: 249 SINARNRYGQTPLHYAAV--FNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 64.3 bits (156), Expect = 7e-12
 Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 30/229 (13%)

Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           L + + L+  GADVN       TP+  A   G   +V  L+ +GAD+NI    + S L  
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 71  AAYK----------------GAGHLSVIKT-----------LVHAGADVNHSTKTQSTPL 103
           A                       LS++K            L  AG  VN     ++TPL
Sbjct: 218 AVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPL 277

Query: 104 RAACYDGRLD-IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
             A     L  +V  L+E GAD+N  N    + L + A  G    + I+TL+  GADVN 
Sbjct: 278 HHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTEN-IRTLIMLGADVNA 336

Query: 163 STKTQSTPL-RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
           + +   TPL +A+  D   DIV  L+E GA++N  ++ + + +  AA +
Sbjct: 337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVR 385

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 5e-11
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           L ++K L+  GAD +     + +PL  A   G +  ++ LI+H A L+I +    + L+I
Sbjct: 115 LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII 174

Query: 71  AAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNIT- 128
           A  K  G +++ K L+ +GA++++  K      L  A  + ++DIV+  I+ GAD NI  
Sbjct: 175 AMAK--GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMF 232

Query: 129 ---NHYNNSCLMIAAY 141
                      MI   
Sbjct: 233 MIEGEECTILDMICNM 248

Length = 413

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 13/205 (6%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLR-AACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMI 70
            ++ L+  G DVN   +  S  L      D ++ IVK LI++GAD+N   +     C ++
Sbjct: 18  ALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVL 77

Query: 71  AAYKGAGHL--SVIKTLVHAGADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADL 125
              +   +    ++K L+  GAD+N  T    +P+    Y+      D++++L+  G ++
Sbjct: 78  RNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINV 137

Query: 126 N-ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTP----LRAACYDGR 179
           N + N    + L +     +    VIK L+  G ++   T     TP    LR       
Sbjct: 138 NDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVIS 197

Query: 180 LDIVKYLIEHGADLNITNHYNNSCL 204
           + ++KYLI+ G ++   N+ + S L
Sbjct: 198 IKVIKYLIKKGVNIETNNNGSESVL 222

Length = 494

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 23/216 (10%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           A +L V+K+L+  G +VN       TPL   C +     +K +I      ++        
Sbjct: 47  ARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTL---- 102

Query: 68  LMIAAYKGAGH---LSVIKTLVHAGADVNHSTKTQSTPLRAAC---YDGRLD--IVKYLI 119
               A K A +   + + K ++      N     Q+  L        D  ++  I K L+
Sbjct: 103 ---VAIKDAFNNRNVEIFKIIL-----TNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLL 154

Query: 120 EHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 178
            +GAD+N+   H  N+ L  A       L+  + L+  GA+VN   KT ++PL  A    
Sbjct: 155 SYGADINMKDRHKGNTALHYATENKDQRLT--ELLLSYGANVNIPDKTNNSPLHHAVKHY 212

Query: 179 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
              IV  L+E+GA  +  +   N+ L I+     D 
Sbjct: 213 NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDY 248

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86
          T L  A   GRL++VKYL+E G D+N T+   N+ L IAA    G+L V+K L+
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN--GNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
           T L  A   GRL++VKYL+E G D+N T+   N+ L IAA    G+L V+K L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN--GNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 4   AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNH 62
           A  G      +KTL+  GA+VN   K  STPL  AC    +LD+++ L+++GAD+N  N 
Sbjct: 415 ALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI 474

Query: 63  YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 95
            N   L+IA      +  ++  L+H GA++  S
Sbjct: 475 QNQYPLLIA----LEYHGIVNILLHYGAELRDS 503

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G L  IK L   GADVN        P+  A      DI+K L+E GA  N+ ++   S L
Sbjct: 135 GDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194

Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
             AA    G  + IK L+  G  + +  K   TPL  A    R   ++ LI + A +N  
Sbjct: 195 HNAA--EYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINN-ASINDQ 250

Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC-YDGRLDIVKYLI 187
           +  + S  +  A      + +I  L++  AD++        P+  A  Y  +  ++K +I
Sbjct: 251 D-IDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDII 309

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRL-----DIVKYLIEHGADLNITNHYNNSC 67
           ++K L+ +GADVN       TPL  A  +G       ++ K L+E GADL++ N  +   
Sbjct: 88  IVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG 147

Query: 68  ---LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 124
              L  AA  G   +  ++ L+ AGAD N       T L  A  +GR+++VK L++ G  
Sbjct: 148 NTPLHWAALNGDADI--VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Query: 125 LNITNHYNN 133
           L++      
Sbjct: 206 LSLLKFNLE 214

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 21/43 (48%), Positives = 27/43 (62%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           T L  A   GRL++VKYL+E G D+N T+   N+ L IAA  G
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45

Length = 54

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 44/197 (22%)

Query: 24  VNHSTKTQSTPLRAACYDGR---LDIVKYLIEHGADLN-ITNHYNNSCL-MIAAYKGAGH 78
           VN       TP+ + C +     ++I+K+LIE+GAD+N  T   N S L    ++     
Sbjct: 44  VNDCNDLYETPIFS-CLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVE 102

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPL-RAAC-YDGRLDIVKYLIEHGAD-LNITNHYNNSC 135
             ++K L+ +G+ +    +     L    C ++ R++++K LI+ G   LN     NN  
Sbjct: 103 PEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNN-- 160

Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
            ++ +Y                  + HS K                I  +L   G D+N 
Sbjct: 161 -ILYSYI-----------------LFHSDK---------------KIFDFLTSLGIDINE 187

Query: 196 TNHYNNSCLMIAAYKGI 212
           TN    +C  +  ++ +
Sbjct: 188 TNKSGYNCYDLIKFRNL 204

Length = 209

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G+ ++++ L+ A  D +       TPL  A   G  D V  L++H  +++I +   N+ L
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
             A    A H  + + L H  +  +         L  A     L  +K L++ G +++  
Sbjct: 596 WNAI--SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSE 651

Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
           +H   + L +A      H+ +++ L+  GADV+ +
Sbjct: 652 DHQGATALQVAM--AEDHVDMVRLLIMNGADVDKA 684

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 17 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
          L H   D+N +    +TPL  A   G L++V++L++ G DLN+ +    + L +A
Sbjct: 2  LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
           L H   D+N +    +TPL  A   G L++V++L++ G DLN+ +    + L +A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
           L H   D+N +    +TPL  A   G L++V++L++ G DLN+ +    + L +A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 1   MIAAYKG---AGHLSVIKTLVHAGA---DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 54
            +AA  G    G++ V K L+ AGA     N   +  +TPL  A  +G  DIV+ L+E G
Sbjct: 111 HLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG 170

Query: 55  ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 95
           AD N  N Y  + L  AA    G + ++K L+  G  ++  
Sbjct: 171 ADPNSRNSYGVTALDPAA--KNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 3/195 (1%)

Query: 14  IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73
           ++ L+H G   N +    + PL  A       IV  L+ HGAD N  +  + + L   + 
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114

Query: 74  KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
                +  I  LV  GA +N+S   +      AC D    + K ++  G +  I + +  
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGK 174

Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD--GRLDIVKYLIEHGA 191
           + +           S I  ++  G   +      +TPL   C      +DI+  L+    
Sbjct: 175 NHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST 233

Query: 192 DLNITNHYNNSCLMI 206
           D+N  N + +S L +
Sbjct: 234 DVNKQNKFGDSPLTL 248

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 64  NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
             + L  AA  G   L ++K L+  G D+N + +  +T L  A  +G L+++K L+
Sbjct: 1   GRTALHKAAISG--RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
             + L  AA  G   L ++K L+  G D+N + +  +T L  A  +G L+++K L+
Sbjct: 1   GRTALHKAAISG--RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 47  VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
            + L+  GAD N  ++   + L IA   G  H+ V++ L+  GAD     K   TPL  A
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANG--HVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 107 CYDGRLDIVKYLIEH 121
             +G  ++V+ L  H
Sbjct: 156 EENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 115 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 174
            + L+  GAD N  ++   + L IA   G  H+ V++ L+  GAD     K   TPL  A
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANG--HVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 175 CYDGRLDIVKYLIEH 189
             +G  ++V+ L  H
Sbjct: 156 EENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 22/216 (10%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADLN-ITNHYNNSCL 68
           ++K L+  GAD+N  T    +P+    Y+      D++++L+  G ++N + N    + L
Sbjct: 90  IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL 149

Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTP----LRAACYDGRLDIVKYLIEHGA 123
            +     +    VIK L+  G ++   T     TP    LR       + ++KYLI+ G 
Sbjct: 150 HMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV 209

Query: 124 DLNITNHYNNSCL-------MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP-LRAAC 175
           ++   N+ + S L        I + K    L+ I   +     +N   K    P L +A 
Sbjct: 210 NIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYI----KINKKDKKGFNPLLISAK 265

Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            D   +   YL++ G D+   +   ++ L  A   G
Sbjct: 266 VDNY-EAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG 300

Length = 494

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 16/153 (10%)

Query: 1   MIAAYKGAGH---LSVIKTLVHAGADVN-HSTKTQSTPLRAACYDGR------LDIVKYL 50
           M+  Y  + H   + +IK L+  G D+N H+ K +   L   CY          DI+K  
Sbjct: 148 MLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH--CYFKYNIDRIDADILKLF 205

Query: 51  IEHGADLNITNHYNNSCLMIAA----YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
           +++G  +N  N  +    M       Y        I   + +  D+N   +    PL  +
Sbjct: 206 VDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYS 265

Query: 107 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
                  I +YL++ G D+NI     N+CL  A
Sbjct: 266 VSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298

Length = 489

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNH 62
          TPL  A  +G L++VK L+E GAD+N  + 
Sbjct: 4  TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNH 130
           TPL  A  +G L++VK L+E GAD+N  + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNH 198
           TPL  A  +G L++VK L+E GAD+N  + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 14  IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73
            + L+  GAD N       TPL  AC +G + +V+ L+E GAD  + +    + L +A  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 74  KGAG 77
            G  
Sbjct: 158 NGFR 161

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 82  IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 141
            + L+  GAD N       TPL  AC +G + +V+ L+E GAD  + +    + L +A  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 142 KGAG 145
            G  
Sbjct: 158 NGFR 161

Length = 664

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 1/111 (0%)

Query: 102 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGAGHLSVIKTLVHAGADV 160
            L          ++  L+   +            L +  A   A  LS +   +     +
Sbjct: 7   ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66

Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
                    PL +A   G   IVK L+  GAD+N  +   ++ L +AA  G
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG 117

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 51
            AA  G   L ++K L+  G D+N + +  +T L  A  +G L+++K L+
Sbjct: 6  HKAAISG--RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 209
            + L+  GAD N       TPL  AC +G + +V+ L+E GAD  + +    + L +A  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 210 KG 211
            G
Sbjct: 158 NG 159

Length = 664

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAA--CYDGRL--DIVKYLIEHGADLNITNHYNNS 66
           + ++K L+  GADVN  T+  +         ++  +  +I+K LI+ G+ +   +    +
Sbjct: 66  VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125

Query: 67  CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA-ACYDGRLDIVKYLIEHGADL 125
            L +        ++VIK L+ +G    +     +  L +   +     I  +L   G D+
Sbjct: 126 LLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI 185

Query: 126 NITNHYNNSCLMIAAYKG 143
           N TN    +C  +  ++ 
Sbjct: 186 NETNKSGYNCYDLIKFRN 203

Length = 209

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNI 59
          TPL  A  +G L++VK L+EHGAD+N 
Sbjct: 4  TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNI 127
           TPL  A  +G L++VK L+EHGAD+N 
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNI 195
           TPL  A  +G L++VK L+EHGAD+N 
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 14/74 (18%)

Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAAC--------YDGRLDIVKYLIEHGADLNITNH 198
             ++K  ++ GA+VN      STPL   C        Y   LDIVK LIE+GAD+N  N 
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPL---CTILSNIKDYKHMLDIVKILIENGADINKKNS 107

Query: 199 YNNS---CLMIAAY 209
              +   CL+   Y
Sbjct: 108 DGETPLYCLLSNGY 121

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 53
           GH+ V++ L+  GAD     K   TPL  A  +G  ++V+ L  H
Sbjct: 126 GHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNI 59
          TPL  A  +G L++VK L++ GAD+N 
Sbjct: 4  TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNI 127
           TPL  A  +G L++VK L++ GAD+N 
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNI 195
           TPL  A  +G L++VK L++ GAD+N 
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 65
             L+ +K L+  G +V+      +T L+ A  +  +D+V+ LI +GAD++  N  ++
Sbjct: 633 NDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDD 689

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG4412|consensus	226		100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02795	437	ankyrin-like protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02792	631	ankyrin-like protein; Provisional	99.98
PHA02917	661	ankyrin-like protein; Provisional	99.98
KOG4177|consensus	1143		99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.97
KOG0508|consensus	615		99.97
KOG4177|consensus	1143		99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
KOG0502|consensus	296		99.96
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.96
KOG0502|consensus	296		99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG0507|consensus	854		99.94
KOG0505|consensus	527		99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0507|consensus	854		99.91
KOG0514|consensus	452		99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0514|consensus	452		99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0512|consensus	228		99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG4369|consensus	2131		99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0505|consensus	527		99.87
KOG0512|consensus	228		99.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
KOG3676|consensus	782		99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
KOG0195|consensus	448		99.83
KOG4369|consensus	2131		99.82
KOG0195|consensus	448		99.82
KOG3676|consensus	782		99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
KOG4214|consensus	117		99.71
KOG4214|consensus	117		99.69
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.61
KOG0515|consensus	752		99.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.6
KOG1710|consensus	396		99.59
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.58
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
KOG1710|consensus	396		99.51
KOG0515|consensus	752		99.46
KOG0782|consensus	1004		99.16
KOG0783|consensus	1267		99.15
PF13606	30	Ank_3: Ankyrin repeat	99.05
PF13606	30	Ank_3: Ankyrin repeat	99.03
KOG0783|consensus	1267		98.99
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.99
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.96
KOG0818|consensus	669		98.96
KOG0506|consensus	622		98.92
KOG0506|consensus	622		98.87
KOG0818|consensus	669		98.84
KOG3609|consensus	822		98.79
KOG0782|consensus	1004		98.67
KOG0511|consensus	516		98.67
KOG0705|consensus	749		98.65
KOG0705|consensus	749		98.64
KOG0522|consensus	560		98.62
KOG0522|consensus	560		98.57
KOG3609|consensus	822		98.52
KOG0521|consensus	785		98.38
KOG0511|consensus	516		98.37
KOG2384|consensus	223		98.3
KOG0521|consensus	785		98.23
KOG2384|consensus	223		98.19
KOG0520|consensus	975		98.01
KOG0520|consensus	975		97.95
KOG2505|consensus	591		97.76
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.49
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.41
KOG2505|consensus	591		96.99
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.45
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.01
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.88
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.26

>KOG4412|consensus

Probab=100.00  E-value=1.2e-42  Score=230.71  Aligned_cols=202  Identities=31%  Similarity=0.403  Sum_probs=186.3

Q ss_pred             hhhccCCcHHHHHHHHHcCC-CCCCCCC-CCCcHHHHHHHcCChhHHHHHH-HcCCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGA-DVNHSTK-TQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~-~~~~~~~-~~~t~l~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      +.++....+.-++.+++... .++.++. +|+|||||||..|+.+++++|+ +-+..++-.|..|+||||.|+  +.|+.
T Consensus         8 ~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~--s~g~~   85 (226)
T KOG4412|consen    8 KAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA--SNGND   85 (226)
T ss_pred             HHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh--hcCcH
Confidence            34566667777888888776 5777665 9999999999999999999999 557788888999999999999  55999


Q ss_pred             HHHHHHHHc-CCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          80 SVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        80 ~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      ++++.|+.+ |++++..+..|.|+||+|+..|..++.++|+++|+.++.+|..|.||+|-|+..  |+..++++|+..|+
T Consensus        86 evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAav--Gklkvie~Li~~~a  163 (226)
T KOG4412|consen   86 EVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAV--GKLKVIEYLISQGA  163 (226)
T ss_pred             HHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhc--cchhhHHHHHhcCC
Confidence            999999997 999999999999999999999999999999999999999999999999999988  99999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy8421         159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY  209 (237)
Q Consensus       159 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  209 (237)
                      .+|.+|.+|+||||.|...|+.++..+|+++|++++..|+.| ||+.+|+-
T Consensus       164 ~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  164 PLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            999999999999999999999999999999999999999988 99888763

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.4e-40  Score=261.01  Aligned_cols=217  Identities=25%  Similarity=0.282  Sum_probs=199.3

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+++++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..  |+.++
T Consensus         6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~--g~~~~   83 (413)
T PHA02875          6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE--GDVKA   83 (413)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC--CCHHH
Confidence            6789999999999999999999999999999999999999999999999999999998888899999999955  99999


Q ss_pred             HHHHHHcCCCCc-cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          82 IKTLVHAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        82 ~~~ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      +++|++.|.... ..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++|+++
T Consensus        84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~--~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM--GDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhcCCCC
Confidence            999999987654 4456799999999999999999999999999999999999999999988  9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCC-cHHHHHHHhCccccccCcccccc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN-SCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|..  ++...+++.
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~--~iv~~Ll~~  224 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI--DIVRLFIKR  224 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH--HHHHHHHHC
Confidence            99999999999999999999999999999999999998875 889999988754  444444443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=259.12  Aligned_cols=205  Identities=22%  Similarity=0.316  Sum_probs=188.7

Q ss_pred             cCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421           7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV   86 (237)
Q Consensus         7 ~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll   86 (237)
                      ..++.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+.+..+++++|+
T Consensus        48 ~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         48 KGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             cCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999999999999999865444689999999


Q ss_pred             HcCCCCcc-CCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC
Q psy8421          87 HAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK  165 (237)
Q Consensus        87 ~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (237)
                      +.|++++. .+..|.||++ |+..++.+++++|++.|++++..+..|.||+|+|+..+.+..+++++|+++|++++.+|.
T Consensus       128 ~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        128 QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH  206 (446)
T ss_pred             HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC
Confidence            99999985 6889999997 667799999999999999999999999999999998765678999999999999999999


Q ss_pred             CCCCHHHHHHHcC--ChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         166 TQSTPLRAACYDG--RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       166 ~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      .|.||||+|+..+  +.+++++|+. |++++.+|..|.||||+|+..+..
T Consensus       207 ~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        207 DGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             CCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCh
Confidence            9999999999876  7889999884 999999999999999999998753

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=262.50  Aligned_cols=205  Identities=29%  Similarity=0.370  Sum_probs=189.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh------------------------------------
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD------------------------------------   45 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~------------------------------------   45 (237)
                      ||.|++.|+.+++++|++.|++++..+..|.||||+||..|+.+                                    
T Consensus        41 Lh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~L  120 (477)
T PHA02878         41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKII  120 (477)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHH
Confidence            67899999999999999999999999999999999999876543                                    


Q ss_pred             ----------------------------HHHHHHHcCCCccccCcC-CCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC
Q psy8421          46 ----------------------------IVKYLIEHGADLNITNHY-NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST   96 (237)
Q Consensus        46 ----------------------------~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~   96 (237)
                                                  ++++|+++|++++..+.. |.||||+|+..  |+.+++++|++.|++++..+
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~--~~~~iv~~Ll~~gad~n~~d  198 (477)
T PHA02878        121 LTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN--KDQRLTELLLSYGANVNIPD  198 (477)
T ss_pred             HhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC--CCHHHHHHHHHCCCCCCCcC
Confidence                                        666677778888888888 99999999955  99999999999999999999


Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHH
Q psy8421          97 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAAC  175 (237)
Q Consensus        97 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~  175 (237)
                      ..|.||+|.|+..++.+++++|++.|++++.++..|.||||+|+... ++.+++++|+++|++++.++. .|.||||.| 
T Consensus       199 ~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~-~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A-  276 (477)
T PHA02878        199 KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC-KDYDILKLLLEHGVDVNAKSYILGLTALHSS-  276 (477)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhc-CCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-
Confidence            99999999999999999999999999999999999999999999642 689999999999999998876 799999999 


Q ss_pred             HcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       176 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                       .++.+++++|+++|++++..|..|.||+|+|+..+
T Consensus       277 -~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        277 -IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             -ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence             56789999999999999999999999999999854

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=263.89  Aligned_cols=214  Identities=31%  Similarity=0.478  Sum_probs=173.3

Q ss_pred             hccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC--CHH
Q psy8421           5 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC--YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG--HLS   80 (237)
Q Consensus         5 a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~   80 (237)
                      |+..|+.+++++|++.|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..  +  +.+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~  157 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES--NKIDLK  157 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc--CCChHH
Confidence            67777788888888888777777777888888888  77888888888888888777777788888888854  6  788


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCC------CchhHHHHHcCCCC--HHHHHH
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN------NSCLMIAAYKGAGH--LSVIKT  152 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~------~t~l~~a~~~~~~~--~~~~~~  152 (237)
                      ++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..+      .||+|.|+..  ++  .+++++
T Consensus       158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~iv~~  235 (480)
T PHA03100        158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACY--NEITLEVVNY  235 (480)
T ss_pred             HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHh--CcCcHHHHHH
Confidence            8888888888887777778888888888888888888888888877777666      7788888876  66  888899


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       153 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      |+++|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..  ++...+++.
T Consensus       236 Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~--~iv~~Ll~~  305 (480)
T PHA03100        236 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNK--EIFKLLLNN  305 (480)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCH--HHHHHHHhc
Confidence            9998998888899999999999999999999999999999999999999999999987754  444444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.3e-39  Score=255.48  Aligned_cols=207  Identities=31%  Similarity=0.411  Sum_probs=170.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-----------------------Ccc
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-----------------------DLN   58 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-----------------------~~~   58 (237)
                      ++.|++.|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++|+                       +++
T Consensus        39 L~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n  118 (434)
T PHA02874         39 LIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVN  118 (434)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCC
Confidence            567888888888888888888888888888888888888888888888877654                       345


Q ss_pred             ccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421          59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI  138 (237)
Q Consensus        59 ~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~  138 (237)
                      .++..|.||||+|+..  |+.+++++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+|+
T Consensus       119 ~~~~~g~T~Lh~A~~~--~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        119 IKDAELKTFLHYAIKK--GDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHN  196 (434)
T ss_pred             CCCCCCccHHHHHHHC--CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            5677788888888854  88888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCCCHHHHHHHHhCCCC-------------------------------CCCCCCCCCCHHHHHHHcC-ChhHHHHH
Q psy8421         139 AAYKGAGHLSVIKTLVHAGAD-------------------------------VNHSTKTQSTPLRAACYDG-RLDIVKYL  186 (237)
Q Consensus       139 a~~~~~~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~t~l~~a~~~~-~~~~~~~L  186 (237)
                      |+..  ++.+++++|+++|.+                               ++.++..|.||||+|+..+ +.+++++|
T Consensus       197 A~~~--g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~L  274 (434)
T PHA02874        197 AAEY--GDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDIL  274 (434)
T ss_pred             HHHc--CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHH
Confidence            8877  888888888887754                               4555667778888888765 67899999


Q ss_pred             HHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         187 IEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       187 l~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      +++|++++.+|..|.||+++|+.++.
T Consensus       275 l~~gad~n~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        275 LYHKADISIKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHhCC
Confidence            99999999999999999999988763

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8e-39  Score=238.61  Aligned_cols=195  Identities=17%  Similarity=0.137  Sum_probs=113.3

Q ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHH
Q psy8421           8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH   87 (237)
Q Consensus         8 ~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~   87 (237)
                      .++.+++++|++.|++  ..|..|.||||+|+..|+.+++++|++.|++++..+  +.||||+|+..  |+.+++++|++
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~--g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL--EDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC--CCHHHHHHHHH
Confidence            3455666666665542  345556666666666666666666666665555442  45666666633  56666666666


Q ss_pred             cCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-CchhHHHHHcCCCCHHHHHHHHhCCCCCCCCC-C
Q psy8421          88 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-K  165 (237)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~  165 (237)
                      .|++++..+..|.||+|+|+..++.+++++|+++|++++..+..| .||+|+|+..  ++.+++++|++++.+.  .+ .
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~--g~~eivk~LL~~~~~~--~d~~  158 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML--NDVSIVSYFLSEIPST--FDLA  158 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHc--CCHHHHHHHHhcCCcc--cccc
Confidence            666666666666666666666666666666666666655555544 3566666655  5666666666554322  12 1


Q ss_pred             CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcH-HHHHHHhCc
Q psy8421         166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC-LMIAAYKGI  212 (237)
Q Consensus       166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~  212 (237)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..|.
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCC
Confidence            35566666666666666666666666666666666654 666665553

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.7e-39  Score=239.87  Aligned_cols=194  Identities=22%  Similarity=0.244  Sum_probs=178.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.++++.|++.|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  |+.++
T Consensus        34 Lh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~--g~~ei  109 (284)
T PHA02791         34 LYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS--GNMQT  109 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence            678999999999999999999887654  68999999999999999999999999999999999999999965  99999


Q ss_pred             HHHHHHcCCCCccCCCCC-CCHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      +++|++.|++++..+..| .||+|+|+..++.+++++|++++...  .+ ..|.||||+|+..  ++.+++++|+++|++
T Consensus       110 vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~--g~~eiv~lLL~~gAd  185 (284)
T PHA02791        110 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKN--GHVDMMILLLDYMTS  185 (284)
T ss_pred             HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHc--CCHHHHHHHHHCCCC
Confidence            999999999999888877 58999999999999999999986543  22 2579999999988  999999999999999


Q ss_pred             CCCCCCCCCCH-HHHHHHcCChhHHHHHHHcCCCcccccCCCCcHH
Q psy8421         160 VNHSTKTQSTP-LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL  204 (237)
Q Consensus       160 ~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  204 (237)
                      ++.++..|.|| ||+|+..|+.+++++|+++|++++.+|..| |++
T Consensus       186 ~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l  230 (284)
T PHA02791        186 TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL  230 (284)
T ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC
Confidence            99999999987 999999999999999999999999999954 666

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=258.10  Aligned_cols=223  Identities=28%  Similarity=0.336  Sum_probs=158.3

Q ss_pred             chhhccCC---cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-ChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC
Q psy8421           2 IAAYKGAG---HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG   77 (237)
Q Consensus         2 l~~a~~~g---~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~   77 (237)
                      ++.|+..|   +.+++++|++.|++++..+..|.||||+|+..| +.+++++|+++|++++.++..|.||||+|+....+
T Consensus        51 Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~  130 (471)
T PHA03095         51 LHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNI  130 (471)
T ss_pred             HHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcC
Confidence            45556655   777777777777777777777777777777777 47777777777777777777777777777743335


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC-------------------------------------CHHHHHHHHH
Q psy8421          78 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-------------------------------------RLDIVKYLIE  120 (237)
Q Consensus        78 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~-------------------------------------~~~~~~~L~~  120 (237)
                      +.+++++|++.|++++..+..|.||+|+|+..+                                     ..++++.|++
T Consensus       131 ~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~  210 (471)
T PHA03095        131 NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIR  210 (471)
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHH
Confidence            666777777777666666666666666655433                                     3344445555


Q ss_pred             cCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCC
Q psy8421         121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN  200 (237)
Q Consensus       121 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  200 (237)
                      .|++++.++..|.||||+|+..+.....+++.+++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       211 ~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        211 AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            55555555555666666666553223456777788889999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCccccccCcccccccc
Q psy8421         201 NSCLMIAAYKGIDVGRVGPGLFDRYP  226 (237)
Q Consensus       201 ~t~l~~a~~~~~~~~~~~~~~~~~~~  226 (237)
                      +||+|+|+..|..  .+...+++..|
T Consensus       291 ~tpl~~A~~~~~~--~~v~~LL~~~~  314 (471)
T PHA03095        291 NTPLSLMVRNNNG--RAVRAALAKNP  314 (471)
T ss_pred             CCHHHHHHHhCCH--HHHHHHHHhCC
Confidence            9999999988854  44444444443

>KOG0509|consensus

Probab=100.00  E-value=3.5e-39  Score=251.48  Aligned_cols=205  Identities=36%  Similarity=0.516  Sum_probs=194.1

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCH
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~   79 (237)
                      +..|++.|.++.++.+++. |.+++..|.+|.|+||+|+.+++.+++++|+++|+++|... ..+.||||+|+++  |+.
T Consensus        48 ~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~--G~~  125 (600)
T KOG0509|consen   48 IVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN--GHI  125 (600)
T ss_pred             hhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc--CcH
Confidence            3568999999999999998 99999999999999999999999999999999999999987 7789999999966  999


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421          80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      .++.+|+++|++++.+|.+|.+++|.|++.++.-.+-+|+.+|++++.+|.+|+||+++|+.+  +....+..|++.+..
T Consensus       126 ~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk--g~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  126 SVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK--GFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh--cccHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999998  666669999999999


Q ss_pred             CCCCC-CCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHh
Q psy8421         160 VNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK  210 (237)
Q Consensus       160 ~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  210 (237)
                      +...| ..|+||||+|+..|+..++.++++.|++.+..|.+|+||+++|...
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99887 8899999999999999999977788899999999999999999776

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-38  Score=257.07  Aligned_cols=217  Identities=34%  Similarity=0.463  Sum_probs=205.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHH-----HHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHH--Hh
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA-----ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA--YK   74 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~--~~   74 (237)
                      ++.|++.|+.+++++|++.|++++..+..+.||+|+     |+..|+.+++++|+++|++++..+..|.||||+|+  ..
T Consensus        39 L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~  118 (480)
T PHA03100         39 LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS  118 (480)
T ss_pred             hhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc
Confidence            678999999999999999999999999999999999     99999999999999999999999999999999999  65


Q ss_pred             CCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC--CHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHH
Q psy8421          75 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG--RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT  152 (237)
Q Consensus        75 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  152 (237)
                        |+.+++++|++.|++++..+..|.||+|.|+..+  +.+++++|+++|++++..+..|.||||+|+..  ++.+++++
T Consensus       119 --~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~--~~~~iv~~  194 (480)
T PHA03100        119 --NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK--GNIDVIKF  194 (480)
T ss_pred             --ChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh--CCHHHHHH
Confidence              9999999999999999999999999999999999  99999999999999999999999999999988  89999999


Q ss_pred             HHhCCCCCCCCCCCC------CCHHHHHHHcCC--hhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         153 LVHAGADVNHSTKTQ------STPLRAACYDGR--LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       153 l~~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      |+++|++++..+..+      .||+|.|+..++  .+++++|+++|++++.+|..|.||+|+|+..|..  ++...+++.
T Consensus       195 Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~--~iv~~Ll~~  272 (480)
T PHA03100        195 LLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP--EFVKYLLDL  272 (480)
T ss_pred             HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHc
Confidence            999999999999888      899999999999  9999999999999999999999999999998853  444455443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.3e-38  Score=249.72  Aligned_cols=207  Identities=29%  Similarity=0.358  Sum_probs=190.0

Q ss_pred             chhhccCCcHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~-~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      +..|+..|+++.++.|++.+ ..++..+..|.||||.|+..|+.++|++|+++|++++..+..|.||||+|+..  |+.+
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~--~~~~   82 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI--GAHD   82 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHH
Confidence            45788999999999999765 44777888899999999999999999999999999999999999999999965  8999


Q ss_pred             HHHHHHHcCC-----------------------CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhH
Q psy8421          81 VIKTLVHAGA-----------------------DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM  137 (237)
Q Consensus        81 ~~~~ll~~~~-----------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~  137 (237)
                      ++++|++.|+                       +++.++..|.||+|+|+..|+.+++++|+++|++++.++..|.||+|
T Consensus        83 iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh  162 (434)
T PHA02874         83 IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH  162 (434)
T ss_pred             HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            8888887664                       45667788999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         138 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       138 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      +|+..  ++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||+|+|+..+.
T Consensus       163 ~A~~~--~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        163 IAIKH--NFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             HHHHC--CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence            99988  99999999999999999999999999999999999999999999999998888888888888887654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-37  Score=250.85  Aligned_cols=207  Identities=29%  Similarity=0.378  Sum_probs=179.2

Q ss_pred             hhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---ChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC-CH
Q psy8421           4 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG-HL   79 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~-~~   79 (237)
                      .++..++++++++|++.|++++..+..|.||||+|+..+   +.+++++|+++|++++.++..|.||||+|+..  + ..
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~--~~~~   97 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN--ATTL   97 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCcH
Confidence            467889999999999999999999999999999999999   99999999999999999999999999999965  7 69


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHH--hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421          80 SVIKTLVHAGADVNHSTKTQSTPLRAAC--YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG  157 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~  157 (237)
                      +++++|++.|++++..+..|.||+|+|+  ..++.+++++|+++|++++..+..|.||+|+++.....+.+++++|+++|
T Consensus        98 ~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999  55688999999999999999999999999998877545678888888888


Q ss_pred             CCCCCCCCCCCCHHHHHHHc--CChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         158 ADVNHSTKTQSTPLRAACYD--GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       158 ~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      .+++..+..|.||||+++..  +..++++.|+++|++++.+|..|+||||+|+..|.
T Consensus       178 ~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~  234 (471)
T PHA03095        178 ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS  234 (471)
T ss_pred             CCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC
Confidence            87777777777888777654  55667777777777777666666677766666553

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.2e-38  Score=256.78  Aligned_cols=225  Identities=20%  Similarity=0.273  Sum_probs=138.4

Q ss_pred             hhhccCCc--HHHHHHHHHcCCCCCCCCCCCCcHHHHH-------------------------------------HHcCC
Q psy8421           3 AAYKGAGH--LSVIKTLVHAGADVNHSTKTQSTPLRAA-------------------------------------CYDGR   43 (237)
Q Consensus         3 ~~a~~~g~--~~~~~~L~~~~~~~~~~~~~~~t~l~~A-------------------------------------~~~g~   43 (237)
                      +.|++.|+  .+++++|++.|++++..+..|.||||+|                                     +..|+
T Consensus       217 H~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~  296 (764)
T PHA02716        217 HTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNID  296 (764)
T ss_pred             HHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCC
Confidence            44555553  3556666666666555555566665543                                     23345


Q ss_pred             hhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHh--------------c
Q psy8421          44 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY--------------D  109 (237)
Q Consensus        44 ~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~--------------~  109 (237)
                      .+++++|+++|++++.+|..|.||||+|+..+.++.+++++|++.|++++.++..|.||||+|+.              .
T Consensus       297 leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~  376 (764)
T PHA02716        297 ISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDND  376 (764)
T ss_pred             HHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccccccccc
Confidence            55555556566666555666666666554333345566666666666666666666666666543              2


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHH--cCCCCHHHHHHHHhCCC-----------------------------
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAY--KGAGHLSVIKTLVHAGA-----------------------------  158 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~~~l~~~~~-----------------------------  158 (237)
                      ++.+++++|+++|++++.++..|.||||.++.  ...+..+++++|++.++                             
T Consensus       377 ~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~  456 (764)
T PHA02716        377 IRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAK  456 (764)
T ss_pred             ChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHh
Confidence            45566666666666666666666666663211  11134555555554321                             


Q ss_pred             --------------------------------CCCCCCCCCCCHHHHHHHcCChh-----HHHHHHHcCCCcccccCCCC
Q psy8421         159 --------------------------------DVNHSTKTQSTPLRAACYDGRLD-----IVKYLIEHGADLNITNHYNN  201 (237)
Q Consensus       159 --------------------------------~~~~~~~~~~t~l~~a~~~~~~~-----~~~~Ll~~g~~~~~~~~~g~  201 (237)
                                                      +++..|..|+||||+|+..|+.+     ++++|++.|++++.+|+.|+
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~  536 (764)
T PHA02716        457 YNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGV  536 (764)
T ss_pred             cCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCC
Confidence                                            12334567889999999888764     45999999999999999999


Q ss_pred             cHHHHHHHhCcc---ccccCccccccccc
Q psy8421         202 SCLMIAAYKGID---VGRVGPGLFDRYPS  227 (237)
Q Consensus       202 t~l~~a~~~~~~---~~~~~~~~~~~~~~  227 (237)
                      ||||+|+.+|..   ..++++.+++.-|.
T Consensus       537 TPLh~A~~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        537 TPLMLTMRNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             CHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence            999999998864   23566667665554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=251.14  Aligned_cols=218  Identities=27%  Similarity=0.375  Sum_probs=188.8

Q ss_pred             hccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCC-CC
Q psy8421           5 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD-----GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA-GH   78 (237)
Q Consensus         5 a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~   78 (237)
                      +...++.+++++|+++|++++..+..|.||||.|+.+     ++.+++++|+++|++++.++..|.||||+|+..+. ++
T Consensus        45 ~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         45 QRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             hCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcCh
Confidence            4556789999999999999999999999999999865     67899999999999999999999999999996521 37


Q ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC---HHHHHHHHHcCCCCcccc-CCCCchhHHHHHc--CCCCHHHHHH
Q psy8421          79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR---LDIVKYLIEHGADLNITN-HYNNSCLMIAAYK--GAGHLSVIKT  152 (237)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~--~~~~~~~~~~  152 (237)
                      .+++++|+++|++++..+..|.||+|+|+..++   .+++++|++.|++++..+ ..|.||+|.++..  ..++.+++++
T Consensus       125 ~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~  204 (489)
T PHA02798        125 LEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKL  204 (489)
T ss_pred             HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHH
Confidence            899999999999999999999999999999987   999999999999998875 5688999988764  1246788888


Q ss_pred             HHhCCC---------------------------------------CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCc
Q psy8421         153 LVHAGA---------------------------------------DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL  193 (237)
Q Consensus       153 l~~~~~---------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  193 (237)
                      |+++|+                                       ++|.+|..|.||||+|+..++.+++++|+++|+++
T Consensus       205 Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi  284 (489)
T PHA02798        205 FVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI  284 (489)
T ss_pred             HHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            877765                                       34556778999999999999999999999999999


Q ss_pred             ccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         194 NITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       194 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +.+|..|+||+++|+..+..  .+...+++.
T Consensus       285 n~~d~~G~TpL~~A~~~~~~--~iv~~lL~~  313 (489)
T PHA02798        285 NIITELGNTCLFTAFENESK--FIFNSILNK  313 (489)
T ss_pred             cccCCCCCcHHHHHHHcCcH--HHHHHHHcc
Confidence            99999999999999998753  333444443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3e-37  Score=253.46  Aligned_cols=200  Identities=25%  Similarity=0.321  Sum_probs=180.5

Q ss_pred             cCCcHHHHHHHHHcC-CCCCCC-CCCCCcHHHHHHHc--CChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           7 GAGHLSVIKTLVHAG-ADVNHS-TKTQSTPLRAACYD--GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         7 ~~g~~~~~~~L~~~~-~~~~~~-~~~~~t~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      ..++.+++++|++.| ++++.. +..|.||||+|+..  ++.+++++|+++|++++.++..|.||||+|+..+..+.+++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            468999999999999 999988 88999999998754  57899999999999999999999999999996622256999


Q ss_pred             HHHHHcCCCCccCCCCCCCHHHHH-------------------------------------HhcCCHHHHHHHHHcCCCC
Q psy8421          83 KTLVHAGADVNHSTKTQSTPLRAA-------------------------------------CYDGRLDIVKYLIEHGADL  125 (237)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~l~~a-------------------------------------~~~~~~~~~~~L~~~~~~~  125 (237)
                      ++|++.|++++.++..|.||||.|                                     +..|+.++++.|+++|+++
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            999999999999999999999975                                     3457789999999999999


Q ss_pred             ccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--------------cCChhHHHHHHHcCC
Q psy8421         126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY--------------DGRLDIVKYLIEHGA  191 (237)
Q Consensus       126 ~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--------------~~~~~~~~~Ll~~g~  191 (237)
                      +.+|..|+||||+|+....++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|+++|+
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            999999999999987654368899999999999999999999999999865              368899999999999


Q ss_pred             CcccccCCCCcHHHH
Q psy8421         192 DLNITNHYNNSCLMI  206 (237)
Q Consensus       192 ~~~~~~~~g~t~l~~  206 (237)
                      +++.+|..|+||||.
T Consensus       391 DIn~kn~~G~TPLh~  405 (764)
T PHA02716        391 DITAVNCLGYTPLTS  405 (764)
T ss_pred             CCCCcCCCCCChHHH
Confidence            999999999999994

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-37  Score=247.81  Aligned_cols=218  Identities=23%  Similarity=0.311  Sum_probs=158.8

Q ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH------cCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhC-CCCHH
Q psy8421           8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY------DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG-AGHLS   80 (237)
Q Consensus         8 ~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~------~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~   80 (237)
                      .++.+++++|+++|++++..+ .+.||||.|+.      .++.+++++|+++|++++.++..|.||||.|+... .++.+
T Consensus        47 ~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~e  125 (494)
T PHA02989         47 DVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCD  125 (494)
T ss_pred             CCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHH
Confidence            346777777777777777655 45777777654      35667777777777777777777777777665431 24667


Q ss_pred             HHHHHHHcCCCC-ccCCCCCCCHHHHHHhc--CCHHHHHHHHHcCCCCcc-ccCCCCchhHHHHHcC--CCCHHHHHHHH
Q psy8421          81 VIKTLVHAGADV-NHSTKTQSTPLRAACYD--GRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKG--AGHLSVIKTLV  154 (237)
Q Consensus        81 ~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~a~~~~--~~~~~~~~~l~  154 (237)
                      ++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|.||+|.++...  .++.+++++|+
T Consensus       126 iv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll  205 (494)
T PHA02989        126 MLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLI  205 (494)
T ss_pred             HHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHH
Confidence            777777777777 66777777777776543  466777777777777766 4566777777766542  23666677766


Q ss_pred             hCCCCC--------------------------------------CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccc
Q psy8421         155 HAGADV--------------------------------------NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT  196 (237)
Q Consensus       155 ~~~~~~--------------------------------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  196 (237)
                      ++|+++                                      +.+|..|+||||+|+..++.+++++|+++|++++.+
T Consensus       206 ~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~  285 (494)
T PHA02989        206 KKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV  285 (494)
T ss_pred             hCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc
Confidence            666554                                      455667999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHhCccccccCcccccccccc
Q psy8421         197 NHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSA  228 (237)
Q Consensus       197 ~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~  228 (237)
                      |..|.||+|+|+..|..  .+...+++..|..
T Consensus       286 d~~G~TpL~~A~~~~~~--~iv~~LL~~~p~~  315 (494)
T PHA02989        286 SKDGDTVLTYAIKHGNI--DMLNRILQLKPGK  315 (494)
T ss_pred             CCCCCCHHHHHHHcCCH--HHHHHHHhcCCCh
Confidence            99999999999999854  5666666665543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=241.29  Aligned_cols=206  Identities=25%  Similarity=0.319  Sum_probs=191.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCcc-ccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-ITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|+..|+.+++++|++.|++++..+..+.||||.|+..|+.+++++|++.|...+ ..+..|.||||+|+..  ++.+
T Consensus        39 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--~~~~  116 (413)
T PHA02875         39 IKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL--KKLD  116 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh--CCHH
Confidence            578999999999999999999999888899999999999999999999999998764 3566799999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|++++..+..|.||+|+|+..|+.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|+++
T Consensus       117 iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~--g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        117 IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK--GDIAICKMLLDSGANI  194 (413)
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988  9999999999999999


Q ss_pred             CCCCCCCC-CHHHHHHHcCChhHHHHHHHcCCCcccc---cCCCCcHHHHHHHhC
Q psy8421         161 NHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNIT---NHYNNSCLMIAAYKG  211 (237)
Q Consensus       161 ~~~~~~~~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~~g~t~l~~a~~~~  211 (237)
                      +..+..|. ||+|+|+..++.+++++|+++|++++..   +..+.||+++++...
T Consensus       195 n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        195 DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhc
Confidence            99888875 8899999999999999999999999876   567899999887543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=240.21  Aligned_cols=217  Identities=18%  Similarity=0.252  Sum_probs=189.2

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--hhHHHHHHHcCCCccc-cCcCCCcHHHHHHHhCCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR--LDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGH   78 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~--~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~   78 (237)
                      |+.|++.|+.+++++|+++|++++..|..|.||||+|+..++  .+++++|+++|++++. .+..|.|||| |+..  ++
T Consensus        76 Lh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~--~~  152 (446)
T PHA02946         76 LHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTD--PS  152 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHC--CC
Confidence            678999999999999999999999999999999999998764  8999999999999995 6889999998 4533  88


Q ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC--CHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421          79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDG--RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      .+++++|++.|++++..+..|.||+|.|+..+  +.+++++|+++|++++.+|..|.||||+|+..+.++.+++++|+. 
T Consensus       153 ~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-  231 (446)
T PHA02946        153 ERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-  231 (446)
T ss_pred             hHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-
Confidence            99999999999999999999999999988755  468999999999999999999999999999874458899999985 


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCC-hhHHHHHHHcCCCcc--------------------ccc-CCCCcHHHHHHHhCccc
Q psy8421         157 GADVNHSTKTQSTPLRAACYDGR-LDIVKYLIEHGADLN--------------------ITN-HYNNSCLMIAAYKGIDV  214 (237)
Q Consensus       157 ~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~g~~~~--------------------~~~-~~g~t~l~~a~~~~~~~  214 (237)
                      |++++.+|..|.||||+|+..++ .+++++|+.+|++++                    ..+ ..|.||||+|+..|.. 
T Consensus       232 gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~-  310 (446)
T PHA02946        232 STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSI-  310 (446)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCH-
Confidence            89999999999999999999988 489999999887531                    111 3577999999999864 


Q ss_pred             cccCcccccc
Q psy8421         215 GRVGPGLFDR  224 (237)
Q Consensus       215 ~~~~~~~~~~  224 (237)
                       ++.+.|++.
T Consensus       311 -eivk~Ll~~  319 (446)
T PHA02946        311 -RCVKYLLDN  319 (446)
T ss_pred             -HHHHHHHHC
Confidence             555566554

>KOG4412|consensus

Probab=100.00  E-value=5.1e-37  Score=204.04  Aligned_cols=171  Identities=34%  Similarity=0.516  Sum_probs=161.5

Q ss_pred             chhhccCCcHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           2 IAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~-~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      +|-||+.|+.+++.+|+ +.+..++..|..|+||||+|+..|+.|+|+.|+.+ |+++|..+..|.||||||+  +.|..
T Consensus        42 LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa--gK~r~  119 (226)
T KOG4412|consen   42 LHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA--GKGRL  119 (226)
T ss_pred             eeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh--cCChh
Confidence            67899999999999999 66788999999999999999999999999999977 9999999999999999999  66999


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421          80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      ++.++|++.|+.++.+|..|.||||.|+.-|..+++++|+..|+.+|..|..|+||||.|...  ++.+....|++.|++
T Consensus       120 eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e--~~~d~a~lLV~~gAd  197 (226)
T KOG4412|consen  120 EIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE--GHPDVAVLLVRAGAD  197 (226)
T ss_pred             hHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhc--cCchHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999776  899999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHc
Q psy8421         160 VNHSTKTQSTPLRAACYD  177 (237)
Q Consensus       160 ~~~~~~~~~t~l~~a~~~  177 (237)
                      ++..|++| ||+..++..
T Consensus       198 ~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  198 TDREDKEG-TALRIACNE  214 (226)
T ss_pred             eeeccccC-chHHHHHHH
Confidence            99999988 998776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=249.70  Aligned_cols=208  Identities=30%  Similarity=0.405  Sum_probs=177.4

Q ss_pred             chhhccCCcH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-ChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           2 IAAYKGAGHL-SVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         2 l~~a~~~g~~-~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      ++.|++.|+. ++++.|++.|++++..+..|.||||+|+..| +.++++.|++.|++++..+..|.||||+|+.. .++.
T Consensus       277 Lh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~-~~~~  355 (682)
T PHA02876        277 LHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL-DRNK  355 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh-CCcH
Confidence            4567777775 5778888888888888888888888888888 47888888888888888888888888888753 2578


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421          80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      ++++.|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..+ +...+++.|+++|++
T Consensus       356 ~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~-~~~~~vk~Ll~~gad  434 (682)
T PHA02876        356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGT-NPYMSVKTLIDRGAN  434 (682)
T ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcC-CHHHHHHHHHhCCCC
Confidence            8888888999999999999999999999999999999999999999888888999999998762 446778999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcC-ChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         160 VNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       160 ~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      ++.+|..|+||||+|+..+ +.+++++|+++|++++.+|..|.||+++|+.++
T Consensus       435 in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        435 VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            9999999999999999876 689999999999999999999999999998765

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-35  Score=210.20  Aligned_cols=181  Identities=20%  Similarity=0.271  Sum_probs=163.4

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC-CCCCCHHHHHH
Q psy8421          29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAAC  107 (237)
Q Consensus        29 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~  107 (237)
                      ..+.|||++|+..|+.+.|+.|++.   .+..+..|.||||+|+..+.++.+++++|++.|++++..+ ..|.||+|+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            4578999999999999999999975   4567888999999999754568999999999999999887 47999999987


Q ss_pred             hc---CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHcCChhHH
Q psy8421         108 YD---GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA-ACYDGRLDIV  183 (237)
Q Consensus       108 ~~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~-a~~~~~~~~~  183 (237)
                      ..   ++.+++++|+++|++++.++..|.||+|.|+....++.+++++|+++|++++.+|..|.||||. ++..++.+++
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence            64   4799999999999999999999999999998654478999999999999999999999999996 5667899999


Q ss_pred             HHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         184 KYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       184 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      ++|+++|++++.+|..|+||+++|...+.
T Consensus       176 ~~Ll~~Gadi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        176 DFLTSLGIDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHhhhhh
Confidence            99999999999999999999999998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-34  Score=243.85  Aligned_cols=208  Identities=29%  Similarity=0.377  Sum_probs=130.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      +..+.+.|+.+++++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..  ++.++
T Consensus       149 l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~--~~~~i  226 (682)
T PHA02876        149 IKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS--KNIDT  226 (682)
T ss_pred             HHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHc--CCHHH
Confidence            3456678899999999999999998888899999999999999999999988888777666666666666633  44444


Q ss_pred             HHHHH-----------------------------HcCCCCccCCCCCCCHHHHHHhcCCH-HHHHHHHHcCCCCccccCC
Q psy8421          82 IKTLV-----------------------------HAGADVNHSTKTQSTPLRAACYDGRL-DIVKYLIEHGADLNITNHY  131 (237)
Q Consensus        82 ~~~ll-----------------------------~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~L~~~~~~~~~~~~~  131 (237)
                      ++.|+                             +.|.+++..+..|.||||+|+..++. ++++.|++.|++++..+..
T Consensus       227 vk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~  306 (682)
T PHA02876        227 IKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK  306 (682)
T ss_pred             HHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCC
Confidence            43333                             23333444444555555555555553 3555555555555555555


Q ss_pred             CCchhHHHHHcC---------------------------------CCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy8421         132 NNSCLMIAAYKG---------------------------------AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG  178 (237)
Q Consensus       132 ~~t~l~~a~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  178 (237)
                      |.||+|+|+..+                                 .+..++++.|++.|++++.+|..|.||||+|+..+
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~  386 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN  386 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcC
Confidence            555555555441                                 03444555555555555555555555555555555


Q ss_pred             ChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         179 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       179 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      +.+++++|+++|++++..+..|.||+|+|+..+
T Consensus       387 ~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~  419 (682)
T PHA02876        387 NVVIINTLLDYGADIEALSQKIGTALHFALCGT  419 (682)
T ss_pred             CHHHHHHHHHCCCCccccCCCCCchHHHHHHcC
Confidence            555555555555555555555555555555444

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.8e-34  Score=230.35  Aligned_cols=194  Identities=26%  Similarity=0.338  Sum_probs=169.7

Q ss_pred             HHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC---------
Q psy8421          11 LSVIKTLVHAG---ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH---------   78 (237)
Q Consensus        11 ~~~~~~L~~~~---~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---------   78 (237)
                      .++.+.+....   ...+..+..+.||||.|+..|+.++|++|+++|++++.++..|.||||+|+..  |+         
T Consensus        14 ~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~--g~~~~v~~Ll~   91 (477)
T PHA02878         14 ETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE--PNKLGMKEMIR   91 (477)
T ss_pred             HHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--ccHhHHHHHHH
Confidence            34555554421   11233445688999999999999999999999999999999999999999854  22         


Q ss_pred             -------------------------------------------------------HHHHHHHHHcCCCCccCCCC-CCCH
Q psy8421          79 -------------------------------------------------------LSVIKTLVHAGADVNHSTKT-QSTP  102 (237)
Q Consensus        79 -------------------------------------------------------~~~~~~ll~~~~~~~~~~~~-~~~~  102 (237)
                                                                             .+++++|++.|++++..+.. |.||
T Consensus        92 ~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tp  171 (477)
T PHA02878         92 SINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTA  171 (477)
T ss_pred             HHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCH
Confidence                                                                   23777888888899888888 9999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CChh
Q psy8421         103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD-GRLD  181 (237)
Q Consensus       103 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~-~~~~  181 (237)
                      ||+|+..|+.+++++|+++|++++..+..|.||+|.|+..  ++.+++++|+++|++++.++..|.||||+|+.. ++.+
T Consensus       172 Lh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~--~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~  249 (477)
T PHA02878        172 LHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH--YNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYD  249 (477)
T ss_pred             HHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHH
Confidence            9999999999999999999999999999999999999988  999999999999999999999999999999975 6899


Q ss_pred             HHHHHHHcCCCcccccC-CCCcHHHHHH
Q psy8421         182 IVKYLIEHGADLNITNH-YNNSCLMIAA  208 (237)
Q Consensus       182 ~~~~Ll~~g~~~~~~~~-~g~t~l~~a~  208 (237)
                      ++++|+++|++++.++. .|.||||+|+
T Consensus       250 iv~~Ll~~gadvn~~~~~~g~TpLh~A~  277 (477)
T PHA02878        250 ILKLLLEHGVDVNAKSYILGLTALHSSI  277 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHc
Confidence            99999999999999886 7999999994

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=231.54  Aligned_cols=208  Identities=18%  Similarity=0.180  Sum_probs=173.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCH----HHHH
Q psy8421          11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL----SVIK   83 (237)
Q Consensus        11 ~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~----~~~~   83 (237)
                      ++.+++|+..|...+..|.+|.||||+|+..   |+.+++++|+++|++++..+..|.||||+|+..  |+.    ++++
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~--g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS--RHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc--CChhHHHHHHH
Confidence            5788999998888888899999999997555   789999999999999999999999999999965  664    4667


Q ss_pred             HHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCC
Q psy8421          84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS  163 (237)
Q Consensus        84 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~  163 (237)
                      .|++.+...+..+  ...+++.|+..++.+++++|+++|++++.++..|.||||.++..+.++.+++++|+++|++++.+
T Consensus        90 ~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~  167 (661)
T PHA02917         90 ALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE  167 (661)
T ss_pred             HHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc
Confidence            7877644344333  23567888999999999999999999999999999999976544448999999999999999865


Q ss_pred             CC---CC-----------CCHHHHHHH-----------cCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccC
Q psy8421         164 TK---TQ-----------STPLRAACY-----------DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVG  218 (237)
Q Consensus       164 ~~---~~-----------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  218 (237)
                      +.   .|           .||||+|+.           .++.+++++|+++|++++.+|..|.||||+|+..|....+++
T Consensus       168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eiv  247 (661)
T PHA02917        168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIV  247 (661)
T ss_pred             ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHH
Confidence            43   23           599999986           458899999999999999999999999999999986533444


Q ss_pred             cccc
Q psy8421         219 PGLF  222 (237)
Q Consensus       219 ~~~~  222 (237)
                      +.|.
T Consensus       248 k~Li  251 (661)
T PHA02917        248 KLLM  251 (661)
T ss_pred             HHHH
Confidence            4443

>KOG0510|consensus

Probab=100.00  E-value=5.6e-34  Score=227.44  Aligned_cols=205  Identities=26%  Similarity=0.360  Sum_probs=105.7

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      +.|++....+.++.|++.|++++..+..+.+|+|+|+..|+.++++.|+++|++++..|+.+.||||+|+..  ++.+..
T Consensus        93 ~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~--~~~E~~  170 (929)
T KOG0510|consen   93 HAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARK--NKVEAK  170 (929)
T ss_pred             HHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhc--ChHHHH
Confidence            344445555555555555555555555555555555555555555555555555555555555555555533  455544


Q ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHH-----cCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421          83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-----HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG  157 (237)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~-----~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~  157 (237)
                      +.|++.|+++-..+..+..|+|.|+++|..++++.++.     .+..++..+..+.+|||.|+..  |++++++.+++.|
T Consensus       171 k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~--g~~e~lk~~L~n~  248 (929)
T KOG0510|consen  171 KELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG--GDIEMLKMCLQNG  248 (929)
T ss_pred             HHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc--CCHHHHHHHHhCc
Confidence            55555555555555555555555555555555555544     2334444444555555555544  5555555555443


Q ss_pred             CC---------------CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         158 AD---------------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       158 ~~---------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      ..               ++..|+.|.||||+|+..|.+++++.|+..|++++.+++++.||+|.|+.+|
T Consensus       249 ~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg  317 (929)
T KOG0510|consen  249 KKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYG  317 (929)
T ss_pred             cccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcc
Confidence            21               2333444555555555555555555555555555555555555555555554

>KOG0510|consensus

Probab=100.00  E-value=1.4e-33  Score=225.23  Aligned_cols=210  Identities=29%  Similarity=0.362  Sum_probs=143.2

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHh-------
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK-------   74 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~-------   74 (237)
                      +|.|+..|.++.++.|+++|++++..|+.+.||||.||..++.|..+.|++.|+++...+.+|.+|+|.|+++       
T Consensus       125 lh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mE  204 (929)
T KOG0510|consen  125 LHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECME  204 (929)
T ss_pred             hhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhh
Confidence            4667778888888888888888888888888888888888888877777788877777666666666666644       


Q ss_pred             -----------------------------CCCCHHHHHHHHHcCCC---------------CccCCCCCCCHHHHHHhcC
Q psy8421          75 -----------------------------GAGHLSVIKTLVHAGAD---------------VNHSTKTQSTPLRAACYDG  110 (237)
Q Consensus        75 -----------------------------~~~~~~~~~~ll~~~~~---------------~~~~~~~~~~~l~~a~~~~  110 (237)
                                                   ..|++++++.+++.|..               ++..|..|.||||+|++.|
T Consensus       205 i~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G  284 (929)
T KOG0510|consen  205 IFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQG  284 (929)
T ss_pred             hhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcC
Confidence                                         22455555555554332               2234555666666666666


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh-CC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         111 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       111 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      ..++++.|+..|++++.++.++.||+|.|+..  |+..+++.|++ .+ ..++..|..|.||||+|+++|+..+++.|++
T Consensus       285 ~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~y--g~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~  362 (929)
T KOG0510|consen  285 GPESVDNLLGFGASINSKNKDEESPLHFAAIY--GRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN  362 (929)
T ss_pred             ChhHHHHHHHcCCcccccCCCCCCchHHHHHc--ccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHh
Confidence            66666666666666666666666677776666  66666666666 43 2345566666777777777777777777777


Q ss_pred             cCCCcc---cccCCCCcHHHHHHHhCcc
Q psy8421         189 HGADLN---ITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       189 ~g~~~~---~~~~~g~t~l~~a~~~~~~  213 (237)
                      .|+...   ..|..|+||||+|+.+|..
T Consensus       363 ~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  363 KGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             cChhhhcccccccCCchhhhHHHHhccH
Confidence            776665   3466677777777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-32  Score=223.79  Aligned_cols=191  Identities=24%  Similarity=0.371  Sum_probs=165.0

Q ss_pred             hccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc--CChhHHHHHHHcCCCccccCcCCCcHHHHHHHhC----CCC
Q psy8421           5 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD--GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG----AGH   78 (237)
Q Consensus         5 a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~----~~~   78 (237)
                      ++...+.+++++|++.|++++.. ..|.||++.++..  ++.++|++|+++|++++.++ .+.||||.|+..+    .+.
T Consensus        10 ~~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~   87 (494)
T PHA02989         10 YSDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKI   87 (494)
T ss_pred             cCCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhH
Confidence            34568999999999999999988 5688998765554  36899999999999999876 5799999987532    245


Q ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCC-ccccCCCCchhHHHHHcCCCCHHHHHHHH
Q psy8421          79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLV  154 (237)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~~~l~  154 (237)
                      .+++++|+++|++++.++..|.||||.|+..   ++.+++++|+++|+++ +..+..|.||||+|+....++.+++++|+
T Consensus        88 ~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         88 KKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            7899999999999999999999999988765   6799999999999999 78999999999999866447899999999


Q ss_pred             hCCCCCCC-CCCCCCCHHHHHHHcC----ChhHHHHHHHcCCCccccc
Q psy8421         155 HAGADVNH-STKTQSTPLRAACYDG----RLDIVKYLIEHGADLNITN  197 (237)
Q Consensus       155 ~~~~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~~  197 (237)
                      ++|++++. .+..|.||||+|+..+    +.+++++|+++|++++..+
T Consensus       168 ~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        168 SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             HcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            99999998 6789999999997654    8899999999988776554

>KOG0509|consensus

Probab=100.00  E-value=4e-33  Score=217.81  Aligned_cols=178  Identities=32%  Similarity=0.412  Sum_probs=170.3

Q ss_pred             CcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC-CCCCCHHHHHHhc
Q psy8421          32 STPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYD  109 (237)
Q Consensus        32 ~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~  109 (237)
                      ...+..|++.|.++.|+.+++. |.+++..|..|.++||+|+.+  ++.+++++|+++|+++|..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN--Nrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN--NRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc--CcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            4568899999999999999988 999999999999999999988  99999999999999999988 5688999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      |+..++.+|+++|++++.+|..|.+|+|.|++.  ++..++-+++.++.+++.+|.+|+||||+|+..|....++.|++-
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~--~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f  200 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF--GHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF  200 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh--CchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence            999999999999999999999999999999988  999999999999999999999999999999999998879999999


Q ss_pred             CCCccccc-CCCCcHHHHHHHhCcc
Q psy8421         190 GADLNITN-HYNNSCLMIAAYKGID  213 (237)
Q Consensus       190 g~~~~~~~-~~g~t~l~~a~~~~~~  213 (237)
                      |+.+...| .+|.||||.|+..|..
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~  225 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNL  225 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCc
Confidence            99999999 8999999999999966

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=210.31  Aligned_cols=205  Identities=15%  Similarity=0.157  Sum_probs=178.4

Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCcc------ccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421          13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN------ITNHYNNSCLMIAAYKGAGHLSVIKTLV   86 (237)
Q Consensus        13 ~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~~~ll   86 (237)
                      ..++++.+|.+++..+.++     +|+..+..|++++|+.+|++++      ..+..++|+||+++..+.|+.+++++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            4578889999998777666     8999999999999999999988      6778899999999986679999999999


Q ss_pred             HcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc------cCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          87 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT------NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~------~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++|++++..  .+.||+|.|+..++.+++++|+++|++....      +..+.+++|.+...  +..+++++|+++|+++
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~--~~~eIve~LIs~GADI  214 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP--TVLEIYKLCIPYIEDI  214 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc--CHHHHHHHHHhCcCCc
Confidence            999999874  4479999999999999999999999743222      13467888999877  8999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc------ccccCcccccccc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID------VGRVGPGLFDRYP  226 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~------~~~~~~~~~~~~~  226 (237)
                      +.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|..      ..++...|++..+
T Consensus       215 N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        215 NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999842      2345555555433

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.2e-32  Score=194.29  Aligned_cols=172  Identities=20%  Similarity=0.309  Sum_probs=154.3

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChhHHHHHHHcCCCccccC-cCCCcHHHHHHHh-CCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG--RLDIVKYLIEHGADLNITN-HYNNSCLMIAAYK-GAG   77 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g--~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~-~~~   77 (237)
                      |+.|++.|+.++|+.|++.   .+..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+.. +.+
T Consensus        25 L~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~  101 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNV  101 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccc
Confidence            5789999999999999975   4567888999999999865  8999999999999999987 5899999998753 235


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCCHHHHHHh--cCCHHHHHHHHHcCCCCccccCCCCchhHHH-HHcCCCCHHHHHHHH
Q psy8421          78 HLSVIKTLVHAGADVNHSTKTQSTPLRAACY--DGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGAGHLSVIKTLV  154 (237)
Q Consensus        78 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a-~~~~~~~~~~~~~l~  154 (237)
                      +.+++++|+++|++++.++..|.||+|.|+.  .++.+++++|+++|++++.+|..|.||+|.+ +..  ++.+++++|+
T Consensus       102 ~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~--~~~~iv~~Ll  179 (209)
T PHA02859        102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH--SDKKIFDFLT  179 (209)
T ss_pred             cHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc--CCHHHHHHHH
Confidence            7999999999999999999999999999876  4689999999999999999999999999965 444  8899999999


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcC
Q psy8421         155 HAGADVNHSTKTQSTPLRAACYDG  178 (237)
Q Consensus       155 ~~~~~~~~~~~~~~t~l~~a~~~~  178 (237)
                      ++|++++.++..|.||+++|...+
T Consensus       180 ~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        180 SLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999999999999999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.1e-32  Score=218.99  Aligned_cols=185  Identities=24%  Similarity=0.352  Sum_probs=166.9

Q ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---ChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC---HHHH
Q psy8421           9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH---LSVI   82 (237)
Q Consensus         9 g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~   82 (237)
                      ++.+++++|++.|++++..+..|.||||+|+..+   +.+++++|+++|++++..+..|.||||+|+..  ++   .+++
T Consensus        87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~--~~~~~~~vv  164 (489)
T PHA02798         87 HMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQS--NHHIDIEII  164 (489)
T ss_pred             hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHc--CCcchHHHH
Confidence            6799999999999999999999999999999986   68999999999999999999999999999965  55   9999


Q ss_pred             HHHHHcCCCCccCC-CCCCCHHHHHHhc----CCHHHHHHHHHcCCCC--------------------------------
Q psy8421          83 KTLVHAGADVNHST-KTQSTPLRAACYD----GRLDIVKYLIEHGADL--------------------------------  125 (237)
Q Consensus        83 ~~ll~~~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~L~~~~~~~--------------------------------  125 (237)
                      ++|++.|++++..+ ..+.+|+|.++..    ++.+++++|+++|+++                                
T Consensus       165 ~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~  244 (489)
T PHA02798        165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDF  244 (489)
T ss_pred             HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHH
Confidence            99999999998774 5788999988764    4788888888877644                                


Q ss_pred             -------ccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCccccc
Q psy8421         126 -------NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN  197 (237)
Q Consensus       126 -------~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  197 (237)
                             +.++..|.||||+|+..  ++.+++++|+++|++++.++..|.||||.|+..++.++++.|++++++++...
T Consensus       245 l~~~~dvN~~d~~G~TPL~~A~~~--~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~  321 (489)
T PHA02798        245 IFSYIDINQVDELGFNPLYYSVSH--NNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTIS  321 (489)
T ss_pred             HHhcCCCCCcCcCCccHHHHHHHc--CcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHHH
Confidence                   34566799999999988  99999999999999999999999999999999999999999999999987543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.1e-32  Score=217.61  Aligned_cols=221  Identities=18%  Similarity=0.318  Sum_probs=181.6

Q ss_pred             ccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHH--HHHcCChhHHHHHHH-------------------------------
Q psy8421           6 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA--ACYDGRLDIVKYLIE-------------------------------   52 (237)
Q Consensus         6 ~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~--A~~~g~~~~v~~Ll~-------------------------------   52 (237)
                      ..+++.|++++|+++|++++..|..|.||||+  |...|+.|+|++|++                               
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVT  289 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcc
Confidence            46789999999999999999999999999995  556677999999999                               


Q ss_pred             -cCCCccc--------------------cCcCCCc---------------------HHHHHHHhC-CCCHHHHHHHHHcC
Q psy8421          53 -HGADLNI--------------------TNHYNNS---------------------CLMIAAYKG-AGHLSVIKTLVHAG   89 (237)
Q Consensus        53 -~~~~~~~--------------------~~~~~~~---------------------~l~~a~~~~-~~~~~~~~~ll~~~   89 (237)
                       +|+++..                    .+..|.+                     .|+.-...+ ..+.+++++|+++|
T Consensus       290 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G  369 (672)
T PHA02730        290 PYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG  369 (672)
T ss_pred             cCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC
Confidence             6777644                    3444544                     566666544 36799999999999


Q ss_pred             CCCccCCCCCCCHHHHHHhcCC----HHHHHHHHHcCC--CCccccCCCCchhHH---HHHcCC-------CCHHHHHHH
Q psy8421          90 ADVNHSTKTQSTPLRAACYDGR----LDIVKYLIEHGA--DLNITNHYNNSCLMI---AAYKGA-------GHLSVIKTL  153 (237)
Q Consensus        90 ~~~~~~~~~~~~~l~~a~~~~~----~~~~~~L~~~~~--~~~~~~~~~~t~l~~---a~~~~~-------~~~~~~~~l  153 (237)
                      ++++.. ..|.||||+|+..+.    .+++++|+++|+  +++.++..|.||||.   +.....       ...+++++|
T Consensus       370 AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~L  448 (672)
T PHA02730        370 ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDIL  448 (672)
T ss_pred             CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHH
Confidence            999985 789999999988775    899999999987  588889999999984   322210       023679999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccC-CCCcHHHHHHHhCccccccCccccccccc
Q psy8421         154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGIDVGRVGPGLFDRYPS  227 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~~~~~  227 (237)
                      +.+|++++.+|..|.||||+|+..++.+++++|+++|++++.++. .|.||+|+|+..+....++...+++.-|.
T Consensus       449 Is~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        449 SKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             HhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999997 59999999998543334555555555443

>PHA02795 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=206.82  Aligned_cols=189  Identities=20%  Similarity=0.188  Sum_probs=170.0

Q ss_pred             hhccCCcHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhC
Q psy8421           4 AYKGAGHLSVIKTLVHAGADVN------HSTKTQSTPLRAACY--DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG   75 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~~~------~~~~~~~t~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~   75 (237)
                      .|+..+..|++++|+++|++++      ..+.++.|+||.|+.  .|+.++|++|+++|++++..  .+.||+|.|+.. 
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~-  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK-  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc-
Confidence            4677899999999999999987      677889999999999  89999999999999999874  458999999955 


Q ss_pred             CCCHHHHHHHHHcCCCCccCC------CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHH
Q psy8421          76 AGHLSVIKTLVHAGADVNHST------KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV  149 (237)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  149 (237)
                       ++.+++++|+++|++.....      ..+.+++|.|...+..+++++|+++|++++.++..|.||||+|+..  ++.++
T Consensus       160 -~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~--g~~ei  236 (437)
T PHA02795        160 -KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYA--GYIDL  236 (437)
T ss_pred             -CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHc--CCHHH
Confidence             99999999999997543221      2367889999999999999999999999999999999999999988  99999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCC--------hhHHHHHHHcCCCcccccC
Q psy8421         150 IKTLVHAGADVNHSTKTQSTPLRAACYDGR--------LDIVKYLIEHGADLNITNH  198 (237)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~--------~~~~~~Ll~~g~~~~~~~~  198 (237)
                      +++|+++|++++.++..|.||||+|+..|+        .+++++|+++|++++....
T Consensus       237 VelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        237 VSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            999999999999999999999999999984        5899999999999887654

>KOG0508|consensus

Probab=100.00  E-value=2.5e-32  Score=206.36  Aligned_cols=213  Identities=38%  Similarity=0.628  Sum_probs=185.0

Q ss_pred             hhccCCcHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHcCChhHHHHHHH-cCCCccc--------cCcCCCcHHH
Q psy8421           4 AYKGAGHLSVIKTLVHAGAD-----VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNI--------TNHYNNSCLM   69 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~-----~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~-~~~~~~~--------~~~~~~~~l~   69 (237)
                      .|++-|.+..+..|+-...+     +-....+|.|||.+||++|+.++|++|++ .++++..        ....|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            45667777777777754321     22345678899999999999999999997 4555433        3456889988


Q ss_pred             HHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHH
Q psy8421          70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV  149 (237)
Q Consensus        70 ~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  149 (237)
                      .|+  ..|+.++++.|++.|+++|.....+.|||..||..|+++++++|+++|++++..++.|.|+|++|+..  |+.++
T Consensus        90 aAs--aAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk--Gh~~I  165 (615)
T KOG0508|consen   90 AAS--AAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK--GHVDI  165 (615)
T ss_pred             HHh--ccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc--CchHH
Confidence            888  77999999999999999999999999999999999999999999999999999999999999999998  99999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      +++|++.|+|+|.++..|+|+||.|+..|+.+++++|+++|+.+.. |..|.|||..|...|..  +++..+++
T Consensus       166 ~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~--~iVe~L~~  236 (615)
T KOG0508|consen  166 AQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHT--DIVERLLQ  236 (615)
T ss_pred             HHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcch--HHHHHHhc
Confidence            9999999999999999999999999999999999999999999975 55699999999999965  44455553

>PHA02792 ankyrin-like protein; Provisional

Probab=99.98  E-value=4.5e-31  Score=211.61  Aligned_cols=202  Identities=21%  Similarity=0.269  Sum_probs=160.2

Q ss_pred             ccCCcHHHHHHHHHcCCCCC------------------------------------CCCCCCCcHHHHHHHcC-------
Q psy8421           6 KGAGHLSVIKTLVHAGADVN------------------------------------HSTKTQSTPLRAACYDG-------   42 (237)
Q Consensus         6 ~~~g~~~~~~~L~~~~~~~~------------------------------------~~~~~~~t~l~~A~~~g-------   42 (237)
                      ...|+.|++++|++.|++++                                    ..|..|.||||+|+..+       
T Consensus       114 ~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~  193 (631)
T PHA02792        114 TSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYAT  193 (631)
T ss_pred             cCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccC
Confidence            34688899999988887632                                    33456888899888888       


Q ss_pred             ChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCC----------------------------------------------
Q psy8421          43 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA----------------------------------------------   76 (237)
Q Consensus        43 ~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~----------------------------------------------   76 (237)
                      +.|+++.|+++|++++..|..|.||||+|+.+..                                              
T Consensus       194 ~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~l  273 (631)
T PHA02792        194 SLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKL  273 (631)
T ss_pred             CHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHH
Confidence            7888999998888888888888899998875420                                              


Q ss_pred             ---------------------------------------------CCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC
Q psy8421          77 ---------------------------------------------GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR  111 (237)
Q Consensus        77 ---------------------------------------------~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  111 (237)
                                                                   -+.++++++++.|+....  .....+++.|+..++
T Consensus       274 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn  351 (631)
T PHA02792        274 LSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRD  351 (631)
T ss_pred             HhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCC
Confidence                                                         123444444444554321  123456778888889


Q ss_pred             HHHHHHHHHcCCCCccccCCC--CchhHHHHHcCCC-CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         112 LDIVKYLIEHGADLNITNHYN--NSCLMIAAYKGAG-HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       112 ~~~~~~L~~~~~~~~~~~~~~--~t~l~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      .+++++|+++|++++.++..|  .||+|.|...... ..+++++++++|++++.+|..|.||||+|+..++.+++++|++
T Consensus       352 ~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs  431 (631)
T PHA02792        352 PKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLID  431 (631)
T ss_pred             HHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHH
Confidence            999999999999999888664  6999987765211 1346888999999999999999999999999999999999999


Q ss_pred             cCCCcccccCCCCcHHHHHHH
Q psy8421         189 HGADLNITNHYNNSCLMIAAY  209 (237)
Q Consensus       189 ~g~~~~~~~~~g~t~l~~a~~  209 (237)
                      +|++++.+|..|+||+++|+.
T Consensus       432 ~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        432 NGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             CCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999986

>PHA02917 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.6e-30  Score=214.65  Aligned_cols=200  Identities=23%  Similarity=0.298  Sum_probs=167.2

Q ss_pred             ccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh----HHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           6 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD----IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         6 ~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      +..|+.+++++|++.|++++..+..|.||||+|+..|+.+    +++.|++.+...+..+.  .+++++|+  ..++.++
T Consensus        43 ~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~--~~~~~e~  118 (661)
T PHA02917         43 EHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKS--KNVDVDL  118 (661)
T ss_pred             hhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHh--hcCCHHH
Confidence            4458899999999999999999999999999999999854    55778776544444332  36677787  4489999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHH--hcCCHHHHHHHHHcCCCCccccC---CC-----------CchhHHHHHcC--
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAAC--YDGRLDIVKYLIEHGADLNITNH---YN-----------NSCLMIAAYKG--  143 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~L~~~~~~~~~~~~---~~-----------~t~l~~a~~~~--  143 (237)
                      +++|++.|++++.++..|.||||.++  ..++.+++++|+++|++++..+.   .|           .||||+|+...  
T Consensus       119 vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~  198 (661)
T PHA02917        119 IKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLY  198 (661)
T ss_pred             HHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccc
Confidence            99999999999999999999999653  57899999999999999976543   23           59999998621  


Q ss_pred             -------CCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh--hHHHHHHHcCCCcc----cccCCCCcHHHHHHHh
Q psy8421         144 -------AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL--DIVKYLIEHGADLN----ITNHYNNSCLMIAAYK  210 (237)
Q Consensus       144 -------~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~g~~~~----~~~~~g~t~l~~a~~~  210 (237)
                             .++.+++++|+++|++++.+|..|.||||+|+.+|+.  +++++|++ |++++    ..|..|.||+++|+..
T Consensus       199 ~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl  277 (661)
T PHA02917        199 SESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYL  277 (661)
T ss_pred             ccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHH
Confidence                   2578999999999999999999999999999999986  79999975 88775    5667788999999853

>KOG4177|consensus

Probab=99.97  E-value=7.9e-32  Score=226.19  Aligned_cols=208  Identities=34%  Similarity=0.470  Sum_probs=171.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC-CHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG-HLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~   80 (237)
                      ++.|++.|+.++++.++..|.+++.....|.||||.|+..++..+++.++++|++.+..+..|.||+|+|+..  + ..+
T Consensus       378 l~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~--g~~~~  455 (1143)
T KOG4177|consen  378 LHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK--GRYLQ  455 (1143)
T ss_pred             hhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc--ccHhh
Confidence            5678888888888888888888888888888888888888887777777777777777777777777777754  4 556


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHH---------------------------------HHHHHHcCCCCcc
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI---------------------------------VKYLIEHGADLNI  127 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~---------------------------------~~~L~~~~~~~~~  127 (237)
                      ....+++.|.+++.....|.||+|.|...|+.++                                 ++.++++|+.++.
T Consensus       456 ~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~  535 (1143)
T KOG4177|consen  456 IARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL  535 (1143)
T ss_pred             hhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh
Confidence            6666666666666666666666666666655444                                 4444556666777


Q ss_pred             ccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHH
Q psy8421         128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA  207 (237)
Q Consensus       128 ~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  207 (237)
                      ++..++||||.|+..  ++.++|++|+++|++++.+++.|+||||.|+..|+.+++++|+++|+++|..|.+|.||+++|
T Consensus       536 ~~~r~~TpLh~A~~~--g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHY--GNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             hcccccchHHHHHhc--CCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            888899999999988  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCcc
Q psy8421         208 AYKGID  213 (237)
Q Consensus       208 ~~~~~~  213 (237)
                      +.+|+.
T Consensus       614 ~~lg~~  619 (1143)
T KOG4177|consen  614 VRLGYL  619 (1143)
T ss_pred             HHhccc
Confidence            999976

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-29  Score=205.85  Aligned_cols=210  Identities=12%  Similarity=0.087  Sum_probs=170.9

Q ss_pred             HHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcC---ChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHH
Q psy8421          12 SVIKTLVHAGADVN-HSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH   87 (237)
Q Consensus        12 ~~~~~L~~~~~~~~-~~~~~~~t~l~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~   87 (237)
                      ..+++.++..++++ ..|..|.||||+|+..|   +.++|++|+++|++++.+|..|.||||+|+..+.++.+++++|++
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~  100 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS  100 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh
Confidence            45677778777877 78889999999999997   599999999999999999999999999999764458999999999


Q ss_pred             cCCCC--ccCCCCCCCHHHHHHh--cCCHHHHHHHHH-cCCCCcccc-----CCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421          88 AGADV--NHSTKTQSTPLRAACY--DGRLDIVKYLIE-HGADLNITN-----HYNNSCLMIAAYKGAGHLSVIKTLVHAG  157 (237)
Q Consensus        88 ~~~~~--~~~~~~~~~~l~~a~~--~~~~~~~~~L~~-~~~~~~~~~-----~~~~t~l~~a~~~~~~~~~~~~~l~~~~  157 (237)
                      .|+..  +..+..+.+|++.++.  .++.+++++|++ .+++++...     ..|.+|++++...  +..+++++|+++|
T Consensus       101 ~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--~~~eIvklLi~~g  178 (672)
T PHA02730        101 SYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPN--PRPEVLLWLLKSE  178 (672)
T ss_pred             cCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCC--CchHHHHHHHHcC
Confidence            97654  6666668899999988  889999999997 567776552     3789999999977  9999999999999


Q ss_pred             CCCCC-------CCCCC-CCHHHHH------HHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         158 ADVNH-------STKTQ-STPLRAA------CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       158 ~~~~~-------~~~~~-~t~l~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      ++++.       .+... .|.||++      ...+..+++++|+++|++++.+|..|.||||++........++.+.|++
T Consensus       179 ~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        179 CYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            99851       22223 3445533      4567899999999999999999999999999755443322466666665

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.97  E-value=2.5e-29  Score=214.22  Aligned_cols=194  Identities=23%  Similarity=0.282  Sum_probs=172.1

Q ss_pred             cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcC
Q psy8421          10 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG   89 (237)
Q Consensus        10 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~   89 (237)
                      +.++-+.+.+.+..  ..+..+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..  |+.+++++|+++|
T Consensus       506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~--g~~~~v~~Ll~~g  581 (823)
T PLN03192        506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK--GYEDCVLVLLKHA  581 (823)
T ss_pred             cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--ChHHHHHHHHhcC
Confidence            34444445444433  2334567899999999999999999999999999999999999999965  9999999999999


Q ss_pred             CCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCC
Q psy8421          90 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST  169 (237)
Q Consensus        90 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t  169 (237)
                      ++++.++..|.||+|.|+..|+.+++++|++.+...+.  ..+.+++|.|+..  ++.++++.|+++|++++.+|..|.|
T Consensus       582 adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~--g~~~~v~~Ll~~Gadin~~d~~G~T  657 (823)
T PLN03192        582 CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKR--NDLTAMKELLKQGLNVDSEDHQGAT  657 (823)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHh--CCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            99999999999999999999999999999988765543  4567899999988  9999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCcccccCCC-CcHHHHHHHhC
Q psy8421         170 PLRAACYDGRLDIVKYLIEHGADLNITNHYN-NSCLMIAAYKG  211 (237)
Q Consensus       170 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~a~~~~  211 (237)
                      |||+|+..|+.+++++|+++|++++..|..| .||.+++....
T Consensus       658 pLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        658 ALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999988 99999887643

>KOG0508|consensus

Probab=99.97  E-value=5.4e-30  Score=193.79  Aligned_cols=181  Identities=34%  Similarity=0.524  Sum_probs=165.9

Q ss_pred             hhhccCCcHHHHHHHHH-cCCCCC--------CCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVH-AGADVN--------HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY   73 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~-~~~~~~--------~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~   73 (237)
                      ..||++|+.++|++|++ .++++.        .-.-.|-+||..|+..||.++|+.|+++|+++|.......|||.-||+
T Consensus        47 ~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACf  126 (615)
T KOG0508|consen   47 LIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACF  126 (615)
T ss_pred             eeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHh
Confidence            46789999999999998 344443        233467899999999999999999999999999988888899999997


Q ss_pred             hCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421          74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus        74 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                      .  |+.+++++|+++|++++..+..|.|.|++|+..|+.+++++|++.|++++.++..|+|+||.++..  |+.+++++|
T Consensus       127 D--G~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEs--G~vdivq~L  202 (615)
T KOG0508|consen  127 D--GHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAES--GSVDIVQLL  202 (615)
T ss_pred             c--chhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhc--ccHHHHHHH
Confidence            6  999999999999999999999999999999999999999999999999999999999999999977  999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      +++|..++. |..|.|||..|+..|+.+++++|++
T Consensus       203 l~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  203 LKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            999987654 6669999999999999999999995

>KOG4177|consensus

Probab=99.96  E-value=3.2e-29  Score=210.68  Aligned_cols=211  Identities=32%  Similarity=0.381  Sum_probs=199.1

Q ss_pred             chhhccCC-cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAG-HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g-~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      +|.|++.| +.++...+++.|.+++...+.|.||||.|+..|+.++++.+++.++..+.....+.+++|++...  +...
T Consensus       444 lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~--~~v~  521 (1143)
T KOG4177|consen  444 LHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE--DTVK  521 (1143)
T ss_pred             hhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh--hhHH
Confidence            56788888 99999999999999999999999999999999999999999999988888889999999999954  8999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      .++.+++.|+..+.++..+.||||.|+.+|+..++++|+++|++++.++..|+||||.|+..  +..+++++|+++|+++
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~--G~~~i~~LLlk~GA~v  599 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ--GHNDIAELLLKHGASV  599 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHc--ChHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988  8999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC-----cccccCCCCcHHHHHHHhCccccc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-----LNITNHYNNSCLMIAAYKGIDVGR  216 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~a~~~~~~~~~  216 (237)
                      |..+.+|.|||++|+..|+.++++.|+..+..     +...+..|.+|..++-.+-.+...
T Consensus       600 na~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~~~~~  660 (1143)
T KOG4177|consen  600 NAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELDTDRQD  660 (1143)
T ss_pred             CcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHhhhhhhh
Confidence            99999999999999999999999999999999     888889999999998887655554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=8.1e-28  Score=205.06  Aligned_cols=170  Identities=21%  Similarity=0.336  Sum_probs=157.6

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..  |+.++
T Consensus       529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~--g~~~i  606 (823)
T PLN03192        529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA--KHHKI  606 (823)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh--CCHHH
Confidence            4568889999999999999999999999999999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.+...+  ...+.+++|.|+..|+.++++.|+++|++++.+|..|.||+|+|+..  ++.+++++|+++|++++
T Consensus       607 v~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~--g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        607 FRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE--DHVDMVRLLIMNGADVD  682 (823)
T ss_pred             HHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--CcHHHHHHHHHcCCCCC
Confidence            999998776543  34567899999999999999999999999999999999999999988  99999999999999999


Q ss_pred             CCCCCC-CCHHHHHHHc
Q psy8421         162 HSTKTQ-STPLRAACYD  177 (237)
Q Consensus       162 ~~~~~~-~t~l~~a~~~  177 (237)
                      ..+..| .||..++...
T Consensus       683 ~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        683 KANTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCCCHHHHHHHH
Confidence            999988 8998877554

>KOG0502|consensus

Probab=99.96  E-value=8.4e-29  Score=170.04  Aligned_cols=205  Identities=24%  Similarity=0.294  Sum_probs=184.6

Q ss_pred             hhccCCcHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           4 AYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~-~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      .+...|+.+++....+-..+ +...+..|.++++.|+-.|+.+.+...+.+|...|-.+..+++|+.+++..  .+.+..
T Consensus        68 ~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq--l~L~~~  145 (296)
T KOG0502|consen   68 VAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ--LHLDVV  145 (296)
T ss_pred             hhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH--HHHHHH
Confidence            45667888888888877765 556777899999999999999999999999999999999999999999965  555555


Q ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCC
Q psy8421          83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH  162 (237)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~  162 (237)
                      ..+.+  ..++..|+.|.|||.||+..|+.+++++|++.|++++.......++|.+|+..  +.+++++.|+..+.++|.
T Consensus       146 ~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~g--gytdiV~lLL~r~vdVNv  221 (296)
T KOG0502|consen  146 DLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRG--GYTDIVELLLTREVDVNV  221 (296)
T ss_pred             HHHhh--ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcC--ChHHHHHHHHhcCCCcce
Confidence            44444  45788999999999999999999999999999999999888888999999976  999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccc
Q psy8421         163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV  214 (237)
Q Consensus       163 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  214 (237)
                      .|.+|-|||-+|+..++.++++.|+..|++++..+..|.+++..|+..|+.+
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHH
Confidence            9999999999999999999999999999999999999999999999999763

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.96  E-value=4.4e-28  Score=205.49  Aligned_cols=206  Identities=20%  Similarity=0.205  Sum_probs=167.6

Q ss_pred             chhhccCCcHHHHHHHHHc--CCCCCCCCCCCCcHHH-HHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHA--GADVNHSTKTQSTPLR-AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH   78 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~--~~~~~~~~~~~~t~l~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~   78 (237)
                      +..|++.|+.+.++.+++.  +.++|..|..|.|||| .|+..++.++++.|+++|.    .+..|.||||.|+....+.
T Consensus        21 ~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~   96 (743)
T TIGR00870        21 FLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDA   96 (743)
T ss_pred             HHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHH
Confidence            3578999999999999998  8889999999999999 8999999999999999886    6778999999998521122


Q ss_pred             H-HHHHHHHHcCCC------Cc----cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc--------------CCCC
Q psy8421          79 L-SVIKTLVHAGAD------VN----HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--------------HYNN  133 (237)
Q Consensus        79 ~-~~~~~ll~~~~~------~~----~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~--------------~~~~  133 (237)
                      . .++..+...+.+      .+    .....|.||||.|+..++.++++.|+++|++++.+.              ..|.
T Consensus        97 v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~  176 (743)
T TIGR00870        97 VEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGE  176 (743)
T ss_pred             HHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccc
Confidence            2 233333333321      01    123468999999999999999999999999988643              2588


Q ss_pred             chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC---------ChhHHHHHHHcCCCc-------cccc
Q psy8421         134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG---------RLDIVKYLIEHGADL-------NITN  197 (237)
Q Consensus       134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~g~~~-------~~~~  197 (237)
                      +|+|.|+..  ++.+++++|+++|++++.+|..|+||||+|+..+         ...+.++++..+++.       ++.|
T Consensus       177 tpL~~Aa~~--~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N  254 (743)
T TIGR00870       177 SPLNAAACL--GSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILN  254 (743)
T ss_pred             cHHHHHHHh--CCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcC
Confidence            999999988  9999999999999999999999999999999986         234566666665543       6789


Q ss_pred             CCCCcHHHHHHHhCcc
Q psy8421         198 HYNNSCLMIAAYKGID  213 (237)
Q Consensus       198 ~~g~t~l~~a~~~~~~  213 (237)
                      ..|.||+|+|+..|..
T Consensus       255 ~~g~TPL~~A~~~g~~  270 (743)
T TIGR00870       255 HQGLTPLKLAAKEGRI  270 (743)
T ss_pred             CCCCCchhhhhhcCCc
Confidence            9999999999998855

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.95  E-value=2.9e-28  Score=167.42  Aligned_cols=196  Identities=25%  Similarity=0.329  Sum_probs=179.3

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      +.|+-+|+...+...+.+|..-|..+-.+.+|+.+++...+.+.+..+.+  ..+|..|+.|.|||.||+.+  |+++++
T Consensus       101 ~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~--n~VN~~De~GfTpLiWAaa~--G~i~vV  176 (296)
T KOG0502|consen  101 LVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN--NKVNACDEFGFTPLIWAAAK--GHIPVV  176 (296)
T ss_pred             hhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh--ccccCccccCchHhHHHHhc--CchHHH
Confidence            45666789999999999999999999999999999999988777666654  47889999999999999966  999999


Q ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCC
Q psy8421          83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH  162 (237)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~  162 (237)
                      ++|++.|++++...+...++|..|++.|..++++.|+.++.++|..|-+|-|||-+|+..  ++.+|++.|+..|++++.
T Consensus       177 ~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrg--nhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  177 QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRG--NHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecC--ChHHHHHHHHhcCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999966  999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHH
Q psy8421         163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM  205 (237)
Q Consensus       163 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  205 (237)
                      .+..|++++..|+..|+. +|+..+++.+....+|...+||+|
T Consensus       255 e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  255 EDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             ccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999987 888888888888888877777764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.5e-26  Score=182.53  Aligned_cols=204  Identities=16%  Similarity=0.152  Sum_probs=166.7

Q ss_pred             hhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH-cCChhHHHHHHHcCCCc-------------------------
Q psy8421           4 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY-DGRLDIVKYLIEHGADL-------------------------   57 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~-~g~~~~v~~Ll~~~~~~-------------------------   57 (237)
                      .|..+|++|++++|+++|++++..+..+.+|+++|+. .++.|++++|+++|+++                         
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            3567899999999999999999999999999999965 69999999999999762                         


Q ss_pred             -----------cccCcCCCcHHHHHHHhCCC-------CHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC--CHHHHHH
Q psy8421          58 -----------NITNHYNNSCLMIAAYKGAG-------HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG--RLDIVKY  117 (237)
Q Consensus        58 -----------~~~~~~~~~~l~~a~~~~~~-------~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~  117 (237)
                                 +..+..|.||||+|+..  +       +.++++.|+.+|++++..+..|.||||+|+...  +.++++.
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~--~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~  235 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIIT--RSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDA  235 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhh--CCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHH
Confidence                       23456699999999976  5       799999999999999999999999999998776  4555555


Q ss_pred             HHH-----------------------------------------------------------------------------
Q psy8421         118 LIE-----------------------------------------------------------------------------  120 (237)
Q Consensus       118 L~~-----------------------------------------------------------------------------  120 (237)
                      |++                                                                             
T Consensus       236 L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~  315 (631)
T PHA02792        236 LFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVS  315 (631)
T ss_pred             HHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHh
Confidence            543                                                                             


Q ss_pred             --------------cCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCC--CCHHHHHHHcCCh---h
Q psy8421         121 --------------HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--STPLRAACYDGRL---D  181 (237)
Q Consensus       121 --------------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~t~l~~a~~~~~~---~  181 (237)
                                    +|++..  .......++.|+..  ++.+++++|+++|++++.+|..|  .||||.|......   +
T Consensus       316 ~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~--gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~  391 (631)
T PHA02792        316 YHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDN--RDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLS  391 (631)
T ss_pred             cCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHc--CCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHH
Confidence                          332221  01133446667666  89999999999999999988775  5999988776654   3


Q ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         182 IVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       182 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      ++++++++|++++.+|..|+||||+|+..+..
T Consensus       392 IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~  423 (631)
T PHA02792        392 ILKLCKPYIDDINKIDKHGRSILYYCIESHSV  423 (631)
T ss_pred             HHHHHHhcCCccccccccCcchHHHHHHcCCH
Confidence            57888999999999999999999999987643

>KOG0507|consensus

Probab=99.94  E-value=2.7e-26  Score=182.58  Aligned_cols=205  Identities=28%  Similarity=0.346  Sum_probs=188.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      +|.|+-+|+.++.+.|++..+-++..+..|.+|||+|+..|+.|+++.++.++..+|..+..|.||||.|+.+  |+.++
T Consensus        53 lhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh--gh~dv  130 (854)
T KOG0507|consen   53 LHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH--GHLEV  130 (854)
T ss_pred             HHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh--cchHH
Confidence            6889999999999999999998888899999999999999999999999999988999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCC--------ccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL--------NITNHYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                      +.+|+++|+++-..+..+.+++..|++.|..++++.|++.....        ..++..+.+|+|.|+.+  ++.++++.|
T Consensus       131 v~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn--gh~~~~~~l  208 (854)
T KOG0507|consen  131 VFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN--GHVECMQAL  208 (854)
T ss_pred             HHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc--chHHHHHHH
Confidence            99999999999999999999999999999999999999864332        22445678999999988  999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      ++.|.++|..+..| |+||.|+.+|..+++++|++.|++..++|.+|.|+|++-....
T Consensus       209 l~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  209 LEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             HhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcc
Confidence            99999999887755 7999999999999999999999999999999999999887654

>KOG0505|consensus

Probab=99.94  E-value=3e-26  Score=176.05  Aligned_cols=203  Identities=30%  Similarity=0.410  Sum_probs=177.7

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      ..|+..|+.+-++.|+..|++++..+.+|.|++|-||.-.+.+||++|+++|++++..|..++||||.|+.+  |+..++
T Consensus        45 l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc--g~~~i~  122 (527)
T KOG0505|consen   45 LEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC--GYLNIV  122 (527)
T ss_pred             HhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc--ccHHHH
Confidence            468889999999999999999999999999999999999999999999999999999999999999999955  999999


Q ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHhc-------------C-C------------HHHHHHHHHcCCCCccccCCCCchh
Q psy8421          83 KTLVHAGADVNHSTKTQSTPLRAACYD-------------G-R------------LDIVKYLIEHGADLNITNHYNNSCL  136 (237)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~l~~a~~~-------------~-~------------~~~~~~L~~~~~~~~~~~~~~~t~l  136 (237)
                      ++++..|+++...+..|..|...+...             | .            .+-+...+..|...+..+..|.|.+
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL  202 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence            999999998877776665554333211             1 1            1122223346777777776799999


Q ss_pred             HHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy8421         137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY  209 (237)
Q Consensus       137 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  209 (237)
                      |.|...  |.++..++|++.|.+++.+|.+|+||||.|+..|..++.++|+++|++.++....|.||+.+|..
T Consensus       203 HvAaa~--Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  203 HVAAAN--GYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHhh--hHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999988  99999999999999999999999999999999999999999999999999999999999999876

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=151.33  Aligned_cols=137  Identities=15%  Similarity=0.175  Sum_probs=75.1

Q ss_pred             cCcCCCcHHHHHHHhCCCCH----HHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHH---HHHHHHHcCCCCcccc-CC
Q psy8421          60 TNHYNNSCLMIAAYKGAGHL----SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD---IVKYLIEHGADLNITN-HY  131 (237)
Q Consensus        60 ~~~~~~~~l~~a~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~L~~~~~~~~~~~-~~  131 (237)
                      .+..+.+++|.|+..  |+.    +++++|.+.+..++..+..|.||+|+|+..++.+   ++++|++.|++++.++ ..
T Consensus        16 ~~~~~~~~l~~a~~~--g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRT--GNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHc--CCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            334444444444422  443    2333334444444444444555555555444432   2455556666665555 35


Q ss_pred             CCchhHHHHHcCCCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCC
Q psy8421         132 NNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN  200 (237)
Q Consensus       132 ~~t~l~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  200 (237)
                      |.||||+|+..  ++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        94 g~TpLh~A~~~--g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         94 GNTLLHIAAST--KNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCcHHHHHHHh--CCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            66666666655  66666666663 566666666666666666666666666666666666666665554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=3.9e-24  Score=148.97  Aligned_cols=145  Identities=19%  Similarity=0.285  Sum_probs=127.9

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCh----hHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH---HHHHHHHcCCCC
Q psy8421          20 AGADVNHSTKTQSTPLRAACYDGRL----DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS---VIKTLVHAGADV   92 (237)
Q Consensus        20 ~~~~~~~~~~~~~t~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~---~~~~ll~~~~~~   92 (237)
                      ++++.+..+..+.+++|.||+.|+.    +++++|++.|..++..+..|.||||+|+..  ++.+   ++++|++.|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~--g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWY--DRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHh--CccCHHHHHHHHHHcCCCC
Confidence            3455666777888999999999998    666677788999999999999999999965  5544   589999999999


Q ss_pred             ccCC-CCCCCHHHHHHhcCCHHHHHHHHH-cCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCC
Q psy8421          93 NHST-KTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS  168 (237)
Q Consensus        93 ~~~~-~~~~~~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  168 (237)
                      +.++ ..|.||||+|+..++.+++++|++ .|++++..+..|.||+|+|+..  ++.+++++|+++|++++.++..|.
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~--~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM--RDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcccCCc
Confidence            9988 589999999999999999999995 7999999999999999999988  899999999999999998887764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=5.6e-24  Score=180.61  Aligned_cols=201  Identities=19%  Similarity=0.193  Sum_probs=155.6

Q ss_pred             ch-hhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH----HHHHHcCCC------cc----ccCcCCCc
Q psy8421           2 IA-AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV----KYLIEHGAD------LN----ITNHYNNS   66 (237)
Q Consensus         2 l~-~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v----~~Ll~~~~~------~~----~~~~~~~~   66 (237)
                      |+ .|+.+++.++++.|++.|.    .+..|.||||.|+.. ..+.+    ..+.+.+.+      .+    .....|.|
T Consensus        56 Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~T  130 (743)
T TIGR00870        56 LFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGIT  130 (743)
T ss_pred             HHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCc
Confidence            45 8999999999999999887    567899999999973 33333    333333322      11    12346999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHcCCCCccCC--------------CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCC
Q psy8421          67 CLMIAAYKGAGHLSVIKTLVHAGADVNHST--------------KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN  132 (237)
Q Consensus        67 ~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~  132 (237)
                      |||+|+.+  ++.+++++|+++|++++.++              ..|.+|+|.|+..++.++++.|+++|++++..|..|
T Consensus       131 pLhlAa~~--~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g  208 (743)
T TIGR00870       131 ALHLAAHR--QNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLG  208 (743)
T ss_pred             HHHHHHHh--CCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhh
Confidence            99999965  99999999999999988543              258899999999999999999999999999999999


Q ss_pred             CchhHHHHHcCCC-------CHHHHHHHHhCCCC---C----CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccC
Q psy8421         133 NSCLMIAAYKGAG-------HLSVIKTLVHAGAD---V----NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH  198 (237)
Q Consensus       133 ~t~l~~a~~~~~~-------~~~~~~~l~~~~~~---~----~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  198 (237)
                      +||+|+|+.....       ...+.+++++.+..   .    +..|..|.||||+|+..|+.+++++|++.+.+......
T Consensus       209 ~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a  288 (743)
T TIGR00870       209 NTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVA  288 (743)
T ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeec
Confidence            9999999977211       22355566655443   3    56788999999999999999999999997666555555


Q ss_pred             CCCcHHHHHHH
Q psy8421         199 YNNSCLMIAAY  209 (237)
Q Consensus       199 ~g~t~l~~a~~  209 (237)
                      +.+.|.+.+..
T Consensus       289 ~~~~~~~~~~~  299 (743)
T TIGR00870       289 WPNGQQLLSLY  299 (743)
T ss_pred             cCcchHhHhhh
Confidence            66666665554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.91  E-value=4.7e-24  Score=169.92  Aligned_cols=206  Identities=26%  Similarity=0.336  Sum_probs=183.8

Q ss_pred             hhhccCCcHHHHHHHHHcCC-------------CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGA-------------DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM   69 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~-------------~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~   69 (237)
                      ..|++.|+.+.+..+++...             +.+..|.+|.|.||.|+.+|+.+++++|+++.+-++..+..|.+|||
T Consensus         8 ~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plh   87 (854)
T KOG0507|consen    8 IDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLH   87 (854)
T ss_pred             HHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEE
Confidence            46899999999999997521             23456778999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHH
Q psy8421          70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV  149 (237)
Q Consensus        70 ~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  149 (237)
                      +|+..  |+.+++++++.++..++.....|.+|+|.|+..++.+++++|+.+|.++-.++..+.|++..|++.  |..++
T Consensus        88 laaw~--g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf--gr~~V  163 (854)
T KOG0507|consen   88 LAAWN--GNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF--GRAEV  163 (854)
T ss_pred             ehhhc--CcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh--hhhHH
Confidence            99966  999999999999988899999999999999999999999999999999999999999999999987  99999


Q ss_pred             HHHHHhCCCCC--------CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         150 IKTLVHAGADV--------NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       150 ~~~l~~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      ++.|++...+.        ..++-.+-+|+|.|+++|+.++++.|++.|.++|...+ .-|++|.|+..|..
T Consensus       164 vq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~-~gtalheaalcgk~  234 (854)
T KOG0507|consen  164 VQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTE-DGTALHEAALCGKA  234 (854)
T ss_pred             HHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccc-cchhhhhHhhcCcc
Confidence            99998764332        23445677999999999999999999999999998766 45999999998865

>KOG0514|consensus

Probab=99.90  E-value=2.2e-23  Score=153.48  Aligned_cols=162  Identities=31%  Similarity=0.439  Sum_probs=94.5

Q ss_pred             CCCCCCCCCcHHHHHHHcCChhHHHHHHHcC-CCccccCcCCCcHHHHHHHhC---CCCHHHHHHHHHcCCCCccCC-CC
Q psy8421          24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKG---AGHLSVIKTLVHAGADVNHST-KT   98 (237)
Q Consensus        24 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~---~~~~~~~~~ll~~~~~~~~~~-~~   98 (237)
                      +|..|.+|+|+||||+.++++++|+.|++.| .+++.++.-|+||+++++.-.   ..+.+++..|+..| ++|.+. ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            3456667777777777777777777777665 566666777777777666431   12344555555544 333332 23


Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHc
Q psy8421          99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYD  177 (237)
Q Consensus        99 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~  177 (237)
                      |.|+|++|++.|+.++++.|+..|+++|..|..|.|+|++|+..  |+.+++++|+.. +++....|..|.|+|.+|...
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EH--GhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEH--GHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhh--ChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            55666666666666666666666666666666666666666655  566666655543 355555555566666666655


Q ss_pred             CChhHHHHHHH
Q psy8421         178 GRLDIVKYLIE  188 (237)
Q Consensus       178 ~~~~~~~~Ll~  188 (237)
                      |+.++.-+|..
T Consensus       418 gh~eIa~mlYa  428 (452)
T KOG0514|consen  418 GHREIAVMLYA  428 (452)
T ss_pred             CchHHHHHHHH
Confidence            55555555543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2e-22  Score=150.80  Aligned_cols=154  Identities=22%  Similarity=0.221  Sum_probs=128.4

Q ss_pred             CCCCCCCc-HHHHHHHcCChhHHHHHHHcCCCccccC----cCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccC-CCCC
Q psy8421          26 HSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITN----HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS-TKTQ   99 (237)
Q Consensus        26 ~~~~~~~t-~l~~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~-~~~~   99 (237)
                      ..|..+.| +|+.|++.|+.+++++|+++|++++.++    ..|.||||+|+..  ++.+++++|+++|++++.. +..|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~--~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC--DNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCcCcccCCCC
Confidence            45555655 6778888899999999999999999863    5899999999955  9999999999999999986 4579


Q ss_pred             CCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q psy8421         100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR  179 (237)
Q Consensus       100 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  179 (237)
                      .||+|.|+..++.+++++|+++|++++.++..|.||+|+|+..  ++.+++..+..  .   ..+..+.+|.+++   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~--~~~~~~~~~~~--~---~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI--CNNFLAFMICD--N---EISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh--CChhHHHHhcC--C---cccccccChhhhh---cc
Confidence            9999999999999999999999999999999999999999987  66666655542  2   2455667787765   36


Q ss_pred             hhHHHHHHHcCC
Q psy8421         180 LDIVKYLIEHGA  191 (237)
Q Consensus       180 ~~~~~~Ll~~g~  191 (237)
                      .++++.|+.+++
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            789999998877

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=2e-22  Score=141.01  Aligned_cols=128  Identities=26%  Similarity=0.334  Sum_probs=75.0

Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHHHH------cCCCccccCcCCCcHHHHHHHhCCCC----HHHHHHHHHcCCCCccC
Q psy8421          26 HSTKTQSTPLRAACYDGRLDIVKYLIE------HGADLNITNHYNNSCLMIAAYKGAGH----LSVIKTLVHAGADVNHS   95 (237)
Q Consensus        26 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~~~~~l~~a~~~~~~~----~~~~~~ll~~~~~~~~~   95 (237)
                      ..+..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..  ++    .+++++|++.|++++.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~--g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK--HEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCC
Confidence            455667777777777777777777643      2455666666667777776643  44    35555555555555555


Q ss_pred             CC-CCCCHHHHHHhcCCHHHHHHHHH-cCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421          96 TK-TQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG  157 (237)
Q Consensus        96 ~~-~~~~~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~  157 (237)
                      +. .|.||||+|+..++.+++++|++ .|++++..+..|.||+++|+..  ++.+++++|.+++
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~--~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN--EDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC--CCHHHHHHHHHHH
Confidence            43 55555555555555555555554 3555555555555555555544  5555555555443

>KOG0514|consensus

Probab=99.90  E-value=2.2e-23  Score=153.38  Aligned_cols=154  Identities=28%  Similarity=0.432  Sum_probs=139.7

Q ss_pred             ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcC-CCCccCCCCCCCHHHHHHhc-----CCHHHHHHHHHcCCCCccc-c
Q psy8421          57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYD-----GRLDIVKYLIEHGADLNIT-N  129 (237)
Q Consensus        57 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~L~~~~~~~~~~-~  129 (237)
                      +|..|.+|+|+|||++.+  .++++++.|++.| ++++..+..|+||+++++..     .+.+++..|+..| ++|.+ .
T Consensus       261 VNlaDsNGNTALHYsVSH--aNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSH--ANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             hhhhcCCCCeeeeeeecc--cchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            577899999999999966  9999999999977 78999999999999998753     4678899999875 56655 4


Q ss_pred             CCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc-CCCcccccCCCCcHHHHHH
Q psy8421         130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAA  208 (237)
Q Consensus       130 ~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~  208 (237)
                      .-|.|+|++|+..  |+.++++.|+.-|+|+|.+|.+|.|+|+.|+.+|+.+++++|+.. ++|+...|..|-|+|.+|.
T Consensus       338 Q~gQTALMLAVSH--Gr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  338 QHGQTALMLAVSH--GRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hhcchhhhhhhhc--CcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence            6799999999988  999999999999999999999999999999999999999999987 8999999999999999999


Q ss_pred             HhCcccc
Q psy8421         209 YKGIDVG  215 (237)
Q Consensus       209 ~~~~~~~  215 (237)
                      ..|+...
T Consensus       416 eagh~eI  422 (452)
T KOG0514|consen  416 EAGHREI  422 (452)
T ss_pred             hcCchHH
Confidence            9997644

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.7e-22  Score=151.17  Aligned_cols=146  Identities=22%  Similarity=0.250  Sum_probs=126.1

Q ss_pred             CchhhccCCcHHHHHHHHHcCCCCCCC----CCCCCcHHHHHHHcCChhHHHHHHHcCCCcccc-CcCCCcHHHHHHHhC
Q psy8421           1 MIAAYKGAGHLSVIKTLVHAGADVNHS----TKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT-NHYNNSCLMIAAYKG   75 (237)
Q Consensus         1 ~l~~a~~~g~~~~~~~L~~~~~~~~~~----~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~a~~~~   75 (237)
                      +++.|++.|+.+++++|++.|++++..    +..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+.. 
T Consensus        36 lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~-  114 (300)
T PHA02884         36 ILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLH-  114 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc-
Confidence            367899999999999999999999986    458999999999999999999999999999986 46799999999965 


Q ss_pred             CCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh
Q psy8421          76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH  155 (237)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~  155 (237)
                       ++.+++++|++.|++++.++..|.||+|.|+..++.+++..+...  .   .+..+.+|.++.     ++.++++.|+.
T Consensus       115 -~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~-----~n~ei~~~Lis  183 (300)
T PHA02884        115 -GCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKIL-----INFDILKILVS  183 (300)
T ss_pred             -CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhh-----ccHHHHHHHHH
Confidence             999999999999999999999999999999999988877555432  2   344566777754     45788899888


Q ss_pred             CCC
Q psy8421         156 AGA  158 (237)
Q Consensus       156 ~~~  158 (237)
                      +++
T Consensus       184 h~v  186 (300)
T PHA02884        184 HFI  186 (300)
T ss_pred             HHH
Confidence            876

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=3e-22  Score=140.15  Aligned_cols=130  Identities=21%  Similarity=0.261  Sum_probs=107.8

Q ss_pred             ccCcCCCcHHHHHHHhCCCCHHHHHHHHH------cCCCCccCCCCCCCHHHHHHhcCC----HHHHHHHHHcCCCCccc
Q psy8421          59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVH------AGADVNHSTKTQSTPLRAACYDGR----LDIVKYLIEHGADLNIT  128 (237)
Q Consensus        59 ~~~~~~~~~l~~a~~~~~~~~~~~~~ll~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~L~~~~~~~~~~  128 (237)
                      .++..|.||||+|+..  |+.++++.|+.      .|++++.++..|.||||+|+..++    .+++++|++.|++++.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~--g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARC--GCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHc--CCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            4567788999999955  88999888754      256778888888999999998888    47888888888888887


Q ss_pred             cC-CCCchhHHHHHcCCCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         129 NH-YNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       129 ~~-~~~t~l~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      +. .|.||||+|+..  ++.+++++|++ .|++++.++..|.||||+|+..++.+++++|++.++.
T Consensus        94 ~~~~g~TpLh~A~~~--~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 EMLEGDTALHLAAHR--RDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CcCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            74 788999999877  88889998887 5888888888899999999999888999888877554

>KOG0512|consensus

Probab=99.88  E-value=6.8e-22  Score=131.30  Aligned_cols=143  Identities=26%  Similarity=0.311  Sum_probs=118.8

Q ss_pred             HHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCH
Q psy8421          34 PLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  112 (237)
Q Consensus        34 ~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  112 (237)
                      .+.+|+..+....|+.|++..+ .+|.+|..|+||||-|+++  |+.+|++.|+.+|++.+.+...|+||||.||..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn--~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN--GHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc--CchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            4678888888888888886544 5788899999999999987  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCC
Q psy8421         113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGR  179 (237)
Q Consensus       113 ~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~  179 (237)
                      +++-+|+++|++++.......||||.++..+ +....+++|+. .++++-.++..+.||+.+|-+.+-
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~r-n~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNR-NSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhccc-chHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            9999999999999988888889999998764 44556666654 567777788888999998877653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5e-22  Score=137.17  Aligned_cols=98  Identities=21%  Similarity=0.316  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHhcCCH---HHHHHHHHcCCCCcccc-CCCCchhHHHHHcCCCCHHHHHHHHh-CCCCCCCCCCCCCC
Q psy8421          95 STKTQSTPLRAACYDGRL---DIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQST  169 (237)
Q Consensus        95 ~~~~~~~~l~~a~~~~~~---~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t  169 (237)
                      .+..|.||||+|+..++.   +++++|++.|++++.++ ..|.||||+|+..  ++.+++++|+. .|++++.++..|.|
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~--~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT--QNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHh--CCHHHHHHHHhCCCCCCccccCCCCC
Confidence            345566666666666654   34666677777776665 3677777777766  67777777776 36777777777777


Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCcc
Q psy8421         170 PLRAACYDGRLDIVKYLIEHGADLN  194 (237)
Q Consensus       170 ~l~~a~~~~~~~~~~~Ll~~g~~~~  194 (237)
                      |||+|+..|+.+++++|+++|++.+
T Consensus       129 pL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        129 PYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7777777777777777777777654

>KOG4369|consensus

Probab=99.88  E-value=9.6e-23  Score=168.44  Aligned_cols=207  Identities=27%  Similarity=0.429  Sum_probs=191.7

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccc-cCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |-.||..|+.|++..|+..|+++..+|+.|.+||..|+-.||..+|+.|+++.+++.. .|..+.|+|.+||  +.|..+
T Consensus       761 LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac--sggr~~  838 (2131)
T KOG4369|consen  761 LTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC--SGGRTR  838 (2131)
T ss_pred             ccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec--CCCcch
Confidence            3568999999999999999999999999999999999999999999999999999886 5677899999999  669999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc--cCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT--NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~--~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      ++++|+..|+.-..++-.-.||+..|...|..+++..|+.+|..++.+  ...|..||..|.+.  ++......|++.|.
T Consensus       839 vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmn--gh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  839 VVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMN--GHQAATLSLLQPGS  916 (2131)
T ss_pred             HHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhc--cccHHHHHHhcccc
Confidence            999999999988888888899999999999999999999999888876  46789999999999  99999999999999


Q ss_pred             CCCCC-CCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         159 DVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       159 ~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      ++|.. .-+.+|+|-+|+..|..+++.+||...+++..+.+.|.|||+-++..|+
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCc
Confidence            99854 4467899999999999999999999999999999999999999998887

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=134.24  Aligned_cols=132  Identities=20%  Similarity=0.319  Sum_probs=110.3

Q ss_pred             CCCCCCCCCcHHHHHHHcCChhHHHHHHHcC--CC-----ccccCcCCCcHHHHHHHhCCCCH---HHHHHHHHcCCCCc
Q psy8421          24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHG--AD-----LNITNHYNNSCLMIAAYKGAGHL---SVIKTLVHAGADVN   93 (237)
Q Consensus        24 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~--~~-----~~~~~~~~~~~l~~a~~~~~~~~---~~~~~ll~~~~~~~   93 (237)
                      ++..|..|.||||+|+..|+.  ++++...+  .+     +...+..|.||||+|+..  ++.   +++++|++.|++++
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~--~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP--DKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc--CchhHHHHHHHHHHcCCCcc
Confidence            345677899999999999984  33333222  12     334688899999999954  665   56889999999999


Q ss_pred             cCC-CCCCCHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          94 HST-KTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        94 ~~~-~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      .++ ..|.||||+|+..++.+++++|++. |++++..+..|.||+|+|+..  ++.+++++|+++|++.+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~--~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER--HDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCC
Confidence            988 4899999999999999999999984 899999999999999999988  99999999999998754

>KOG0505|consensus

Probab=99.87  E-value=1.9e-21  Score=149.84  Aligned_cols=178  Identities=30%  Similarity=0.399  Sum_probs=151.3

Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHH
Q psy8421          34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD  113 (237)
Q Consensus        34 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  113 (237)
                      .+.-|+..|..+-+..|+..|..++..+.+|.|+||-++.-  .+.+|+++++++|+.++..+..++||+|.|+..|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id--~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID--DNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc--ccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            46788899999999999999999999999999999999965  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCccccCCCCchhHHHHHc------------CCCCHHH------------HHHHHhCCCCCCCCCCCCCC
Q psy8421         114 IVKYLIEHGADLNITNHYNNSCLMIAAYK------------GAGHLSV------------IKTLVHAGADVNHSTKTQST  169 (237)
Q Consensus       114 ~~~~L~~~~~~~~~~~~~~~t~l~~a~~~------------~~~~~~~------------~~~l~~~~~~~~~~~~~~~t  169 (237)
                      ++++|+++|+++...+..|..|...+...            ..-.++.            +.-.+..|...+.++..|.|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            99999999998877766666665443311            0011111            12223357777888878999


Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         170 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       170 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      .||+|+..|..++.++|+++|.+++++|..|+||||.|+..|..
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~  244 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQE  244 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhH
Confidence            99999999999999999999999999999999999999998854

>KOG0512|consensus

Probab=99.86  E-value=1.2e-20  Score=125.34  Aligned_cols=143  Identities=29%  Similarity=0.364  Sum_probs=122.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHcCC-CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCC
Q psy8421          68 LMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH  146 (237)
Q Consensus        68 l~~a~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (237)
                      +.+|+-  .+....|+.|++..+ -++.+|..++||||.|+.+|+.++++.|+..|++.+.+...|+||||-||..  ++
T Consensus        67 ~lwaae--~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW--nN  142 (228)
T KOG0512|consen   67 LLWAAE--KNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW--NN  142 (228)
T ss_pred             HHHHHh--hccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc--cc
Confidence            566773  388888888888654 4788999999999999999999999999999999999999999999999977  99


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh-hHHHHHH-HcCCCcccccCCCCcHHHHHHHhCccc
Q psy8421         147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL-DIVKYLI-EHGADLNITNHYNNSCLMIAAYKGIDV  214 (237)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~  214 (237)
                      .+++.+|+++|+|+|.......||||+|+...+. ..+++|+ ..++++..++..+.||+.+|..-+...
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSH  212 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhH
Confidence            9999999999999999988889999999987654 4455554 458899999999999999999876543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=7.3e-20  Score=114.49  Aligned_cols=88  Identities=40%  Similarity=0.603  Sum_probs=55.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  ++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAEN--GNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHT--THHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHc--CCHHH
Confidence            3556666666666666666655554    55666666666666666666666666666666666666666644  66666


Q ss_pred             HHHHHHcCCCCccC
Q psy8421          82 IKTLVHAGADVNHS   95 (237)
Q Consensus        82 ~~~ll~~~~~~~~~   95 (237)
                      +++|++.|++++.+
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            66666666665543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.83  E-value=6.5e-20  Score=147.95  Aligned_cols=179  Identities=21%  Similarity=0.225  Sum_probs=137.6

Q ss_pred             cHHHHHHHcCChhHHHHHHHcC---------CCccccCcCCCcHHHHHHHhCC-CCHHHHHHHHHcCCCC-c----cCCC
Q psy8421          33 TPLRAACYDGRLDIVKYLIEHG---------ADLNITNHYNNSCLMIAAYKGA-GHLSVIKTLVHAGADV-N----HSTK   97 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~~~~~l~~a~~~~~-~~~~~~~~ll~~~~~~-~----~~~~   97 (237)
                      .++..|...+..+....++..+         -+++.+...|.|.||.|..+.. ++.++++.|++.-..+ +    ....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5566777777776666666544         2345556678888888886422 3447777777643221 1    1234


Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHcCCCCccc-----------------------cCCCCchhHHHHHcCCCCHHHHHHHH
Q psy8421          98 TQSTPLRAACYDGRLDIVKYLIEHGADLNIT-----------------------NHYNNSCLMIAAYKGAGHLSVIKTLV  154 (237)
Q Consensus        98 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~-----------------------~~~~~t~l~~a~~~~~~~~~~~~~l~  154 (237)
                      .|.||||.|+-+.+.+++..|++.|+|++.+                       -..|..||..|++.  +..+++++|+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~--nq~eivrlLl  260 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT--NQPEIVRLLL  260 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc--CCHHHHHHHH
Confidence            5788888888888888888888888877532                       12577899999999  9999999999


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC--cccccCCCCcHHHHHHHhCcc
Q psy8421         155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       155 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      ++|+|++.+|.+|+|.||..+.+-..++..+++++|++  ..++|..|.|||.+|++.|+.
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence            99999999999999999999999889999999999999  899999999999999998865

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=1.1e-19  Score=113.61  Aligned_cols=89  Identities=47%  Similarity=0.769  Sum_probs=72.0

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhH
Q psy8421         103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI  182 (237)
Q Consensus       103 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  182 (237)
                      ||+|++.++.+++++|++.+.+++.    |.||+|+|+..  ++.+++++|+++|.+++.++.+|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN--GNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT--TTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc--CCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            5788888888888888887766654    77888888877  88888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCccccc
Q psy8421         183 VKYLIEHGADLNITN  197 (237)
Q Consensus       183 ~~~Ll~~g~~~~~~~  197 (237)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            888888888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.83  E-value=3.7e-20  Score=132.95  Aligned_cols=122  Identities=34%  Similarity=0.457  Sum_probs=98.3

Q ss_pred             HHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc
Q psy8421          49 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT  128 (237)
Q Consensus        49 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~  128 (237)
                      ||-+...+.|.-|..|.+|||+|+.  .|+..+++.|+.+|+.++..+....+|||.|+..|+-++++.|++..+++|..
T Consensus        19 wld~tehdln~gddhgfsplhwaak--egh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnav   96 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAK--EGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAV   96 (448)
T ss_pred             EecCcccccccccccCcchhhhhhh--cccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchh
Confidence            3434556677778888888888884  48888888888888888888777788888888888888888888888888888


Q ss_pred             cCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy8421         129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA  174 (237)
Q Consensus       129 ~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  174 (237)
                      +..|.|||||||..  |...+.+-|+..|+-++..++.|.||+..|
T Consensus        97 nehgntplhyacfw--gydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   97 NEHGNTPLHYACFW--GYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hccCCCchhhhhhh--cHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            88888888888877  777788888888888888888888888766

>KOG4369|consensus

Probab=99.82  E-value=1.5e-20  Score=155.75  Aligned_cols=207  Identities=29%  Similarity=0.377  Sum_probs=98.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCcccc--CcCCCcHHHHHHHhCCCCH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT--NHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~~l~~a~~~~~~~~   79 (237)
                      |-.||..|+.++|++|+..|++-..++-...|||..|..-|.+++|+.|+..|.+++.+  ...|-.||++|...  |+.
T Consensus       828 lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmn--gh~  905 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMN--GHQ  905 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhc--ccc
Confidence            33455555555555555555554444444455555555555555555555555444443  23344555555543  444


Q ss_pred             HHHHHHHHcCCCCccCCC-CCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          80 SVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      +..+.|++.|.+++..-. +.+|+|.+|+..|..+++..|+...+.+..+...|.|||.-++..  |.+++-++|+..|+
T Consensus       906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~Asg--Gyvdvg~~li~~ga  983 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASG--GYVDVGNLLIAAGA  983 (2131)
T ss_pred             HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcC--Cccccchhhhhccc
Confidence            444444444444443222 223444444444444444444444443333344444444444432  33333333333333


Q ss_pred             C-----------------------------------CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcH
Q psy8421         159 D-----------------------------------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC  203 (237)
Q Consensus       159 ~-----------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  203 (237)
                      |                                   +..+++.|.|+|++|+..|.+..+..|+++++|++..|....++
T Consensus       984 d~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~ 1063 (2131)
T KOG4369|consen  984 DTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSR 1063 (2131)
T ss_pred             ccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccc
Confidence            3                                   33444455555555555555555555555555555555555555


Q ss_pred             HHHHHHhCc
Q psy8421         204 LMIAAYKGI  212 (237)
Q Consensus       204 l~~a~~~~~  212 (237)
                      ++.|..+|.
T Consensus      1064 ~maafRKgh 1072 (2131)
T KOG4369|consen 1064 TMAAFRKGH 1072 (2131)
T ss_pred             cHHHHHhch
Confidence            555555553

>KOG0195|consensus

Probab=99.82  E-value=5.3e-20  Score=132.16  Aligned_cols=139  Identities=30%  Similarity=0.385  Sum_probs=120.7

Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCC
Q psy8421          19 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT   98 (237)
Q Consensus        19 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~   98 (237)
                      +.--++|.-|..|.+|||+||+.|+..+++.|+..|+.+|..+...-||||+|+.+  |+-++++.|+++.++++..+..
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah--ghrdivqkll~~kadvnavneh   99 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH--GHRDIVQKLLSRKADVNAVNEH   99 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc--ccHHHHHHHHHHhcccchhhcc
Confidence            34456788889999999999999999999999999999999998889999999966  9999999999999999999999


Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        99 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      |.+|||+||..|.-.+.+-|+..|+.++..+..|.||+..|-..  -...+.+..-++|-.++
T Consensus       100 gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~--l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM--LKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH--HHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999877533  22333344444555443

>KOG3676|consensus

Probab=99.82  E-value=3.4e-19  Score=143.90  Aligned_cols=182  Identities=25%  Similarity=0.310  Sum_probs=153.6

Q ss_pred             hhccCCcHHHHHHHHHcC---------CCCCCCCCCCCcHHHHHHHc---CChhHHHHHHHcCCCc----cc-cCcCCCc
Q psy8421           4 AYKGAGHLSVIKTLVHAG---------ADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADL----NI-TNHYNNS   66 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~---------~~~~~~~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~----~~-~~~~~~~   66 (237)
                      .+...|.++.+..+...+         .+.+.....|+|.||.|..+   ++.+++..|++.-+.+    .. ....|+|
T Consensus       107 ~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqS  186 (782)
T KOG3676|consen  107 IADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQS  186 (782)
T ss_pred             hccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcc
Confidence            345566777777776655         45666677899999999985   3468999999865432    11 2356999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHcCCCCccCC-----------------------CCCCCHHHHHHhcCCHHHHHHHHHcCC
Q psy8421          67 CLMIAAYKGAGHLSVIKTLVHAGADVNHST-----------------------KTQSTPLRAACYDGRLDIVKYLIEHGA  123 (237)
Q Consensus        67 ~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~-----------------------~~~~~~l~~a~~~~~~~~~~~L~~~~~  123 (237)
                      |||.|+.+  .+.+++++|++.|++++.+.                       +.|..||.+|+--++.+++++|+++|+
T Consensus       187 aLHiAIv~--~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gA  264 (782)
T KOG3676|consen  187 ALHIAIVN--RDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGA  264 (782)
T ss_pred             hHHHHHHh--ccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCC
Confidence            99999966  89999999999999976421                       236789999999999999999999999


Q ss_pred             CCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         124 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD--VNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       124 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      +++..|..|+|.||..+..  ...++...++++|++  ...++..|-|||.+|++.|+.++++.+++.
T Consensus       265 d~~aqDS~GNTVLH~lVi~--~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  265 DPNAQDSNGNTVLHMLVIH--FVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCccccCCChHHHHHHHH--HHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999998  899999999999999  788999999999999999999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=2.5e-18  Score=114.51  Aligned_cols=122  Identities=43%  Similarity=0.669  Sum_probs=75.6

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421          28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~  107 (237)
                      +..|.|||+.|+..++.+++++|++.+.+.+..+..|.+|+|+|+..  ++.++++++++.+..++..+..+.+|+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN--GHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            34566677777777777777777766666666666666666666644  6666666666666555555555666666666


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421         108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                      ..++.+++++|++++.+.+..+..+.||++.+...  ++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN--GHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc--CCHHHHHHh
Confidence            66666666666666555555555555555555554  555555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=3.9e-18  Score=113.56  Aligned_cols=122  Identities=43%  Similarity=0.638  Sum_probs=81.7

Q ss_pred             CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHH
Q psy8421          61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA  140 (237)
Q Consensus        61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~  140 (237)
                      +..|.||||+|+..  ++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|++.+..++..+..+.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~--~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASN--GHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHc--CcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            45566777777744  6667777777766666666666667777777777777777777766666666666667777766


Q ss_pred             HcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                      ..  ++.+++++|++++.+.+..+..+.||+++|...++.+++++|
T Consensus        82 ~~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RN--GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             Hc--CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            65  666677777666666666666666777776666666666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.71  E-value=8.3e-17  Score=95.88  Aligned_cols=103  Identities=28%  Similarity=0.390  Sum_probs=90.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChh
Q psy8421         102 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD  181 (237)
Q Consensus       102 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  181 (237)
                      -+.|++++|.++-++..+..|.+++.. ..|++|+|+|+..  |..+++++|+..|++++.+|++|-|||..|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~--GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADY--GQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhc--chHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            367888999999999999888777643 4789999999977  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcccccCCCCcHHHHH
Q psy8421         182 IVKYLIEHGADLNITNHYNNSCLMIA  207 (237)
Q Consensus       182 ~~~~Ll~~g~~~~~~~~~g~t~l~~a  207 (237)
                      +|++|++.|++.......|.+.+..+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999988888888877654

>KOG4214|consensus

Probab=99.69  E-value=1.5e-16  Score=94.80  Aligned_cols=96  Identities=30%  Similarity=0.426  Sum_probs=51.2

Q ss_pred             HHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHH
Q psy8421          35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI  114 (237)
Q Consensus        35 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  114 (237)
                      +.|++++|.++-|+.....|.++|-. ..|++|||+|+  ..|..+++++|+..|++++.+|+.|.|||-.|+..|+.+|
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAA--D~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAA--DYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhh--hcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            44555555555555555555444422 24555555555  3355555555555555555555555555555555555555


Q ss_pred             HHHHHHcCCCCccccCCCC
Q psy8421         115 VKYLIEHGADLNITNHYNN  133 (237)
Q Consensus       115 ~~~L~~~~~~~~~~~~~~~  133 (237)
                      +++|++.|++-..+...|.
T Consensus        83 VklLL~~GAdrt~~~PdG~  101 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGT  101 (117)
T ss_pred             HHHHHHcCcccceeCCCch
Confidence            5555555555444433443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=1.4e-16  Score=89.78  Aligned_cols=55  Identities=36%  Similarity=0.494  Sum_probs=32.9

Q ss_pred             HHhCC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHH
Q psy8421         153 LVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA  207 (237)
Q Consensus       153 l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  207 (237)
                      |+++| .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45667 88999999999999999999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=3.6e-14  Score=104.26  Aligned_cols=129  Identities=33%  Similarity=0.483  Sum_probs=104.5

Q ss_pred             cccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC-----HHHHHHHHHcCC---CCcccc
Q psy8421          58 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR-----LDIVKYLIEHGA---DLNITN  129 (237)
Q Consensus        58 ~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~L~~~~~---~~~~~~  129 (237)
                      ...+..+.++++.++..  +..+++.+++..+.+++..+..|.||+|+|+..++     .++++.|++.|.   ..+..+
T Consensus        67 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          67 AARDLDGRLPLHSAASK--GDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             ccCCccccCHHHHHHHc--CcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            34556677888888854  77777788888888888888888888888888888     888888888888   455558


Q ss_pred             CCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       130 ~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                      ..|.||+|+|+..  ++.++++.+++.|.+++.++..|.|+++.|+..++.+++..+++.+
T Consensus       145 ~~g~tpl~~A~~~--~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALN--GDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHc--CchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            8888888888877  7778888888888888888888888888888888888888888854

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=1.3e-14  Score=106.68  Aligned_cols=122  Identities=37%  Similarity=0.509  Sum_probs=60.4

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC-----HHHHHHHHHcCC---CCccCCCCCCCH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH-----LSVIKTLVHAGA---DVNHSTKTQSTP  102 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~-----~~~~~~ll~~~~---~~~~~~~~~~~~  102 (237)
                      +.++++.++..+..+++++++..|.+++.++..|.||+|+|+..  ++     .++++.|++.|+   ..+..+..|.||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN--GNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc--CCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence            44455555555555555555555555544555555555555533  44     455555555544   333334455555


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421         103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus       103 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      +|+|+..|+.++++.|++.|.+++..+..|.|+++.++..  +..+++..+.+.
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~l~~~  202 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN--GRIELVKLLLDK  202 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc--chHHHHHHHHhc
Confidence            5555555555555555555555444444555555555544  444555444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=9.7e-16  Score=86.34  Aligned_cols=55  Identities=36%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHH
Q psy8421          17 LVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA   71 (237)
Q Consensus        17 L~~~~-~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a   71 (237)
                      |++.| .+++..|..|.||||+|+..|+.+++++|++.|.+++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56677 78888999999999999999999999999999999999999999999986

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.61  E-value=1.1e-14  Score=121.89  Aligned_cols=107  Identities=26%  Similarity=0.290  Sum_probs=99.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChh
Q psy8421         102 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD  181 (237)
Q Consensus       102 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  181 (237)
                      .|+.|+..|+.+.++.|++.|++++..|..|.||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~--g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN--GHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            47889999999999999999999999999999999999988  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-------CCCcccccCCCCcHHHHHHHh
Q psy8421         182 IVKYLIEH-------GADLNITNHYNNSCLMIAAYK  210 (237)
Q Consensus       182 ~~~~Ll~~-------g~~~~~~~~~g~t~l~~a~~~  210 (237)
                      ++++|+++       |++++..+..|.+|+..+...
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~~  198 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPI  198 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhhhh
Confidence            99999998       999999999899888766543

>KOG0515|consensus

Probab=99.60  E-value=4.6e-15  Score=114.89  Aligned_cols=84  Identities=29%  Similarity=0.390  Sum_probs=41.2

Q ss_pred             hccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHH
Q psy8421           5 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT   84 (237)
Q Consensus         5 a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   84 (237)
                      |+-.|-+++|+.++..--|+...+..|.|+||.|+..||.++|++|++.|+++|..|.+|+||||+|+.+  ++..+|+.
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASC--Nnv~~ckq  634 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASC--NNVPMCKQ  634 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhc--CchHHHHH
Confidence            3344445555555444444444444455555555555555555555555555555555555555555533  44555555


Q ss_pred             HHHcCC
Q psy8421          85 LVHAGA   90 (237)
Q Consensus        85 ll~~~~   90 (237)
                      |++.|+
T Consensus       635 LVe~Ga  640 (752)
T KOG0515|consen  635 LVESGA  640 (752)
T ss_pred             HHhccc
Confidence            555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.60  E-value=8.5e-15  Score=122.53  Aligned_cols=101  Identities=27%  Similarity=0.421  Sum_probs=82.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.|+..|+.+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..  ++.++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~--g~~~i  163 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN--GFREV  163 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--CcHHH
Confidence            3456778888888888888888888888888899999988888899988888888888888888999988854  88888


Q ss_pred             HHHHHHc-------CCCCccCCCCCCCHHH
Q psy8421          82 IKTLVHA-------GADVNHSTKTQSTPLR  104 (237)
Q Consensus        82 ~~~ll~~-------~~~~~~~~~~~~~~l~  104 (237)
                      +++|+++       +++.+..+..|.+++.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccc
Confidence            8888887       6666655555555544

>KOG1710|consensus

Probab=99.59  E-value=1.4e-14  Score=104.39  Aligned_cols=116  Identities=26%  Similarity=0.325  Sum_probs=105.2

Q ss_pred             hhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccc-cCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           4 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      .+...|+.+-+..|++.-...+..|++|.|||..|+..|+.++++.|++.|+++|. .+..+.||||+|+.+  |+.+++
T Consensus        18 e~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS--Gn~dvc   95 (396)
T KOG1710|consen   18 EAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS--GNQDVC   95 (396)
T ss_pred             HHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc--CCchHH
Confidence            34556888999999988777899999999999999999999999999999999996 567789999999987  999999


Q ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc
Q psy8421          83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  121 (237)
Q Consensus        83 ~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  121 (237)
                      ++|++.|+.+...+.-|+|+-..|+.-|+.+++..+-++
T Consensus        96 rllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   96 RLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999999999998877543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.58  E-value=7.5e-15  Score=82.31  Aligned_cols=54  Identities=41%  Similarity=0.618  Sum_probs=41.3

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV   86 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll   86 (237)
                      |.||||+|+..|+.+++++|+++|.+++.+|..|.||||+|+..  |+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~--g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN--GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT--T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--cCHHHHHHHC
Confidence            57889999999999999999888888888888889999998865  8888888875

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=5e-14  Score=78.93  Aligned_cols=54  Identities=39%  Similarity=0.624  Sum_probs=33.4

Q ss_pred             CCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       132 ~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                      |+||+|+|+..  ++.+++++|+++|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~--g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARS--GNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHT--T-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHh--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45677777765  6777777777777777766777777777777777777777664

...

>KOG1710|consensus

Probab=99.51  E-value=2e-13  Score=98.49  Aligned_cols=118  Identities=27%  Similarity=0.336  Sum_probs=86.7

Q ss_pred             CcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc-cCCCCchhHHHHHcC
Q psy8421          65 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT-NHYNNSCLMIAAYKG  143 (237)
Q Consensus        65 ~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~-~~~~~t~l~~a~~~~  143 (237)
                      ..||.-++  +.+..+-...|+.....++..|.+|.++|.-|+..|+.++++.|++.|+++|.. +..++|||+.|+.+ 
T Consensus        13 ~~~Lle~i--~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS-   89 (396)
T KOG1710|consen   13 KSPLLEAI--DKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS-   89 (396)
T ss_pred             hhHHHHHH--ccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc-
Confidence            55677777  447777777777765567777777777777777777777777777777777664 45667777777777 


Q ss_pred             CCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       144 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                       |+.++..+|++.|+.....+.-|+|+-.+|+.-|+.++|..+
T Consensus        90 -Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   90 -GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             -CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence             777777777777777777777777777777777777777664

>KOG0515|consensus

Probab=99.46  E-value=4.1e-13  Score=104.29  Aligned_cols=187  Identities=20%  Similarity=0.193  Sum_probs=119.4

Q ss_pred             HHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHH
Q psy8421          35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI  114 (237)
Q Consensus        35 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  114 (237)
                      |.-|+..|-+|+|+..+..-.++...+..|.|+||-|+.-  |+.+|+++|++.|++++..|..|+||||+|++.++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa--ghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA--GHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc--chhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            4567888888888888877778888888888888888854  88888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCcc-ccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCC--CHHHHHHHcCChhHHHHHHHcCC
Q psy8421         115 VKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS--TPLRAACYDGRLDIVKYLIEHGA  191 (237)
Q Consensus       115 ~~~L~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--t~l~~a~~~~~~~~~~~Ll~~g~  191 (237)
                      ++.|++.|+-+-. +-..+.|+..-+-..+.|...|.++|..-.-..-.- +.|.  ....|-+.+++    ++-...|-
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqesmG~m-N~G~vYAlwdYeaqf~D----ELsf~eGd  706 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQESMGSM-NKGVVYALWDYEAQFED----ELSFDEGD  706 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHHhhccc-ccceeEEeecccccccc----cccccCCc
Confidence            8888888766533 334556666655544557777888875321100000 0111  00112222222    11123344


Q ss_pred             Ccccc--cCCCCcHHHHHHHhCccccccCccccccccccc
Q psy8421         192 DLNIT--NHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAV  229 (237)
Q Consensus       192 ~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~  229 (237)
                      .+.+.  +..-.|-+.+|..+|..... -.-++..||...
T Consensus       707 ~lTvirr~d~~eteWWwa~lng~eGyV-PRnylgLyPriK  745 (752)
T KOG0515|consen  707 ELTVIRRDDEVETEWWWARLNGEEGYV-PRNYLGLYPRIK  745 (752)
T ss_pred             eeEEEecCCcchhhhhhHhhcCccccc-chhhhhcCcccc
Confidence            43333  33456888888877765332 223666676654

>KOG0782|consensus

Probab=99.16  E-value=1.5e-10  Score=91.20  Aligned_cols=117  Identities=24%  Similarity=0.329  Sum_probs=100.7

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCC--ccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      ..|+.++++--++....+|.++-.++.+..+.||+|++.|+-|+|++++++|+.  ++..++.|.|+||-|+..  ++-.
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~--~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ--RNRA  948 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh--cchH
Confidence            346667777777888888888888899999999999999999999999999875  556788899999999966  8889


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  121 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  121 (237)
                      ++++|++.|+.+-..|..|.||-..|-+-++.+...+|-+.
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999988999999999999999999988888754

>KOG0783|consensus

Probab=99.15  E-value=2.8e-11  Score=99.06  Aligned_cols=83  Identities=28%  Similarity=0.371  Sum_probs=75.3

Q ss_pred             CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcH
Q psy8421         125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC  203 (237)
Q Consensus       125 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  203 (237)
                      .+.+|..|++++|+++..  +..+++++|+++|++++.+|.+ |.||||.|+.+|+.+++-.|+++|+...+.|+.|.+|
T Consensus        45 anikD~~GR~alH~~~S~--~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSE--NKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeecc--chhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            567888999999999966  8999999999999999988875 8899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy8421         204 LMIAAY  209 (237)
Q Consensus       204 l~~a~~  209 (237)
                      |++-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            998887

>PF13606 Ank_3: Ankyrin repeat

Probab=99.05  E-value=3.4e-10  Score=54.51  Aligned_cols=29  Identities=55%  Similarity=0.960  Sum_probs=23.9

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCCCcc
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGADLN   58 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~   58 (237)
                      +|+||||+||+.|+.|++++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47788888888888888888888888776

>PF13606 Ank_3: Ankyrin repeat

Probab=99.03  E-value=4.2e-10  Score=54.19  Aligned_cols=30  Identities=53%  Similarity=0.919  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHcCChhHHHHHHHcCCCccc
Q psy8421         166 TQSTPLRAACYDGRLDIVKYLIEHGADLNI  195 (237)
Q Consensus       166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  195 (237)
                      +|+||||+|+..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478999999999999999999999988863

>KOG0783|consensus

Probab=98.99  E-value=2.8e-10  Score=93.38  Aligned_cols=91  Identities=19%  Similarity=0.306  Sum_probs=77.5

Q ss_pred             HHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCc
Q psy8421          16 TLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN   93 (237)
Q Consensus        16 ~L~~~~~~-~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~   93 (237)
                      ++.+.+.+ .+..|..|+|+||.|+..+..++++||+++|.+++.+| +.|+||||-|++.  |+++++-.|+.+|..+.
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyy--G~idca~lLL~~g~SL~  113 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYY--GNIDCASLLLSKGRSLR  113 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhh--chHHHHHHHHhcCCceE
Confidence            33344433 56678889999999999999999999999999999877 5689999999987  99999999999999999


Q ss_pred             cCCCCCCCHHHHHHh
Q psy8421          94 HSTKTQSTPLRAACY  108 (237)
Q Consensus        94 ~~~~~~~~~l~~a~~  108 (237)
                      .+|++|..||...++
T Consensus       114 i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EecccCCCHHHHHhh
Confidence            999999999988766

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.99  E-value=7.9e-10  Score=54.85  Aligned_cols=33  Identities=45%  Similarity=0.709  Sum_probs=28.8

Q ss_pred             CCCCHHHHHHHcCChhHHHHHHHcCCCcccccC
Q psy8421         166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNH  198 (237)
Q Consensus       166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  198 (237)
                      +|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.96  E-value=1.5e-09  Score=53.86  Aligned_cols=32  Identities=47%  Similarity=0.719  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCCCccccC
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITN   61 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~   61 (237)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888887765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=98.96  E-value=4.1e-09  Score=81.84  Aligned_cols=84  Identities=24%  Similarity=0.286  Sum_probs=69.2

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~-~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |++.++.|+.|.--.|+..|++.|+.+ +.|.||||.|++.|...-+++|.-+|++++..|..|+||+.+|-.  .|+-+
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~--~gH~~  214 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ--GGHHE  214 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh--cCchH
Confidence            567788888888888888898888765 458889999999999888888888899999999999999998884  47777


Q ss_pred             HHHHHHH
Q psy8421          81 VIKTLVH   87 (237)
Q Consensus        81 ~~~~ll~   87 (237)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            7666654

>KOG0506|consensus

Probab=98.92  E-value=1.9e-09  Score=83.27  Aligned_cols=92  Identities=25%  Similarity=0.320  Sum_probs=77.7

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHH-cCCCCccCCCCCCCHHHHHH
Q psy8421          29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        29 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~  107 (237)
                      .++..++.+|++.|++..++-+.-.|.++..+|.+.+|+||.|+..  |+.+++++|++ .+.+++.+|..|+|||.-|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE--G~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE--GHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc--CceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            3455678889999999888888888888888888889999999855  88999999887 67888888888999999999


Q ss_pred             hcCCHHHHHHHHHcC
Q psy8421         108 YDGRLDIVKYLIEHG  122 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~  122 (237)
                      ..++.+++++|.+.-
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            999999988888753

>KOG0506|consensus

Probab=98.87  E-value=5e-09  Score=81.03  Aligned_cols=89  Identities=26%  Similarity=0.331  Sum_probs=53.7

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHc
Q psy8421          99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYD  177 (237)
Q Consensus        99 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~  177 (237)
                      +...+.+|+..|+...++.+.-.|.+++.+|...+|+||.|+..  |+.+++++|++ .+.+++.+|.+|+|||.-|...
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE--G~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE--GHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc--CceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            33455566666666666666555666666666666666666644  66666666665 3456666666666666666666


Q ss_pred             CChhHHHHHHHc
Q psy8421         178 GRLDIVKYLIEH  189 (237)
Q Consensus       178 ~~~~~~~~Ll~~  189 (237)
                      ++.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            666666666544

>KOG0818|consensus

Probab=98.84  E-value=2.7e-08  Score=77.47  Aligned_cols=85  Identities=26%  Similarity=0.340  Sum_probs=68.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh
Q psy8421         102 PLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  180 (237)
Q Consensus       102 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  180 (237)
                      -||..++.++.+..-.|+..|+++|..+ ..|.||||.|+.-  |...-+++|+-+|+|+...|.+|.||+.+|-..|+-
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~--Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA--GQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc--cchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            4677788888888888888888888754 6788888888866  888888888888888888888888888888888887


Q ss_pred             hHHHHHHH
Q psy8421         181 DIVKYLIE  188 (237)
Q Consensus       181 ~~~~~Ll~  188 (237)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            77776664

>KOG3609|consensus

Probab=98.79  E-value=4.4e-08  Score=81.09  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=98.0

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcC----CCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHG----ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA  106 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a  106 (237)
                      +.--...|+..|+...|+..++..    .++|..|..|+++|+.|+  ++.+.++.++|++.....       ..++-.|
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai--~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAI--DNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccc--ccccHHHHHHHhcCcccc-------chHHHHH
Confidence            445678999999999999998542    457778999999999999  669999999999876443       3578899


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         107 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       107 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                      ++.+..++++.++.+.........                         .+......-..+.||+.+|+..++.++++.|
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~-------------------------~~d~~~~~ft~ditPliLAAh~NnyEil~~L  150 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLER-------------------------SGDANSPHFTPDITPLMLAAHLNNFEILQCL  150 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhcc-------------------------ccccCcccCCCCccHHHHHHHhcchHHHHHH
Confidence            999999999999987433221110                         0011112233456777777777777777777


Q ss_pred             HHcCCCcccccCCCCcHH
Q psy8421         187 IEHGADLNITNHYNNSCL  204 (237)
Q Consensus       187 l~~g~~~~~~~~~g~t~l  204 (237)
                      +++|+.+......+..+-
T Consensus       151 l~kg~~i~~PH~~~C~C~  168 (822)
T KOG3609|consen  151 LTRGHCIPIPHDIRCECK  168 (822)
T ss_pred             HHcCCCCCCCcccccCch
Confidence            777776655554444333

>KOG0782|consensus

Probab=98.67  E-value=1.3e-07  Score=75.21  Aligned_cols=103  Identities=26%  Similarity=0.381  Sum_probs=77.9

Q ss_pred             HHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC--CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        84 ~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      ....+|.++-.++....+.||+|++.|+-+++++++++|..  .+..+..|.|+||.|+..  ++-.++++|++.|+.+-
T Consensus       884 E~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~--~~r~vc~~lvdagasl~  961 (1004)
T KOG0782|consen  884 ETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ--RNRAVCQLLVDAGASLR  961 (1004)
T ss_pred             HHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh--cchHHHHHHHhcchhhe
Confidence            33445666666677777777777777777777777777643  345567788888888877  77788888888888888


Q ss_pred             CCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         162 HSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      ..|..|.||-..|-+-|++++.-+|-.
T Consensus       962 ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  962 KTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             ecccCCCChHHHHHhcCCchHHHHHhh
Confidence            888888888888888888888887754

>KOG0511|consensus

Probab=98.67  E-value=1.1e-07  Score=71.87  Aligned_cols=70  Identities=30%  Similarity=0.437  Sum_probs=59.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA   72 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~   72 (237)
                      |+.||+.|+++.|++|++.|.++|..|.+..+||.+|+..||.++|++|+++|+--.--.-.|..+ ||++
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~Yga  109 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGA  109 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhh
Confidence            578999999999999999999999999999999999999999999999999997655444445444 4544

>KOG0705|consensus

Probab=98.65  E-value=9.8e-08  Score=75.76  Aligned_cols=93  Identities=24%  Similarity=0.268  Sum_probs=79.8

Q ss_pred             CcHHHHHHHcCChhHHHHHHHcCCCc--c--ccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421          32 STPLRAACYDGRLDIVKYLIEHGADL--N--ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        32 ~t~l~~A~~~g~~~~v~~Ll~~~~~~--~--~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~  107 (237)
                      ..-|.-|+...++..+-+|+.+|...  +  ..+..|.|+||+|+..  |++.+.++|+.+|.+....|..|+|+|.+|-
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~--gnVvl~QLLiWyg~dv~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK--GNVVLAQLLIWYGVDVMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh--cchhHHHHHHHhCccceecccCCchhhhhHh
Confidence            34688888888899999999988643  2  2456789999999955  9999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCc
Q psy8421         108 YDGRLDIVKYLIEHGADLN  126 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~~  126 (237)
                      +.|.-+|+..|+++|+...
T Consensus       703 ~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hcccHHHHHHHHHcCCCcc
Confidence            9999999999999987643

>KOG0705|consensus

Probab=98.64  E-value=1.5e-07  Score=74.77  Aligned_cols=89  Identities=24%  Similarity=0.265  Sum_probs=76.9

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCc----cccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy8421         103 LRAACYDGRLDIVKYLIEHGADLN----ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG  178 (237)
Q Consensus       103 l~~a~~~~~~~~~~~L~~~~~~~~----~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  178 (237)
                      |..|....+...+-+|+.+|....    ..+..|+|+||+|+..  ++..+.++|+-+|+|+-.+|..|+|+|.||-+.|
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~--gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK--GNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh--cchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            455666778888889999875432    3456789999999988  9999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHcCCCc
Q psy8421         179 RLDIVKYLIEHGADL  193 (237)
Q Consensus       179 ~~~~~~~Ll~~g~~~  193 (237)
                      .-+++..|+++|...
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999998754

>KOG0522|consensus

Probab=98.62  E-value=9.4e-08  Score=75.15  Aligned_cols=87  Identities=23%  Similarity=0.298  Sum_probs=64.0

Q ss_pred             CHHHHHHhcCCHHHHHHHHH--cCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy8421         101 TPLRAACYDGRLDIVKYLIE--HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG  178 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~--~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  178 (237)
                      .|+|++......+-+...+.  .+..++.+|..|.||+|+|+..  ++.+.++.|+..|+++..++++|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L--g~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL--GHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh--cCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence            34777777777666555433  2455666777778888888877  8888888888888888888888888888888888


Q ss_pred             ChhHHHHHHHc
Q psy8421         179 RLDIVKYLIEH  189 (237)
Q Consensus       179 ~~~~~~~Ll~~  189 (237)
                      +.+++..++.+
T Consensus       100 ~~q~i~~vlr~  110 (560)
T KOG0522|consen  100 NEQIITEVLRH  110 (560)
T ss_pred             CHHHHHHHHHH
Confidence            87777766654

>KOG0522|consensus

Probab=98.57  E-value=2.5e-07  Score=72.83  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             cHHHHHHHhCCCCHH-HHHHHHH-cCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcC
Q psy8421          66 SCLMIAAYKGAGHLS-VIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  143 (237)
Q Consensus        66 ~~l~~a~~~~~~~~~-~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~  143 (237)
                      .|+|++...  ...+ +.+.+.. ....++..|..|.||+|.|+.-|+.+.++.|+..|+++..++..|++|+|-|+.. 
T Consensus        22 ~~lh~~~~~--~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~-   98 (560)
T KOG0522|consen   22 KPLHWAVVT--TDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST-   98 (560)
T ss_pred             cccchhhhc--cchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc-
Confidence            458888865  3333 3333332 3456778888889999999999999999999999999888899999999999988 


Q ss_pred             CCCHHHHHHHHhC
Q psy8421         144 AGHLSVIKTLVHA  156 (237)
Q Consensus       144 ~~~~~~~~~l~~~  156 (237)
                       ++..++..++.+
T Consensus        99 -g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 -GNEQIITEVLRH  110 (560)
T ss_pred             -CCHHHHHHHHHH
Confidence             887777776653

>KOG3609|consensus

Probab=98.52  E-value=5.6e-07  Score=74.80  Aligned_cols=116  Identities=16%  Similarity=0.259  Sum_probs=95.1

Q ss_pred             hhccCCcHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           4 AYKGAGHLSVIKTLVHAG----ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~----~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      .|+..|+...|+.+++..    .++|-.|.-|+++++.|+.+.+.|++++|++++.+.       ..+|.+|+..  +..
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~--~~v  101 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV--GSV  101 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH--HHH
Confidence            478899999999999764    346678889999999999999999999999986554       4578899965  999


Q ss_pred             HHHHHHHHcCCCCc----------cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc
Q psy8421          80 SVIKTLVHAGADVN----------HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT  128 (237)
Q Consensus        80 ~~~~~ll~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~  128 (237)
                      ++++.++.+.....          .......||+..|+..+++++++.|+.+|..+..+
T Consensus       102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            99999998654331          12234679999999999999999999999876543

>KOG0521|consensus

Probab=98.38  E-value=4.1e-07  Score=77.12  Aligned_cols=80  Identities=30%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             CCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy8421         130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY  209 (237)
Q Consensus       130 ~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  209 (237)
                      ..|.+++|.|+..  +..-++++|+++|.++|..|..|++|+|.+...|+...+..++++|+++++.+..|++|+++|..
T Consensus       654 ~~~~s~lh~a~~~--~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGT--GDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhcc--chHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            4578999999977  88899999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hC
Q psy8421         210 KG  211 (237)
Q Consensus       210 ~~  211 (237)
                      ..
T Consensus       732 ~~  733 (785)
T KOG0521|consen  732 AA  733 (785)
T ss_pred             hc
Confidence            73

>KOG0511|consensus

Probab=98.37  E-value=1.7e-06  Score=65.69  Aligned_cols=68  Identities=32%  Similarity=0.512  Sum_probs=62.0

Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHH
Q psy8421          34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL  103 (237)
Q Consensus        34 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l  103 (237)
                      -|..||+.|+.+.|+.|++.|.++|..|.+...||.+|+..  |+.+++++|+++|+-...-...|..++
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc--GHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC--GHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc--CcHHHHHHHHHcCCcccccccCcchhh
Confidence            48999999999999999999999999999999999999988  999999999999998877666776553

>KOG2384|consensus

Probab=98.30  E-value=2.8e-06  Score=58.36  Aligned_cols=73  Identities=21%  Similarity=0.338  Sum_probs=63.8

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcC-CCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccC
Q psy8421          21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS   95 (237)
Q Consensus        21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~   95 (237)
                      +.++|..|..|+|++..|+..|..+.+.||+.+| +.+...|..+.+++.+|-  +.|..+++..|.++..+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae--k~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE--KGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH--hcChHHHHHHHHHHhccCCCc
Confidence            4578899999999999999999999999999999 889999999999999998  459999999999875554433

>KOG0521|consensus

Probab=98.23  E-value=2.9e-06  Score=72.13  Aligned_cols=89  Identities=29%  Similarity=0.303  Sum_probs=80.7

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy8421          97 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY  176 (237)
Q Consensus        97 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  176 (237)
                      ..|.+++|.|+..+..-+.++|+++|.+++..+..|++|+|.+...  ++......++++|++.+..+..|.+|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~--g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATAS--GHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhh--cccchhhhhccccccccccCccCcchhhHHhh
Confidence            4578999999999999999999999999999999999999999988  99999999999999999999999999999987


Q ss_pred             cCChhHHHHHH
Q psy8421         177 DGRLDIVKYLI  187 (237)
Q Consensus       177 ~~~~~~~~~Ll  187 (237)
                      ..+.+.+-++.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            76666665543

>KOG2384|consensus

Probab=98.19  E-value=8.6e-06  Score=56.05  Aligned_cols=69  Identities=22%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcC-CCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC
Q psy8421          54 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  124 (237)
Q Consensus        54 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~  124 (237)
                      +.++|.+|..|+|+++.|+..  |+.+.+.+|+.+| +.+...+..+.+++.+|-+.|..+++..|.+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~e--g~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAME--GSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhh--cchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            457889999999999999955  9999999999999 89999999999999999999999999999987443

>KOG0520|consensus

Probab=98.01  E-value=5e-06  Score=70.77  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHH-HcCCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      +|.++..++...++.+++. |......|.+|.-.+|.++ .++.++.-+++ -.|..++++|..|+||||+|+.+  |+.
T Consensus       578 lhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~--G~e  654 (975)
T KOG0520|consen  578 LHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR--GRE  654 (975)
T ss_pred             HHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhc--CHH
Confidence            3455555666666666654 4444444444555555533 33333333333 34555666666666666666644  666


Q ss_pred             HHHHHHHHcCCCC------ccCCCCCCCHHHHHHhcCCHHHHHHHHH
Q psy8421          80 SVIKTLVHAGADV------NHSTKTQSTPLRAACYDGRLDIVKYLIE  120 (237)
Q Consensus        80 ~~~~~ll~~~~~~------~~~~~~~~~~l~~a~~~~~~~~~~~L~~  120 (237)
                      .++..|...|++.      ......|.|+-..|-.+|+..+..+|-+
T Consensus       655 ~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  655 KLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            6666666544432      2223345555555555555554444443

>KOG0520|consensus

Probab=97.95  E-value=9.2e-06  Score=69.24  Aligned_cols=119  Identities=18%  Similarity=0.090  Sum_probs=88.2

Q ss_pred             cCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCchhHHHHHcCCCCHHHHHH-HHhCCCCCCCCCCCCCCHH
Q psy8421          94 HSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKT-LVHAGADVNHSTKTQSTPL  171 (237)
Q Consensus        94 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~t~l  171 (237)
                      .....+.+.+|+++..+..-.++.+++- |......+..+...+|.++.   +..+..-+ ..-.|..++.+|..|+|||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~---lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA---LGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh---cCCceeEEEEeecccccccccCCCCccc
Confidence            3445678889999999988888888875 54445556666777777443   33343333 3346788899999999999


Q ss_pred             HHHHHcCChhHHHHHHHcCCC------cccccCCCCcHHHHHHHhCcccc
Q psy8421         172 RAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYKGIDVG  215 (237)
Q Consensus       172 ~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~a~~~~~~~~  215 (237)
                      |+|+.+|+..++..|...|++      ++.....|.|+-..|...|++..
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            999999999999999987764      44444568999999998876644

>KOG2505|consensus

Probab=97.76  E-value=3.8e-05  Score=60.50  Aligned_cols=64  Identities=23%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHhCCCCCCCC------CCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHH
Q psy8421         145 GHLSVIKTLVHAGADVNHS------TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA  208 (237)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~~------~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  208 (237)
                      .-...+++|.+++.+.|..      +.-..|+||+|+..|.-+++.+||+.|+||.++|..|+||++++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4567889999888776532      233569999999999999999999999999999999999999887

>smart00248 ANK ankyrin repeats

Probab=97.49  E-value=0.00027  Score=32.84  Aligned_cols=27  Identities=44%  Similarity=0.797  Sum_probs=20.1

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCc
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADL   57 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~   57 (237)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567778887777788888777776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.41  E-value=0.00034  Score=32.48  Aligned_cols=28  Identities=46%  Similarity=0.814  Sum_probs=21.4

Q ss_pred             CCCHHHHHHHcCChhHHHHHHHcCCCcc
Q psy8421         167 QSTPLRAACYDGRLDIVKYLIEHGADLN  194 (237)
Q Consensus       167 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  194 (237)
                      +.||+|+|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5678888888888888888887776653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.99  E-value=0.0013  Score=52.20  Aligned_cols=39  Identities=26%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             cHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHH
Q psy8421          33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA   71 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a   71 (237)
                      |+||+|+..|.-++|.++++.|.++...|..|.||..++
T Consensus       432 T~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  432 TFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             hHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            455555555555555555555555555555555554443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.56  E-value=0.024  Score=39.37  Aligned_cols=140  Identities=17%  Similarity=0.107  Sum_probs=87.2

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG  110 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  110 (237)
                      -...+..|++.+..++++..-+...+-   -...++-...||..  .+.++++|+-+.-.-     .+-.+.+..|....
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~--qkydiV~WI~qnL~i-----~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEE--QKYDIVKWIGQNLHI-----YNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHH--ccccHHHHHhhccCC-----CCchhhhhhhhhcc
Confidence            345677888888888887776543211   12346667788844  788888888553221     22234567777777


Q ss_pred             CHHHHH----HHHHcCCCCcccc--CCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHH
Q psy8421         111 RLDIVK----YLIEHGADLNITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK  184 (237)
Q Consensus       111 ~~~~~~----~L~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  184 (237)
                      +.++..    +++++.......|  .--..-+..|+..  |-..++-..+++|.+++.      +.|-.|+..++..++.
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~k--gll~F~letlkygg~~~~------~vls~Av~ynhRkIL~  187 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAK--GLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILD  187 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHC--CCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHH
Confidence            766432    3333321110111  0111346677777  888888888889888765      5788999999988888


Q ss_pred             HHHH
Q psy8421         185 YLIE  188 (237)
Q Consensus       185 ~Ll~  188 (237)
                      +++.
T Consensus       188 yfi~  191 (192)
T PF03158_consen  188 YFIR  191 (192)
T ss_pred             Hhhc
Confidence            8764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.56  E-value=0.02  Score=41.12  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCCcccc----CCCCchhHHHHHcCCCCHHHHHHHHhCC-CCCC---CCCCCCCCHHH
Q psy8421         101 TPLRAACYDGRLDIVKYLIEHGADLNITN----HYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVN---HSTKTQSTPLR  172 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~~~l~~~~-~~~~---~~~~~~~t~l~  172 (237)
                      +++.+++..+.-+++-+|+.+- .....|    ..+..-+-++....+.+..++++++.+| +++|   .+.+.|.|-|.
T Consensus       181 ~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            5677777777788888887651 111111    1233345566655557888999999999 6676   34567999999


Q ss_pred             HHHHcCChhHHHHHHHcCCCc
Q psy8421         173 AACYDGRLDIVKYLIEHGADL  193 (237)
Q Consensus       173 ~a~~~~~~~~~~~Ll~~g~~~  193 (237)
                      -|+++++.+++.+|+++|+-.
T Consensus       260 NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.45  E-value=0.029  Score=40.34  Aligned_cols=20  Identities=15%  Similarity=0.327  Sum_probs=11.0

Q ss_pred             cHHHHHHHcCChhHHHHHHH
Q psy8421          33 TPLRAACYDGRLDIVKYLIE   52 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~   52 (237)
                      +++.+|+.++.-+++.+|+.
T Consensus       181 ~Am~~si~~~K~dva~~lls  200 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLS  200 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHh
Confidence            45555555555555555553

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.01  E-value=0.13  Score=35.83  Aligned_cols=149  Identities=19%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             CChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc
Q psy8421          42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  121 (237)
Q Consensus        42 g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  121 (237)
                      .++++++..-+....     ..-..-+..|+.+  +..++++..-+...   ..-..+.+.+..||+..+.++++|+-+.
T Consensus        29 qdp~~FEkCH~l~~~-----c~~~CLl~HAVk~--nmL~ILqkyke~L~---~~~~~~q~LFElAC~~qkydiV~WI~qn   98 (192)
T PF03158_consen   29 QDPETFEKCHELNNS-----CDMWCLLYHAVKY--NMLSILQKYKEDLE---NERYLNQELFELACEEQKYDIVKWIGQN   98 (192)
T ss_pred             cCHHHHHHHHHhhcc-----CCHHHHHHHHHHc--CcHHHHHHHHHHhh---cchhHHHHHHHHHHHHccccHHHHHhhc
Confidence            456666655433211     1113345666644  77777777655332   1123455778899999999999999654


Q ss_pred             CCCCccccCCCCchhHHHHHcCCCCHHHH----HHHHhCCCCCCCCCCC--CCCHHHHHHHcCChhHHHHHHHcCCCccc
Q psy8421         122 GADLNITNHYNNSCLMIAAYKGAGHLSVI----KTLVHAGADVNHSTKT--QSTPLRAACYDGRLDIVKYLIEHGADLNI  195 (237)
Q Consensus       122 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~----~~l~~~~~~~~~~~~~--~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  195 (237)
                      -   ..  ..-.+.+..|...  .+.++.    .+++.+...-...|..  -..-|..|+..|-...+...+++|.+++.
T Consensus        99 L---~i--~~~~~iFdIA~~~--kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~  171 (192)
T PF03158_consen   99 L---HI--YNPEDIFDIAFAK--KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI  171 (192)
T ss_pred             c---CC--CCchhhhhhhhhc--cchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH
Confidence            2   11  1223445566655  555543    2233332211011100  01235789999999999999999988864


Q ss_pred             ccCCCCcHHHHHHHhCcc
Q psy8421         196 TNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       196 ~~~~g~t~l~~a~~~~~~  213 (237)
                            +.+..|+.++..
T Consensus       172 ------~vls~Av~ynhR  183 (192)
T PF03158_consen  172 ------IVLSQAVKYNHR  183 (192)
T ss_pred             ------HHHHHHHHhhHH
Confidence                  889999988754

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.88  E-value=0.037  Score=32.94  Aligned_cols=46  Identities=20%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHc
Q psy8421          34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA   88 (237)
Q Consensus        34 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~   88 (237)
                      .+..|+..|+.|+++.+++.+ .++      ...+..|+..  .+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~--H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS--HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH--hhHHHHHHHHHh
Confidence            456666666666666666443 111      2345566643  566666666653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.26  E-value=0.37  Score=28.60  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=33.9

Q ss_pred             CcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc
Q psy8421          65 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  121 (237)
Q Consensus        65 ~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~  121 (237)
                      ...+..|+..  |+.++++.+++.+ .++      ...+..|+...+.++++||++.
T Consensus         7 ~~tl~~Ai~G--GN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIG--GNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhC--CCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456777754  8888888887654 111      3467888888888888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-22
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-22
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-20
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-20
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-20
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-20
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-19
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-18
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-19
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-19
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-19
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-18
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-19
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-18
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-19
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-18
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-18
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-18
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-17
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-17
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-17
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-17
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-17
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-17
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-10
1uoh_A	226	Human Gankyrin Length = 226		4e-17
1uoh_A	226	Human Gankyrin Length = 226		5e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-17
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-16
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-17
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-16
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-17
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-14
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-04
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-14
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-13
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-13
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-13
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-13
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		7e-13
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-12
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-12
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-12
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-11
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-10
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-10
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-10
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-10
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-10
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-09
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		9e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		8e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		8e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		5e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		5e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N  +    + L
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
            +AA    GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GA
Sbjct: 73  HLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N  +    + L
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
            +AA    GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GA
Sbjct: 73  HLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN +  T +TPL  A Y G L+IV+ L++HGAD++ ++ +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AAY   GHL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAAY--WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +  T +TPL  A Y G L+IV+ L++HGAD++ ++ +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AAY   GHL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAAY--WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AGH+ +   LV AGA+++  ++ Q TPL  A  +  L+ VKYLI+ GA ++  +   ++C
Sbjct: 21  AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80
Query: 68  LMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
           L +AA K  GH  V++ L+  G  DVN       TP+  A     +D+VK L+  G+D+N
Sbjct: 81  LHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           I ++  N CL  AA+ G   + + + L+ A  D++       +PL  A  + R D V   
Sbjct: 139 IRDNEENICLHWAAFSGC--VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 187 IEHGADLNITNHYNNSCLMIAA 208
           +   +D+ + N    + L  A+
Sbjct: 197 LSRDSDVTLKNKEGETPLQCAS 218

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  +    + L +AA +G  HL +++ L+ AGADVN 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
             K   TPL  A  +G L+IV+ L++ GAD+N  +    + L +AA +  GHL +++ L+
Sbjct: 64  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--GHLEIVEVLL 121
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
            AGADVN   K   TP   A  +G  DI + L
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  +    + 
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA +G  HL +++ L+ AGADVN   K   TPL  A  +G L+IV+ L++ GAD+N 
Sbjct: 72  LHLAAREG--HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   +A  +G
Sbjct: 130 QDKFGKTPFDLAIREG 145

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 38  ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
           A  +G  D VK LIE+GAD+N ++    + L  AA +G  H  ++K L+  GADVN    
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEG--HKEIVKLLISKGADVNAKDS 68
Query: 98  TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
              TPL  A  +G  +IVK LI  GAD+N  +    + L  AA +  GH  ++K L+  G
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE--GHKEIVKLLISKG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
           ADVN S     TPL  A   G  +IVK L + G  L 
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +G  D VK LIE+GAD+N ++    + L  AA +G  H  ++K L+  GADVN    
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEG--HKEIVKLLISKGADVNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
              TPL  A  +G  +IVK LI  GAD+N  +    + L  AA +G
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  +    + L +AA +G  HL +++ L+ AGADVN 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
             K   TPL  A  +G L+IV+ L++ GAD+N  +    + L +AA +  GHL +++ L+
Sbjct: 64  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--GHLEIVEVLL 121
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
            AGADVN   K   TP   A  +G  DI + L
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  +    + 
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA +G  HL +++ L+ AGADVN   K   TPL  A  +G L+IV+ L++ GAD+N 
Sbjct: 72  LHLAAREG--HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   +A   G
Sbjct: 130 QDKFGKTPFDLAIDNG 145

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  +    + L +AA KG  HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG--HLEIVEVLLKHGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
           + K   TPL  A   G L+IV+ L+++GAD+N T+ Y  + L +AA   AGHL +++ L+
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA--DAGHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN    +  TPL  A   G L+IV+ L++HGAD+N  +   ++ 
Sbjct: 24  AGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA  G  HL +++ L+  GADVN +     TPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAALYG--HLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN    T  TPL  A   G L+IV+ L++HGAD++  + Y  + 
Sbjct: 24  AGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA    GHL +++ L+  GADVN    T STPL  A  +G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAAM--TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKG 143
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN    T  TPL  A   G L+IV+ L++HGAD++  + Y  + 
Sbjct: 24  AGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA    GHL +++ L+  GADVN    T STPL  A  +G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAAM--TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 38  ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
           A  +G  D VK LIE+GAD+N ++    + L  AA  G  H  V+K L+  GADVN    
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG--HKEVVKLLISKGADVNAKDS 68
Query: 98  TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
              TPL  A  +G  ++VK LI  GAD+N  +    + L  AA    GH  V+K L+  G
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN--GHKEVVKLLISKG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           ADVN S     TPL  A   G  ++VK L + G 
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +G  D VK LIE+GAD+N ++    + L  AA  G  H  V+K L+  GADVN    
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG--HKEVVKLLISKGADVNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
              TPL  A  +G  ++VK LI  GAD+N  +    + L  AA  G
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 114

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN +     TPL  A   G L+IV+ L+++GAD+N  ++Y  + 
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA    GHL +++ L+  GADVN       TPL  A YDG L+IV+ L+++GAD+N 
Sbjct: 84  LHLAADN--GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +     TPL  A   G L+IV+ L+++GAD+N  ++Y  + 
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA  G  HL +++ L+  GADVN       TPL  A YDG L+IV+ L+++GAD+N 
Sbjct: 84  LHLAADNG--HLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN +     TPL  A  +G+L+IV+ L+++GAD+N ++    + 
Sbjct: 16  AGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITP 75
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AAY   GHL +++ L+  GADVN   +   TPL  A   G+L+IV+ L++HGAD+N 
Sbjct: 76  LHLAAYD--GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            +    +   I+  +G   L+ I
Sbjct: 134 QDALGLTAFDISINQGQEDLAEI 156

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +     TPL  A  +G+L+IV+ L+++GAD+N ++    + 
Sbjct: 16  AGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITP 75
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AAY G  HL +++ L+  GADVN   +   TPL  A   G+L+IV+ L++HGAD+N 
Sbjct: 76  LHLAAYDG--HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 196 TNHYNNSCLMIAAYKG 211
            +    +   I+  +G
Sbjct: 134 QDALGLTAFDISINQG 149

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA +  GHL +++ L+ AGADVN   K   TPL  A  +G L+IV+ L++ GAD+N 
Sbjct: 84  LHLAARE--GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA +G  HL +++ L+ AGADVN   K   TPL  A  +G L+IV+ L++ GAD+N 
Sbjct: 84  LHLAAREG--HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 38  ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
           A  +G  D VK L+E+GAD+N ++    + L +AA  G  H  V+K L+  GAD N    
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG--HKEVVKLLLSQGADPNAKDS 68
Query: 98  TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
              TPL  A  +G  ++VK L+  GAD N  +    + L +AA    GH  V+K L+  G
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN--GHKEVVKLLLSQG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           AD N S     TPL  A   G  ++VK L + G 
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +G  D VK L+E+GAD+N ++    + L +AA  G  H  V+K L+  GAD N    
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG--HKEVVKLLLSQGADPNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
              TPL  A  +G  ++VK L+  GAD N  +    + L +AA  G
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG 114

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN    +  TPL  A ++G L+IV+ L+++GAD+N  +H   + 
Sbjct: 24  AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA    GHL +++ L+  GADVN +     TPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LRLAAL--FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN    +  TPL  A ++G L+IV+ L+++GAD+N  +H   + 
Sbjct: 24  AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA    GHL +++ L+  GADVN +     TPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LRLAAL--FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN S     TPL  A Y G L+IV+ L+++GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA +G  HL V++ L+  GADVN +     TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAADRG--HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN S     TPL  A Y G L+IV+ L+++GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA +G  HL V++ L+  GADVN +     TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAADRG--HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  + Y ++ L +AA    GHL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR--VGHLEIVEVLLKNGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
              + STPL  A   G L+IV+ L+++GAD+N  +   ++ L +AA    GHL +++ L+
Sbjct: 76  LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA--DTGHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L+++GAD+N  +   ++ 
Sbjct: 24  AGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA +G  HL +++ L+  GADVN      STPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAAKRG--HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N T+    + L +AA  G  HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HLEIVEVLLKHGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
                STPL  A   G L+IV+ L++HGAD+N  + + ++ L +AA    GHL +++ L+
Sbjct: 76  IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +  +  TPL  A   G L+IV+ L++HGAD+N  +   ++ 
Sbjct: 24  AGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA    GHL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAAL--IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN    T  TPL  A + G L+IV+ L+++GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA +  GHL +++ L+  GADVN S     TPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAARR--GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN    T  TPL  A + G L+IV+ L+++GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA +G  HL +++ L+  GADVN S     TPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAARRG--HLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N T+    + L +AA  G  HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HLEIVEVLLKHGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
                STPL  A   G L+IV+ L++HGAD+N  + + ++ L +AA    GHL +++ L+
Sbjct: 76  IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +  +  TPL  A   G L+IV+ L++HGAD+N  +   ++ 
Sbjct: 24  AGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA    GHL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAAL--IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N T++   + L +AA  G  HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNG--HLEIVEVLLKNGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
           S  T  TPL  A   G L+IV+ L++HGAD+N  ++  ++ L +AA    GHL +++ L+
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +     TPL  A  +G L+IV+ L+++GAD+N ++    + 
Sbjct: 24  AGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA    GHL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAA--ATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD N  +HY  + L +AA    GHL +++ L+  GADVN 
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAA--AVGHLEIVEVLLRNGADVNA 63
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
                +TPL  A   G L+IV+ L+++GAD+N  +    + L +AAY   GHL +++ L+
Sbjct: 64  VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW--GHLEIVEVLL 121
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +   G  D+ + L
Sbjct: 122 KHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GAD N       TPL  A   G L+IV+ L+ +GAD+N  +    + 
Sbjct: 12  AGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTP 71
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA    GHL +++ L+  GADVN    T  TPL  A Y G L+IV+ L++HGAD+N 
Sbjct: 72  LHLAA--SLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 196 TNHYNNSCLMIAAYKGIDVG 215
            + +  +   I+    ID+G
Sbjct: 130 QDKFGKTAFDIS----IDIG 145

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   GR D V+ L+ +GAD+N  +    + L +AAY   GHL +++ L+  GADVN 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY--WGHLEIVEVLLKNGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
                STPL  A + G L+IV+ L+++GAD+N  +    + L +AA +  GHL +++ L+
Sbjct: 76  YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +     TPL  A Y G L+IV+ L+++GAD+N  +   ++ 
Sbjct: 24  AGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA+   GHL +++ L+  GADVN       TPL  A   G L+IV+ L+++GAD+N 
Sbjct: 84  LHLAAH--FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISINNG 157

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 5/201 (2%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  +N  +    S
Sbjct: 17  SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 76
Query: 67  CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
            L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I   L+E GA+ +
Sbjct: 77  PLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             +HY  + +  AA KG  +L +I  L++  A  N      +TPL  AC + R++  K L
Sbjct: 135 AKDHYEATAMHRAAAKG--NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 187 IEHGADLNITNHYNNSCLMIA 207
           +  GA + I N    + L +A
Sbjct: 193 VSQGASIYIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
           S LM+     +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  
Sbjct: 7   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 66
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
           +N  +    S L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I  
Sbjct: 67  VNDKDDAGWSPLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 124
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
            L+E GA+ +  +HY  + +  AA KG
Sbjct: 125 MLLEGGANPDAKDHYEATAMHRAAAKG 151

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 5/201 (2%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  +N  +    S
Sbjct: 16  SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75
Query: 67  CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
            L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I   L+E GA+ +
Sbjct: 76  PLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             +HY  + +  AA KG  +L +I  L++  A  N      +TPL  AC + R++  K L
Sbjct: 134 AKDHYEATAMHRAAAKG--NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 187 IEHGADLNITNHYNNSCLMIA 207
           +  GA + I N    + L +A
Sbjct: 192 VSQGASIYIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
           S LM+     +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  
Sbjct: 6   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
           +N  +    S L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I  
Sbjct: 66  VNDKDDAGWSPLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
            L+E GA+ +  +HY  + +  AA KG
Sbjct: 124 MLLEGGANPDAKDHYEATAMHRAAAKG 150

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  + +  + L +    G  HL +I+ L+   ADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNG--HLEIIEVLLKYAADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
           S K+  TPL  A Y G L+IV+ L+++GAD+N  ++   + L +AA    GHL +++ L+
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADVN   K   T    +  +G  D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN +     TPL     +G L+I++ L+++ AD+N ++    + 
Sbjct: 24  AGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AAY+G  HL +++ L+  GADVN       TPL  A  DG L+IV+ L+++GAD+N 
Sbjct: 84  LHLAAYRG--HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN      STPL  A + G  +IV+ L++HGAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA  G  HL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAADNG--HLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
            + +  +   I+   G   L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN      STPL  A + G  +IV+ L++HGAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA  G  HL +++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N 
Sbjct: 84  LHLAADNG--HLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
            + +  +   I+   G
Sbjct: 142 QDKFGKTAFDISIDNG 157

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNI 59
           MI     +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  +N 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
            +    S L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I   L+
Sbjct: 69  KDDAGWSPLHIAA--SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           E GA+ +  +HY+ + +  AA KG  +L ++  L+   A  N      +TPL  AC + R
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKG--NLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIA 207
           ++  K+L+  GA + I N    + L +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
           S +MI     +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
           +N  +    S L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I  
Sbjct: 66  VNDKDDAGWSPLHIAA--SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
            L+E GA+ +  +HY+ + +  AA KG
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKG 150

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNI 59
           MI     +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  +N 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
            +    S L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I   L+
Sbjct: 69  KDDAGWSPLHIAA--SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           E GA+ +  +HY+ + +  AA K  G+L ++  L+   A  N      +TPL  AC + R
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAK--GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIA 207
           ++  K+L+  GA + I N    + L +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
           S +MI     +G L  +K  + A   +   T   S T L  AC  G  +IV++L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
           +N  +    S L IAA   AG   ++K L+  GA VN   +   TPL  A    R +I  
Sbjct: 66  VNDKDDAGWSPLHIAA--SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
            L+E GA+ +  +HY+ + +  AA KG
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKG 150

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 38  ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
           A  +G  D VK L+E+GAD N ++    + L  AA  G  H  ++K L+  GAD N    
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENG--HKEIVKLLLSKGADPNAKDS 68
Query: 98  TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
              TPL  A  +G  +IVK L+  GAD N  +    + L  AA    GH  ++K L+  G
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN--GHKEIVKLLLSKG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           AD N S     TPL  A   G  +IVK L + G 
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +G  D VK L+E+GAD N ++    + L  AA  G  H  ++K L+  GAD N    
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENG--HKEIVKLLLSKGADPNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
              TPL  A  +G  +IVK L+  GAD N  +    + L  AA  G
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 114

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 4/203 (1%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G + V + L+   A  N + K   TPL  A +   LDIVK L+  G   +       + L
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 216
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
            IAA +    + V ++L+  G   N  +    TPL  A  +G  ++V  L+   A+ N+ 
Sbjct: 217 HIAAKQN--QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
           N    + L + A +G  H+ V   L+  G  V+ +T+   TPL  A + G + +VK+L++
Sbjct: 275 NKSGLTPLHLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
           H AD+N       S L  AA +G
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQG 355

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
           TPL  A  +G L++VK L+E GAD+N  +    + L +AA    GHL V+K L+ AGADV
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADV 61
Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
           N   K   TPL  A  +G L++VK L+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           TPL  A  +G L++VK L+E GAD+N  +    + L +AA  G  HL V+K L+ AGADV
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           N   K   TPL  A  +G L++VK L+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
           GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N  +    + L
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 205 MIAAYKG 211
            +AA  G
Sbjct: 73  HLAARNG 79

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 11  LSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
           + +++ L+  GA+VN   +    TPL  A    R DIV+ L+ HGAD  +      +  +
Sbjct: 18  VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL 77
Query: 70  IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
           +AA   AG + ++K  +  GADVN       T    A   G++  +K+L + GA++N+  
Sbjct: 78  LAAI--AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 130 HYNN----------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACY-- 176
                         + LM AA K  GH+ V+K L+   GADVN         L  A    
Sbjct: 136 KTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 177 -DGRLD-IVKYLIEHGADLNITNHYNNSCLMIAAYK 210
            D  ++ I   L++HGAD+N+      + L++A  K
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +  +D+V+ L+E GA++N          +  A + +    +++ L+  GAD     K
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPVLRKK 70
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             +TP   A   G + ++K  +  GAD+N  + Y  +  M AA  G
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 11  LSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
           + +++ L+  GA+VN   +    TPL  A    R DIV+ L+ HGAD  +      +  +
Sbjct: 38  VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI 97
Query: 70  IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
           +AA   AG + ++K  +  GADVN       T    A   G++  +K+L + GA++N+  
Sbjct: 98  LAAI--AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 130 HYNN----------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACY-- 176
                         + LM AA K  GH+ V+K L+   GADVN         L  A    
Sbjct: 156 KTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 213
Query: 177 -DGRLD-IVKYLIEHGADLNITNHYNNSCLMIAAYK 210
            D  ++ I   L++HGAD+N+      + L++A  K
Sbjct: 214 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 98  TQSTPLRAACYDGRL----------DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
           T S+  RAA  D  L          D+V+ L+E GA++N          +  A + +   
Sbjct: 14  TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE- 72
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
            +++ L+  GAD     K  +TP   A   G + ++K  +  GAD+N  + Y  +  M A
Sbjct: 73  DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 132
Query: 208 AYKG 211
           A  G
Sbjct: 133 AVYG 136

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 20  AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
           +G  VN +++  S+PL  A   GR D++  L++HGA+    N      L +A  +G  H 
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG--HF 132
Query: 80  SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
            V+K L+ + A  N    + +TPL  AC  G  ++V  L++HGA +N +N+  N+ L  A
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192
Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
             +   H+ V++ L+  GA V    K Q T +  A  + ++
Sbjct: 193 VIE--KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           GHLS +K L+  GA VN  T    TPL  AC  G  D V  L++HGA +   +    S +
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPI 161
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
             AA +  GH+  + +L+  G +++H      TPL  AC + +   VK L+E GAD+N
Sbjct: 162 HEAARR--GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           GH   ++ L+  G  VN  T    +PL  AC  G L  VK L++H               
Sbjct: 70  GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--------------- 114
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
                               GA VN  T    TPL  AC  G  D V  L++HGA +   
Sbjct: 115 --------------------GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
           +    S +  AA +  GH+  + +L+  G +++H      TPL  AC + +   VK L+E
Sbjct: 155 SDL-ASPIHEAARR--GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 189 HGADLN 194
            GAD+N
Sbjct: 212 SGADVN 217

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           +P+  A   G    ++ LI  G  +NI    + S L  A     GHLS +K L+  GA V
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL--GGHLSCVKILLKHGAQV 118
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
           N  T    TPL  AC  G  D V  L++HGA + 
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           GHLS +K L+  GA VN  T    TPL  AC  G  D V  L++HGA +   +   +   
Sbjct: 47  GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP-- 104
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
            I      GH+  + +L+  G +++H      TPL  AC + +   VK L+E GAD+N
Sbjct: 105 -IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 75/186 (40%), Gaps = 38/186 (20%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           GH   ++ L+  G  VN  T    +PL  AC  G L  VK L++H               
Sbjct: 14  GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--------------- 58
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
                               GA VN  T    TPL  AC  G  D V  L++HGA +   
Sbjct: 59  --------------------GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
           +   +    I      GH+  + +L+  G +++H      TPL  AC + +   VK L+E
Sbjct: 99  SDLASP---IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 189 HGADLN 194
            GAD+N
Sbjct: 156 SGADVN 161

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           +P+  A   G    ++ LI  G  +NI    + S L  A     GHLS +K L+  GA V
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL--GGHLSCVKILLKHGAQV 62
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
           N  T    TPL  AC  G  D V  L++HGA + 
Sbjct: 63  NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L  +GAD+N  +++ ++ L +AA    GHL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAM--LGHLEIVEVLLKNGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
           +  T  TPL  A +   L+IV+ L++HGAD+N  + +  +   I+   G   L+ I
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           L  A   G+ D V+ L  +GAD+N  +++ ++ L +AA    GHL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAM--LGHLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           +  T  TPL  A +   L+IV+ L++HGAD+N  + +  +   I+   G
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N ++ +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
           L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N ++ +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N ++ +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
           L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N ++ +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 15  KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-ITNHYNNSCLMIAAY 73
           + LV AG DV    K   T L  A  + R+D+VKY I  GA ++ +    N++ L  A  
Sbjct: 26  RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85
Query: 74  KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
           +G  HLS++  L+  GAD +       + +  A   G   IV YLI  G D+++ +    
Sbjct: 86  QG--HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM 143
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLIEHGAD 192
           + LM AAY+    +   + L+     VN   K  ++T L  A   G   ++  L+E GA+
Sbjct: 144 TPLMWAAYR-THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 193 LNITNHYNNSCLMIAAYK 210
           ++  N    S L +A  +
Sbjct: 203 VDAQNIKGESALDLAKQR 220

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 34/129 (26%)
Query: 83  KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 142
           + LV AG DV    K   T L  A  + R+D+VKY I  GA                   
Sbjct: 26  RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA------------------- 66
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
                 ++  L   G D+N      STPL  A   G L +V  L+++GAD ++ +    S
Sbjct: 67  ------IVDQL---GGDLN------STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 203 CLMIAAYKG 211
           C+ +AA  G
Sbjct: 112 CIHLAAQFG 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N  + +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
           L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN       TPL  A   G L+IV+ L++HGAD+N  + +  + 
Sbjct: 24  AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  +   N+ L +AA     HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAA--DYDHLEIVEVLLKHGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
                STPL  A   G L+IV+ L++HGAD+N  + +  +   I+   G   L+ I
Sbjct: 76  HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           L  A   G+ D V+ L+ +GAD+N  +   N+ L +AA     HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAA--DYDHLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
                STPL  A   G L+IV+ L++HGAD+N  + +  +   I+   G
Sbjct: 76  HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 31/227 (13%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           +G    +  L+  GAD+N++     T L  AC D  +D+VK+L+E+GA++N  +  N   
Sbjct: 50  SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD--NEGW 107
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD------------------ 109
           + + A    G+L + + L+  GA V        TPL  A  +                  
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 110 -GRLDIVKYLIEHGADLNITNHYNN--------SCLMIAAYKGAGHLSVIKTLVHAGADV 160
             R +  + ++        + H N+        + L +AA K  G+  V+K L+ A  DV
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK--GYTEVLKLLIQARYDV 225
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
           N       TPL AA + G+ +  + L+E+  D+   N    +   +A
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GAD+N  + Y  + L +A   G  HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLEIVEVLLKNGADVNA 75
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
                 TPL  A + G L+I + L++HGAD+N  + +  +   I+   G   L+ I
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           L  A   G+ D V+ L+ +GAD+N  + Y  + L +A   G  HL +++ L+  GADVN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
                 TPL  A + G L+I + L++HGAD+N  + +  +   I+   G
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 28  TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 87
           +K  +TPL  A  +G  + VK L+  GAD+N  +   N+ L +AA    GH  ++K L+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAEIVKLLLA 63
Query: 88  AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
            GADVN  +K  +TP   A  +G  +IVK L   GAD+N
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 96  TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 155
           +K  +TPL  A  +G  + VK L+  GAD+N  +   N+ L +AA  G  H  ++K L+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAEIVKLLLA 63
Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
            GADVN  +K  +TP   A  +G  +IVK L   GAD+N
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
           GH   +K L+  GADVN  +K  +TPL  A  +G  +IVK L+  GAD+N  +   N+  
Sbjct: 20  GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Query: 205 MIAAYKG 211
            +A   G
Sbjct: 80  HLAKKNG 86

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN   +   TPL  A   G L+IV+ L+++GAD+N  +++  + 
Sbjct: 24  AGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITP 83
Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
           L +AA +  GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAIR--GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN   +   TPL  A   G L+IV+ L+++GAD+N  +++  + 
Sbjct: 24  AGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L +AA +G  HL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLAAIRG--HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 23  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 82
           D+N       +PL  AC +GR  +V+ LI  GA +N+ N  +++ L +AA    GH  ++
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 83
Query: 83  KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
           + L+   AD+N   +  + PL  AC+ G+  + + L+ +GA ++I N Y
Sbjct: 84  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 132

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
           D+N       +PL  AC +GR  +V+ LI  GA +N+ N  +++ L +AA    GH  ++
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 83
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 199
           + L+   AD+N   +  + PL  AC+ G+  + + L+ +GA ++I N Y
Sbjct: 84  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 132

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 23  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 82
           D+N       +PL  AC +GR  +V+ LI  GA +N+ N  +++ L +AA    GH  ++
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 88
Query: 83  KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
           + L+   AD+N   +  + PL  AC+ G+  + + L+ +GA ++I N Y
Sbjct: 89  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
           D+N       +PL  AC +GR  +V+ LI  GA +N+ N  +++ L +AA    GH  ++
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 88
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 199
           + L+   AD+N   +  + PL  AC+ G+  + + L+ +GA ++I N Y
Sbjct: 89  QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 35  LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
           L  A   G+ D V+ L+ +GA    T+    S L +AA  G  H S  + L+ AG   + 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSRDA 62
Query: 95  STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
            TK   TPL  A  +G  +IV+ L++HGAD+N  +    + L  A      H  V++ L+
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVELLI 120
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             GADV+  +K   T    +  +G  D+ + L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           L  A   G+ D V+ L+ +GA    T+    S L +AA  G  H S  + L+ AG   + 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSRDA 62
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
            TK   TPL  A  +G  +IV+ L++HGAD+N  +    + L  A
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +      S L
Sbjct: 14  GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
            +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+E GAD  I 
Sbjct: 74  SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 129 NH--YNNSCLMIA 139
               YN+  L +A
Sbjct: 132 TDSGYNSMDLAVA 144

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           G +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +      S L
Sbjct: 14  GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
            +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+E GAD  I 
Sbjct: 74  SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 197 NH--YNNSCLMIA 207
               YN+  L +A
Sbjct: 132 TDSGYNSMDLAVA 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +      S L
Sbjct: 12  GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
            +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+E GAD  I 
Sbjct: 72  SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 129 NH--YNNSCLMIA 139
               YN+  L +A
Sbjct: 130 TDSGYNSMDLAVA 142

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           G +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +      S L
Sbjct: 12  GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
            +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+E GAD  I 
Sbjct: 72  SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 197 NH--YNNSCLMIA 207
               YN+  L +A
Sbjct: 130 TDSGYNSMDLAVA 142

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +      S L
Sbjct: 30  GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
            +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+E GAD  I 
Sbjct: 90  SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 129 NH--YNNSCLMIA 139
               YN+  L +A
Sbjct: 148 TDSGYNSMDLAVA 160

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           G +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +      S L
Sbjct: 30  GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
            +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+E GAD  I 
Sbjct: 90  SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 197 NH--YNNSCLMIA 207
               YN+  L +A
Sbjct: 148 TDSGYNSMDLAVA 160

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADVN   K   TPL  A  +  L+IV+ L+++GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETP 83
Query: 68  L-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
           L ++A Y   GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLVAMY---GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN   K   TPL  A  +  L+IV+ L+++GAD+N  +    + 
Sbjct: 24  AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETP 83
Query: 136 L-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L ++A Y   GHL +++ L+  GADVN   K   T    +  +G  D+ + L
Sbjct: 84  LHLVAMY---GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 106/271 (39%), Gaps = 67/271 (24%)
Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           ++ A +      ++  L     + + S   +STPL  A    R+ IV+ L++HGAD++  
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 61  NH-----YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
           +       +N+C    +Y   GH  V + L+  GA VN     Q TPL  A    R+++ 
Sbjct: 88  DKGGLVPLHNAC----SY---GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 116 KYLIEHGADLNITNHYNNSCLMIAA---------YKGAGH-------------------L 147
             L+ HGAD  + N +  S + +A          Y+  GH                   L
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 148 SVI---------------------------KTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
            +I                           + L+  GA+VN   K   TPL  A      
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           D+++ L +HGA +N  +    + L  AA  G
Sbjct: 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAG 291

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLM 69
           + + K L+  GAD+N       +P   A   GR +I+ Y+++H   DLN  N Y  + L+
Sbjct: 52  IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI 111
Query: 70  IAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAAC--YDGR---LDIVKYLIEHGA 123
            AA K  GH+  +K L+  G  D++       T L  A    +G     DIVK L+E+GA
Sbjct: 112 PAAEK--GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 124 DLNITNHYNNSCLMIAAYKGAGHLSVI 150
           D +I ++   + +  A  KG   +S I
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKI 196

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 32  STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
           +TPL  A ++  ++I K LI+ GAD+N+ N  ++S  + A  +G   + +   L HA  D
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI-LAYMLKHATPD 98
Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAG---HL 147
           +N   +     L  A   G +D VK L+E G  D++  N +  + L+ A     G   + 
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
            ++K L+  GAD +    +  T +  A   G  +I K L ++
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
           N+      TPL  AC  G  + +  L+E+   L        S  +I A K    L + + 
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKN-NRLGIAEK 86
Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
           L+  G++VN    +  TPL  +   G  ++  +L+EHGA++N  N    + L++A+  G 
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
               ++K L+  GAD++    T  T   +A   GR +++K   E
Sbjct: 147 SE--IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           N+      TPL  AC  G  + +  L+E+   L        S  +I A K    L + + 
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKN-NRLGIAEK 86
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           L+  G++VN    +  TPL  +   G  ++  +L+EHGA++N  N    + L++A+  G
Sbjct: 87  LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 31  QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 85
           QSTPL  A    R+ +V+YL++HGAD++  +       +N+C    +Y   GH  V + L
Sbjct: 46  QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 98
Query: 86  VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           V  GA VN +   + TPL  A   G+ +I K L++HGAD    N   N+ L
Sbjct: 99  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 99  QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 153
           QSTPL  A    R+ +V+YL++HGAD++  +       +N+C    +Y   GH  V + L
Sbjct: 46  QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 98
Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
           V  GA VN +   + TPL  A   G+ +I K L++HGAD    N   N+ L
Sbjct: 99  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 31  QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 85
           QSTPL  A    R+ +V+YL++HGAD++  +       +N+C    +Y   GH  V + L
Sbjct: 44  QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 96
Query: 86  VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           V  GA VN +   + TPL  A   G+ +I K L++HGAD    N   N+ L
Sbjct: 97  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 99  QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 153
           QSTPL  A    R+ +V+YL++HGAD++  +       +N+C    +Y   GH  V + L
Sbjct: 44  QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 96
Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
           V  GA VN +   + TPL  A   G+ +I K L++HGAD    N   N+ L
Sbjct: 97  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 31  QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 85
           QSTPL  A    R+ +V+YL++HGAD++  +       +N+C    +Y   GH  V + L
Sbjct: 42  QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 94
Query: 86  VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           V  GA VN +   + TPL  A   G+ +I K L++HGAD    N   N+ L
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 99  QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 153
           QSTPL  A    R+ +V+YL++HGAD++  +       +N+C    +Y   GH  V + L
Sbjct: 42  QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 94
Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
           V  GA VN +   + TPL  A   G+ +I K L++HGAD    N   N+ L
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Query: 15  KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL-MIAAY 73
           K  + AGADVN     ++TPL  A    R  +V YL + GAD  I N    S L   AA 
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 74  KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV---KYLIEHGADLNITNH 130
           +  G             D+    +   T L    ++   D V   K L+E GA ++    
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD---- 265
Query: 131 YNNSCLMIAA-YKG------AGHLS---VIKTLV-HAGADVNHSTKTQSTPLRAACYDGR 179
           Y+ +    +  YKG      A  +S   ++K LV   G++ +   +   TP+  A  +GR
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIA 207
           +++V YLI+ GA +   +  +++   +A
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLA 353

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 45/226 (19%)
Query: 33  TPLRAACYDGRLDIVKYLI----EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 88
           TPL  A   G L  V  L+    + G +L+I N+   + L +A        SV++ LV A
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP--SVVRLLVTA 68
Query: 89  GAD---------------VNHSTKT-------QSTP----LRAACYDGRL---------- 112
           GA                  H + T        + P    L A  YDG            
Sbjct: 69  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 113 -DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
            + V+ L+E GAD++  +  +    +I A +    LS+++ L+  GA+VN    + S+ L
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGIDVGR 216
            +A   G L +V+ L+  GAD ++ N +N++ LM+A + + ID+ R
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 59  ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
            TNH   + L IA+ KG   +  ++ L+  G+D N       TPL  AC  G L +V+ L
Sbjct: 5   FTNHRGETLLHIASIKGD--IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 119 IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161
           ++H A +N T + N+S L  AA    GH+ ++K L+  GA  N
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKN--GHVDIVKLLLSYGASRN 103

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
            T L  A   G +  V+YL+++G+D N+ +H   + L  A     GHL V++ L+   A 
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC--NHGHLKVVELLLQHKAL 68
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
           VN +     +PL  A  +G +DIVK L+ +GA  N  N
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 6/201 (2%)
Query: 12  SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           +VI   ++ GA + N + +T  T L  A    R D  K L+E  AD NI ++   + L  
Sbjct: 38  AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 71  AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
           A    A    V + L+   A D++      +TPL  A       +++ LI   AD+N  +
Sbjct: 98  AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 155
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
               S L  AA      +     L+  GA+ +     + TPL  A  +G  +  K L++H
Sbjct: 156 DLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
Query: 190 GADLNITNHYNNSCLMIAAYK 210
            A+ +IT+H +     IA  +
Sbjct: 214 FANRDITDHMDRLPRDIAQER 234

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 6/201 (2%)
Query: 12  SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           +VI   ++ GA + N + +T  T L  A    R D  K L+E  AD NI ++   + L  
Sbjct: 37  AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 71  AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
           A    A    V + L+   A D++      +TPL  A       +++ LI   AD+N  +
Sbjct: 97  AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
               S L  AA      +     L+  GA+ +     + TPL  A  +G  +  K L++H
Sbjct: 155 DLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Query: 190 GADLNITNHYNNSCLMIAAYK 210
            A+ +IT+H +     IA  +
Sbjct: 213 FANRDITDHMDRLPRDIAQER 233

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 9  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
          G L  +K  V  G DVN + +    PL  A   G+L+I+++L+  GAD+N  + ++ + L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 69 MIAAYKGAGHLSVIKTLVHAGAD 91
          + A Y+  GH+S +K L+  GAD
Sbjct: 78 LSAVYE--GHVSCVKLLLSKGAD 98

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           G L  +K  V  G DVN + +    PL  A   G+L+I+++L+  GAD+N  + ++ + L
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 137 MIAAYKGAGHLSVIKTLVHAGAD 159
           + A Y+  GH+S +K L+  GAD
Sbjct: 78  LSAVYE--GHVSCVKLLLSKGAD 98

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +G LD VK  +  G D+N T       L  AA    G L +++ L+  GAD+N   K
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLKGADINAPDK 71
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
              TPL +A Y+G +  VK L+  GAD  +
Sbjct: 72  HHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 6/201 (2%)
Query: 12  SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           +VI   ++ GA + N + +T +T L  A    R D  K L+E  AD NI ++   + L  
Sbjct: 37  AVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 71  AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
           A    A    V + L+   A D++      +TPL  A       +++ LI   AD+N  +
Sbjct: 97  AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
               S L  AA      +     L+  GA+ +     + TPL  A  +G  +  K L++H
Sbjct: 155 DLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Query: 190 GADLNITNHYNNSCLMIAAYK 210
            A+ +IT+H +     IA  +
Sbjct: 213 FANRDITDHMDRLPRDIAQER 233

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 9  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
          G L  +K  V  G DVN + +    PL  A   G+L+I+++L+  GAD+N  + ++ + L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 69 MIAAYKGAGHLSVIKTLVHAGAD 91
          + A Y+  GH+S +K L+  GAD
Sbjct: 73 LSAVYE--GHVSCVKLLLSKGAD 93

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           G L  +K  V  G DVN + +    PL  A   G+L+I+++L+  GAD+N  + ++ + L
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 137 MIAAYKGAGHLSVIKTLVHAGAD 159
           + A Y+  GH+S +K L+  GAD
Sbjct: 73  LSAVYE--GHVSCVKLLLSKGAD 93

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A  +G LD VK  +  G D+N T       L  AA    G L +++ L+  GAD+N   K
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLKGADINAPDK 66
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
              TPL +A Y+G +  VK L+  GAD  +
Sbjct: 67  HHITPLLSAVYEGHVSCVKLLLSKGADKTV 96

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 6/201 (2%)
Query: 12  SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           +VI   ++ GA + N + +T  T L  A    R D  K L+E  AD NI ++   + L  
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 71  AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
           A    A    V + L+   A D++      +TPL  A       +++ LI   AD+N  +
Sbjct: 65  AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
               S L  AA            L+  GA+ +     + TPL  A  +G  +  K L++H
Sbjct: 123 DLGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Query: 190 GADLNITNHYNNSCLMIAAYK 210
            A+ +IT+H +     IA  +
Sbjct: 181 FANRDITDHMDRLPRDIAQER 201

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N +  + L +  +   G  ++   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 33  NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HGAD+N+ +      + +A  +  GH +V+  L  A +D++       TPL  A   G  
Sbjct: 90  HGADVNVPDGTGALPIHLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ 146
Query: 181 DIVKYLIEH 189
           D+V  L  H
Sbjct: 147 DLVDILQGH 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
           N +  + L +  +   G  ++   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 33  NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
           HGAD+N+ +      + +A  +G
Sbjct: 90  HGADVNVPDGTGALPIHLAVQEG 112

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N +  + L +  +   G  ++   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 39  NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 95
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HGAD+N+ +      + +A  +  GH +V+  L  A +D++       TPL  A   G  
Sbjct: 96  HGADVNVPDGTGALPIHLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ 152
Query: 181 DIVKYLIEH 189
           D+V  L  H
Sbjct: 153 DLVDILQGH 161

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
           N +  + L +  +   G  ++   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 39  NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 95
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
           HGAD+N+ +      + +A  +G
Sbjct: 96  HGADVNVPDGTGALPIHLAVQEG 118

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 4/200 (2%)
Query: 12  SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           SVI   ++ GA + N + +T  T L  A    R D  K L+E  AD  I ++   + L  
Sbjct: 2   SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 71  AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
           A    A  +  I  L +   D++      +TPL  A       +++ LI   AD+N  + 
Sbjct: 62  AVSADAQGVFQI-LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD 120
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190
              S L  AA            L+  GA+ +     + TPL  A  +G  +  K L++H 
Sbjct: 121 LGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 178
Query: 191 ADLNITNHYNNSCLMIAAYK 210
           A+ +IT+H +     IA  +
Sbjct: 179 ANRDITDHMDRLPRDIAQER 198

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 8  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
          AG    ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+N  + +  + 
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 68 LMIAAYKGAGHLSVI 82
            I+   G   L+ I
Sbjct: 76 FDISIDNGNEDLAEI 90

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+N  + +  + 
Sbjct: 16  AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 136 LMIAAYKGAGHLSVI 150
             I+   G   L+ I
Sbjct: 76  FDISIDNGNEDLAEI 90

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
           AG    ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+N  + +  + 
Sbjct: 16  AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 204 LMIAAYKG 211
             I+   G
Sbjct: 76  FDISIDNG 83

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N +  + L +  +   G  +V   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 41  NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HGAD+N  +   +  + +A  +  GH SV+  L    +D++H   +  TPL  A   G  
Sbjct: 98  HGADVNALDSTGSLPIHLAIRE--GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQ 154
Query: 181 DIVKYLIEH 189
           +++  L  H
Sbjct: 155 NLMDILQGH 163

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
           N +  + L +  +   G  +V   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 41  NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
           HGAD+N  +   +  + +A  +G
Sbjct: 98  HGADVNALDSTGSLPIHLAIREG 120

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N +  + L +  +   G  +V   L+  GA  N    + ++P+  A   G LD +K L+E
Sbjct: 39  NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 95
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HGAD+N  +   +  + +A  +  GH SV+  L    +D++H   +  TPL  A   G  
Sbjct: 96  HGADVNALDSTGSLPIHLAIRE--GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQ 152
Query: 181 DIVKYLIEH 189
           +++  L  H
Sbjct: 153 NLMDILQGH 161

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 17  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKG 75
           L+ AGAD N    T  TPL AA     + + + L+ + A +LN   H   + L++AA   
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
                +++ L+ A AD+N +  +  T L  A      + V  L+ H A+ +  +  + + 
Sbjct: 130 IE--GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP 187
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
           L +AA +G+   S  K L+   A+   +      P   A      DIV+ L EH
Sbjct: 188 LFLAAREGSYEAS--KALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 239

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 67  CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
            L I      G L  +K  +  G + VN   +   TPL  A   G ++ V++L+E GAD 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185
           +I      S L +A+    G+  ++  L+    D+N       TPL  A +   +  V+ 
Sbjct: 63  HILAKERESALSLAST--GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 186 LIEHGADL 193
           L+  GADL
Sbjct: 121 LLARGADL 128

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 42  GRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 100
           G LD +K  +  G +L N  +    + L+ A+    G +  ++ L+  GAD +   K + 
Sbjct: 13  GELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEWGADPHILAKERE 70
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           + L  A   G  DIV  L+E   D+NI + +N    ++ A +G  H+  ++ L+  GAD+
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRG-NHVKCVEALLARGADL 128
Query: 161 NHSTKTQSTPLRAAC 175
                +  TP+  A 
Sbjct: 129 TTEADSGYTPMDLAV 143

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 8  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
          AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  + +  + 
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 71
Query: 68 LMIAAYKGAGHLSVI 82
            I+   G   L+ I
Sbjct: 72 FDISIDNGNEDLAEI 86

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  + +  + 
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 71
Query: 136 LMIAAYKGAGHLSVI 150
             I+   G   L+ I
Sbjct: 72  FDISIDNGNEDLAEI 86

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
           AG    ++ L+  GADVN   K   TPL  A  +G L+IV+ L++ GAD+N  + +  + 
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 71
Query: 204 LMIAAYKG 211
             I+   G
Sbjct: 72  FDISIDNG 79

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           AG    ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+   + +  + 
Sbjct: 34  AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 68  LMIAAYKGAGHLSVI 82
             I+   G   L+ I
Sbjct: 94  FDISIDNGNEDLAEI 108

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
           AG    ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+   + +  + 
Sbjct: 34  AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 136 LMIAAYKGAGHLSVI 150
             I+   G   L+ I
Sbjct: 94  FDISIDNGNEDLAEI 108

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
           AG    ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+   + +  + 
Sbjct: 34  AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 204 LMIAAYKG 211
             I+   G
Sbjct: 94  FDISIDNG 101

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9   GHLSVIKTLVHA--GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           G+L V+K+L       D+N  T    T L  A      ++ ++LIE+GA + I + +N  
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 67  CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGAD 124
            L  AA    G L +I+ L   G   VN   K   TPL  A  +G  D    L+E +GA+
Sbjct: 143 PLHRAA--SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 125 LNITNH 130
            ++ ++
Sbjct: 201 YDLVDN 206

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 34  PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
           PL  AC +     V+ L+     L +    +    +  +     H  +   L+    +VN
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVN 63
Query: 94  ---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLS 148
              +   +  TP   AC  G L++VK L +     DLN   +   +CL +A   G     
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFE 121
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           V + L+  GA V    K    PL  A   G L +++ L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9   GHLSVIKTLVHA--GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           G+L V+K+L       D+N  T    T L  A      ++ ++LIE+GA + I + +N  
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 67  CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGAD 124
            L  AA    G L +I+ L   G   VN   K   TPL  A  +G  D    L+E +GA+
Sbjct: 143 PLHRAA--SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 125 LNITNH 130
            ++ ++
Sbjct: 201 YDLVDN 206

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 34  PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
           PL  AC +     V+ L+     L +    +    +  +     H  +   L+    +VN
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVN 63
Query: 94  ---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLS 148
              +   +  TP   AC  G L++VK L +     DLN   +   +CL +A   G     
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFE 121
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           V + L+  GA V    K    PL  A   G L +++ L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9   GHLSVIKTLVHA--GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           G+L V+K+L       D+N  T    T L  A      ++ ++LIE+GA + I + +N  
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 67  CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGAD 124
            L  AA    G L +I+ L   G   VN   K   TPL  A  +G  D    L+E +GA+
Sbjct: 143 PLHRAA--SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 125 LNITNH 130
            ++ ++
Sbjct: 201 YDLVDN 206

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 34  PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
           PL  AC +     V+ L+     L +    +    +  +     H  +   L+    +VN
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVN 63
Query: 94  ---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLS 148
              +   +  TP   AC  G L++VK L +     DLN   +   +CL +A   G     
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFE 121
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           V + L+  GA V    K    PL  A   G L +++ L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 42  GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
           G  +I + L+  GA+ ++ +   N+ +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
           G  +I + L+  GA+ ++ +   N+ +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 24  VNHSTKTQSTPLRAA-----CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 78
           + H  + +  PL  A       +G  D+V+ +I    D ++ N    + L  A    AGH
Sbjct: 25  IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGH 82
Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
             ++K LV  G +VN +     TPL  A     + + K+L+E GA
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 92  VNHSTKTQSTPLRAA-----CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 146
           + H  + +  PL  A       +G  D+V+ +I    D ++ N    + L  A    AGH
Sbjct: 25  IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGH 82
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
             ++K LV  G +VN +     TPL  A     + + K+L+E GA
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 24  VNHSTKTQSTPLRA---ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
           + H  + +  PL     +  +G  D+V+ +I    D ++ N    + L  A    AGH  
Sbjct: 27  IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGHTE 84
Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
           ++K LV  G +VN +     TPL  A     + + K+L+E GA
Sbjct: 85  IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 92  VNHSTKTQSTPLRA---ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
           + H  + +  PL     +  +G  D+V+ +I    D ++ N    + L  A    AGH  
Sbjct: 27  IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGHTE 84
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           ++K LV  G +VN +     TPL  A     + + K+L+E GA
Sbjct: 85  IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           + VI+ +    A +N     Q TPL  A    + +I + L+  G D  + +   N+ L +
Sbjct: 22  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
Query: 71  AAYKG----AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
           A  +G     G L+   T  H  + +  +     T L  A   G L IV+ L+  GAD+N
Sbjct: 82  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 127 ITNHYNNSCLMIAAYKGAGHLSV-------IKTLVHAGADVNHSTKTQSTP 170
                N         + A HL+V       +  L+  GADVN  T    +P
Sbjct: 142 AQEPCNG--------RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42  GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42  GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42  GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42  GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
           G  +I + L+  GA+ ++ +    + +  AA   AG L  ++TL+   ADVN      + 
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
           PL  A  +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 11  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           + VI+ +    A +N     Q TPL  A    + +I + L+  G D  + +   N+ L +
Sbjct: 25  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 71  AAYKG----AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
           A  +G     G L+   T  H  + +  +     T L  A   G L IV+ L+  GAD+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 127 ITNHYNNSCLMIAAYKGAGHLSV-------IKTLVHAGADVNHSTKTQSTP 170
                N         + A HL+V       +  L+  GADVN  T    +P
Sbjct: 145 AQEPCNG--------RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-67
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-67
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-66
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-63
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-59
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-51
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-56
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-55
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-64
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-57
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-56
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-62
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-57
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-54
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-61
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-59
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-55
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-51
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-58
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-56
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-54
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-56
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-51
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-45
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-56
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-51
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-50
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-56
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-51
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-33
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-56
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-50
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-55
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-54
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-48
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-46
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-46
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-55
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-52
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-47
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-54
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-51
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-50
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-54
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-46
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-44
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-54
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-52
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-53
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-44
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-53
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-51
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-38
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-53
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-51
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-51
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-41
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-48
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-46
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-50
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-50
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-47
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-50
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-43
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-49
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-48
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-43
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-48
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-46
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-47
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-47
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-40
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-46
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-42
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-44
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-38
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-44
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-44
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-41
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-43
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-38
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-43
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-38
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-43
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-42
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-36
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-27
2rfa_A	232	Transient receptor potential cation channel subfa	2e-41
2rfa_A	232	Transient receptor potential cation channel subfa	4e-31
2rfa_A	232	Transient receptor potential cation channel subfa	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-40
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-40
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-38
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-33
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-37
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-34
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-34
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-36
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-35
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-34
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	3e-34
2etb_A	256	Transient receptor potential cation channel subfam	3e-25
2etb_A	256	Transient receptor potential cation channel subfam	1e-18
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2pnn_A	273	Transient receptor potential cation channel subfa	9e-33
2pnn_A	273	Transient receptor potential cation channel subfa	8e-26
2pnn_A	273	Transient receptor potential cation channel subfa	5e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-29
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-22
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-06

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  212 bits (543), Expect = 3e-67
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 6/211 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +AA  G  H  V K L+   A VN   K   TPL  A   G  ++VK L+E+ A+ N+ 
Sbjct: 52  HMAARAG--HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
               ++ L IAA +  GH+  +  L+   A     TK   TPL  A   G++ + + L+E
Sbjct: 110 TTAGHTPLHIAARE--GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
             A  N       + L +A +    +L ++K L+  G   +       TPL  A    ++
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHH--NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225

Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           ++ + L+++G   N  +    + L +AA +G
Sbjct: 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEG 256

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  212 bits (543), Expect = 3e-67
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +A +    +L ++K L+  G   +       TPL  A    ++++ + L+++G   N  
Sbjct: 184 HVAVHHN--NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +    + L +AA +G  H  ++  L+   A+ N   K+  TPL     +G + +   LI+
Sbjct: 242 SVQGVTPLHLAAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HG  ++ T     + L +A++ G  ++ ++K L+   ADVN  TK   +PL  A   G  
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYG--NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357

Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           DIV  L+++GA  N  +    + L IA   G
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  210 bits (538), Expect = 1e-66
 Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +A++ G  HL ++K L+  GA  N S     TPL  A   G  ++ KYL+++ A +N  
Sbjct: 19  HVASFMG--HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
              + + L  AA    GH +++K L+   A+ N +T    TPL  A  +G ++ V  L+E
Sbjct: 77  AKDDQTPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
             A          + L +AA    G + V + L+   A  N + K   TPL  A +   L
Sbjct: 135 KEASQACMTKKGFTPLHVAAKY--GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192

Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           DIVK L+  G   +       + L IAA + 
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  202 bits (516), Expect = 3e-63
 Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 4/191 (2%)

Query: 21  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
           G       ++  TPL  A + G L IVK L++ GA  N++N    + L +AA    GH  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTE 61

Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
           V K L+   A VN   K   TPL  A   G  ++VK L+E+ A+ N+     ++ L IAA
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

Query: 141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200
            +  GH+  +  L+   A     TK   TPL  A   G++ + + L+E  A  N      
Sbjct: 122 RE--GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 201 NSCLMIAAYKG 211
            + L +A +  
Sbjct: 180 LTPLHVAVHHN 190

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  192 bits (491), Expect = 2e-59
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 9/212 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            IAA +    + V ++L+  G   N  +    TPL  A  +G  ++V  L+   A+ N+ 
Sbjct: 217 HIAAKQN--QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N    + L + A +G  H+ V   L+  G  V+ +T+   TPL  A + G + +VK+L++
Sbjct: 275 NKSGLTPLHLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           H AD+N       S L  AA +G  H  ++  L+  GA  N  +   +TPL  A   G +
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQG--HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390

Query: 181 DIVKYL---IEHGADLNITNHYNNSCLMIAAY 209
            +   L    +  + + +++ +  S       
Sbjct: 391 SVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 422

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  170 bits (433), Expect = 6e-51
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 18/197 (9%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +AA +G  H  ++  L+   A+ N   K+  TPL     +G + +   LI+HG  ++ T
Sbjct: 250 HLAAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
                + L +A++ G  ++ ++K L+   ADVN  TK   +PL  A   G  DIV  L++
Sbjct: 308 TRMGYTPLHVASHYG--NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA---GADVNHSTKTQSTPLRAACYD 177
           +GA  N  +    + L IA     G++SV   L       + V  S K + +        
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRL--GYISVTDVLKVVTDETSFVLVSDKHRMSF------- 416

Query: 178 GRLDIVKYLIEHGADLN 194
              + V  +++   D  
Sbjct: 417 --PETVDEILDVSEDEG 431

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (404), Expect = 1e-46
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 53  HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 112
            G           + L +A++   GHL ++K L+  GA  N S     TPL  A   G  
Sbjct: 3   PGISGGGGGESGLTPLHVASFM--GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 172
           ++ KYL+++ A +N     + + L  AA    GH +++K L+   A+ N +T    TPL 
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLH 118

Query: 173 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            A  +G ++ V  L+E  A          + L +AA  G
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  135 bits (343), Expect = 9e-38
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 18/165 (10%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            + A +G  H+ V   L+  G  V+ +T+   TPL  A + G + +VK+L++H AD+N  
Sbjct: 283 HLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL-- 118
                S L  AA +G  H  ++  L+  GA  N  +   +TPL  A   G + +   L  
Sbjct: 341 TKLGYSPLHQAAQQG--HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398

Query: 119 -IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
             +  + + +++ +                  +  ++    D   
Sbjct: 399 VTDETSFVLVSDKH-----------RMSFPETVDEILDVSEDEGE 432

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  200 bits (512), Expect = 5e-65
 Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 7/212 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA  G  H+ +   LV AGA+++  ++ Q TPL  A  +  L+ VKYLI+ GA ++  
Sbjct: 16  HAAAEAG--HVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           +   ++CL +AA K  GH  V++ L+  G  DVN       TP+  A     +D+VK L+
Sbjct: 74  DAEGSTCLHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
             G+D+NI ++  N CL  AA+   G + + + L+ A  D++       +PL  A  + R
Sbjct: 132 SKGSDINIRDNEENICLHWAAFS--GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189

Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            D V   +   +D+ + N    + L  A+   
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  178 bits (454), Expect = 3e-56
 Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 5/191 (2%)

Query: 22  ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81
            +     + + +PL AA   G +DI   L++ GA+++  +    + LM AA     HL  
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLEA 59

Query: 82  IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAA 140
           +K L+ AGA V+      ST L  A   G  ++V+YL+ +G  D+N  +    + ++ A 
Sbjct: 60  VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200
                H+ ++K L+  G+D+N     ++  L  A + G +DI + L+    DL+  N + 
Sbjct: 120 EY--KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 201 NSCLMIAAYKG 211
           +S L IAA + 
Sbjct: 178 DSPLHIAAREN 188

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  176 bits (450), Expect = 1e-55
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 59
           M AA     HL  +K L+ AGA V+      ST L  A   G  ++V+YL+ +G  D+N 
Sbjct: 49  MEAAENN--HLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
            +    + ++ A      H+ ++K L+  G+D+N     ++  L  A + G +DI + L+
Sbjct: 107 QDDGGWTPMIWATEYK--HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
               DL+  N + +S L IAA +       +   +   +DV    K   TPL+ A  + +
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAAREN--RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222

Query: 180 LDIVKYLIEHGAD 192
           +     + +   D
Sbjct: 223 VWSALQMSKALQD 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  198 bits (506), Expect = 5e-64
 Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 7/213 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + A   G       + LV AG DV    K   T L  A  + R+D+VKY I  GA ++  
Sbjct: 14  VKATQYG--IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71

Query: 61  -NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
               N++ L  A  +  GHLS++  L+  GAD +       + +  A   G   IV YLI
Sbjct: 72  GGDLNSTPLHWATRQ--GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDG 178
             G D+++ +    + LM AAY+    +   + L+     VN   K   +T L  A   G
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRT-HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 179 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
              ++  L+E GA+++  N    S L +A  + 
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  180 bits (459), Expect = 6e-57
 Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 9/200 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
             AA      + ++K  +  GA V+       STPL  A   G L +V  L+++GAD ++
Sbjct: 47  HWAAINN--RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYL 118
            +    SC+ +AA  G  H S++  L+  G DV+   +   TPL  A Y    +D  + L
Sbjct: 105 IDGEGCSCIHLAAQFG--HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

Query: 119 IEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
           +     +N+ + Y+ N+ L  A   G  + +VI  L+ AGA+V+       + L  A   
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAG--NTTVISLLLEAGANVDAQNIKGESALDLAKQR 220

Query: 178 GRLDIVKYLIEHGADLNITN 197
             + ++ +L E        N
Sbjct: 221 KNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  177 bits (452), Expect = 7e-56
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
           + H     +  +  A   G  +  + L+E G D+   +  N + L  AA      + ++K
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN--NRIDLVK 59

Query: 84  TLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 142
             +  GA V+       STPL  A   G L +V  L+++GAD ++ +    SC+ +AA  
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119

Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYN- 200
             GH S++  L+  G DV+   +   TPL  A Y    +D  + L+     +N+ + Y+ 
Sbjct: 120 --GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177

Query: 201 NSCLMIAAYKG 211
           N+ L  A   G
Sbjct: 178 NTALHWAVLAG 188

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  193 bits (494), Expect = 9e-62
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 8/211 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA  G  H   ++ L+  G  VN  T    +PL  AC  G L  VK L++HGA +N  
Sbjct: 64  HEAAIHG--HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
               ++ L  A     G    +  L+  GA V       ++P+  A   G ++ V  LI 
Sbjct: 122 TADWHTPLFNACVS--GSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 178

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           +G +++    +  + L +A        + +K L+ +GADVN   K Q +PL A       
Sbjct: 179 YGGNIDHKISHLGTPLYLACEN--QQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASE 235

Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           ++   L++ GAD    N      + +   + 
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  182 bits (465), Expect = 3e-57
 Identities = 62/241 (25%), Positives = 92/241 (38%), Gaps = 39/241 (16%)

Query: 2   IAAYKGAGHLSVIKTLVHAGADVNHSTKTQS----------------------------- 32
           + +     H      LV  G+ +      Q                              
Sbjct: 1   MGSSHH--HHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS 58

Query: 33  --TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
             +P+  A   G    ++ LI  G  +NI    + S L  A     GHLS +K L+  GA
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG--GHLSCVKILLKHGA 116

Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
            VN  T    TPL  AC  G  D V  L++HGA +   +    S +  AA +  GH+  +
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARR--GHVECV 173

Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
            +L+  G +++H      TPL  AC + +   VK L+E GAD+N      +S L      
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRT 232

Query: 211 G 211
            
Sbjct: 233 A 233

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  173 bits (441), Expect = 9e-54
 Identities = 57/194 (29%), Positives = 83/194 (42%), Gaps = 9/194 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A   G  HLS +K L+  GA VN  T    TPL  AC  G  D V  L++HGA +   
Sbjct: 97  HEACLGG--HLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +    S +  AA +G  H+  + +L+  G +++H      TPL  AC + +   VK L+E
Sbjct: 155 SDLA-SPIHEAARRG--HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
            GAD+N      +S L            +   L+  GAD          P+     +  L
Sbjct: 212 SGADVNQGK-GQDSPLHAVVRTA--SEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268

Query: 181 DIVKYLIEHGADLN 194
             + +L   GA L 
Sbjct: 269 AQL-FLEREGASLP 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  185 bits (472), Expect = 2e-58
 Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 22/227 (9%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
           + A       + +++ L+  GA+VN   +    TPL  A    R DIV+ L+ HGAD  +
Sbjct: 10  IKAVQNE--DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
                 +  ++AA    G + ++K  +  GADVN       T    A   G++  +K+L 
Sbjct: 68  RKKNGATPFLLAAIA--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 120 EHGADLNITNHYNNSC----------LMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQS 168
           + GA++N+                  LM AA K  GH+ V+K L+   GADVN       
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGR 183

Query: 169 TPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             L  A           I   L++HGAD+N+      + L++A  K 
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  179 bits (457), Expect = 3e-56
 Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 18/225 (8%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A         +++ L+  GAD     K  +TP   A   G + ++K  +  GAD+N  
Sbjct: 44  HNAVQMS--REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS----------TPLRAACYDG 110
           + Y  +  M AA    G +  +K L   GA+VN   KT+           T L  A   G
Sbjct: 102 DFYGFTAFMEAAVY--GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 111 RLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQ 167
            ++++K L++  GAD+N  ++   + L+ A      +   ++   L+  GADVN   +  
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 168 STPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKG 211
            TPL  A     L +V+ L+E    ++N T+    + L++A    
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  176 bits (448), Expect = 1e-54
 Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 22/213 (10%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           ++AA  G   + ++K  +  GADVN       T    A   G++  +K+L + GA++N+ 
Sbjct: 77  LLAAIAG--SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134

Query: 61  NHYNNSC----------LMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYD 109
                            LM AA KG  H+ V+K L+   GADVN         L  A   
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKG--HVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 110 GR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHST 164
                   I   L++HGAD+N+      + L++A  K   HL +++ L+     ++N + 
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK--HLGLVQRLLEQEHIEINDTD 250

Query: 165 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
               T L  A       I + L + GA  +  +
Sbjct: 251 SDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  163 bits (415), Expect = 7e-50
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC-LMIAAYKGAGHLSVIKTLVHAGAD 91
             L  A  +  +D+V+ L+E GA++N          L  A         +++ L+  GAD
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM--SREDIVELLLRHGAD 64

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
                K  +TP   A   G + ++K  +  GAD+N  + Y  +  M AA    G +  +K
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALK 122

Query: 152 TLVHAGADVNHSTKTQS----------TPLRAACYDGRLDIVKYLIEH-GADLNITNHYN 200
            L   GA+VN   KT+           T L  A   G ++++K L++  GAD+N  ++  
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 201 NSCLMIAAYKG 211
            + L+ A    
Sbjct: 183 RNALIHALLSS 193

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  135 bits (343), Expect = 4e-39
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLI 119
              +N  L+ A       + +++ L+  GA+VN   +    TPL  A    R DIV+ L+
Sbjct: 2   AVEDNHLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
            HGAD  +      +  ++AA    G + ++K  +  GADVN       T    A   G+
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIA--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

Query: 180 LDIVKYLIEHGADLNITNHYNNSC----------LMIAAYKG 211
           +  +K+L + GA++N+                  LM AA KG
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  176 bits (450), Expect = 1e-56
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 32  STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
           S  +      G +  +   IE    +N T+    + LM AA  G   ++V++ L+  GAD
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--QIAVVEFLLQNGAD 61

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
                K + + L  AC  G  DIVK L++ G D+N  +    + L+ A +    H+  +K
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG--NHVKCVK 119

Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
            L+ +GAD    T +    +  A   G   + + +  H   L    
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  163 bits (416), Expect = 2e-51
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
              A +G   +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  + 
Sbjct: 8   HQLAAQG--EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
                S L +A  K  G+  ++K L+  G DVN       TPL  A +   +  VK L+E
Sbjct: 66  GKGRESALSLACSK--GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
            GAD  I      + + +A     G+ SV + +      +  + K
Sbjct: 124 SGADPTIETDSGYNSMDLAVAL--GYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  147 bits (375), Expect = 3e-45
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           +   A +G   +  + T +     +NH+ +   TPL  A   G++ +V++L+++GAD  +
Sbjct: 7   VHQLAAQG--EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
                 S L +A  KG  +  ++K L+  G DVN       TPL  A +   +  VK L+
Sbjct: 65  LGKGRESALSLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
           E GAD  I      + + +A   G
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  122 bits (308), Expect = 3e-35
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
           S  +      G +  +   IE    +N T+    + LM AA  G   ++V++ L+  GAD
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--QIAVVEFLLQNGAD 61

Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
                K + + L  AC  G  DIVK L++ G D+N  +    + L+ A +  
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  180 bits (460), Expect = 1e-56
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 11/201 (5%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A      ++ ++ TL++AGA  N        PL  A       IVK L+  G D +  
Sbjct: 36  YYAIADN--NVRLVCTLLNAGALKN--LLENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLI 119
           +   N+ L  A     G++  +K  V     +    KT   T    A     + IV Y +
Sbjct: 92  DDKGNTALYYAVDS--GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP-LRAACYDG 178
                         SC+ I      GH+ ++  L+      N +      P ++ A  + 
Sbjct: 150 SEIPS-TFDLAILLSCIHITIKN--GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206

Query: 179 RLDIVKYLIEHGADLNITNHY 199
            +++++ L ++  ++   N  
Sbjct: 207 DIEMLQALFKYDINIYSANLE 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  167 bits (426), Expect = 2e-51
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 10/213 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           M  +         +K+ +    D   +     +    A  D  + +V  L+  GA  N+ 
Sbjct: 2   MDLSRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL 60

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
              N   L  AA        ++K L+ +G D +      +T L  A   G +  VK  ++
Sbjct: 61  E--NEFPLHQAATL--EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 121 HGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
               L         +    A       +S++   +              + +     +G 
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVML--NDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGH 173

Query: 180 LDIVKYLIEHGADLNITNHYNNS-CLMIAAYKG 211
           +D++  L+++    N  N       + +A    
Sbjct: 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  165 bits (420), Expect = 1e-50
 Identities = 26/210 (12%), Positives = 66/210 (31%), Gaps = 16/210 (7%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI- 59
             AA        ++K L+ +G D +      +T L  A   G +  VK  ++    L   
Sbjct: 67  HQAATLE--DTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
                 +    A       +S++   +              + +     +G +D++  L+
Sbjct: 125 GKTGWKTSFYHAVML--NDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLL 181

Query: 120 EHGADLNITNHYNNS-CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 178
           ++    N  N       + +A       + +++ L     ++        +         
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDN--KDIEMLQALFKYDINIY-------SANLENVLLD 232

Query: 179 RLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
             +I K +IE   +    ++  +  ++   
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  175 bits (447), Expect = 4e-56
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 5/169 (2%)

Query: 32  STPLRAACYDGRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
           S  +      G LD +K  +  G +L N  +    + L+ A+  G   +  ++ L+  GA
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--EIETVRFLLEWGA 60

Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
           D +   K + + L  A   G  DIV  L+E   D+NI +    + L+ A      H+  +
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--NHVKCV 118

Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 199
           + L+  GAD+     +  TP+  A   G   + + +  H   L  +N  
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  163 bits (416), Expect = 3e-51
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 7/171 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
              A +G   L  +K  +  G + VN   +   TPL  A   G ++ V++L+E GAD +I
Sbjct: 7   HQLAAQG--ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
                 S L +A+    G+  ++  L+    D+N       TPL  A     +  V+ L+
Sbjct: 65  LAKERESALSLASTG--GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP 170
             GADL        + + +A     G+  V + + +    +  S    + P
Sbjct: 123 ARGADLTTEADSGYTPMDLAVAL--GYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  118 bits (298), Expect = 1e-33
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 100 STPLRAACYDGRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
           S  +      G LD +K  +  G +L N  +    + L+ A+  G   +  ++ L+  GA
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--EIETVRFLLEWGA 60

Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           D +   K + + L  A   G  DIV  L+E   D+NI +    + L+ A    
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  177 bits (452), Expect = 6e-56
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 15/220 (6%)

Query: 1   MIAAYKGAGHLSVIKTLV----HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 56
            IA  +G  +L  +  LV      G +++     + TPL  A       +V+ L+  GA 
Sbjct: 14  HIAVVQG--NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 57  LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA----DVNHSTKTQSTPLRAACYDGRL 112
               + +  +   +A        + ++ L+ + A    D+        T L  A      
Sbjct: 72  PMALDRHGQTAAHLACEHR--SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129

Query: 113 DIVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
           + V+ L+E GAD++  +  +  S L+ A       LS+++ L+  GA+VN    + S+ L
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SLSMVQLLLQHGANVNAQMYSGSSAL 187

Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            +A   G L +V+ L+  GAD ++ N +N++ LM+A  + 
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  163 bits (416), Expect = 2e-50
 Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----D 56
            +A        SV++ LV AGA      +   T    AC       ++ L++  A    D
Sbjct: 51  HLAVITT--LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

Query: 57  LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIV 115
           L   N+   + L +A          ++ L+  GAD++    K+  +PL  A  +  L +V
Sbjct: 109 LEARNYDGLTALHVAVNTE--CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166

Query: 116 KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
           + L++HGA++N   +  +S L  A+ +G   L +++TLV +GAD +       TPL  A 
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRG--LLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224

Query: 176 YDGRLDIVKYLIEHGA 191
               +DI++      A
Sbjct: 225 SRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  154 bits (392), Expect = 7e-47
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIE----HGADLNITNHYNNSCLMIAAYKGAGHL 79
              + +   TPL  A   G L  V  L+      G +L+I N+   + L +A        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLP 59

Query: 80  SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSC 135
           SV++ LV AGA      +   T    AC       ++ L++  A    DL   N+   + 
Sbjct: 60  SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
           L +A          ++ L+  GAD++    K+  +PL  A  +  L +V+ L++HGA++N
Sbjct: 120 LHVAVNT--ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177

Query: 195 ITNHYNNSCLMIAAYKG 211
              +  +S L  A+ +G
Sbjct: 178 AQMYSGSSALHSASGRG 194

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  179 bits (457), Expect = 2e-55
 Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 25/233 (10%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + AA  G     ++  L     + + S   +STPL  A    R+ IV+ L++HGAD++  
Sbjct: 29  LEAARSG-NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +      L  A     GH  V + L+  GA VN     Q TPL  A    R+++   L+ 
Sbjct: 88  DKGGLVPLHNACSY--GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 121 HGADLNITNHYNNSCLMIAAYKG-------------------AGHLSVIKTLVHAGADVN 161
           HGAD  + N +  S + +A                          L+ +K  +       
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205

Query: 162 HSTKTQSTPLRAAC---YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
              ++  T L  A    +  R  + + L+  GA++N  N    + L +AA + 
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  176 bits (449), Expect = 4e-54
 Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 26/230 (11%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A   G  H  V + L+  GA VN     Q TPL  A    R+++   L+ HGAD  + 
Sbjct: 96  HNACSYG--HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153

Query: 61  NHYNNSCLMIAAYKG-------------------AGHLSVIKTLVHAGADVNHSTKTQST 101
           N +  S + +A                          L+ +K  +          ++  T
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213

Query: 102 PLRAAC---YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
            L  A    +  R  + + L+  GA++N  N    + L +AA +   H  V++ L   GA
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA--HNDVMEVLHKHGA 271

Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
            +N       T L  A   G L   + L+ +G+D +I +    +   +  
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  159 bits (406), Expect = 9e-48
 Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 5/186 (2%)

Query: 17  LVHAGADVNHSTKTQSTPL-RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 75
           L    A    + + +   L  AA       ++  L     + + ++   ++ L +AA   
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY- 68

Query: 76  AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
              + +++ L+  GADV+   K    PL  AC  G  ++ + L++HGA +N  + +  + 
Sbjct: 69  -NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127

Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L  AA K    + V   L+  GAD         + +  A      + + Y  +  + L  
Sbjct: 128 LHEAASK--NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185

Query: 196 TNHYNN 201
               + 
Sbjct: 186 AREADL 191

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (393), Expect = 7e-46
 Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 33/233 (14%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY----------- 49
             AA K    + V   L+  GAD         + +  A      + + Y           
Sbjct: 129 HEAASKN--RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186

Query: 50  ----------LIEHGADLNITNHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKT 98
                      +            + + L  A          V + L+  GA+VN   K 
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246

Query: 99  QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
             TPL  A      D+++ L +HGA +N  +    + L  AA  G  HL   + L+  G+
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG--HLQTCRLLLSYGS 304

Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           D +  +    T  +        + V+ ++     +  ++   +  L+ A+  G
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (393), Expect = 9e-46
 Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 3/166 (1%)

Query: 46  IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 105
               L +  A   +T  Y    L+ AA  G     ++  L     + + S   +STPL  
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSG-NEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A    R+ IV+ L++HGAD++  +      L  A     GH  V + L+  GA VN    
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY--GHYEVTELLLKHGACVNAMDL 122

Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            Q TPL  A    R+++   L+ HGAD  + N +  S + +A    
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  175 bits (446), Expect = 7e-55
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 17/224 (7%)

Query: 1   MIAAYKGAG-----------HLSVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVK 48
           MIA+  G G             +VI   ++ GA + N + +T  T L  A    R D  K
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74

Query: 49  YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAAC 107
            L+E  AD NI ++   + L  A         V + L+   A D++      +TPL  A 
Sbjct: 75  RLLEASADANIQDNMGRTPLHAAVSAD--AQGVFQILIRNRATDLDARMHDGTTPLILAA 132

Query: 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167
                 +++ LI   AD+N  +    S L  AA     ++     L+  GA+ +     +
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN--NVDAAVVLLKNGANKDMQNNRE 190

Query: 168 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            TPL  A  +G  +  K L++H A+ +IT+H +     IA  + 
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  168 bits (429), Expect = 3e-52
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 7/198 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 59
            +AA          K L+ A AD N       TPL AA       + + LI + A DL+ 
Sbjct: 62  HLAARYS--RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
             H   + L++AA        +++ L+++ ADVN       + L  A     +D    L+
Sbjct: 120 RMHDGTTPLILAARLA--VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           ++GA+ ++ N+   + L +AA +G       K L+   A+ + +      P   A     
Sbjct: 178 KNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235

Query: 180 LDIVKYLIEHGADLNITN 197
            DIV+ L       +  +
Sbjct: 236 HDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  156 bits (397), Expect = 2e-47
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 19/204 (9%)

Query: 23  DVNHSTKTQSTPLRAACYDG-------------RLDIVKYLIEHGADL-NITNHYNNSCL 68
           DVN       TPL  A   G                ++   I  GA L N T+    + L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 127
            +AA          K L+ A AD N       TPL AA       + + LI + A DL+ 
Sbjct: 62  HLAARY--SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
             H   + L++AA        +++ L+++ ADVN       + L  A     +D    L+
Sbjct: 120 RMHDGTTPLILAARL--AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
           ++GA+ ++ N+   + L +AA +G
Sbjct: 178 KNGANKDMQNNREETPLFLAAREG 201

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  177 bits (452), Expect = 2e-54
 Identities = 38/225 (16%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-----HGA 55
                 G  +L +IK LV  GA      K   TPL  A      + +  +++        
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202

Query: 56  DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
            L+  N   NS L  A         V    V  G DVN      + PL  +     + + 
Sbjct: 203 RLDYANKQGNSHLHWAILIN--WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260

Query: 116 KYLIEHGADLNITNHYNN-------------SCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
           K L++      I     +               +  AA        V++ L     +V  
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS--KQEVLQLLQEKLDEVVR 318

Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
           S  T +             + +  +   A +   +        ++
Sbjct: 319 SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  168 bits (428), Expect = 7e-51
 Identities = 45/231 (19%), Positives = 72/231 (31%), Gaps = 35/231 (15%)

Query: 7   GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
           G G +           +   S       +  A   G+ D V+ LIE G    I N +  +
Sbjct: 1   GPGSM-----TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT 55

Query: 67  CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-- 124
            L +A     G +   K L   G   +        P+  A    + D+V  L+E   +  
Sbjct: 56  ALHLACKF--GCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERG 111

Query: 125 -------------------LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
                               ++ +    + L      G  +L +IK LV  GA      K
Sbjct: 112 QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171

Query: 166 TQSTPLRAACYDGRLDIVKYLIE-----HGADLNITNHYNNSCLMIAAYKG 211
              TPL  A      + +  +++         L+  N   NS L  A    
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  166 bits (423), Expect = 3e-50
 Identities = 42/228 (18%), Positives = 69/228 (30%), Gaps = 32/228 (14%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----- 55
            +A   G   +   K L   G   +        P+  A    + D+V  L+E        
Sbjct: 58  HLACKFG--CVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113

Query: 56  ----------------DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 99
                             ++ +    + L      G  +L +IK LV  GA      K  
Sbjct: 114 PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173

Query: 100 STPLRAACYDGRLDIVKYLIE-----HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
            TPL  A      + +  +++         L+  N   NS L  A         V    V
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI--NWEDVAMRFV 231

Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
             G DVN      + PL  +     + + K L++      I     ++
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  173 bits (440), Expect = 3e-54
 Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 12/219 (5%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A  +      V + L    + +    +    PL  +      +I  +L+    ++N+ 
Sbjct: 7   HQACMEN-EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65

Query: 61  NHYNNS---CLMIAAYKGAGHLSVIKTLV--HAGADVNHSTKTQSTPLRAACYDGRLDIV 115
           ++ ++S      IA   G  +L V+K+L       D+N  T    T L  A      ++ 
Sbjct: 66  DYPDDSGWTPFHIACSVG--NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123

Query: 116 KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAA 174
           ++LIE+GA + I + +N   L  AA    G L +I+ L     + VN   K   TPL  A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASV--GSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 175 CYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGI 212
             +G  D    L+E +GA+ ++ ++       +A  + +
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 220

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  152 bits (386), Expect = 3e-46
 Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 11/187 (5%)

Query: 32  STPLRAACYDGRLDIV-KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
           + PL  AC +     V + L    + L   +      L  +         +   L+    
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKME 60

Query: 91  DVN---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAG 145
           +VN   +   +  TP   AC  G L++VK L +     DLN   +   +CL +A  K   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK--K 118

Query: 146 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCL 204
              V + L+  GA V    K    PL  A   G L +++ L   G + +N  +    + L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

Query: 205 MIAAYKG 211
             A  +G
Sbjct: 179 FHALAEG 185

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  146 bits (370), Expect = 9e-44
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVN---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GA 55
             +         +   L+    +VN   +   +  TP   AC  G L++VK L +     
Sbjct: 41  HWSVSFQ--AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 98

Query: 56  DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
           DLN   +   +CL +A  K      V + L+  GA V    K    PL  A   G L ++
Sbjct: 99  DLNKITNQGVTCLHLAVGKK--WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 116 KYLIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRA 173
           + L   G + +N  +    + L  A  +G  H      LV   GA+ +      +     
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEG--HGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

Query: 174 ACYDGRLDIVKYLIEH 189
           A       + K+ + +
Sbjct: 215 AL---NEQVKKFFLNN 227

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  172 bits (438), Expect = 6e-54
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 8   AGHLSVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
               +VI   ++ GA + N + +T  T L  A    R D  K L+E  AD NI ++   +
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 67  CLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
            L  A         V + L+   A D++      +TPL  A       +++ LI   AD+
Sbjct: 61  PLHAAVSAD--AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185
           N  +    S L  AA     ++     L+  GA+ +     + TPL  A  +G  +  K 
Sbjct: 119 NAVDDLGKSALHWAAAVN--NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 186 LIEHGADLNITNHYNNSCLMIAAYKG 211
           L++H A+ +IT+H +     IA  + 
Sbjct: 177 LLDHFANRDITDHMDRLPRDIAQERM 202

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  167 bits (425), Expect = 4e-52
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 7/199 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 59
            +AA          K L+ A AD N       TPL AA       + + LI + A DL+ 
Sbjct: 30  HLAARYS--RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
             H   + L++AA        +++ L+++ ADVN       + L  A     +D    L+
Sbjct: 88  RMHDGTTPLILAARLA--VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           ++GA+ ++ N+   + L +AA +G       K L+   A+ + +      P   A     
Sbjct: 146 KNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203

Query: 180 LDIVKYLIEHGADLNITNH 198
            DIV+ L E+    +   H
Sbjct: 204 HDIVRLLDEYNLVRSPQLH 222

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  173 bits (440), Expect = 1e-53
 Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 19/225 (8%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-- 58
            +AA  G    S ++ L  AGA V  + +   T L  AC          L++        
Sbjct: 50  HLAAILG--EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 59  -----------ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107
                       T   +++   + +                   +        TPL  A 
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPN-PENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 108 YDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT 166
                ++V+ L + GADLN        + L +A        SV++ L+ AGAD       
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ--AASVLELLLKAGADPTARMYG 224

Query: 167 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             TPL +A       + + L  HGA          S    +    
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  164 bits (417), Expect = 4e-50
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 24/229 (10%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGAD---VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 57
            +A      H   +  L+   A    ++       T L  A   G    V+ L   GA +
Sbjct: 14  HLAVIHQ--HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 58  NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP--------------L 103
            +     ++ L +A        +    L+                               
Sbjct: 72  LVAERGGHTALHLACRV--RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
             +  +   +      +    L   N+  ++ L +A         +++ L  AGAD+N  
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH--KDAEMVRLLRDAGADLNKP 187

Query: 164 TKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             T   TPL  A       +++ L++ GAD     +   + L  A  + 
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  148 bits (376), Expect = 4e-44
 Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---LNITNHYNNSCLMIAAYKGAGHLS 80
             + T+   T L  A        + +L+   A    L++ N    + L +AA    G  S
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEAS 59

Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-------------I 127
            ++ L  AGA V  + +   T L  AC          L++                    
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
           T   +++   + +                   +        TPL  A      ++V+ L 
Sbjct: 120 TPDTSHAPAAVDSQPN-PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 188 EHGADLNI-TNHYNNSCLMIAAYKG 211
           + GADLN        + L +A    
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQ 203

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  139 bits (352), Expect = 2e-40
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 21/205 (10%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP--------------LRAACYDGRLDI 46
            +A        +    L+                                 +  +   + 
Sbjct: 83  HLACRVR--AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 47  VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ-STPLRA 105
                +    L   N+  ++ L +A         +++ L  AGAD+N    T   TPL  
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHK--DAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
           A       +++ L++ GAD     +   + L  A  +   +  + + L   GA       
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--NPILARLLRAHGAPEPEDGG 256

Query: 166 TQSTPLRAACYDGRLDIVKYLIEHG 190
            + +P  ++  D   D      E+ 
Sbjct: 257 DKLSPCSSSGSDSDSDNRDEGDEYD 281

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  169 bits (430), Expect = 4e-53
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 9/194 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A  +      V + L      V+      +TPL  A ++  ++I K LI+ GAD+N+ 
Sbjct: 11  EAANQRD--TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           N  ++S  + A  +  G   ++  ++ HA  D+N   +     L  A   G +D VK L+
Sbjct: 69  NSISDSPYLYAGAQ--GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 120 EHG-ADLNITNHYNNSCLMIAAYKGA---GHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
           E G  D++  N +  + L+ A         +  ++K L+  GAD +    +  T +  A 
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186

Query: 176 YDGRLDIVKYLIEH 189
             G  +I K L ++
Sbjct: 187 QKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  165 bits (420), Expect = 1e-51
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 11/186 (5%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L AA       + + L +    ++  +   N+ L IA +     + + K L+  GAD+
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIEIAKALIDRGADI 65

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIK 151
           N       +P   A   GR +I+ Y+++H   DLN  N Y  + L+ AA K  GH+  +K
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK--GHIDNVK 123

Query: 152 TLVHAG-ADVNHSTKTQSTPLRAAC-----YDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
            L+  G  D++       T L  A           DIVK L+E+GAD +I ++   + + 
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183

Query: 206 IAAYKG 211
            A  KG
Sbjct: 184 YANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  130 bits (330), Expect = 4e-38
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 59  ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
           +  +   + L  A  +      V + L      V+      +TPL  A ++  ++I K L
Sbjct: 1   MKTYEVGALLEAANQR--DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 119 IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYD 177
           I+ GAD+N+ N  ++S  + A  +  G   ++  ++ HA  D+N   +     L  A   
Sbjct: 59  IDRGADINLQNSISDSPYLYAGAQ--GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 178 GRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKG 211
           G +D VK L+E G  D++  N +  + L+ A    
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  172 bits (438), Expect = 4e-53
 Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 14/214 (6%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A      ++ ++K LV  GA++N        PL AA   G LDI +YLI  GA +   
Sbjct: 78  HQACIDD--NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           N   ++ L IA  +      +++  V   G D+           +        D  ++L 
Sbjct: 136 NSEGDTPLDIAEEE--AMEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWLN 186

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
               +         + L +AA K  G+  V+K L+ A  DVN       TPL AA + G+
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAK--GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
            +  + L+E+  D+   N    +   +A    + 
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  168 bits (427), Expect = 2e-51
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 14/212 (6%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + A   G      +  L+  GAD+N++     T L  AC D  +D+VK+L+E+GA++N  
Sbjct: 45  LAACSSG--DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI- 119
           ++     L  AA    G+L + + L+  GA V        TPL  A  +   ++++  + 
Sbjct: 103 DNEGWIPLHAAASC--GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
             G D+                         + L     +     K+  T L  A   G 
Sbjct: 161 RQGVDIEAARKEEER---------IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            +++K LI+   D+NI ++   + L  AA+ G
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  166 bits (423), Expect = 8e-51
 Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 15/212 (7%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +  + G    + ++  V             +  L A    G  + V  L+E GAD+N  
Sbjct: 13  QLKRWIG--SETDLEPPVVKRKKTKVKFDDGAVFLAACSS-GDTEEVLRLLERGADINYA 69

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N    + L  A      ++ ++K LV  GA++N        PL AA   G LDI +YLI 
Sbjct: 70  NVDGLTALHQACID--DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGR 179
            GA +   N   ++ L IA  +      +++  V   G D+           +       
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEE--AMEELLQNEVNRQGVDIE-------AARKEEERIML 178

Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            D  ++L     +         + L +AA KG
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  146 bits (370), Expect = 6e-43
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 6/188 (3%)

Query: 24  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
           +  +   Q    +   + G    ++  +       +         + A     G    + 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSS--GDTEEVL 57

Query: 84  TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
            L+  GAD+N++     T L  AC D  +D+VK+L+E+GA++N  ++     L  AA   
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC- 116

Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNS 202
            G+L + + L+  GA V        TPL  A  +   ++++  +   G D+         
Sbjct: 117 -GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175

Query: 203 CLMIAAYK 210
            ++  A +
Sbjct: 176 IMLRDARQ 183

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  141 bits (357), Expect = 5e-41
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 14/195 (7%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNI 59
             AA  G  +L + + L+  GA V        TPL  A  +   ++++  +   G D+  
Sbjct: 111 HAAASCG--YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
                                  + L     +     K+  T L  A   G  +++K LI
Sbjct: 169 ARKEEER---------IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           +   D+NI ++   + L  AA+ G       + LV    D+    K   T    A  D  
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWG--KEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 180 LDIVKYLIEHGADLN 194
             + +   +     +
Sbjct: 278 GYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (305), Expect = 3e-33
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 1   MIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
            IA  +      +++  V   G D+           +        D  ++L     +   
Sbjct: 144 DIAEEEA--MEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVR 194

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
                 + L +AA KG  +  V+K L+ A  DVN       TPL AA + G+ +  + L+
Sbjct: 195 HAKSGGTALHVAAAKG--YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 168
           E+  D+   N    +   +A     G+L  +          +   + +S
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLEEL--QKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 1/52 (1%)

Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           +  +   Q    +   + G    ++  +       +         + A   G
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSSG 51

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  171 bits (436), Expect = 4e-52
 Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 29/234 (12%)

Query: 1   MIAAYKGAGHLSVI--------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 52
              A                  K  + AGADVN     ++TPL  A    R  +V YL++
Sbjct: 130 HWIASNS--SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187

Query: 53  HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYD 109
            GAD  I N    S L  AA        ++  ++       D+    +   T L    ++
Sbjct: 188 AGADPTIYNKSERSALHQAAAN--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245

Query: 110 GRLD---IVKYLIEHGADLNIT--------NHYNNSCLMIAAYKGAGHLSVIKTLV-HAG 157
              D     K L+E GA ++           +   + L  AA     ++ ++K LV   G
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV--SNMPIVKYLVGEKG 303

Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           ++ +   +   TP+  A  +GR+++V YLI+ GA +   +  +++   +A    
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 357

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  162 bits (411), Expect = 3e-48
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 17/205 (8%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH---GADL 57
           M+A         ++  L+ AGAD     K++ + L  A  +    ++ Y++       D+
Sbjct: 171 MLAVLAR--RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228

Query: 58  NITNHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQS--------TPLRAACY 108
              +    + LMI A+      ++  K LV  GA V++    +         T L  A  
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288

Query: 109 DGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167
              + IVKYL+   G++ +  +    + +M+AA +G   + V+  L+  GA V     T 
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG--RIEVVMYLIQQGASVEAVDATD 346

Query: 168 STPLRAACYDGRLDIVKYLIEHGAD 192
            T  + A  +   +IV        +
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  156 bits (396), Expect = 5e-46
 Identities = 43/225 (19%), Positives = 70/225 (31%), Gaps = 28/225 (12%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G+  +                     L      G   I + +     ++     +N + L
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR-HNRTVL 129

Query: 69  MIAAYKGAGHLSVI--------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
              A                  K  + AGADVN     ++TPL  A    R  +V YL++
Sbjct: 130 HWIASN--SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYD 177
            GAD  I N    S L  AA        ++  ++       D+    +   T L    ++
Sbjct: 188 AGADPTIYNKSERSALHQAAAN--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245

Query: 178 GRLD---IVKYLIEHGADLNIT--------NHYNNSCLMIAAYKG 211
              D     K L+E GA ++           +   + L  AA   
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  130 bits (328), Expect = 4e-36
 Identities = 40/199 (20%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 21  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
               + S  +    L  A YDG +   +         N   HY+            G+  
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGN--GNDF 75

Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
           +                     L      G   I + +     ++     +N + L   A
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR-HNRTVLHWIA 133

Query: 141 YKGAGHLSVI--------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 192
                             K  + AGADVN     ++TPL  A    R  +V YL++ GAD
Sbjct: 134 SN--SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 193 LNITNHYNNSCLMIAAYKG 211
             I N    S L  AA   
Sbjct: 192 PTIYNKSERSALHQAAANR 210

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  127 bits (321), Expect = 5e-35
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 21/175 (12%)

Query: 1   MIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYDGRLD---IVKYLIEHG 54
             AA        ++  ++       D+    +   T L    ++   D     K L+E G
Sbjct: 204 HQAAANR--DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

Query: 55  ADLNIT--------NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRA 105
           A ++           +   + L  AA     ++ ++K LV   G++ +   +   TP+  
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVS--NMPIVKYLVGEKGSNKDKQDEDGKTPIML 319

Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           A  +GR+++V YLI+ GA +   +  +++   +A      H +++        + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN--HHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 9/93 (9%), Positives = 21/93 (22%), Gaps = 11/93 (11%)

Query: 122 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 181
               + +   +   L+ A+Y G           +     N        P      +G   
Sbjct: 27  NRKNHQSITSSQHSLLEASYDG-----------YIKRQRNELQHYSLYPNPQGYGNGNDF 75

Query: 182 IVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
           +  +   +          +   L   A     +
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAI 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  160 bits (408), Expect = 5e-50
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 11/180 (6%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
             +   C +G    V+  +++   DLN  + +  S L  A  +G    +V++ L+  GA 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG--RSAVVEMLIMRGAR 64

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
           +N   +   TPL  A   G  DIV+ L+++ AD+N  N + N  L  A + G     V +
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG--QDQVAE 122

Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            LV  GA V+   K    P+  A    R  + +   + G +LN              +KG
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP------YKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  145 bits (368), Expect = 5e-44
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 1   MIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
                +G  +   ++  + +   D+N       +PL  AC +GR  +V+ LI  GA +N+
Sbjct: 10  FTQCREG--NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
            N  +++ L +AA    GH  +++ L+   AD+N   +  + PL  AC+ G+  + + L+
Sbjct: 68  MNRGDDTPLHLAASH--GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
            +GA ++I N Y    +  A         + +     G ++N        P +   + G 
Sbjct: 126 ANGALVSICNKYGEMPVDKAKAP--LRELLRERAEKMGQNLNR------IPYKDTFWKGT 177

Query: 180 L 180
            
Sbjct: 178 T 178

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  162 bits (412), Expect = 6e-50
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 8/184 (4%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L               I HG  +          L+ ++ +  G   +++ +++   D 
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLAL-LLDSSLE--GEFDLVQRIIYEVDDP 63

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           +       T L  A   G  +IVK+L++ G ++N  +    + L  AA     ++ V K 
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--NNVQVCKF 121

Query: 153 LVHAGADVNHSTK---TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 209
           LV +GA V   T      +        +G     ++L      + I N      L     
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181

Query: 210 KGID 213
           +  D
Sbjct: 182 QNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  155 bits (393), Expect = 4e-47
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 16/233 (6%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
                            +  G  V          L  +  +G  D+V+ +I    D ++ 
Sbjct: 10  PPGKRTN--LRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N    + L  A     GH  ++K LV  G +VN +     TPL  A     + + K+L+E
Sbjct: 67  NDEGITALHNAVCA--GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 121 HGADLNITNHYNNSC---LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
            GA +    + +            +  G+    + L      +    K     L      
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEE--GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182

Query: 178 GRLDIVKYLIEHGADLNITN--HYNNSCLMIAAYKGIDVGRVGPGLFDRYPSA 228
              ++    ++ G  + I +    +      A     + G V   L   YP  
Sbjct: 183 NDDEL---PMKEGDCMTIIHREDEDEIEWWWARLNDKE-GYVPRNLLGLYPRI 231

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  159 bits (405), Expect = 9e-50
 Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)

Query: 21  GADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
           G+  +H   +     L  A   GR D V+ L+ +GAD+N  +    + L +AA+ G  HL
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HL 60

Query: 80  SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
            +++ L+  GADVN       TPLR A   G L+IV+ L+++GAD+N  +   ++ L +A
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
           A    GHL +++ L+  GADVN   K   T    +  +G  D+ + L + 
Sbjct: 121 AMF--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  142 bits (360), Expect = 5e-43
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 53  HGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 111
            G+  +  +  +    L+ AA  G      ++ L+  GADVN    +  TPL  A ++G 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAG--RDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59

Query: 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
           L+IV+ L+++GAD+N  +H   + L +AA  G  HL +++ L+  GADVN +     TPL
Sbjct: 60  LEIVEVLLKNGADVNAVDHAGMTPLRLAALFG--HLEIVEVLLKNGADVNANDMEGHTPL 117

Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             A   G L+IV+ L+++GAD+N  + +  +   I+   G
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (292), Expect = 1e-32
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +AA+ G  HL +++ L+  GADVN       TPLR A   G L+IV+ L+++GAD+N  
Sbjct: 52  HLAAFNG--HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +   ++ L +AA    GHL +++ L+  GADVN   K   T    +  +G  D+ + L +
Sbjct: 110 DMEGHTPLHLAAMF--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

Query: 121 H 121
            
Sbjct: 168 L 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  160 bits (406), Expect = 2e-49
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A Y           L     D+ + T    T        GR  ++         +   
Sbjct: 17  FRALYTF--EPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQ 69

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
               ++ L  AA +G  +LS ++  +     VN   K  ST L  AC+ G  DIV+ L  
Sbjct: 70  AESIDNPLHEAAKRG--NLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 121 H-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
               +LN  N   ++ L  AA+KG  +  +++ L+  GA  +     +      A     
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKG--YADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185

Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             ++K      A   ++N  +      +  + 
Sbjct: 186 ASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  157 bits (400), Expect = 2e-48
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 10/186 (5%)

Query: 28  TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 87
            K     +  A Y         L     D+      +++       KG       +T + 
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-------RTGLI 61

Query: 88  AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
               V    ++   PL  A   G L  ++  +++   +N  +   ++ L  A + G  H 
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG--HK 119

Query: 148 SVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
            +++ L      ++N   K   T L AA + G  DIV+ L+  GA  ++ N        +
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

Query: 207 AAYKGI 212
           A     
Sbjct: 180 ATNAAC 185

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  145 bits (367), Expect = 2e-43
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 12/182 (6%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
                KG       +T +     V    ++   PL  A   G L  ++  +++   +N  
Sbjct: 50  WKGTSKG-------RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           +   ++ L  A + G  H  +++ L      ++N   K   T L AA + G  DIV+ L+
Sbjct: 103 DKAGSTALYWACHGG--HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
             GA  ++ N        +A        S++K      A    S          +  +  
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAA--CASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

Query: 180 LD 181
             
Sbjct: 219 HH 220

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  157 bits (399), Expect = 5e-48
 Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 2   IAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
           +A      A  + VI+ +    A +N     Q TPL  A    + +I + L+  G D  +
Sbjct: 14  LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD------VNHSTKTQSTPLRAACYDGRLD 113
            +   N+ L +A  +  G L+ +  L  +         +  +     T L  A   G L 
Sbjct: 74  RDFRGNTPLHLACEQ--GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 114 IVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 172
           IV+ L+  GAD+N     N  + L +A      +  ++  L+  GADVN  T    +P +
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDL--QNPDLVSLLLKCGADVNRVTYQGYSPYQ 189

Query: 173 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
                    I + L +   +       +             
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  151 bits (385), Expect = 6e-46
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 15/190 (7%)

Query: 33  TPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 88
           + L  A         +++++ +    A LN  N+   + L +A         + + L+ A
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPEIAEALLGA 67

Query: 89  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYK 142
           G D        +TPL  AC  G L  V  L +          L  TN+  ++CL +A+  
Sbjct: 68  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127

Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
             G+L +++ LV  GADVN        T L  A      D+V  L++ GAD+N   +   
Sbjct: 128 --GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185

Query: 202 SCLMIAAYKG 211
           S   +   + 
Sbjct: 186 SPYQLTWGRP 195

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  138 bits (350), Expect = 1e-40
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 13/190 (6%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---- 56
            +A         + + L+ AG D        +TPL  AC  G L  V  L +        
Sbjct: 50  HLAVITN--QPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107

Query: 57  --LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDGRLD 113
             L  TN+  ++CL +A+  G  +L +++ LV  GADVN        T L  A      D
Sbjct: 108 SILKATNYNGHTCLHLASIHG--YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165

Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
           +V  L++ GAD+N   +   S   +   +      + + L     +              
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQLTWGRP--STRIQQQLGQLTLENLQMLPESEDEESY 223

Query: 174 ACYDGRLDIV 183
                  +  
Sbjct: 224 DTESEFTEFT 233

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  154 bits (391), Expect = 1e-47
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L +A   G L+ +  L+++  ++N  N +  + L +      G+  + + L+  GA+ 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---GNPEIARRLLLRGANP 63

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           +   +T    +  A   G LD ++ L+E  AD+NI ++  N  L +AA +  GHL V++ 
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEF 121

Query: 153 LVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           LV   A +V H      T    A   GR ++V  +  +GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  114 bits (289), Expect = 2e-32
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +      G+  + + L+  GA+ +   +T    +  A   G LD ++ L+E  AD+NI 
Sbjct: 43  QVMKL---GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           ++  N  L +AA +  GHL V++ LV   A +V H      T    A   GR ++V  + 
Sbjct: 100 DNEGNLPLHLAAKE--GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

Query: 120 EHGA 123
            +GA
Sbjct: 158 ANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  113 bits (285), Expect = 8e-32
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
             L +A   G L+ +  L+++  ++N  N +  + L +      G+  + + L+  GA+ 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---GNPEIARRLLLRGANP 63

Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           +   +T    +  A   G LD ++ L+E  AD+NI ++  N  L +AA +G
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 8/46 (17%), Positives = 21/46 (45%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
             L +A   G L+ +  L+++  ++N  N +  + L +      ++
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI 52

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  154 bits (392), Expect = 4e-47
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 7/202 (3%)

Query: 14  IKTLVHAGADVNHSTK---TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
           +++++        + +        L  A   G L++V+  ++   D +  N    + L  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 71  AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
           A      + S++  L+ AGA+VN       TPL  A       I   L++HGA +  T  
Sbjct: 61  AICG--ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 131 YN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
            +  +          G+      L      +          L     +   D + +    
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGE 177

Query: 190 GADLNITNHYNNSCLMIAAYKG 211
              +   +    +    AA  G
Sbjct: 178 SVTVLRRDGPEETDWWWAALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  137 bits (347), Expect = 2e-40
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 10/174 (5%)

Query: 47  VKYLIEHGADLNITNHYNNS---CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
           ++ ++              +    L+ AA  G   L V++  V    D +   +   T L
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTG--ELEVVQQAVKEMNDPSQPNEEGITAL 58

Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
             A       IV +LI  GA++N  + +  + L  AA        +   LV  GA +  +
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN--DTVICMALVQHGAAIFAT 116

Query: 164 T-KTQSTPLRAA--CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
           T    +T         +G  D   YL +    + + N      L   + +  D 
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  137 bits (346), Expect = 4e-40
 Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + AA  G   L V++  V    D +   +   T L  A       IV +LI  GA++N  
Sbjct: 26  LDAALTG--ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAA--CYDGRLDIVKY 117
           + +  + L  AA        +   LV  GA +  +T    +T         +G  D   Y
Sbjct: 84  DSHGWTPLHCAASC--NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY 141

Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
           L +    + + N      L   +   A     +         V      + T    A   
Sbjct: 142 LADVEQSMGLMNSGAVYALWDYS---AEFGDELSFREGESVTVLRRDGPEETDWWWAALH 198

Query: 178 GRLDIV 183
           G+   V
Sbjct: 199 GQEGYV 204

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  150 bits (381), Expect = 8e-46
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 12/191 (6%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            I   K                  N+      TPL  AC  G  + +  L+E+   L   
Sbjct: 13  KIKDEKSINQN--------LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +   ++ L+ A       L + + L+  G++VN    +  TPL  +   G  ++  +L+E
Sbjct: 65  DIEGSTALIWAVKNN--RLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HGA++N  N    + L++A+    G   ++K L+  GAD++    T  T   +A   GR 
Sbjct: 123 HGANVNDRNLEGETPLIVASKY--GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180

Query: 181 DIVKYLIEHGA 191
           +++K   E   
Sbjct: 181 EVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  140 bits (355), Expect = 6e-42
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 17/193 (8%)

Query: 21  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL--NITNHYNNSCLMIAAYKGAGH 78
           G+ ++ + +      +           +  I    D   N  + YN + LM+A   G   
Sbjct: 1   GSHMDKNGEI---VEKIK--------DEKSINQNLDFLRNYRDSYNRTPLMVACMLG--M 47

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
            + I  LV     +       ST L  A  + RL I + L+  G+++N  +    + LM 
Sbjct: 48  ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 198
           +   G  +  +   L+  GA+VN       TPL  A   GR +IVK L+E GAD++  + 
Sbjct: 108 SIIFG--YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165

Query: 199 YNNSCLMIAAYKG 211
              +    A   G
Sbjct: 166 TGLTAEASARIFG 178

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  146 bits (370), Expect = 1e-44
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 20  AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
             A  +   +  +  L  A   GR++ V+ L+E GA+ N  N Y    + +      G  
Sbjct: 3   PAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---GSA 57

Query: 80  SVIKTLVHAGADVNHSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
            V + L+  GA+ N +     T P+  A  +G LD +  L   GA L++ + +    + +
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 183
           A     GH  V + L  A           S   R    +G  DI 
Sbjct: 118 AEEL--GHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  129 bits (326), Expect = 5e-38
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA +G   +  ++ L+ AGA+ N        P++     G   + + L+ HGA+ N  
Sbjct: 17  ATAAARG--RVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73

Query: 61  NHYNNSC-LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           +    +  +  AA +G   L  +  L  AGA ++        P+  A   G  D+ +YL 
Sbjct: 74  DPATLTRPVHDAAREG--FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 120 EHGADLNITNHYNNSCLMIAAYKGA 144
                   +NH       I A +G 
Sbjct: 132 AAAGGTRGSNH-----ARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
             A  +   +  +  L  A   GR++ V+ L+E GA+ N  N Y    + +       V
Sbjct: 3   PAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV 59

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (366), Expect = 4e-44
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 33  TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
             L  A   G +  V+ L+       +  N +  + L +  +   G  ++   L+  GA 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---GSTAIALELLKQGAS 60

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
            N    + ++P+  A   G LD +K L+EHGAD+N+ +      + +A  +  GH +V+ 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVS 118

Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
            L    +D++       TPL  A   G  D+V  L  H
Sbjct: 119 FLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  122 bits (309), Expect = 2e-35
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 68  LMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
           L  AA +G   +  ++ L+H      +   +   T L+   + G   I   L++ GA  N
Sbjct: 6   LSGAAARG--DVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           + +    S +  AA  G   L  +K LV  GADVN    T + P+  A  +G   +V +L
Sbjct: 63  VQDTSGTSPVHDAARTG--FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
               +DL+  +    + L +A  +G
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRG 144

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  115 bits (291), Expect = 1e-32
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +  +   G  ++   L+  GA  N    + ++P+  A   G LD +K L+EHGAD+N+ 
Sbjct: 41  QVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +      + +A  +  GH +V+  L    +D++       TPL  A   G  D+V  L  
Sbjct: 98  DGTGALPIHLAVQE--GHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

Query: 121 H 121
           H
Sbjct: 155 H 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (265), Expect = 7e-29
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 101 TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
             L  A   G +  V+ L+       +  N +  + L +  +   G  ++   L+  GA 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---GSTAIALELLKQGAS 60

Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            N    + ++P+  A   G LD +K L+EHGAD+N+ +      + +A  +G
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 169 TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGIDV 214
             L  A   G +  V+ L+       +  N +  + L +  +    +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI 50

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  146 bits (372), Expect = 6e-44
 Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 35/235 (14%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           +I    G  H        +  ADV    +   TP   A        +  L+    D++  
Sbjct: 20  LIEWKDG--HSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLL-EDRDVDAV 73

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLI 119
           +    + L+  A    G    ++ L  AGAD++H   +   T L  A    R ++V+ L+
Sbjct: 74  DENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ------------ 167
           E GAD+ + +    + L +A        +     +  G  +                   
Sbjct: 132 ELGADIEVEDERGLTALELAREI--LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEV 189

Query: 168 ----------STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212
                             +    D       H A+    +      L  A  + +
Sbjct: 190 DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  139 bits (353), Expect = 5e-41
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 12/195 (6%)

Query: 19  HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 78
                 + +    +        DG            AD+        +    AA K    
Sbjct: 3   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKA--D 57

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLM 137
              +  L+    DV+   +   T L      G    V+ L E GADL+  +       L 
Sbjct: 58  EQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116

Query: 138 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
           +AA        V++ LV  GAD+    +   T L  A    +       ++ G  + +  
Sbjct: 117 MAAGYV--RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174

Query: 198 HYNNSCLMIAAYKGI 212
             N   ++       
Sbjct: 175 VIN---VLEGQVFEY 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  146 bits (369), Expect = 1e-43
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 3   AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 62
            AY G     + + ++   +    + +   T L  AC  G  +IV++L++ G  +N  + 
Sbjct: 13  LAYSG-KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71

Query: 63  YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 122
              S L IAA    G   ++K L+  GA VN   +   TPL  A    R +I   L+E G
Sbjct: 72  AGWSPLHIAASA--GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 123 ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI 182
           A+ +  +HY+ + +  AA K  G+L ++  L+   A  N      +TPL  AC + R++ 
Sbjct: 130 ANPDAKDHYDATAMHRAAAK--GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187

Query: 183 VKYLIEHGADLNITNHYNNSCLMIAA 208
            K+L+  GA + I N    + L +A 
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  136 bits (345), Expect = 4e-40
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 8/195 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             A   G  H  +++ L+  G  VN       +PL  A   G  +IVK L+  GA +N  
Sbjct: 45  HWACSAG--HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           N    + L  AA K      +   L+  GA+ +      +T +  A   G L +V  L+ 
Sbjct: 103 NQNGCTPLHYAASKN--RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           + A  NI +   N+ L +A  +    +   K LV  GA +    K + TPL+ A   G L
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGL 216

Query: 181 DIVKYLIEHGADLNI 195
            ++   +  G + ++
Sbjct: 217 GLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  133 bits (335), Expect = 1e-38
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 4/179 (2%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
                A      ++ + ++   +    T+  + + L  A   G  H  +++ L+  G  V
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG--HTEIVEFLLQLGVPV 66

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           N       +PL  A   G  +IVK L+  GA +N  N    + L  AA K      +   
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN--RHEIAVM 124

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           L+  GA+ +      +T +  A   G L +V  L+ + A  NI +   N+ L +A  + 
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (360), Expect = 2e-43
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 20  AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
               ++    +    L  A   G+++ V+ L+E GAD N  N +    + +      G  
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA 57

Query: 80  SVIKTLVHAGADVNHSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
            V + L+  GA+ N +     T P+  A  +G LD +  L   GA L++ + +    + +
Sbjct: 58  QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

Query: 139 AAYKGAGHLSVIKTLVHAGAD 159
           A  +  GH  + + L  A  D
Sbjct: 118 AEEQ--GHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  129 bits (327), Expect = 2e-38
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 88  AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
               ++    +    L  A   G+++ V+ L+E GAD N  N +    + +      G  
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA 57

Query: 148 SVIKTLVHAGADVNHSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
            V + L+  GA+ N +     T P+  A  +G LD +  L   GA L++ + +    + +
Sbjct: 58  QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

Query: 207 AAYKG 211
           A  +G
Sbjct: 118 AEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  125 bits (317), Expect = 7e-37
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA +G   +  ++ L+ AGAD N   +    P++     G   + + L+ HGA+ N  
Sbjct: 17  ATAAARG--QVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA 73

Query: 61  NHYNNSC-LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
           +    +  +  AA +  G L  +  L  AGA ++        P+  A   G  DI +YL 
Sbjct: 74  DPATLTRPVHDAARE--GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131

Query: 120 EHGAD 124
               D
Sbjct: 132 AATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.9 bits (162), Expect = 5e-14
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
               ++    +    L  A   G+++ V+ L+E GAD N  N +    + +       V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQV 59

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  142 bits (361), Expect = 6e-43
 Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 9/175 (5%)

Query: 21  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
               + +    +        DG            AD+        +    AA K      
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKA--DEQ 58

Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMIA 139
            +  L+    DV+   +   T L      G    V+ L E GADL+  +       L +A
Sbjct: 59  ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
           A        V++ LV  GAD+    +   T L  A    +       ++ G  + 
Sbjct: 118 AGYV--RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  135 bits (342), Expect = 4e-40
 Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 28/190 (14%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           +I    G  H        +  ADV    +T   P   A        +  L+    D++  
Sbjct: 19  LIEWKDG--HSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLL-EDRDVDAV 72

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLI 119
           +    + L+  A  G      ++ L  AGAD++H   +   T L  A    R ++V+ L+
Sbjct: 73  DENGRTALLFVAGLG--SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           E GAD+ + +    + L +A        +     +  G  +                   
Sbjct: 131 ELGADIEVEDERGLTALELAREIL--KTTPKGNPMQFGRRIGL----------------- 171

Query: 180 LDIVKYLIEH 189
             ++  L   
Sbjct: 172 EKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 98.3 bits (246), Expect = 9e-26
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 7/124 (5%)

Query: 89  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
               + +    +        DG            AD+        +    AA K      
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKA--DEQ 58

Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMIA 207
            +  L+    DV+   +   T L      G    V+ L E GADL+  +       L +A
Sbjct: 59  ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 208 AYKG 211
           A   
Sbjct: 118 AGYV 121

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  139 bits (353), Expect = 5e-42
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 9/172 (5%)

Query: 21  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHL 79
           GA  N         L  A   G ++ VK L      +        ++ L  AA      +
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RV 55

Query: 80  SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
           SV++ L+  GADV+   K    PL  AC  G  ++ + L++HGA +N+ + +  + L  A
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115

Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           A K  G   + K L+  GAD     +  +TPL      G  DI   L    A
Sbjct: 116 AAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  125 bits (317), Expect = 2e-36
 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 2   IAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            AA  G   +  +K L      +       QSTPL  A    R+ +V+YL++HGAD++  
Sbjct: 14  EAAKAG--DVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +      L  A     GH  V + LV  GA VN +   + TPL  A   G+ +I K L++
Sbjct: 72  DKGGLVPLHNACSY--GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
           HGAD    N   N+ L +      G   +   L    A
Sbjct: 130 HGADPTKKNRDGNTPLDLVKD---GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (270), Expect = 2e-29
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA      +SV++ L+  GADV+   K    PL  AC  G  ++ + L++HGA +N+ 
Sbjct: 47  HFAAGYN--RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           + +  + L  AA K  G   + K L+  GAD     +  +TPL      G  DI   L  
Sbjct: 105 DLWKFTPLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161

Query: 121 HGA 123
             A
Sbjct: 162 DAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (255), Expect = 3e-27
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 89  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHL 147
           GA  N         L  A   G ++ VK L      +        ++ L  AA      +
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RV 55

Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
           SV++ L+  GADV+   K    PL  AC  G  ++ + L++HGA +N+ + +  + L  A
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115

Query: 208 AYKG 211
           A KG
Sbjct: 116 AAKG 119

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  113 bits (285), Expect = 4e-31
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 30/185 (16%)

Query: 33  TPLRAACYDGRLDIV-KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
           +PL  A  +  +  + K L   G +++       + L IAA     +L     L+ A  +
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD--NLEAAMVLMEAAPE 62

Query: 92  V-----NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 146
           +             T L  A  +  +++V+ L+  GA ++     +            G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG- 121

Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
                                  PL  A   G  +IV+ LIEHGAD+   +   N+ L I
Sbjct: 122 ---------------------EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160

Query: 207 AAYKG 211
              + 
Sbjct: 161 LILQP 165

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  135 bits (342), Expect = 2e-40
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L  A   G+ D V+ L+ +GA    T+    S L +AA  G  H S  + L+ AG   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSR 60

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           +  TK   TPL  A  +G  +IV+ L++HGAD+N  +    + L  A      H  V++ 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVEL 118

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L+  GADV+  +K   T    +  +G  D+ + L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  119 bits (302), Expect = 2e-34
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + AA  G      ++ L+  GA    +    ++PL  A   G     + L+  G   +  
Sbjct: 7   LEAARAG--QDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
              + + L +AA +  GH ++++ L+  GADVN     + T L  A      ++V+ LI+
Sbjct: 64  TKVDRTPLHMAASE--GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
           +GAD++  + +  +   I+     G+  + + L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDN--GNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  104 bits (263), Expect = 1e-28
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
             L  A   G+ D V+ L+ +GA    T+    S L +AA  G  H S  + L+ AG   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSR 60

Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           +  TK   TPL  A  +G  +IV+ L++HGAD+N  +    + L  A    
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  135 bits (343), Expect = 3e-40
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 18/184 (9%)

Query: 29  KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLV 86
            ++   + AA   G  +    L E G +   +   +N  L              +   L+
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNI-LYDVLRNNNDEARYKISMFLI 62

Query: 87  HAGADVNHSTKTQSTPLRAACYDGRLDI------VKYLIEHGADLNITNHYNNSCLMIAA 140
           + GAD+   TK  +T        G  DI       K  +E GAD+          +    
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 141 YKGAGHLSVIKT-------LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193
           +     +   +           +G  +    K   T L       +   +K + ++    
Sbjct: 123 FN--YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

Query: 194 NITN 197
           N+  
Sbjct: 181 NLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  107 bits (269), Expect = 3e-29
 Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 17/144 (11%)

Query: 1   MIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI------VKYLIE 52
                         +   L++ GAD+   TK  +T        G  DI       K  +E
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 53  HGADLNITNHYNNSCLMIAAYKGAGHLSVIKT-------LVHAGADVNHSTKTQSTPLRA 105
            GAD+          +    +     +   +           +G  +    K   T L  
Sbjct: 103 KGADITALYKPYKIVVFKNIFNY--FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

Query: 106 ACYDGRLDIVKYLIEHGADLNITN 129
                +   +K + ++    N+  
Sbjct: 161 VKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 32/115 (27%)

Query: 97  KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156
            ++   + AA   G  +    L E G +   +   +N            +          
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSN----------ILY---------- 43

Query: 157 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
                         LR    + R  I  +LI  GAD+        +        G
Sbjct: 44  ------------DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  128 bits (325), Expect = 3e-38
 Identities = 58/124 (46%), Positives = 75/124 (60%), Gaps = 4/124 (3%)

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA  G  HL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N 
Sbjct: 6   LHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
            +    + L +AA    GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+
Sbjct: 64  KDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 188 EHGA 191
           E GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  126 bits (319), Expect = 2e-37
 Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 4/123 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +AA  G  HL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N  
Sbjct: 7   HLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +    + L +AA    GHL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E
Sbjct: 65  DKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

Query: 121 HGA 123
            GA
Sbjct: 123 AGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  116 bits (293), Expect = 2e-33
 Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           TPL  A  +G L++VK L+E GAD+N  +    + L +AA  G  HL V+K L+ AGADV
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61

Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           N   K   TPL  A  +G L++VK L+E GAD+N  +    + L +AA  G
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  126 bits (319), Expect = 3e-37
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 54  GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 113
           G D   TNH   + L IA+ KG   +  ++ L+  G+D N       TPL  AC  G L 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKG--DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57

Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
           +V+ L++H A +N T + N+S L  AA    GH+ ++K L+  GA  N        P+  
Sbjct: 58  VVELLLQHKALVNTTGYQNDSPLHDAAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

Query: 174 ACYDGRLDIVKYLIEHGAD 192
              +    ++    ++ + 
Sbjct: 116 TDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (299), Expect = 3e-34
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 89  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
           G D   +     T L  A   G +  V+YL+++G+D N+ +H   + L  A   G  HL 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG--HLK 57

Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
           V++ L+   A VN +     +PL  A  +G +DIVK L+ +GA  N  N +    +    
Sbjct: 58  VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117

Query: 209 YKG 211
            + 
Sbjct: 118 DES 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  117 bits (297), Expect = 5e-34
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            IA+ KG   +  ++ L+  G+D N       TPL  AC  G L +V+ L++H A +N T
Sbjct: 15  HIASIKG--DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
            + N+S L  AA    GH+ ++K L+  GA  N        P+     +    ++    +
Sbjct: 73  GYQNDSPLHDAAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

Query: 121 HGAD 124
           + + 
Sbjct: 131 NESS 134

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  124 bits (313), Expect = 2e-36
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 32  STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
                 A  +G LD VK  +  G D+N T       L  AA    G L +++ L+  GAD
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGAD 65

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
           +N   K   TPL +A Y+G +  VK L+  GAD  +      +       +     ++++
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ--AIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  122 bits (308), Expect = 9e-36
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
                 A  +G LD VK  +  G D+N T       L  AA  G   L +++ L+  GAD
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG--QLEILEFLLLKGAD 65

Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212
           +N   K   TPL +A Y+G +  VK L+  GAD  +      +       + I
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  115 bits (292), Expect = 2e-33
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
            M A   G   L  +K  V  G DVN + +    PL  A   G+L+I+++L+  GAD+N 
Sbjct: 11  FMWALKNG--DLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
            + ++ + L+ A Y+  GH+S +K L+  GAD         T   A        +++
Sbjct: 69  PDKHHITPLLSAVYE--GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  113 bits (286), Expect = 2e-32
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           M A   G   L  +K  V  G DVN + +    PL  A   G+L+I+++L+  GAD+N  
Sbjct: 12  MWALKNG--DLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
           + ++ + L+ A Y+  GH+S +K L+  GAD         T   A        +++
Sbjct: 70  DKHHITPLLSAVYE--GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  126 bits (318), Expect = 8e-35
 Identities = 36/245 (14%), Positives = 64/245 (26%), Gaps = 45/245 (18%)

Query: 1   MIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
            +AA  G +  L  +  L+ +   V           R A  +G L ++  L E      +
Sbjct: 97  FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156

Query: 60  TNHYNN--SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS---TPLRAACYDGRLDI 114
                       +AA    GHL V+  L         +            AA   G  ++
Sbjct: 157 AMIQAENYHAFRLAAEN--GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214

Query: 115 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN------------- 161
           + +L++    L     +             G   V   +      +              
Sbjct: 215 INFLLDCPVMLAYAEIHEFE---------YGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265

Query: 162 -------HSTKTQSTPLRAACY---DGRLDIVKYLI-----EHGADLNITNHYNNSCLMI 206
                           LR       +  LD +++L+     +  A         N  L +
Sbjct: 266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

Query: 207 AAYKG 211
           A   G
Sbjct: 326 ALRLG 330

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  125 bits (314), Expect = 4e-34
 Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 19/215 (8%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           ++  Y    + +  + L          ++              LD +  L+     + + 
Sbjct: 66  LLCLYYAHYNRNAKQ-LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS--TPLRAACYDGRLDIVKYL 118
              N     +AA    GHL V+  L         +          R A  +G L ++  L
Sbjct: 125 QAENYQAFRLAAEN--GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

Query: 119 IEHGADLNITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 176
            E             N      AA    GH +VI  L+     + ++             
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGR-GHHNVINFLLDCPVMLAYA-------EIHEFE 234

Query: 177 DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
            G   +  ++  H   L       +    ++   G
Sbjct: 235 YGEKYVNPFIARHVNRLK----EMHDAFKLSNPDG 265

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  120 bits (302), Expect = 2e-32
 Identities = 40/241 (16%), Positives = 62/241 (25%), Gaps = 43/241 (17%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS--TPLRAACYDGRLDIVKYLIEHGADLN 58
            +AA  G  HL V+  L         +          R A  +G L ++  L E      
Sbjct: 133 RLAAENG--HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190

Query: 59  ITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
                  N      AA    GH +VI  L+     + ++              G   +  
Sbjct: 191 TAMIQAENYYAFRWAAVGR-GHHNVINFLLDCPVMLAYA-------EIHEFEYGEKYVNP 242

Query: 117 YLIEHGADLNITN--------------------HYNNSCLMIAAYKGA-GHLSVIKTLVH 155
           ++  H   L   +                          L     +     L  I+ L+ 
Sbjct: 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 302

Query: 156 -----AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
                A A         +  LR A   G       L+   + L +T   N     I    
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETG 359

Query: 211 G 211
           G
Sbjct: 360 G 360

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  119 bits (300), Expect = 3e-32
 Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 16/211 (7%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
            +   I   +    ++    +     L    Y       K L        I +       
Sbjct: 45  SYKEAIHIFLPGTKNMEQVRQ-----LLCLYYAHYNRNAKQLWSDAHKKGIKSEV---IC 96

Query: 69  MIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
            +AA  G +  L  +  L+ +   V           R A  +G L ++  L E      +
Sbjct: 97  FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156

Query: 128 TNHYNN--SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS---TPLRAACYDGRLDI 182
                       +AA    GHL V+  L         +            AA   G  ++
Sbjct: 157 AMIQAENYHAFRLAAEN--GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214

Query: 183 VKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
           + +L++    L     +            I 
Sbjct: 215 INFLLDCPVMLAYAEIHEFEYGEKYVNPFIA 245

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 98.9 bits (246), Expect = 2e-24
 Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 47/222 (21%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS---TPLRAACYDGRLDIVKYLIEHGADL 57
            +AA  G  HL V+  L         +            AA   G  +++ +L++    L
Sbjct: 168 RLAAENG--HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 58  NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN--------------------HSTK 97
                +             G   V   +      +                         
Sbjct: 226 AYAEIHEFE---------YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276

Query: 98  TQSTPLRAACY---DGRLDIVKYLI-----EHGADLNITNHYNNSCLMIAAYKGAGHLSV 149
                LR       +  LD +++L+     +  A         N  L +A   G  +   
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG--NQGA 334

Query: 150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
              L+   + +     T++         GRLD+    +EH  
Sbjct: 335 CALLLSIPSVLA---LTKANNYYINETGGRLDLRAVALEHHH 373

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  122 bits (308), Expect = 3e-34
 Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 46/233 (19%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAA---CYDGRLDIVKYLIEHG-----------ADLN 58
           +     +          T  T L  A     DG    +  L++             A   
Sbjct: 25  LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84

Query: 59  ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN-------------HSTKTQSTPLRA 105
              +  +S L IA  K    L  +K LV  GADV+                     PL  
Sbjct: 85  DEFYQGHSALHIAIEKR--SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142

Query: 106 ACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGA--------------GHLS 148
           A    + D+V YL+E+    A L  T+   N+ L                      G L 
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
           +   L         S     TPL+ A  +G+++I +++++        +H+++
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 99.1 bits (247), Expect = 3e-25
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 32/163 (19%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVN-------------HSTKTQSTPLRAACYDGRLDIV 47
            IA  K    L  +K LV  GADV+                     PL  A    + D+V
Sbjct: 95  HIAIEKR--SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 48  KYLIEHG---ADLNITNHYNNSCLMIAAYKGA--------------GHLSVIKTLVHAGA 90
            YL+E+    A L  T+   N+ L                      G L +   L     
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212

Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
               S     TPL+ A  +G+++I +++++        +H+++
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.0 bits (200), Expect = 1e-18
 Identities = 40/219 (18%), Positives = 61/219 (27%), Gaps = 61/219 (27%)

Query: 33  TPLRAACYDGRLDIVKYLIEH--------GADLNITNHYNNSCLMIAAYKG-AGHLSVIK 83
             L +    G  + +  L+E+                    +CLM A      G  + I 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 84  TLVHAG-----------ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 132
            L+              A          + L  A     L  VK L+E+GAD+++     
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 133 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-- 190
                       G                        PL  A    + D+V YL+E+   
Sbjct: 124 FFQKHQGTCFYFG----------------------ELPLSLAACTKQWDVVTYLLENPHQ 161

Query: 191 -ADLNITNHY----------------NNSCLMIAAYKGI 212
            A L  T+                   NS L+I  Y G+
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 27/171 (15%), Positives = 42/171 (24%), Gaps = 46/171 (26%)

Query: 63  YNNSCLMIAAYKG-----AGHLS-VIKTLVHAGADVNHSTKTQSTPLRAA---CYDGRLD 113
           ++   L     +G      G L  +     +          T  T L  A     DG   
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
            +  L++   D        N                        A          + L  
Sbjct: 61  CIMPLLQIDKDSGNPKPLVN------------------------AQCTDEFYQGHSALHI 96

Query: 174 ACYDGRLDIVKYLIEHGADLNITNHYNNSC-------------LMIAAYKG 211
           A     L  VK L+E+GAD+++                     L +AA   
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (299), Expect = 9e-33
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 60/260 (23%)

Query: 3   AAYKG-----AGHLSVIKTLVHAGADVNHS-TKTQSTPLRAA---CYDGRLDIVKYLIEH 53
           A  +         L  ++       D      +T  T L  A    ++G+ D +  L++ 
Sbjct: 20  AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79

Query: 54  GADLNITNHYNN-----------SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--- 99
               +    + N           + L IA  +   +++++  LV  GADV  +       
Sbjct: 80  ARKTDSLKQFVNASYTDSYYKGQTALHIAIERR--NMTLVTLLVENGADVQAAANGDFFK 137

Query: 100 -----------STPLRAACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKG-- 143
                        PL  A    +L IVK+L+++    AD++  +   N+ L         
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADN 197

Query: 144 ------------AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
                          L +   L         + +   TPL  A   G++ ++ Y+++   
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257

Query: 192 DLNITNHYNNSCLMIAAYKG 211
                      C   AA+  
Sbjct: 258 H-------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  100 bits (251), Expect = 8e-26
 Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 55/245 (22%)

Query: 20  AGADVNHSTKTQSTPLRAACYDGR-------LDIVKYLIEHGADLNITNHYN-NSCLMIA 71
             A            +  A            L  ++   +   D    +     +CL+ A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 72  AYKG-AGHLSVIKTLVHAGADVNHSTKTQ-----------STPLRAACYDGRLDIVKYLI 119
                 G    I  L+      +   +              T L  A     + +V  L+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 120 EHGADLNITNHYNNSC--------------LMIAAYKGAGHLSVIKTLVHAG---ADVNH 162
           E+GAD+    + +                 L +AA      L+++K L+      AD++ 
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT--NQLAIVKFLLQNSWQPADISA 179

Query: 163 STKTQSTPLRAAC----------------YDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
                +T L A                  Y+  L +   L        ITN    + L +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

Query: 207 AAYKG 211
           AA  G
Sbjct: 240 AASSG 244

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.6 bits (225), Expect = 5e-22
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 40/173 (23%)

Query: 2   IAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--------------STPLRAACYDGRLDIV 47
           IA  +   +++++  LV  GADV  +                    PL  A    +L IV
Sbjct: 107 IAIERR--NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

Query: 48  KYLIEHG---ADLNITNHYNNSCLMIAAYKG--------------AGHLSVIKTLVHAGA 90
           K+L+++    AD++  +   N+ L                        L +   L     
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224

Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
               + +   TPL  A   G++ ++ Y+++              C   AA+  
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  113 bits (286), Expect = 3e-32
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 11/142 (7%)

Query: 48  KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107
            +   HG+DL          L+ AA  G      ++ L+  GADVN   +   TPL  A 
Sbjct: 5   HHHHHHGSDLG-------KKLLEAARAG--QDDEVRILMANGADVNAKDEYGLTPLYLAT 55

Query: 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167
             G L+IV+ L+++GAD+N  +    + L +AA+ G  HL + + L+  GADVN   K  
Sbjct: 56  AHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG--HLEIAEVLLKHGADVNAQDKFG 113

Query: 168 STPLRAACYDGRLDIVKYLIEH 189
            T    +  +G  D+ + L + 
Sbjct: 114 KTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  111 bits (281), Expect = 2e-31
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)

Query: 17  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 76
             H G+D+          L  A   G+ D V+ L+ +GAD+N  + Y  + L +A   G 
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG- 58

Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
            HL +++ L+  GADVN       TPL  A + G L+I + L++HGAD+N  + +  +  
Sbjct: 59  -HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117

Query: 137 MIAAYKGAGHLSVIKTL 153
            I+     G+  + + L
Sbjct: 118 DISIGN--GNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  109 bits (276), Expect = 9e-31
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 9/127 (7%)

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
             H G+D+          L  A   G+ D V+ L+ +GAD+N  + Y  + L +A   G 
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG- 58

Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
            HL +++ L+  GADVN       TPL  A + G L+I + L++HGAD+N  + +  +  
Sbjct: 59  -HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117

Query: 205 MIAAYKG 211
            I+   G
Sbjct: 118 DISIGNG 124

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  103 bits (259), Expect = 3e-28
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + AA  G      ++ L+  GADVN   +   TPL  A   G L+IV+ L+++GAD+N  
Sbjct: 19  LEAARAG--QDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +    + L +AA+ G  HL + + L+  GADVN   K   T    +  +G  D+ + L +
Sbjct: 77  DAIGFTPLHLAAFIG--HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

Query: 121 H 121
            
Sbjct: 135 L 135

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (276), Expect = 5e-31
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 21  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
           G      +K  +TPL  A  +G  + VK L+  GAD+N  +   N+ L +AA    GH  
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAE 56

Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
           ++K L+  GADVN  +K  +TP   A  +G  +IVK L   GAD+N  +  ++   
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (276), Expect = 5e-31
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 89  GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
           G      +K  +TPL  A  +G  + VK L+  GAD+N  +   N+ L +AA  G  H  
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAE 56

Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
           ++K L+  GADVN  +K  +TP   A  +G  +IVK L   GAD+N  +  ++   
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.0 bits (248), Expect = 7e-27
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 54  GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 113
           G      +   N+ L  AA  G  H   +K L+  GADVN  +K  +TPL  A  +G  +
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNG--HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
           IVK L+  GAD+N  +   N+   +A     GH  ++K L   GADVN  +   S   
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKN--GHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.0 bits (235), Expect = 6e-25
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA  G  H   +K L+  GADVN  +K  +TPL  A  +G  +IVK L+  GAD+N  
Sbjct: 14  HNAAKNG--HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
           +   N+   +A     GH  ++K L   GADVN  +   S   
Sbjct: 72  SKDGNTPEHLAKKN--GHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.3 bits (197), Expect = 2e-19
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 122 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 181
           G      +   N+ L  AA  G  H   +K L+  GADVN  +K  +TPL  A  +G  +
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNG--HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 182 IVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           IVK L+  GAD+N  +   N+   +A   G
Sbjct: 57  IVKLLLAKGADVNARSKDGNTPEHLAKKNG 86

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  110 bits (275), Expect = 7e-29
 Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 17/213 (7%)

Query: 13  VIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
           V     +   ++N    +  +TPL        L++VK+L++HG++    ++   SCL+ A
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171

Query: 72  AYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPL----RAACYDGRLDIVKY-------- 117
                     +    L +    +        T L      +   G     KY        
Sbjct: 172 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231

Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
           +++       +                    L  +         +N       T L  A 
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
             G + IV  L+++GAD  I N      +   A
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.8 bits (204), Expect = 7e-19
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 13  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD-IVKYLIEHGADLNI-TNHYNNSCLMI 70
           +  +L +  ++ N    + +   +   +D  L  +         +LNI  + + N+ L  
Sbjct: 78  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137

Query: 71  AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG----RLDIVKYLIEHGADLN 126
                  +L ++K LV  G++  +      + L  A               L      L 
Sbjct: 138 LTSI--ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195

Query: 127 ITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGAD------------VNHSTKTQSTPLR 172
           + +  N + L          G  +  K  +                   +  +++     
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255

Query: 173 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
               D  L+ +         LN  +   ++CL IAA  G
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.6 bits (162), Expect = 3e-13
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 2/134 (1%)

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
           L ++K L     + N         L+   +    ++   L    ++ N     +N     
Sbjct: 43  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
            ++  +    V     +   ++N    +  +TPL        L++VK+L++HG++    +
Sbjct: 103 VSFD-SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161

Query: 198 HYNNSCLMIAAYKG 211
           +   SCL+ A    
Sbjct: 162 NMGESCLVKAVKSV 175

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 64.3 bits (156), Expect = 3e-12
 Identities = 22/156 (14%), Positives = 38/156 (24%), Gaps = 16/156 (10%)

Query: 1   MIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPL----RAACYDGRLDIVKY----- 49
           + A          +    L +    +        T L      +   G     KY     
Sbjct: 169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 228

Query: 50  ---LIEHGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLR 104
              +++       +                    L  +         +N       T L 
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 105 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
            A   G + IV  L+++GAD  I N      +   A
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (258), Expect = 1e-28
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
           TPL  A  +G L++VK L+E GAD+N  +    + L +AA    GHL V+K L+ AGADV
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADV 61

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
           N   K   TPL  A  +G L++VK L+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (258), Expect = 1e-28
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
           TPL  A  +G L++VK L+E GAD+N  +    + L +AA  G  HL V+K L+ AGADV
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61

Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
           N   K   TPL  A  +G L++VK L+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.3 bits (223), Expect = 2e-23
 Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L +AA  G  HL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N 
Sbjct: 6   LHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
            +    + L +AA    GHL V+K L+ AGA
Sbjct: 64  KDKNGRTPLHLAARN--GHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.0 bits (217), Expect = 2e-22
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 1  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           +AA  G  HL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N  
Sbjct: 7  HLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
          +    + L +AA    GHL V+K L+ AGA
Sbjct: 65 DKNGRTPLHLAARN--GHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.5 bits (200), Expect = 5e-20
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
           L +AA  G  HL V+K L+ AGADVN   K   TPL  A  +G L++VK L+E GAD+N 
Sbjct: 6   LHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 196 TNHYNNSCLMIAAYKG 211
            +    + L +AA  G
Sbjct: 64  KDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 6e-10
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           TPL  A  +G L++VK L+E GAD+N  +    + L +AA  G
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  100 bits (251), Expect = 2e-27
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 38  ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
                       L+  G+ +          L+ AA  G      ++ L+  GADV    K
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--QDDEVRILMANGADVAAKDK 55

Query: 98  TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
             STPL  A  +G L++VK L+E GAD+   + +  +   I+     G+  + + L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN--GNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.8 bits (247), Expect = 7e-27
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
                       L+  G+ +          L+ AA  G      ++ L+  GADV    K
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--QDDEVRILMANGADVAAKDK 55

Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             STPL  A  +G L++VK L+E GAD+   + +  +   I+   G
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.8 bits (247), Expect = 8e-27
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 3   AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 62
            +     H      LV  G+ +          L  A   G+ D V+ L+ +GAD+   + 
Sbjct: 1   GSSHH--HHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

Query: 63  YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
             ++ L +AA    GHL V+K L+ AGADV    K   T    +  +G  D+ + L
Sbjct: 56  NGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.8 bits (247), Expect = 8e-27
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 71  AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
            +     H      LV  G+ +          L  A   G+ D V+ L+ +GAD+   + 
Sbjct: 1   GSSHH--HHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             ++ L +AA  G  HL V+K L+ AGADV    K   T    +  +G  D+ + L
Sbjct: 56  NGSTPLHLAARNG--HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + AA  G      ++ L+  GADV    K  STPL  A  +G L++VK L+E GAD+   
Sbjct: 29  LEAARAG--QDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTL 85
           + +  +   I+     G+  + + L
Sbjct: 87  DKFGKTAFDISIDN--GNEDLAEIL 109

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.4 bits (240), Expect = 3e-24
 Identities = 39/230 (16%), Positives = 64/230 (27%), Gaps = 50/230 (21%)

Query: 1   MIAAYKG-AGHLSVIKTLVHAGAD-----------VNHSTKTQSTPLRAACYDGRLDIVK 48
             A     AG    I  L+                         T L  A        V+
Sbjct: 51  PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE 110

Query: 49  YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 108
            L+E GAD++                        +       D          PL  A  
Sbjct: 111 LLVEKGADVHAQA---------------------RGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 109 DGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGAGH-------LSVIKTLVHAGA 158
             +  IV YL E+G   ADL   +   N+ L                   +   L+   A
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

Query: 159 DVNHSTKTQS-------TPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
            +   T  ++       +PL  A   G++ I +++I         +H+++
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.8 bits (223), Expect = 7e-22
 Identities = 42/223 (18%), Positives = 61/223 (27%), Gaps = 51/223 (22%)

Query: 38  ACYDGRLDIVKYLIEHGADLNITNHYNNS----CLMIAAYKG-AGHLSVIKTLVHAGAD- 91
              DG   ++ +L+ H   L        S    CL  A     AG    I  L+      
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75

Query: 92  ----------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC------ 135
                              T L  A        V+ L+E GAD++               
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135

Query: 136 --------LMIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYDG------ 178
                   L +AA        ++  L    H  AD+       +T L A           
Sbjct: 136 YFYFGELPLSLAACT--NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTREN 193

Query: 179 ---RLDIVKYLIEHGADLN-------ITNHYNNSCLMIAAYKG 211
                 +   L+   A L        + N+   S LM+AA  G
Sbjct: 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.7 bits (162), Expect = 4e-13
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 4/172 (2%)

Query: 31  QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
            +   RA+ +   L  +   + HGAD+N  N   ++   +     A  L   + L+  GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 91  DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
           +VN +      PL  A   G   +    ++ GADL   +      L IA      +  ++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA--METANADIV 317

Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
             L  A      +   Q         D   D      +    L+  +H  ++
Sbjct: 318 TLLRLAKM--REAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHT 367

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 27/109 (24%), Positives = 44/109 (40%)

Query: 99  QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
            +   RA+ +   L  +   + HGAD+N  N   ++   +     A  L   + L+  GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
           +VN +      PL  A   G   +    ++ GADL   +      L IA
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.5 bits (138), Expect = 5e-10
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 8   AGHLSVIKTLVHAGADVN--HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 65
              L  +   +  GADVN  +  +  +TPL  A     L   ++L+++GA++N  +    
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR 269

Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
             L  A     GH  +    +  GAD+         PL  A      DIV  L
Sbjct: 270 GPLHHATI--LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.0 bits (129), Expect = 9e-09
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
           A  L   + L+  GA+VN +      PL  A   G   +    ++ GADL   +      
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304

Query: 68  LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
           L IA      +  ++  L  A      +   Q         D   D      +    L+ 
Sbjct: 305 LTIA--METANADIVTLLRLAKM--REAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 360

Query: 128 TNHYNNS 134
            +H  ++
Sbjct: 361 RSHDLHT 367

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 144 AGHLSVIKTLVHAGADVN--HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
              L  +   +  GADVN  +  +  +TPL  A     L   ++L+++GA++N  +    
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR 269

Query: 202 SCLMIAAYKG 211
             L  A   G
Sbjct: 270 GPLHHATILG 279

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 9/139 (6%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AG 77
           +  T  +   L  A     +  +      G DL       N      + L +A       
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183

Query: 78  HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 137
            L ++  LV    +++  T   ST L   C     + +K L+   A + I N    + L 
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243

Query: 138 IAAYKGAGHLSVIKTLVHA 156
           IA  K   H    + L  A
Sbjct: 244 IA--KRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AG 145
           +  T  +   L  A     +  +      G DL       N      + L +A       
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183

Query: 146 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
            L ++  LV    +++  T   ST L   C     + +K L+   A + I N    + L 
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243

Query: 206 IAAYKG 211
           IA    
Sbjct: 244 IAKRLK 249

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 11/120 (9%)

Query: 78  HLSVIKTLVHAGADVN------HSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNIT 128
            +  +      G D+       +  +   T L  A        L IV +L+++  +L+  
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201

Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
               ++ L         +   +K L+   A +  + ++  TPL  A         + L +
Sbjct: 202 TGKGSTALHYCCL--TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
              L ++  LV    +++  T   ST L   C     + +K L+   A + I N    + 
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241

Query: 68  LMIAAYKGAGHLSVIKTLVHA 88
           L IA  K   H    + L  A
Sbjct: 242 LDIA--KRLKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 11/122 (9%)

Query: 76  AGHLSVIKTLVHAGADVNHSTKTQ------STPLRAACYDGR---LDIVKYLIEHGADLN 126
              L  +      G D                 L  A        L +V ++I++G  L+
Sbjct: 161 NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD 220

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
                 N+ L  AA         +K L+   A V    +   T L  A      +  + L
Sbjct: 221 AKAADGNTALHYAAL--YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

Query: 187 IE 188
            +
Sbjct: 279 EQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 9/141 (6%)

Query: 26  HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AGH 78
                +   L  A  +  L  V     +G D        +        L +A        
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
           L ++  ++  G  ++      +T L  A    + D +K L++  A +   N    + L I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 139 AAYKGAGHLSVIKTLVHAGAD 159
           A  +   H    + L  A A 
Sbjct: 266 A--RKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.6 bits (131), Expect = 4e-09
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 94  HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AGH 146
                +   L  A  +  L  V     +G D        +        L +A        
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
           L ++  ++  G  ++      +T L  A    + D +K L++  A +   N    + L I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 207 AAYKG 211
           A  K 
Sbjct: 266 ARKKH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
              L ++  ++  G  ++      +T L  A    + D +K L++  A +   N    + 
Sbjct: 203 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262

Query: 68  LMIAAYKGAGHLSVIKTLVHAGAD 91
           L IA  +   H    + L  A A 
Sbjct: 263 LDIA--RKKHHKECEELLEQAQAG 284

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSC------LMIAAYKG-AGHLSVIKTLVH 155
           L  A  +  L  V     +G D        ++       L +A        L ++  ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
            G  ++      +T L  A    + D +K L++  A +   N    + L IA
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.1e-45  Score=271.60  Aligned_cols=220  Identities=25%  Similarity=0.277  Sum_probs=182.5

Q ss_pred             chhhccCC-------------cHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcH
Q psy8421           2 IAAYKGAG-------------HLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC   67 (237)
Q Consensus         2 l~~a~~~g-------------~~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~   67 (237)
                      |+.|+..|             +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        14 L~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   93 (253)
T 1yyh_A           14 LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP   93 (253)
T ss_dssp             --------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            56677666             99999999999999865 48899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHcCC-CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCC
Q psy8421          68 LMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH  146 (237)
Q Consensus        68 l~~a~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~  146 (237)
                      ||+|+..  ++.+++++|++.+. +++..+..|.||+|+|+..++.+++++|++.|++++..+..|.||||+|+..  ++
T Consensus        94 L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~  169 (253)
T 1yyh_A           94 LHAAVSA--DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV--NN  169 (253)
T ss_dssp             HHHHHHH--TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHH--TC
T ss_pred             HHHHHHc--CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CC
Confidence            9999977  99999999999887 8899999999999999999999999999999999999999999999999998  99


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccccc
Q psy8421         147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYP  226 (237)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~  226 (237)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|..  ++...+.+.++
T Consensus       170 ~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~--~i~~~l~~~~~  247 (253)
T 1yyh_A          170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH--DIVRLLDLEHH  247 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHC---
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH--HHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999976  56666665554


Q ss_pred             c
Q psy8421         227 S  227 (237)
Q Consensus       227 ~  227 (237)
                      .
T Consensus       248 ~  248 (253)
T 1yyh_A          248 H  248 (253)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.6e-44  Score=265.22  Aligned_cols=208  Identities=31%  Similarity=0.493  Sum_probs=201.3

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  |+.++
T Consensus        15 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~   92 (237)
T 3b7b_A           15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK--GHYEV   92 (237)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc--CCHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcC-CCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          82 IKTLVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        82 ~~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      +++|++.+ .+++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+..  ++.+++++|+++|.++
T Consensus        93 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~  170 (237)
T 3b7b_A           93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS--GCVDIAEILLAAKCDL  170 (237)
T ss_dssp             HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--CCHHHHHHHHTTTCCT
T ss_pred             HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCC
Confidence            99999998 78899999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      +.++..|.||||+|+..++.+++++|+++|++++.+|..|+||+|+|+..|..
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998854

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.4e-44  Score=264.58  Aligned_cols=208  Identities=25%  Similarity=0.352  Sum_probs=199.1

Q ss_pred             chhhccCCcHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVH----AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG   77 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~----~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~   77 (237)
                      |+.|++.|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  +
T Consensus        13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~   90 (241)
T 1k1a_A           13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH--R   90 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--T
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--C
Confidence            678999999999999997    7899999999999999999999999999999999999999999999999999965  9


Q ss_pred             CHHHHHHHHHcCC----CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHHHHcCCCCHHHHHH
Q psy8421          78 HLSVIKTLVHAGA----DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKT  152 (237)
Q Consensus        78 ~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~  152 (237)
                      +.+++++|++.+.    +++..+..|.+|+|+|+..++.+++++|++.|.+++..+ ..|.||+|+|+..  ++.+++++
T Consensus        91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~  168 (241)
T 1k1a_A           91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN--NSLSMVQL  168 (241)
T ss_dssp             CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT--TCHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc--CCHHHHHH
Confidence            9999999999887    788888999999999999999999999999999999888 7899999999988  99999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       153 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|..
T Consensus       169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence            9999999999999999999999999999999999999999999999999999999988754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.5e-43  Score=260.19  Aligned_cols=208  Identities=29%  Similarity=0.415  Sum_probs=198.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~-~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+++.+++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.+
T Consensus        10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~   87 (231)
T 3aji_A           10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA--GXDE   87 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHH
T ss_pred             HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc--CHHH
Confidence            6789999999999999988755 677889999999999999999999999999999999999999999999977  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|.+++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+..  ++.+++++|+++|.++
T Consensus        88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK--GNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      +.++..|.||||+|+..++.+++++|+++|++++.+|..|+||+++|+..+..
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  218 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL  218 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999876643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.7e-44  Score=268.78  Aligned_cols=207  Identities=21%  Similarity=0.190  Sum_probs=182.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGAD---VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH   78 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~---~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~   78 (237)
                      |+.|++.|+.+++++|++.|++   ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.  .++
T Consensus        13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~--~~~   90 (282)
T 1oy3_D           13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR--VRA   90 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT--TTC
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--cCC
Confidence            6889999999999999999988   78889999999999999999999999999999999999999999999994  499


Q ss_pred             HHHHHHHHHcCCC-----------------------------------------------CccCCCCCCCHHHHHHhcCC
Q psy8421          79 LSVIKTLVHAGAD-----------------------------------------------VNHSTKTQSTPLRAACYDGR  111 (237)
Q Consensus        79 ~~~~~~ll~~~~~-----------------------------------------------~~~~~~~~~~~l~~a~~~~~  111 (237)
                      .+++++|++.+..                                               ++..+..|.||||+|+..|+
T Consensus        91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  170 (282)
T 1oy3_D           91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD  170 (282)
T ss_dssp             HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCC
Confidence            9999999997754                                               56677889999999999999


Q ss_pred             HHHHHHHHHcCCCCccccC-CCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         112 LDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       112 ~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                      .+++++|+++|++++..+. .|.||||+|+..  ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus       171 ~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  248 (282)
T 1oy3_D          171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA--QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (282)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc--CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence            9999999999999998875 499999999988  9999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCcHHHHHHHhCc
Q psy8421         191 ADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       191 ~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      ++++.+|..|.||+++|.....
T Consensus       249 a~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          249 APEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCCCCCC---------------
T ss_pred             CCcCcCCCcccccccccCCccc
Confidence            9999999999999999997663

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.6e-45  Score=271.85  Aligned_cols=207  Identities=24%  Similarity=0.353  Sum_probs=170.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCh-hHHHHHHHcCCCccccCcCCCcHHHHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGAD--------VNHSTKTQSTPLRAACYDGRL-DIVKYLIEHGADLNITNHYNNSCLMIAA   72 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~--------~~~~~~~~~t~l~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~l~~a~   72 (237)
                      |..|++.|++++|++|++.|.+        ++..+..+.|||+.|+..+.. .++++|++.|++++.+|..|.||||+|+
T Consensus        15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~   94 (269)
T 4b93_B           15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA   94 (269)
T ss_dssp             HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            5678999999999999998875        345677889999999998876 4789999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHH
Q psy8421          73 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT  152 (237)
Q Consensus        73 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  152 (237)
                      ..  |+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+..  ++.+++++
T Consensus        95 ~~--g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~--g~~~~v~~  170 (269)
T 4b93_B           95 LH--GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG--GHHELVAL  170 (269)
T ss_dssp             HT--TCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT--TCGGGHHH
T ss_pred             Hc--CcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--CCHHHHHH
Confidence            66  999999999999999999999999999999999999999999999999999999999999999988  99999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       153 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      |+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.++.
T Consensus       171 Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          171 LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999999999999999987763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.7e-43  Score=265.78  Aligned_cols=203  Identities=26%  Similarity=0.385  Sum_probs=194.3

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.++
T Consensus        63 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~--~~~~~  140 (285)
T 3d9h_A           63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSWDC  140 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.|.+++.. ..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..  ++.+++++|+++|++++
T Consensus       141 v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          141 VNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN--QQRACVKKLLESGADVN  217 (285)
T ss_dssp             HHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT--TCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHCCCCCC
Confidence            99999999998754 4599999999999999999999999999999999999999999988  99999999999999998


Q ss_pred             CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHh
Q psy8421         162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK  210 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  210 (237)
                      . +..|.||||+|+..++.+++++|+++|++++.+|..|+||+|+|+..
T Consensus       218 ~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          218 Q-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             C-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence            5 88999999999999999999999999999999999999999999944

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.8e-43  Score=256.56  Aligned_cols=206  Identities=23%  Similarity=0.293  Sum_probs=194.2

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcC--CCccc-cCcCCCcHHHHHHHhCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHG--ADLNI-TNHYNNSCLMIAAYKGAG   77 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~~~~~l~~a~~~~~~   77 (237)
                      |+.|++.|+.+++++|++.+.++.. .+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+..  |
T Consensus         6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~--~   83 (228)
T 2dzn_A            6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV--G   83 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH--C
T ss_pred             HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc--C
Confidence            5789999999999999999988654 8899999999999999999999999999  66666 788999999999977  9


Q ss_pred             CHHHHHHHHHcC--CCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh
Q psy8421          78 HLSVIKTLVHAG--ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH  155 (237)
Q Consensus        78 ~~~~~~~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~  155 (237)
                      +.+++++|++.|  .+++..+..|.||+|.|+..++.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|++
T Consensus        84 ~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~  161 (228)
T 2dzn_A           84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV--GSLKLIELLCG  161 (228)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHT
T ss_pred             CHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHh
Confidence            999999999998  88888999999999999999999999999999999999999999999999988  99999999999


Q ss_pred             CC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHH-HcCCCcccccCCCCcHHHHHHHhC
Q psy8421         156 AG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       156 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      +| .+++.++..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|+..+
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            99 999999999999999999999999999999 889999999999999999997543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-42  Score=254.12  Aligned_cols=210  Identities=26%  Similarity=0.297  Sum_probs=194.2

Q ss_pred             CCcHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421           8 AGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV   86 (237)
Q Consensus         8 ~g~~~~~~~L~~~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll   86 (237)
                      .|+++++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll   78 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA--DAQGVFQILI   78 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHH
Confidence            47889999999999998765 78999999999999999999999999999999999999999999966  9999999999


Q ss_pred             HcCC-CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC
Q psy8421          87 HAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK  165 (237)
Q Consensus        87 ~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (237)
                      +.+. +++..+..+.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++.++.
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV--NNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT--TCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCcCC
Confidence            9887 8888899999999999999999999999999999999999999999999988  999999999999999999999


Q ss_pred             CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..  ++...+++
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--~i~~~L~~  212 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH--DIVRLLDE  212 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch--HHHHHHHH
Confidence            999999999999999999999999999999999999999999999865  44444444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-41  Score=256.97  Aligned_cols=205  Identities=27%  Similarity=0.400  Sum_probs=102.0

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      +.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+++
T Consensus        44 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~  121 (285)
T 1wdy_A           44 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKAL  121 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT--TCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh--CCHHHH
Confidence            334444444444444444444444444444444444444444444444444444444444444444444432  444444


Q ss_pred             HHHHHcCCCCccC----------CCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCchhHHHHHcCCCC----H
Q psy8421          83 KTLVHAGADVNHS----------TKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGH----L  147 (237)
Q Consensus        83 ~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~----~  147 (237)
                      ++|++.|.+++..          +..|.+|+|.|+..++.+++++|++. |.+++..+..|.||+|+|+..  ++    .
T Consensus       122 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~  199 (285)
T 1wdy_A          122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS--SDDSDVE  199 (285)
T ss_dssp             HHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC--SCTTTHH
T ss_pred             HHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc--cccchHH
Confidence            4444444444433          33344455555555555555555544 444444455555555555544  33    4


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHH-cCCCcccccCCCCcHHHHHHHhC
Q psy8421         148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       148 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      +++++|+++|.+++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..|
T Consensus       200 ~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            55555555555555555555555555555555555555555 45555555555555555555554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-41  Score=254.46  Aligned_cols=216  Identities=29%  Similarity=0.425  Sum_probs=203.2

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+++++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  |+.+
T Consensus         9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~   86 (285)
T 1wdy_A            9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA--GSVK   86 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHH
Confidence            67899999999999999999999887 78899999999999999999999999999999999999999999977  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc----------cCCCCchhHHHHHcCCCCHHHH
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT----------NHYNNSCLMIAAYKGAGHLSVI  150 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~  150 (237)
                      ++++|++.|.+++..+..|.||+|+|+..++.+++++|+++|.+++..          +..|.||+|+|+..  ++.+++
T Consensus        87 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v  164 (285)
T 1wdy_A           87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVL  164 (285)
T ss_dssp             HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH--TCHHHH
T ss_pred             HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc--CCHHHH
Confidence            999999999999999999999999999999999999999999998876          67899999999998  999999


Q ss_pred             HHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----hhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         151 KTLVHA-GADVNHSTKTQSTPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       151 ~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      ++|++. |.+++..+..|.||||+|+..++    .+++++|+++|++++.+|..|.||+|+|+..|..  .+...+++
T Consensus       165 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~  240 (285)
T 1wdy_A          165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL--GLVQRLLE  240 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH--HHHHHHHH
T ss_pred             HHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH--HHHHHHHh
Confidence            999987 99999999999999999999999    8999999999999999999999999999999854  45555554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.8e-42  Score=269.66  Aligned_cols=215  Identities=18%  Similarity=0.243  Sum_probs=199.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..  |+.++
T Consensus        24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~--g~~~~   99 (364)
T 3ljn_A           24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA--NKTDL   99 (364)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc--CCHHH
Confidence            6789999999999999999999999999999999999999999999999999996554  4789999999966  99999


Q ss_pred             HHHHHHc----CCCCcc-----------------CCCCCCCHHHHHHhcC--CHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421          82 IKTLVHA----GADVNH-----------------STKTQSTPLRAACYDG--RLDIVKYLIEHGADLNITNHYNNSCLMI  138 (237)
Q Consensus        82 ~~~ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~l~~  138 (237)
                      +++|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|+++|++++..+..|.||||+
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            9999998    777766                 7888999999999999  9999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         139 AAYKGAGHLSVIKTLVHAGAD-----VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       139 a~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      |+..  ++.+++++|+++|.+     ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|..
T Consensus       180 A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~  257 (364)
T 3ljn_A          180 AMEF--RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMV  257 (364)
T ss_dssp             HHHT--TCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCH
T ss_pred             HHHc--CCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Confidence            9988  999999999999988     999999999999999999999999999999999999999999999999999855


Q ss_pred             ccccCcccccc
Q psy8421         214 VGRVGPGLFDR  224 (237)
Q Consensus       214 ~~~~~~~~~~~  224 (237)
                        ++...|++.
T Consensus       258 --~~v~~Ll~~  266 (364)
T 3ljn_A          258 --LLTKELLQK  266 (364)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHc
Confidence              555555544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.2e-41  Score=262.95  Aligned_cols=201  Identities=26%  Similarity=0.377  Sum_probs=109.2

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI   82 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   82 (237)
                      +.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+++
T Consensus        63 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v  140 (351)
T 3utm_A           63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK--NRVEVC  140 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHH
Confidence            445555555555555555555555555555555555555555555555555555555555555555555533  555555


Q ss_pred             HHHHHcCCCCccCC------------------------------------------------------CCCCCHHHHHHh
Q psy8421          83 KTLVHAGADVNHST------------------------------------------------------KTQSTPLRAACY  108 (237)
Q Consensus        83 ~~ll~~~~~~~~~~------------------------------------------------------~~~~~~l~~a~~  108 (237)
                      ++|+++|++++..+                                                      ..+.||+|+|+.
T Consensus       141 ~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~  220 (351)
T 3utm_A          141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA  220 (351)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHH
Confidence            55555555443322                                                      223455555555


Q ss_pred             c---CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421         109 D---GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY  185 (237)
Q Consensus       109 ~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  185 (237)
                      .   +..+++++|++.|++++.++..|.||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus       221 ~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~  298 (351)
T 3utm_A          221 SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER--AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL  298 (351)
T ss_dssp             CCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            4   334555555555555555555555555555554  55555555555555555555555555555555555555555


Q ss_pred             HHHcCCCcccccCCCCcHHHHH
Q psy8421         186 LIEHGADLNITNHYNNSCLMIA  207 (237)
Q Consensus       186 Ll~~g~~~~~~~~~g~t~l~~a  207 (237)
                      |+++|++++.+|..|+||+++|
T Consensus       299 Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          299 LLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHS
T ss_pred             HHHcCCCCCCcCCCCCChhhhh
Confidence            5555555555555555555555

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=248.28  Aligned_cols=216  Identities=29%  Similarity=0.363  Sum_probs=200.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+++++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|+..  ++.+
T Consensus        13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~--~~~~   90 (240)
T 3eu9_A           13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ--GHLS   90 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH--TCHH
T ss_pred             HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc--CCHH
Confidence            678999999999999999999999999999999999999999999999999999888654 4599999999977  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|++++..+..|.+|+|.|+..++.+++++|+++|++++..+..|.||+|+|+..+ ...+++++|++.|.++
T Consensus        91 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A           91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT-HSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC-CSSTTHHHHHHTTCCT
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC-ChHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999762 4588999999999999


Q ss_pred             CCCCC-CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccc
Q psy8421         161 NHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLF  222 (237)
Q Consensus       161 ~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  222 (237)
                      +..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|..  .+...++
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~v~~L~  230 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV--WMINHLQ  230 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCH--HHHHHHH
T ss_pred             chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHH
Confidence            99887 899999999999999999999999999999999999999999999855  4444444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-41  Score=270.16  Aligned_cols=208  Identities=26%  Similarity=0.374  Sum_probs=176.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  |+.++
T Consensus       183 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~  260 (437)
T 1n11_A          183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE--GHAEM  260 (437)
T ss_dssp             HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC--CCHHH
Confidence            4566677777777777777777777777777777777777777777777777777777777888888888855  88888


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.+++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++
T Consensus       261 v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~gad~n  338 (437)
T 1n11_A          261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY--GNIKLVKFLLQHQADVN  338 (437)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS--SCSHHHHHHHHTTCCTT
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc--CcHHHHHHHHhcCCCCC
Confidence            8888888888888888888888888888888888888888888888888899999999987  88999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      .++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.
T Consensus       339 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             CCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcH
Confidence            9999999999999999999999999999999999999999999999988853

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-42  Score=270.81  Aligned_cols=219  Identities=23%  Similarity=0.337  Sum_probs=201.5

Q ss_pred             chhhccCCcHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421           2 IAAYKGAGHLSVIKTLV--------HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY   73 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~--------~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~   73 (237)
                      |+.|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.
T Consensus       129 Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  208 (373)
T 2fo1_E          129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA  208 (373)
T ss_dssp             HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Confidence            57899999998888776        7899999999999999999999999999999999999999999999999999996


Q ss_pred             hCCCCHHHHHHHHHcC---CCCccCCCCCCCHHHHHHhcC---CHHHHHHHHHcCCCCcc--------ccCCCCchhHHH
Q psy8421          74 KGAGHLSVIKTLVHAG---ADVNHSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNI--------TNHYNNSCLMIA  139 (237)
Q Consensus        74 ~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~L~~~~~~~~~--------~~~~~~t~l~~a  139 (237)
                      .  |+.+++++|++.+   .+++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|
T Consensus       209 ~--g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A  286 (373)
T 2fo1_E          209 N--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  286 (373)
T ss_dssp             T--TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             C--CCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHH
Confidence            6  9999999999987   788999999999999999998   89999999999999876        566899999999


Q ss_pred             HHcCCCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccC
Q psy8421         140 AYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVG  218 (237)
Q Consensus       140 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  218 (237)
                      +..  ++.+++++|++++ .+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|..  ++.
T Consensus       287 ~~~--g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~--~iv  362 (373)
T 2fo1_E          287 AQV--SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH--NIV  362 (373)
T ss_dssp             HSS--CCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH--HHH
T ss_pred             HHh--CCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH--HHH
Confidence            987  9999999999876 99999999999999999999999999999999999999999999999999999865  555


Q ss_pred             cccccccc
Q psy8421         219 PGLFDRYP  226 (237)
Q Consensus       219 ~~~~~~~~  226 (237)
                      ..|++..+
T Consensus       363 ~~Ll~~~a  370 (373)
T 2fo1_E          363 DIFDRCRP  370 (373)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHhcCc
Confidence            55555433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-42  Score=263.08  Aligned_cols=205  Identities=28%  Similarity=0.381  Sum_probs=191.7

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.|+..|+++++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  |+.++
T Consensus        44 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~--g~~~~  121 (299)
T 1s70_B           44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC--GYLDI  121 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--CCHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCc--------------------------cccCCCCc
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLN--------------------------ITNHYNNS  134 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~--------------------------~~~~~~~t  134 (237)
                      +++|+++|++++..+..|.||+|+|+..+..++++.++.. +.+++                          ..+..|.|
T Consensus       122 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t  201 (299)
T 1s70_B          122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (299)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence            9999999999999999999999999999999998877754 44332                          24567999


Q ss_pred             hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHh
Q psy8421         135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK  210 (237)
Q Consensus       135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  210 (237)
                      |||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..
T Consensus       202 ~L~~A~~~--g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          202 ALHVAAAK--GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHHHHHHH--TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HHHHHHHC--CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            99999998  999999999999999999999999999999999999999999999999999999999999999653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.2e-41  Score=260.06  Aligned_cols=219  Identities=28%  Similarity=0.352  Sum_probs=199.4

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+.+.++.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  |+.+
T Consensus        28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~  105 (351)
T 3utm_A           28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY--GHYE  105 (351)
T ss_dssp             HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC--CCHH
Confidence            5778999999999999865 788999999999999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-------------------------------
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-------------------------------  129 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-------------------------------  129 (237)
                      ++++|+++|++++..+..|.||+|+|+..++.+++++|+++|++++..+                               
T Consensus       106 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~  185 (351)
T 3utm_A          106 VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA  185 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHH
Confidence            9999999999999999999999999999999999999999998876544                               


Q ss_pred             -----------------------CCCCchhHHHHHcCC-CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421         130 -----------------------HYNNSCLMIAAYKGA-GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY  185 (237)
Q Consensus       130 -----------------------~~~~t~l~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  185 (237)
                                             ..|.||+|+|+.... +..+++++|+++|.+++.++..|.||||+|+..|+.+++++
T Consensus       186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  265 (351)
T 3utm_A          186 AREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV  265 (351)
T ss_dssp             HHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                                   456788888887632 45899999999999999999999999999999999999999


Q ss_pred             HHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         186 LIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       186 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      |+++|++++.+|..|+||||+|+..|..  ++...|++.
T Consensus       266 Ll~~ga~~n~~d~~g~t~L~~A~~~~~~--~~v~~Ll~~  302 (351)
T 3utm_A          266 LHKHGAKMNALDSLGQTALHRAALAGHL--QTCRLLLSY  302 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHHHc
Confidence            9999999999999999999999999854  455555544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-40  Score=266.26  Aligned_cols=216  Identities=29%  Similarity=0.393  Sum_probs=193.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.++
T Consensus       150 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~  227 (437)
T 1n11_A          150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ--NQVEV  227 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc--CCHHH
Confidence            5678888899999999998888888888889999999999999999999988888888888889999999965  89999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.|.+++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+..  ++.+++++|+++|.+++
T Consensus       228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~  305 (437)
T 1n11_A          228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE--GHVPVADVLIKHGVMVD  305 (437)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--TCHHHHHHHHHHTCCTT
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCccCC
Confidence            9999999999988888999999999999999999999999999999999999999999988  99999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      .++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|..  ++...|++
T Consensus       306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~--~iv~~Ll~  365 (437)
T 1n11_A          306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT--DIVTLLLK  365 (437)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH--HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998854  44444444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-40  Score=256.02  Aligned_cols=219  Identities=29%  Similarity=0.411  Sum_probs=191.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCChhHHHHHHHcCCCc-----------------------
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADL-----------------------   57 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~v~~Ll~~~~~~-----------------------   57 (237)
                      |+.|+++|++++|++|++.|++++..+. .|.||||+|+..|+.++|++|+++|+++                       
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  108 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLL  108 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhh
Confidence            6789999999999999999999998875 5899999999999999999999988764                       


Q ss_pred             ----------cccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccC----------CCCCCCHHHHHHhcCCHHHHHH
Q psy8421          58 ----------NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS----------TKTQSTPLRAACYDGRLDIVKY  117 (237)
Q Consensus        58 ----------~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~  117 (237)
                                +..+..|.||+|+|+..  ++.++++++++.|++++..          +..|.||||+|+..|+.+++++
T Consensus       109 ~~~~~~~~~~~~~d~~g~t~l~~A~~~--~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~  186 (337)
T 4g8k_A          109 KLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  186 (337)
T ss_dssp             HHHHTTTCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred             HHhhhccchhhhhccCCCCHHHHHHHc--CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHH
Confidence                      34567789999999965  9999999999999887643          3458899999999999999999


Q ss_pred             HHH-cCCCCccccCCCCchhHHHHHcCC--CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc-CCCc
Q psy8421         118 LIE-HGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADL  193 (237)
Q Consensus       118 L~~-~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~  193 (237)
                      |++ .|++++..+..|.|+++.++....  +...++++|+++|++++.++..|.||||+|+..|+.+++++|++. |+++
T Consensus       187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v  266 (337)
T 4g8k_A          187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI  266 (337)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT
T ss_pred             HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc
Confidence            996 599999999999999998776521  224688999999999999999999999999999999999999985 8999


Q ss_pred             ccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         194 NITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       194 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +.+|..|+||||+|+..|..  ++.+.|++.
T Consensus       267 n~~d~~G~TpL~~A~~~g~~--~iv~~Ll~~  295 (337)
T 4g8k_A          267 NDTDSDGKTALLLAVELKLK--KIAELLCKR  295 (337)
T ss_dssp             TCBCTTSCBHHHHHHHTTCH--HHHHHHHTT
T ss_pred             cCcCCCCCCHHHHHHHcCCH--HHHHHHHHC
Confidence            99999999999999999864  555555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=245.64  Aligned_cols=214  Identities=29%  Similarity=0.371  Sum_probs=178.9

Q ss_pred             chhhccCCcHHHHHHHHHcC-----------CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAG-----------ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI   70 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~-----------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~   70 (237)
                      +|.|+..|+.+.+..++..+           ..++..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+
T Consensus        19 lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   98 (285)
T 3d9h_A           19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE   98 (285)
T ss_dssp             -----------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHH
T ss_pred             HHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            68899999987777766543           2245678899999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHH
Q psy8421          71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI  150 (237)
Q Consensus        71 a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  150 (237)
                      |+..  |+.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++|.+++..+ .|.||||+|+..  ++.+++
T Consensus        99 A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~--g~~~~v  173 (285)
T 3d9h_A           99 ACLG--GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR--GHVECV  173 (285)
T ss_dssp             HHHT--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH--TCHHHH
T ss_pred             HHHC--CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc--CCHHHH
Confidence            9966  99999999999999999999999999999999999999999999999987544 599999999998  999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      ++|+++|.+++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..+..  ++...+++
T Consensus       174 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~--~~v~~Ll~  243 (285)
T 3d9h_A          174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE--ELACLLMD  243 (285)
T ss_dssp             HHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH--HHHHHHHH
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH--HHHHHHHH
Confidence            999999999999999999999999999999999999999999995 88999999999998855  44444444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.6e-39  Score=245.44  Aligned_cols=194  Identities=23%  Similarity=0.251  Sum_probs=178.2

Q ss_pred             CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCC---ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC
Q psy8421          24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS  100 (237)
Q Consensus        24 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  100 (237)
                      ++..|..|.||||+|+..|+.+++++|+++|.+   ++.++..|.||||+|+..  |+.+++++|+++|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~   79 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEASTVEKLYAAGAGVLVAERGGH   79 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCC
Confidence            356789999999999999999999999999988   788899999999999977  999999999999999999999999


Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCC-----------------------------------------------CccccCCCC
Q psy8421         101 TPLRAACYDGRLDIVKYLIEHGAD-----------------------------------------------LNITNHYNN  133 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~~~~~-----------------------------------------------~~~~~~~~~  133 (237)
                      ||||+|+..++.+++++|+++|.+                                               ++..+..|.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998754                                               566778899


Q ss_pred             chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      ||||+|+..  ++.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|.
T Consensus       160 t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          160 TPLHVAVIH--KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             CHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             CHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence            999999988  9999999999999999998865 9999999999999999999999999999999999999999999885


Q ss_pred             cccccCccccc
Q psy8421         213 DVGRVGPGLFD  223 (237)
Q Consensus       213 ~~~~~~~~~~~  223 (237)
                      .  ++...|++
T Consensus       238 ~--~~v~~Ll~  246 (282)
T 1oy3_D          238 P--ILARLLRA  246 (282)
T ss_dssp             H--HHHHHHHH
T ss_pred             c--HHHHHHHH
Confidence            4  44444443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-38  Score=232.92  Aligned_cols=189  Identities=24%  Similarity=0.264  Sum_probs=182.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..  ++.+
T Consensus        29 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~  106 (223)
T 2f8y_A           29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL--AVEG  106 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh--CcHH
Confidence            678999999999999999999999999999999999999999999999999987 8888999999999999977  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++|+++
T Consensus       107 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE--GSYETAKVLLDHFANR  184 (223)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc--CCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN  194 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  194 (237)
                      +.++..|.||+++|+..++.+++++|+++|+...
T Consensus       185 ~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          185 DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             ccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-38  Score=234.77  Aligned_cols=197  Identities=28%  Similarity=0.397  Sum_probs=184.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC
Q psy8421          22 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST  101 (237)
Q Consensus        22 ~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~  101 (237)
                      .+++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  |+.+++++|++.|.+++..+..|.|
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t   79 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLEAVKYLIKAGALVDPKDAEGST   79 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHTTTCCCCCCCTTSCC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh--CCHHHHHHHHhCCCCCCCCCCCCCc
Confidence            46778899999999999999999999999999999999999999999999966  9999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh
Q psy8421         102 PLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  180 (237)
Q Consensus       102 ~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  180 (237)
                      |+|+|+..++.+++++|++.| .+++..+..|.||+|+|+..  ++.+++++|+++|.+++.++..|.||||+|+..|+.
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY--KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            999999999999999999998 88899999999999999988  999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       181 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +++++|+++|++++.+|..|.||+|+|+..+..  ++...+++.
T Consensus       158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~  199 (237)
T 3b7b_A          158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRY--DCVVLFLSR  199 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH--hHHHHHHHc
Confidence            999999999999999999999999999998854  444444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-38  Score=221.48  Aligned_cols=159  Identities=40%  Similarity=0.501  Sum_probs=139.9

Q ss_pred             cHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCH
Q psy8421          33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  112 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  112 (237)
                      ++|+.||+.|+.++|++|+++|++++.+|..|.||||+|+..  ++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~--~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN--GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence            468889999999999999999999999999999999999965  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       113 ~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      +++++|+++|++++.++..|.||||+|+..  ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAEN--GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            999999999999999999999999999988  899999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q psy8421         193 LNI  195 (237)
Q Consensus       193 ~~~  195 (237)
                      ++-
T Consensus       162 ie~  164 (169)
T 4gpm_A          162 LEH  164 (169)
T ss_dssp             ---
T ss_pred             cCC
Confidence            764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.3e-39  Score=234.90  Aligned_cols=188  Identities=27%  Similarity=0.314  Sum_probs=181.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++.++..|.||||+|+..  ++.++
T Consensus        44 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~  121 (231)
T 3aji_A           44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK--NRHEI  121 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.|.+++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|++++
T Consensus       122 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE--ERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHC--CCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999988  99999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCc
Q psy8421         162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADL  193 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  193 (237)
                      .++..|.||+++|+..++.+++++|.++|+++
T Consensus       200 ~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          200 IENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             CCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999999999999999999999999987653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.8e-38  Score=233.31  Aligned_cols=190  Identities=18%  Similarity=0.263  Sum_probs=174.9

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCC-----ccCCCCCCCHH
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV-----NHSTKTQSTPL  103 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~l  103 (237)
                      .|.||||+|+..|+.+++++|++. |.+++.++..|.||||+|+..  |+.+++++|++.|+++     +..+..|.|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY--DNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc--CCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            488999999999999999999987 999999999999999999966  9999999999999876     56677899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccC-------------CCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCH
Q psy8421         104 RAACYDGRLDIVKYLIEHGADLNITNH-------------YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP  170 (237)
Q Consensus       104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~  170 (237)
                      |+|+..++.+++++|+++|++++..+.             .|.||||+|+..  ++.+++++|+++|++++.+|..|.||
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV--GSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            999999999999999999999988765             799999999998  99999999999999999999999999


Q ss_pred             HHHHHHcCChhHH----HHHHHcCCCc------ccccCCCCcHHHHHHHhCccccccCccccccc
Q psy8421         171 LRAACYDGRLDIV----KYLIEHGADL------NITNHYNNSCLMIAAYKGIDVGRVGPGLFDRY  225 (237)
Q Consensus       171 l~~a~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~  225 (237)
                      ||+|+..++.+++    ++|+++|+++      +.+|..|+||+|+|+..|..  ++...|+++.
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~--~~v~~Ll~~g  220 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI--VMFQHLMQKR  220 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH--HHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH--HHHHHHHhcC
Confidence            9999999999988    9999999998      68999999999999999965  5556666553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.3e-39  Score=243.46  Aligned_cols=207  Identities=16%  Similarity=0.128  Sum_probs=176.7

Q ss_pred             cCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421           7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV   86 (237)
Q Consensus         7 ~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll   86 (237)
                      ..+..++.++|.+.  +++..|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+  ..|+.+++++|+
T Consensus         9 ~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~--~~g~~~~v~~Ll   82 (285)
T 3kea_A            9 TWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAA--TLEDTKIVKILL   82 (285)
T ss_dssp             GCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHT--TSSSCHHHHHHH
T ss_pred             hcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHH--HcCCHHHHHHHH
Confidence            33444555555443  578889999999999999999999999999999988774  899999999  449999999999


Q ss_pred             HcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-CchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC
Q psy8421          87 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK  165 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (237)
                      +.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||+|+|+..  ++.+++++|+++|.+.... .
T Consensus        83 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~-~  159 (285)
T 3kea_A           83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML--NDVSIVSYFLSEIPSTFDL-A  159 (285)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT--TCHHHHHHHHTTSCTTCCC-S
T ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCccccc-c
Confidence            9999999999999999999999999999999999999999999888 7999999988  9999999999998776322 2


Q ss_pred             CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcH-HHHHHHhCccccccCcccccc
Q psy8421         166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC-LMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+|| +|+|+..|..  ++...+++.
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--~~v~~Ll~~  217 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--EMLQALFKY  217 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--HHHHHHTTS
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--HHHHHHHHc
Confidence            78899999999999999999999999999999999997 9999998854  444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.9e-40  Score=242.29  Aligned_cols=206  Identities=19%  Similarity=0.218  Sum_probs=184.3

Q ss_pred             CchhhccCCcHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCC
Q psy8421           1 MIAAYKGAGHLSVIKTLVHAGA----DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA   76 (237)
Q Consensus         1 ~l~~a~~~g~~~~~~~L~~~~~----~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~   76 (237)
                      .|+.|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  
T Consensus        11 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--   88 (236)
T 1ikn_D           11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ--   88 (236)
T ss_dssp             TTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH--
T ss_pred             hhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--
Confidence            3688999999999999998765    6888899999999999999999999999999999999999999999999977  


Q ss_pred             CCHHHHHHHHHcCCC------CccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccC-CCCchhHHHHHcCCCCHHH
Q psy8421          77 GHLSVIKTLVHAGAD------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGAGHLSV  149 (237)
Q Consensus        77 ~~~~~~~~ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~  149 (237)
                      |+.+++++|++.+.+      ++..+..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+..  ++.++
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~--~~~~~  166 (236)
T 1ikn_D           89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL--QNPDL  166 (236)
T ss_dssp             TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT--TCHHH
T ss_pred             CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence            999999999998865      466778899999999999999999999999999999887 899999999988  99999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcc--cccCCCCcHHHHHHHh
Q psy8421         150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN--ITNHYNNSCLMIAAYK  210 (237)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~~a~~~  210 (237)
                      +++|+++|++++.++..|.||||+|+..++.+++++|+++|+++.  ..+..|.||.+.+...
T Consensus       167 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999999999999999999999999999999876  8888899988766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.5e-38  Score=226.25  Aligned_cols=179  Identities=28%  Similarity=0.401  Sum_probs=104.2

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHh
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY  108 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~  108 (237)
                      .+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..  |+.+++++|++.|++++..+..|.||+|+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            34556666666666666665554443 5555555556666666644  55666666666665555555555666666666


Q ss_pred             cCCHHHHHHHH-HcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCC-----hh
Q psy8421         109 DGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYDGR-----LD  181 (237)
Q Consensus       109 ~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~  181 (237)
                      .++.+++++|+ ..+.+++..+..|.||+|+|+..  ++.+++++|+++| .+++.++..|.||||+|+..++     .+
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK--GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT--TCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            66666666555 33445555555556666666655  5556666666555 5555555556666666665555     55


Q ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         182 IVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       182 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      ++++|+++|++++.+|..|.||+|+|+..|.
T Consensus       160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          160 IVKLLMENGADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence            6666666666666666666666666665553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.8e-38  Score=230.52  Aligned_cols=193  Identities=26%  Similarity=0.359  Sum_probs=177.1

Q ss_pred             CCCCCCCCcHHHHHHHcCChhHHHHHHH----cCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC
Q psy8421          25 NHSTKTQSTPLRAACYDGRLDIVKYLIE----HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS  100 (237)
Q Consensus        25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  100 (237)
                      +..|..|.||||+|+..|+.+++++|++    .|.+++..+..|.||||+|+..  |+.+++++|++.|++++..+..|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCC
Confidence            4578899999999999999999999997    7899999999999999999966  999999999999999999999999


Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCC----CCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHH
Q psy8421         101 TPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAAC  175 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~  175 (237)
                      ||+|+|+..++.+++++|++.+.    +++..+..|.||+|+|+..  ++.+++++|+++|.+++..+ ..|.||||+|+
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT--ECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence            99999999999999999999987    7888899999999999998  99999999999999999988 78999999999


Q ss_pred             HcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       176 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      ..|+.+++++|+++|++++.+|..|.||+|+|+..|..  ++...+++
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~  204 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL--PLVRTLVR  204 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH--HHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHh
Confidence            99999999999999999999999999999999998864  44444444

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.9e-38  Score=233.89  Aligned_cols=185  Identities=24%  Similarity=0.269  Sum_probs=177.7

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..  ++.+
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~  138 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL--AVEG  138 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH--TCSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc--ChHH
Confidence            678999999999999999999999999999999999999999999999999987 8999999999999999977  8999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++|+++
T Consensus       139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~~  216 (253)
T 1yyh_A          139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE--GSYETAKVLLDHFANR  216 (253)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                      +.++..|.||+++|+..|+.+++++|....
T Consensus       217 ~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          217 DITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999999999998654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-39  Score=251.28  Aligned_cols=197  Identities=19%  Similarity=0.169  Sum_probs=167.2

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC---
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH---   78 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---   78 (237)
                      +.++..+..++++.|++.|++++. .+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..  |+   
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~--g~~~~  179 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS--VNNYD  179 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS--SHHHH
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh--ccccc
Confidence            345556678899999999999999 899999999999999999999999999999999999999999999965  66   


Q ss_pred             HHHHHHHHHcC-CCCccCCCCCCCHHHHHHh----cCCHHHHHHHHHc--------------------CCCCccccCCCC
Q psy8421          79 LSVIKTLVHAG-ADVNHSTKTQSTPLRAACY----DGRLDIVKYLIEH--------------------GADLNITNHYNN  133 (237)
Q Consensus        79 ~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~L~~~--------------------~~~~~~~~~~~~  133 (237)
                      .++++.|++.+ .+++..+..|.||||+|+.    .++.+++++|++.                    |++++..+..|.
T Consensus       180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~  259 (327)
T 1sw6_A          180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  259 (327)
T ss_dssp             TTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence            67778888766 6789999999999999999    8999999999987                    888999999999


Q ss_pred             chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                      ||+|.++.        +++|+++  +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus       260 t~L~~a~~--------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          260 DSILENLD--------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CHHHHHCS--------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             ChhHHHHH--------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            99999983        7888887  58889999999999999999999999999999999999999999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.2e-37  Score=222.67  Aligned_cols=185  Identities=25%  Similarity=0.395  Sum_probs=175.9

Q ss_pred             chhhccCCcHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~-~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+
T Consensus         9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~   86 (201)
T 3hra_A            9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ--GRTE   86 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred             HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHH
Confidence            577899999999999998886 8999999999999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHH-HcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCchhHHHHHcCCCC-----HHHHHHH
Q psy8421          81 VIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGH-----LSVIKTL  153 (237)
Q Consensus        81 ~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~-----~~~~~~l  153 (237)
                      ++++|+ ..+.+++..+..|.||+|+|+..++.+++++|+++| .+++..+..|.||+|+|+..  ++     .+++++|
T Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~~~v~~L  164 (201)
T 3hra_A           87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL--REGNQLYQDIVKLL  164 (201)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS--SCCSHHHHHHHHHH
T ss_pred             HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh--ccchhhHHHHHHHH
Confidence            999999 567789999999999999999999999999999998 89999999999999999988  65     8999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                      +++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus       165 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999999999999999999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.9e-39  Score=242.04  Aligned_cols=190  Identities=21%  Similarity=0.220  Sum_probs=178.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|+..|+.+++++|++.|++++..  +|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  |+.++
T Consensus        35 L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~--g~~~~  110 (285)
T 3kea_A           35 SYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS--GNMQT  110 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc--CCHHH
Confidence            67899999999999999999999877  489999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcCCCCccCCCCC-CCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      +++|++.|++++..+..| .||+|+|+..++.+++++|+++|.+.... ..|.||||+|+..  ++.+++++|+++|+++
T Consensus       111 v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~--g~~~~v~~Ll~~gad~  187 (285)
T 3kea_A          111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN--GHVDMMILLLDYMTST  187 (285)
T ss_dssp             HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc--ChHHHHHHHHHcCCCC
Confidence            999999999999999999 89999999999999999999999776322 2789999999988  9999999999999999


Q ss_pred             CCCCCCCCCH-HHHHHHcCChhHHHHHHHcCCCcccccC
Q psy8421         161 NHSTKTQSTP-LRAACYDGRLDIVKYLIEHGADLNITNH  198 (237)
Q Consensus       161 ~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  198 (237)
                      +.++..|.|| ||+|+..++.+++++|+++|++++..|.
T Consensus       188 n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence            9999999998 9999999999999999999999999874

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=239.02  Aligned_cols=187  Identities=28%  Similarity=0.435  Sum_probs=154.7

Q ss_pred             hhhccCCcH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           3 AAYKGAGHL-SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         3 ~~a~~~g~~-~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      +.|+..++. ++++.|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..  ++.++
T Consensus        57 ~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~--~~~~~  134 (269)
T 4b93_B           57 CQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ--GHFQV  134 (269)
T ss_dssp             ------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccccc--ChHHH
Confidence            445555554 588999999999999999999999999999999999999999999999999999999999976  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++
T Consensus       135 ~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE--KHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT--TCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHc--CCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999988  99999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCC-hhHHHHHHHcCCCc
Q psy8421         162 HSTKTQSTPLRAACYDGR-LDIVKYLIEHGADL  193 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~g~~~  193 (237)
                      .+|..|+||||+|+.+++ .++++.+...+..+
T Consensus       213 ~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          213 VLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             CCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             CcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence            999999999999988765 34444444445444

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.1e-37  Score=217.45  Aligned_cols=157  Identities=36%  Similarity=0.502  Sum_probs=147.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |..||+.|+.++|+.|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..  |+.++
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~--g~~~~   85 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN--GHKEV   85 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc--CCHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..  ++.+++++|+++|++++
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~--g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH--GNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTC-----
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999988  99999999999999986


Q ss_pred             C
Q psy8421         162 H  162 (237)
Q Consensus       162 ~  162 (237)
                      .
T Consensus       164 ~  164 (169)
T 4gpm_A          164 H  164 (169)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-38  Score=249.11  Aligned_cols=204  Identities=22%  Similarity=0.203  Sum_probs=187.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHc----CCCccc-----------------c
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH----GADLNI-----------------T   60 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~   60 (237)
                      |+.|+..|+.+++++|++.|++.+  +..|.||||+|+..|+.+++++|+++    |.+++.                 .
T Consensus        57 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (364)
T 3ljn_A           57 LHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK  134 (364)
T ss_dssp             HHHHHHHCCHHHHHHHHHHCCCCC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence            578999999999999999999654  35789999999999999999999998    888777                 8


Q ss_pred             CcCCCcHHHHHHHhCCC--CHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC-----CccccCCCC
Q psy8421          61 NHYNNSCLMIAAYKGAG--HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-----LNITNHYNN  133 (237)
Q Consensus        61 ~~~~~~~l~~a~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-----~~~~~~~~~  133 (237)
                      +..|.||||+|+..  |  +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|.
T Consensus       135 ~~~g~t~L~~A~~~--g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          135 HCKGQTALHWCVGL--GPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EESCCCHHHHHHHS--CGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCCHHHHHHHc--CCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            88999999999966  8  99999999999999999999999999999999999999999999988     999999999


Q ss_pred             chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCccc------------ccCCCC
Q psy8421         134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI------------TNHYNN  201 (237)
Q Consensus       134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~------------~~~~g~  201 (237)
                      ||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.            .+..++
T Consensus       213 t~L~~A~~~--g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (364)
T 3ljn_A          213 SHLHWAILI--NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW  290 (364)
T ss_dssp             CTTHHHHTT--TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred             cHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence            999999987  999999999999999999999999999999999999999999999887644            556788


Q ss_pred             cHHHHHHHhC
Q psy8421         202 SCLMIAAYKG  211 (237)
Q Consensus       202 t~l~~a~~~~  211 (237)
                      ||++.|+..|
T Consensus       291 ~~l~~aa~~~  300 (364)
T 3ljn_A          291 LDFVPAAADP  300 (364)
T ss_dssp             CTTSCSSCCH
T ss_pred             ccchhhhhcc
Confidence            8887776655

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.6e-37  Score=236.53  Aligned_cols=212  Identities=25%  Similarity=0.329  Sum_probs=186.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCC---------------------------------CCCCCCCcHHHHHHHcCChhHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVN---------------------------------HSTKTQSTPLRAACYDGRLDIVK   48 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~---------------------------------~~~~~~~t~l~~A~~~g~~~~v~   48 (237)
                      |+.|++.|+.+++++|+++|++++                                 ..+..|.||+|+|+..|+.++++
T Consensus        63 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~  142 (337)
T 4g8k_A           63 LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK  142 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHH
Confidence            578999999999999999987654                                 45667899999999999999999


Q ss_pred             HHHHcCCCcccc----------CcCCCcHHHHHHHhCCCCHHHHHHHHH-cCCCCccCCCCCCCHHHHHHhcCC----HH
Q psy8421          49 YLIEHGADLNIT----------NHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGR----LD  113 (237)
Q Consensus        49 ~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~----~~  113 (237)
                      +++++|++++..          +..|.||||+|+..  |+.+++++|++ .|++++..+..|.++++.++..+.    ..
T Consensus       143 ~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~--g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~  220 (337)
T 4g8k_A          143 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA  220 (337)
T ss_dssp             HHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH--TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHH
T ss_pred             HHHHcCCCcchhhccccccccccCCCCcHHHHHHHC--CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHH
Confidence            999999987653          44689999999977  99999999996 699999999999999998776543    45


Q ss_pred             HHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       114 ~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      ++++|+++|++++.++..|.||||+|+..  ++.++++.|++. |++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~--~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          221 ITHLLLDHGADVNVRGERGKTPLILAVEK--KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             HHHHHHHTTCCTTCCCGGGCCHHHHHHHT--TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHh--hhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            88999999999999999999999999988  999999999985 799999999999999999999999999999999999


Q ss_pred             cccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         193 LNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       193 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      ++.     .||+|+|+..|..  ++...|++.
T Consensus       299 ~n~-----~~~L~~A~~~~~~--~iv~~Ll~~  323 (337)
T 4g8k_A          299 TDC-----GDLVMTARRNYDH--SLVKVLLSH  323 (337)
T ss_dssp             STT-----CCHHHHHHHTTCH--HHHHHHHHT
T ss_pred             CCC-----CCHHHHHHHcCCH--HHHHHHHHC
Confidence            875     4699999998854  455555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.2e-37  Score=223.79  Aligned_cols=186  Identities=23%  Similarity=0.309  Sum_probs=171.0

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccc-cCcCCCcHHHHHHHhCCCCHHHHHHHHHcC--CCCcc-CCCCCCCHHHHH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAG--ADVNH-STKTQSTPLRAA  106 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~--~~~~~-~~~~~~~~l~~a  106 (237)
                      |.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+..  |+.+++++|++.|  .+++. .+..|.||+|+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc--CCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            78999999999999999999999887665 889999999999966  9999999999999  55555 778999999999


Q ss_pred             HhcCCHHHHHHHHHcC--CCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHH
Q psy8421         107 CYDGRLDIVKYLIEHG--ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK  184 (237)
Q Consensus       107 ~~~~~~~~~~~L~~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  184 (237)
                      +..++.+++++|+++|  .+++..+..|.||+|+|+..  ++.+++++|+++|.+++.++..|.||||+|+..|+.++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK--KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc--CCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998  88888999999999999988  9999999999999999999999999999999999999999


Q ss_pred             HHHHcC-CCcccccCCCCcHHHHHHHhCccccccCcccc
Q psy8421         185 YLIEHG-ADLNITNHYNNSCLMIAAYKGIDVGRVGPGLF  222 (237)
Q Consensus       185 ~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  222 (237)
                      +|++.| ++++.+|..|+||+|+|+..|..  ++...++
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~--~~v~~Ll  194 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHG--DAAVLLV  194 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCH--HHHHHHH
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCH--HHHHHHH
Confidence            999999 99999999999999999998854  4444444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.6e-38  Score=236.91  Aligned_cols=192  Identities=23%  Similarity=0.279  Sum_probs=173.7

Q ss_pred             chhhccCCcHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CChhHHHHHHHcCCCcccc----------
Q psy8421           2 IAAYKGAGHLS----VIKTLVHAGADVNH----STKTQSTPLRAACYD---GRLDIVKYLIEHGADLNIT----------   60 (237)
Q Consensus         2 l~~a~~~g~~~----~~~~L~~~~~~~~~----~~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~----------   60 (237)
                      |+.|++.|+.+    ++++|++.|++++.    .+..|.||||+|+..   |+.+++++|+++|++++..          
T Consensus         6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~   85 (256)
T 2etb_A            6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD   85 (256)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence            67899999997    66777789999998    899999999999999   9999999999998776533          


Q ss_pred             -CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCC-------------CCCHHHHHHhcCCHHHHHHHHH---cCC
Q psy8421          61 -NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-------------QSTPLRAACYDGRLDIVKYLIE---HGA  123 (237)
Q Consensus        61 -~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~L~~---~~~  123 (237)
                       +..|.||||+|+..  |+.+++++|++.|++++..+..             |.||||+|+..|+.+++++|++   +|+
T Consensus        86 ~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           86 EFYQGHSALHIAIEK--RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             TTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence             36799999999966  9999999999999999988876             9999999999999999999999   899


Q ss_pred             CCccccCCCCchhHHHHHcCCCCHH-------HHHHHHhCCCCC-------CCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         124 DLNITNHYNNSCLMIAAYKGAGHLS-------VIKTLVHAGADV-------NHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       124 ~~~~~~~~~~t~l~~a~~~~~~~~~-------~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      +++.++..|.||||+|+..+.++.+       ++++|+++|+++       +.+|..|.||||+|+..|+.+++++|+++
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            9999999999999999984348888       999999999998       88999999999999999999999999999


Q ss_pred             CCCccc
Q psy8421         190 GADLNI  195 (237)
Q Consensus       190 g~~~~~  195 (237)
                      |.++..
T Consensus       244 g~~~~~  249 (256)
T 2etb_A          244 EFSGAA  249 (256)
T ss_dssp             HHHHHH
T ss_pred             CCCCCC
Confidence            876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=9.7e-39  Score=235.34  Aligned_cols=193  Identities=26%  Similarity=0.292  Sum_probs=172.0

Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHHHHcCC----CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC
Q psy8421          26 HSTKTQSTPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST  101 (237)
Q Consensus        26 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~  101 (237)
                      ..|..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..  |+.+++++|++.|++++..+..|.|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t   80 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPEIAEALLGAGCDPELRDFRGNT   80 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT--TCHHHHHCCCSCCCCSCCCCTTCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            467889999999999999999999997765    6888999999999999966  9999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCC------CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHH
Q psy8421         102 PLRAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAA  174 (237)
Q Consensus       102 ~l~~a~~~~~~~~~~~L~~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a  174 (237)
                      |||+|+..++.+++++|++.|.+      ++..+..|.||||+|+..  ++.+++++|+++|++++.++. .|.||||+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH--GYLGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999875      456778899999999988  999999999999999999998 999999999


Q ss_pred             HHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         175 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       175 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +..|+.+++++|+++|++++.+|..|.||+++|+..|..  ++...|++.
T Consensus       159 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~~~~~Ll~~  206 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST--RIQQQLGQL  206 (236)
T ss_dssp             HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH--HHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch--HHHHHHHHc
Confidence            999999999999999999999999999999999988754  444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5.1e-38  Score=236.35  Aligned_cols=200  Identities=20%  Similarity=0.312  Sum_probs=167.8

Q ss_pred             chhhccCCcHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CChhHHHHHHHcCCCc-------cc----
Q psy8421           2 IAAYKGAGHLSVIKTLVH----AGADVN----HSTKTQSTPLRAACYD---GRLDIVKYLIEHGADL-------NI----   59 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~----~~~~~~----~~~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~-------~~----   59 (237)
                      |+.|++.|+.++++.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|+++|+++       +.    
T Consensus        17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~   96 (273)
T 2pnn_A           17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD   96 (273)
T ss_dssp             HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence            678999999999998887    455554    3578999999999987   9999999999987542       22    


Q ss_pred             cCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCC--------------CCCCHHHHHHhcCCHHHHHHHHH---cC
Q psy8421          60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK--------------TQSTPLRAACYDGRLDIVKYLIE---HG  122 (237)
Q Consensus        60 ~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~L~~---~~  122 (237)
                      .+..|.||||+|+..  |+.+++++|++.|++++..+.              .|.||||+|+..++.+++++|++   .|
T Consensus        97 ~d~~g~tpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  174 (273)
T 2pnn_A           97 SYYKGQTALHIAIER--RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP  174 (273)
T ss_dssp             TTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC
Confidence            566899999999966  999999999999999998886              79999999999999999999999   99


Q ss_pred             CCCccccCCCCchhHHHHHcCCCC---------HHHHHHHHhCCCCCC-------CCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         123 ADLNITNHYNNSCLMIAAYKGAGH---------LSVIKTLVHAGADVN-------HSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       123 ~~~~~~~~~~~t~l~~a~~~~~~~---------~~~~~~l~~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                      ++++.++..|.||||+|+..  ++         .+++++|+++|++++       .++..|.||||+|+..|+.+++++|
T Consensus       175 ad~~~~d~~g~tpLh~A~~~--~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  252 (273)
T 2pnn_A          175 ADISARDSVGNTVLHALVEV--ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI  252 (273)
T ss_dssp             CCTTCCCTTSCCHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCceeeCCCCCcHHHHHHHc--cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence            99999999999999999987  55         789999999999886       4899999999999999999999999


Q ss_pred             HHcCC-CcccccCCCCcHHH
Q psy8421         187 IEHGA-DLNITNHYNNSCLM  205 (237)
Q Consensus       187 l~~g~-~~~~~~~~g~t~l~  205 (237)
                      +++|+ ++......+.+|.+
T Consensus       253 l~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          253 LQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHTC--------------
T ss_pred             HHCCCCCchhhhhhhhhccC
Confidence            99999 88888777777653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=7.7e-38  Score=233.24  Aligned_cols=192  Identities=23%  Similarity=0.275  Sum_probs=170.7

Q ss_pred             CCCcHHHHHHHcCChh----HHHHHHHcCCCccc----cCcCCCcHHHHHHHh-CCCCHHHHHHHHHcCCCCccC-----
Q psy8421          30 TQSTPLRAACYDGRLD----IVKYLIEHGADLNI----TNHYNNSCLMIAAYK-GAGHLSVIKTLVHAGADVNHS-----   95 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~----~v~~Ll~~~~~~~~----~~~~~~~~l~~a~~~-~~~~~~~~~~ll~~~~~~~~~-----   95 (237)
                      .|.||||.|+..|+.+    ++++|++.|.+++.    .+..|.||||+|+.. ..|+.+++++|++.|++++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3789999999999997    55677778999998    899999999999943 128999999999988776533     


Q ss_pred             ------CCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCC-------------CCchhHHHHHcCCCCHHHHHHHHh-
Q psy8421          96 ------TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY-------------NNSCLMIAAYKGAGHLSVIKTLVH-  155 (237)
Q Consensus        96 ------~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~~~l~~-  155 (237)
                            +..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..  ++.+++++|++ 
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~  158 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT--KQWDVVTYLLEN  158 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT--TCHHHHHHHHHC
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc--CCHHHHHHHHhc
Confidence                  367999999999999999999999999999988876             99999999988  99999999999 


Q ss_pred             --CCCCCCCCCCCCCCHHHHHHH--cCChh-------HHHHHHHcCCCc-------ccccCCCCcHHHHHHHhCcccccc
Q psy8421         156 --AGADVNHSTKTQSTPLRAACY--DGRLD-------IVKYLIEHGADL-------NITNHYNNSCLMIAAYKGIDVGRV  217 (237)
Q Consensus       156 --~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~~~  217 (237)
                        +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||+|+|+..|..  ++
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~--~~  236 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI--EI  236 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH--HH
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCH--HH
Confidence              999999999999999999999  77888       999999999999       99999999999999999965  55


Q ss_pred             Cccccccc
Q psy8421         218 GPGLFDRY  225 (237)
Q Consensus       218 ~~~~~~~~  225 (237)
                      ...|+++.
T Consensus       237 v~~Ll~~g  244 (256)
T 2etb_A          237 FRHILQRE  244 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            55565553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-36  Score=230.60  Aligned_cols=216  Identities=27%  Similarity=0.331  Sum_probs=186.8

Q ss_pred             hhhccCCcHHHHHHHHHcCCCCCC---------CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421           3 AAYKGAGHLSVIKTLVHAGADVNH---------STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY   73 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~~~~---------~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~   73 (237)
                      ..+++.|+.+.++.++.....+..         .+..+.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI   82 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            346677888888888877655332         22356799999999999999999999999999999999999999996


Q ss_pred             hCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421          74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus        74 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                      .  |+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..  +..++++.+
T Consensus        83 ~--g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~l  158 (299)
T 1s70_B           83 D--DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE--AMEELLQNE  158 (299)
T ss_dssp             T--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH--HHHHHHHHH
T ss_pred             c--CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc--chHHHHHHH
Confidence            6  999999999999999999999999999999999999999999999999999999999999999977  888888766


Q ss_pred             HhC-CCC--------------------------CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHH
Q psy8421         154 VHA-GAD--------------------------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI  206 (237)
Q Consensus       154 ~~~-~~~--------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  206 (237)
                      +.. +.+                          ....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~  238 (299)
T 1s70_B          159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA  238 (299)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             HhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            542 222                          23456789999999999999999999999999999999999999999


Q ss_pred             HHHhCccccccCcccccc
Q psy8421         207 AAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       207 a~~~~~~~~~~~~~~~~~  224 (237)
                      |+..|..  ++...|++.
T Consensus       239 A~~~~~~--~~v~~Ll~~  254 (299)
T 1s70_B          239 AAHWGKE--EACRILVEN  254 (299)
T ss_dssp             HHHTTCH--HHHHHHHHT
T ss_pred             HHhcCCH--HHHHHHHHc
Confidence            9999865  444444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3e-36  Score=236.07  Aligned_cols=188  Identities=23%  Similarity=0.307  Sum_probs=176.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcC---CCccccCcCCCcHHHHHHHhCCC-
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGAG-   77 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~~~-   77 (237)
                      |+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++   .+++..+..|.||||+|+..  + 
T Consensus       170 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~--~~  247 (373)
T 2fo1_E          170 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN--EG  247 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS--CS
T ss_pred             HHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh--CC
Confidence            57899999999999999999999999999999999999999999999999987   78999999999999999965  5 


Q ss_pred             --CHHHHHHHHHcCCCCcc--------CCCCCCCHHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCchhHHHHHcCCCC
Q psy8421          78 --HLSVIKTLVHAGADVNH--------STKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGH  146 (237)
Q Consensus        78 --~~~~~~~ll~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~  146 (237)
                        +.+++++|++.|++++.        .+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..  ++
T Consensus       248 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~--g~  325 (373)
T 2fo1_E          248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE--GR  325 (373)
T ss_dssp             TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH--TC
T ss_pred             cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc--CC
Confidence              89999999999998875        5668999999999999999999999886 99999999999999999998  99


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCc
Q psy8421         147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL  193 (237)
Q Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  193 (237)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus       326 ~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999999999998763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5.6e-37  Score=230.64  Aligned_cols=199  Identities=22%  Similarity=0.251  Sum_probs=168.0

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHH----cCCCcc----ccCcCCCcHHHHHHHh-CCCCHHHHHHHHHcCCC
Q psy8421          21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIE----HGADLN----ITNHYNNSCLMIAAYK-GAGHLSVIKTLVHAGAD   91 (237)
Q Consensus        21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~----~~~~~~----~~~~~~~~~l~~a~~~-~~~~~~~~~~ll~~~~~   91 (237)
                      ++..+..+..|.||||+|+..|+.++|+.|++    .+.+++    ..+..|.||||+|+.. +.|+.+++++|++.|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            45566778899999999999999999998886    455554    3578899999999953 23899999999998754


Q ss_pred             C-------c----cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccC--------------CCCchhHHHHHcCCCC
Q psy8421          92 V-------N----HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH--------------YNNSCLMIAAYKGAGH  146 (237)
Q Consensus        92 ~-------~----~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~  146 (237)
                      +       +    ..+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..  ++
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~--g~  160 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT--NQ  160 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT--TC
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc--CC
Confidence            2       2    2566899999999999999999999999999998886              799999999988  99


Q ss_pred             HHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCC---------hhHHHHHHHcCCCcc-------cccCCCCcHHHHH
Q psy8421         147 LSVIKTLVH---AGADVNHSTKTQSTPLRAACYDGR---------LDIVKYLIEHGADLN-------ITNHYNNSCLMIA  207 (237)
Q Consensus       147 ~~~~~~l~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~a  207 (237)
                      .+++++|++   +|++++.+|..|+||||+|+..++         .+++++|+++|++++       .+|..|.||||+|
T Consensus       161 ~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999999   999999999999999999999988         799999999999996       5899999999999


Q ss_pred             HHhCccccccCccccc
Q psy8421         208 AYKGIDVGRVGPGLFD  223 (237)
Q Consensus       208 ~~~~~~~~~~~~~~~~  223 (237)
                      +..|..  ++...|++
T Consensus       241 ~~~g~~--~iv~~Ll~  254 (273)
T 2pnn_A          241 ASSGKI--GVLAYILQ  254 (273)
T ss_dssp             HHTTCH--HHHHHHHH
T ss_pred             HHhChH--HHHHHHHH
Confidence            999965  44444444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=217.97  Aligned_cols=190  Identities=26%  Similarity=0.357  Sum_probs=174.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~-~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      ++.|++.|+.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+
T Consensus        46 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~  123 (240)
T 3eu9_A           46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF--GHTS  123 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CHHH
Confidence            678999999999999999999987655 4499999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCC-HHHHHHHHHcCCCCccccC-CCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGR-LDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      ++++|++.|.+++..+..|.+|+|.|+..+. .+++++|++.|.+++..+. .|.||||+|+..  ++.+++++|+++|+
T Consensus       124 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~  201 (240)
T 3eu9_A          124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA--GNTTVISLLLEAGA  201 (240)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHH--TCHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHc--CCHHHHHHHHHcCC
Confidence            9999999999999999999999999996665 8999999999999998886 899999999998  99999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCccc
Q psy8421         159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI  195 (237)
Q Consensus       159 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  195 (237)
                      +++.++..|.||+++|+..++.+++++|++++.+...
T Consensus       202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            9999999999999999999999999999999887654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=8.6e-37  Score=228.03  Aligned_cols=192  Identities=21%  Similarity=0.222  Sum_probs=167.1

Q ss_pred             chhhccCCcHHHHHHHH----HcCCCCCCCC----CCCCcHHHHHH---HcCChhHHHHHHHcCCC-----------ccc
Q psy8421           2 IAAYKGAGHLSVIKTLV----HAGADVNHST----KTQSTPLRAAC---YDGRLDIVKYLIEHGAD-----------LNI   59 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~----~~~~~~~~~~----~~~~t~l~~A~---~~g~~~~v~~Ll~~~~~-----------~~~   59 (237)
                      |+.|++.|+.+.++.|+    +.|.+++..+    ..|.||||+|+   ..|+.+++++|++.|.+           .+.
T Consensus         9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~   88 (260)
T 3jxi_A            9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD   88 (260)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence            57899999999555444    5899888655    77999999999   77999999999998743           344


Q ss_pred             cCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC--------------CCCCCHHHHHHhcCCHHHHHHHHH---cC
Q psy8421          60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST--------------KTQSTPLRAACYDGRLDIVKYLIE---HG  122 (237)
Q Consensus        60 ~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~L~~---~~  122 (237)
                      .+..|.||||+|+..  |+.+++++|++.|++++..+              ..|.||||+|+..|+.+++++|++   .|
T Consensus        89 ~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           89 VYYRGQTALHIAIER--RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             SSEESBCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccCCCCHHHHHHHc--CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            556899999999966  99999999999999999888              579999999999999999999999   89


Q ss_pred             CCCccccCCCCchhHHHHHcCCCC-------HHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         123 ADLNITNHYNNSCLMIAAYKGAGH-------LSVIKTLVHAGADV-------NHSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       123 ~~~~~~~~~~~t~l~~a~~~~~~~-------~~~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      ++++.++..|.||||+|+..+.+.       .+++++|+++|+++       +.++..|.||||+|+..|+.+++++|++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  246 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR  246 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999872222       68999999999888       6799999999999999999999999999


Q ss_pred             cCCCccc
Q psy8421         189 HGADLNI  195 (237)
Q Consensus       189 ~g~~~~~  195 (237)
                      +|.++..
T Consensus       247 ~g~~~~~  253 (260)
T 3jxi_A          247 REIADAA  253 (260)
T ss_dssp             HHHHHHC
T ss_pred             hCCCccc
Confidence            9876543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.6e-35  Score=207.85  Aligned_cols=169  Identities=24%  Similarity=0.312  Sum_probs=154.2

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCC-ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  109 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  109 (237)
                      +.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..  |+.+++++|++.|++++..+..|.||+|+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF--GEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            46899999999999999999998877 788899999999999966  999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      ++.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            999999999999999999999999999999988  999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCCcH
Q psy8421         190 GADLNITNHYNNSC  203 (237)
Q Consensus       190 g~~~~~~~~~g~t~  203 (237)
                      |+++...+..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            99999999888887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.8e-36  Score=226.32  Aligned_cols=197  Identities=21%  Similarity=0.194  Sum_probs=171.3

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHH----HcCCCccccC----cCCCcHHHHHHHh-CCCCHHHHHHHHHcCCC-------
Q psy8421          28 TKTQSTPLRAACYDGRLDIVKYLI----EHGADLNITN----HYNNSCLMIAAYK-GAGHLSVIKTLVHAGAD-------   91 (237)
Q Consensus        28 ~~~~~t~l~~A~~~g~~~~v~~Ll----~~~~~~~~~~----~~~~~~l~~a~~~-~~~~~~~~~~ll~~~~~-------   91 (237)
                      +..+.++||.|+..|+.+.++.|+    +.|.+++..+    ..|.||||+|+.. ..|+.+++++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            456889999999999999655555    4899988765    6799999999932 23899999999998743       


Q ss_pred             ----CccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc--------------CCCCchhHHHHHcCCCCHHHHHHH
Q psy8421          92 ----VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--------------HYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus        92 ----~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                          .+..+..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..  ++.+++++|
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~L  159 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT--NQPHIVHYL  159 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT--TCHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHc--CCHHHHHHH
Confidence                34455589999999999999999999999999999988              5899999999988  999999999


Q ss_pred             Hh---CCCCCCCCCCCCCCHHHHHHHcCC---------hhHHHHHHHcCCCc-------ccccCCCCcHHHHHHHhCccc
Q psy8421         154 VH---AGADVNHSTKTQSTPLRAACYDGR---------LDIVKYLIEHGADL-------NITNHYNNSCLMIAAYKGIDV  214 (237)
Q Consensus       154 ~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~  214 (237)
                      ++   +|++++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..|.. 
T Consensus       160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~-  238 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI-  238 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH-
T ss_pred             HhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH-
Confidence            99   999999999999999999998887         69999999999999       78999999999999999965 


Q ss_pred             cccCcccccccccc
Q psy8421         215 GRVGPGLFDRYPSA  228 (237)
Q Consensus       215 ~~~~~~~~~~~~~~  228 (237)
                       ++...|+++.+..
T Consensus       239 -~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          239 -GIFQHIIRREIAD  251 (260)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhCCCc
Confidence             6677777665443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=4e-35  Score=209.42  Aligned_cols=163  Identities=26%  Similarity=0.351  Sum_probs=155.7

Q ss_pred             CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHH
Q psy8421          24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL  103 (237)
Q Consensus        24 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l  103 (237)
                      ++..|..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.+++++|++.|++++..+..|.||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN--NRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            466788999999999999999999999999999999999999999999966  999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHH
Q psy8421         104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV  183 (237)
Q Consensus       104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  183 (237)
                      |+|+..++.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|++++.++..|.||+|+|+..|+.+++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY--GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            999999999999999999999999999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHcC
Q psy8421         184 KYLIEHG  190 (237)
Q Consensus       184 ~~Ll~~g  190 (237)
                      ++|+++|
T Consensus       184 ~~Ll~~~  190 (192)
T 2rfm_A          184 KIFTEVR  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9999764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=224.15  Aligned_cols=185  Identities=23%  Similarity=0.317  Sum_probs=141.3

Q ss_pred             hhhccCCcHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHh---CC
Q psy8421           3 AAYKGAGHLSVIKTLVHAGAD--VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYK---GA   76 (237)
Q Consensus         3 ~~a~~~g~~~~~~~L~~~~~~--~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~---~~   76 (237)
                      +.|+..|+++.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+..   ..
T Consensus        81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~  160 (276)
T 4hbd_A           81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ  160 (276)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh
Confidence            345556777777777766555  66777778888888888888888888888776 7777777788888887732   11


Q ss_pred             CCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh-
Q psy8421          77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-  155 (237)
Q Consensus        77 ~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~-  155 (237)
                      ++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..  ++.+++++|++ 
T Consensus       161 ~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~--g~~~iv~~Ll~~  238 (276)
T 4hbd_A          161 DDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH--GHKEIAGLLLAV  238 (276)
T ss_dssp             HHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHTS
T ss_pred             hhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC--CCHHHHHHHHhc
Confidence            567777888887777777777778888888888888888888888888877777888888888877  77888888887 


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       156 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       239 ~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          239 PSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            7778877788888888888888888888887765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=228.00  Aligned_cols=211  Identities=18%  Similarity=0.190  Sum_probs=176.5

Q ss_pred             HHHHHHcCCCCCCCC---CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCC
Q psy8421          14 IKTLVHAGADVNHST---KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA   90 (237)
Q Consensus        14 ~~~L~~~~~~~~~~~---~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~   90 (237)
                      ++.|++.|++++..+   .++.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..  |+.+++++|++.|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG--ANYSIVDFLITAGA   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCC
Confidence            467888888876544   4566789999999999999999999999999999999999999966  99999999999999


Q ss_pred             CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHH--HHcCCCCHHHHHHHHhCCCCCCCCCCCC
Q psy8421          91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIA--AYKGAGHLSVIKTLVHAGADVNHSTKTQ  167 (237)
Q Consensus        91 ~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (237)
                      +++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||+|+|  +..  ++.+++++|+++|++++.++..+
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~--~~~~~v~~Ll~~ga~~~~~~~~~  156 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE--GYADCATYLADVEQSMGLMNSGA  156 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST--THHHHHHHHHHHHHHTTTSGGGE
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc--ChHHHHHHHHHcCCCcccccCCc
Confidence            999999999999999999999999999999999999986 6999999999  755  99999999999999999999999


Q ss_pred             CCHHHHHHHcCChhHHHHHHHcCCC--cccccCCCCcHHHHHHHhCccccccCcccccccccccccc
Q psy8421         168 STPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSN  232 (237)
Q Consensus       168 ~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  232 (237)
                      .||++.++....   .++|++.|++  ++.+|..|+||||+|+..|.. ..+...+++.||...+..
T Consensus       157 ~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~-~~v~~~~l~~~p~~~~~~  219 (229)
T 2vge_A          157 VYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQE-GYVPRNYFGLFPRVKPQR  219 (229)
T ss_dssp             EEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEE-EEEEGGGEESSCCCC---
T ss_pred             hHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCc-ceeehhhhhhCCCCCCch
Confidence            999986555443   3577888988  778899999999999999855 444455888888876653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.9e-34  Score=200.47  Aligned_cols=160  Identities=26%  Similarity=0.335  Sum_probs=152.8

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  109 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  109 (237)
                      .|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+..  |+.+++++|++.|++++..+..|.||+|+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH--GQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            578999999999999999999999999999999999999999966  999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      ++.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG--NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999999999999988  999999999999999999999999999999999999999999988


Q ss_pred             CCCc
Q psy8421         190 GADL  193 (237)
Q Consensus       190 g~~~  193 (237)
                      +.+.
T Consensus       158 ~~~~  161 (167)
T 3v31_A          158 LLKL  161 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.3e-34  Score=200.00  Aligned_cols=158  Identities=27%  Similarity=0.391  Sum_probs=149.2

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  109 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  109 (237)
                      ...|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+  . ++.+++++|++.|.+++.++..|.||+|+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK--L-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC--S-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHH--c-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            4668999999999999999999999999999999999999998  6 899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      ++.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|.+ ++.++..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999988  999999999999987 58999999999999999999999999999


Q ss_pred             cCCC
Q psy8421         189 HGAD  192 (237)
Q Consensus       189 ~g~~  192 (237)
                      +|++
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            9985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.6e-34  Score=199.41  Aligned_cols=159  Identities=34%  Similarity=0.500  Sum_probs=149.1

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421          28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~  107 (237)
                      ...+.++++.|+..|+.+++++|+++|.+++..+..|.||||+|+..  |+.+++++|++.|++++..+..|.||+|+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN--GHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            44567899999999999999999999999999999999999999966  9999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                      ..++.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++|++++.++..|.||+++|+..++.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999988  9999999999999999999999999999999999999999999


Q ss_pred             HcC
Q psy8421         188 EHG  190 (237)
Q Consensus       188 ~~g  190 (237)
                      +.|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=220.16  Aligned_cols=188  Identities=22%  Similarity=0.355  Sum_probs=172.0

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCC--ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCC-CCccCCCCCCCHHHHHH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~  107 (237)
                      ..+++|.|+..|+.+.++.+++.+.+  ++..|..|.||||+|+..  |+.+++++|++.|. +++..+..|.||+|+|+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH--ANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC--CCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            35677889999999999999887665  788999999999999966  99999999999998 99999999999999999


Q ss_pred             -----hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhH
Q psy8421         108 -----YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI  182 (237)
Q Consensus       108 -----~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  182 (237)
                           ..++.+++++|++.|...+..+..|.||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH--GRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence                 66889999999999999988899999999999988  99999999999999999999999999999999999999


Q ss_pred             HHHHHH-cCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         183 VKYLIE-HGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       183 ~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +++|++ .|++++.+|..|+||+|+|+..|..  ++...|+++
T Consensus       232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~  272 (276)
T 4hbd_A          232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQS--EIASMLYSR  272 (276)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHH
T ss_pred             HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH--HHHHHHHhc
Confidence            999999 8999999999999999999999865  455555443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1.6e-33  Score=198.91  Aligned_cols=168  Identities=27%  Similarity=0.297  Sum_probs=152.1

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421          29 KTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        29 ~~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~  107 (237)
                      ..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..  ++.+++++|++.|++++..+..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE--GRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc--CcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            3567899999999999999999987 567888999999999999965  8999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                      ..++.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++.++..|.||+++|+..++.+++++|+
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW--GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988  9999999999999999999999999999999999999999999


Q ss_pred             HcCCCcccccCCC
Q psy8421         188 EHGADLNITNHYN  200 (237)
Q Consensus       188 ~~g~~~~~~~~~g  200 (237)
                      ++|++++..+..+
T Consensus       159 ~~g~~~~~~~~~~  171 (179)
T 3f6q_A          159 KMGQNLNRIPYKD  171 (179)
T ss_dssp             HTTCCCSCBCCCC
T ss_pred             HhhcCcccCCccc
Confidence            9999998776544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=9.3e-34  Score=198.84  Aligned_cols=165  Identities=25%  Similarity=0.316  Sum_probs=152.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~-~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+.++++.|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~   83 (172)
T 3v30_A            6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG--GYTD   83 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC--CCHH
Confidence            6789999999999999999987 788899999999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+..  ++.+++++|++++.++
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL--GYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHh--CcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999988


Q ss_pred             CCCCCCCCCH
Q psy8421         161 NHSTKTQSTP  170 (237)
Q Consensus       161 ~~~~~~~~t~  170 (237)
                      ..++..+.||
T Consensus       162 ~~~~~~~~~p  171 (172)
T 3v30_A          162 FQSNLVPADP  171 (172)
T ss_dssp             SCC-------
T ss_pred             hcccCCCCCC
Confidence            8888877776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=7.2e-33  Score=193.74  Aligned_cols=152  Identities=33%  Similarity=0.532  Sum_probs=146.2

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.++
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~   95 (169)
T 2y1l_E           18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF--GHLEI   95 (169)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHH
Confidence            5779999999999999999999999999999999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG  157 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~  157 (237)
                      +++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+..  ++.+++++|+++|
T Consensus        96 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~G  169 (169)
T 2y1l_E           96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTC-
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh--CCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999988  9999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-32  Score=189.62  Aligned_cols=150  Identities=32%  Similarity=0.458  Sum_probs=129.4

Q ss_pred             CcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC
Q psy8421          32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR  111 (237)
Q Consensus        32 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  111 (237)
                      .+||+.|+..|+.+++++|+++|.+++ .+..|.||||+|+..  |+.+++++|++.|.+++..+..|.||+|+|+..++
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY--GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH--TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            478889999999999999988888776 577788899998866  88888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       112 ~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                      .+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            8888888888888888888888888888877  888888888888888888888888888888888888888876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=9.9e-33  Score=196.98  Aligned_cols=153  Identities=29%  Similarity=0.325  Sum_probs=147.4

Q ss_pred             ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchh
Q psy8421          57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL  136 (237)
Q Consensus        57 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l  136 (237)
                      ++.+|..|.||||+|+..  |+.+++++|++.+.+++..+..|.||+|+|+..++.+++++|+++|++++..+..|.|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACML--GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHH--TCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHc--CCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            456888999999999977  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       137 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      |+|+..  ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|..
T Consensus       106 ~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          106 MWSIIF--GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             HHHHHH--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence            999998  999999999999999999999999999999999999999999999999999999999999999999854

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=9.6e-33  Score=191.78  Aligned_cols=153  Identities=25%  Similarity=0.395  Sum_probs=145.6

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ++.|++.|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|.+++.++..|.||||+|+..  ++.++
T Consensus         9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~   85 (162)
T 1ihb_A            9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA--GFLDT   85 (162)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence            578999999999999999999999999999999999999 999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC-CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      +++|++.|.+++.++..|.||+|+|+..++.+++++|+++|.+ ++..+..|.||+|+|+..  ++.+++++|+++|++
T Consensus        86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~--~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY--GRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTC--
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc--CCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999987 588999999999999988  999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=5.2e-33  Score=193.72  Aligned_cols=160  Identities=28%  Similarity=0.380  Sum_probs=145.5

Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHHH-cCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421          27 STKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA  105 (237)
Q Consensus        27 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~  105 (237)
                      .+..+.|||+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..  ++.+++++|++.|.+++..+..|.||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY--NRVSVVEYLLQHGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc--ChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence            35668899999999999999999997 4567777888899999999966  99999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421         106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY  185 (237)
Q Consensus       106 a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  185 (237)
                      |+..++.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++|++++.++..|.||+|+|+. ++.+++++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence            9999999999999999999999999999999999988  99999999999999999999999999999876 89999999


Q ss_pred             HHHcCC
Q psy8421         186 LIEHGA  191 (237)
Q Consensus       186 Ll~~g~  191 (237)
                      |+++|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=100.00  E-value=5.7e-34  Score=210.16  Aligned_cols=182  Identities=19%  Similarity=0.197  Sum_probs=137.7

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHh
Q psy8421          29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY  108 (237)
Q Consensus        29 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~  108 (237)
                      ..|.||||.|+..|+.+.++.|+++|.+++.. ..+.||||.|+..  |+.+++++|++.|++++..+..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE--GEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHH--TCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            45899999999999999999999999999864 6789999999977  99999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHH--HHcCChhHHHH
Q psy8421         109 DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAA--CYDGRLDIVKY  185 (237)
Q Consensus       109 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~  185 (237)
                      .|+.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++.++..+. ||+|+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            9999999999999999999999999999999988  999999999999999999998877 999999  78899999999


Q ss_pred             HHHcCCCcccc---------cCCCCcHHHHHHHhCcccc
Q psy8421         186 LIEHGADLNIT---------NHYNNSCLMIAAYKGIDVG  215 (237)
Q Consensus       186 Ll~~g~~~~~~---------~~~g~t~l~~a~~~~~~~~  215 (237)
                      |+++|++++..         +..+.++.+++...|..+.
T Consensus       158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~  196 (239)
T 1ycs_B          158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMT  196 (239)
T ss_dssp             HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEE
T ss_pred             HHHhhhcccccccceEEEEeccCCCCCCcccccCCCEEE
Confidence            99999988776         5668899998888775443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=4.4e-32  Score=191.53  Aligned_cols=162  Identities=25%  Similarity=0.381  Sum_probs=153.3

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.+
T Consensus         9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~   86 (179)
T 3f6q_A            9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH--GHRD   86 (179)
T ss_dssp             HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHH
Confidence            5789999999999999998 567899999999999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+..  ++.+++++|+++|.++
T Consensus        87 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~--~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           87 IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP--LRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHH--HHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHH--HHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999988  9999999999999999


Q ss_pred             CCCCCCC
Q psy8421         161 NHSTKTQ  167 (237)
Q Consensus       161 ~~~~~~~  167 (237)
                      +..+..+
T Consensus       165 ~~~~~~~  171 (179)
T 3f6q_A          165 NRIPYKD  171 (179)
T ss_dssp             SCBCCCC
T ss_pred             ccCCccc
Confidence            8765543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.8e-32  Score=190.38  Aligned_cols=155  Identities=26%  Similarity=0.368  Sum_probs=148.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.++
T Consensus         7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~   84 (167)
T 3v31_A            7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK--GYTDI   84 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CCHHH
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      +++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+..  ++.+++++|++++.++
T Consensus        85 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL--GYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998  9999999999876543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=1e-31  Score=185.46  Aligned_cols=153  Identities=26%  Similarity=0.394  Sum_probs=141.3

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  109 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  109 (237)
                      +.|||+.|+..|+.+++++|++. +.+++..+..|.||||+ +  ..|+.+++++|++.|++++..+..|.||+|+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M--MFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S--CTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H--HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            45899999999999999999987 44888899999999999 7  44999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      |+.+++++|+++|++++..+..|.||+|+|+..  ++.+++++|+++ .+++.++..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh--ChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999999999988  999999999999 99999999999999999999999999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-33  Score=217.00  Aligned_cols=204  Identities=15%  Similarity=0.132  Sum_probs=159.5

Q ss_pred             cCCcHHHHHHHHHcCCCCCCC-----------------CCCCCcHHHHHHHcCChhHHHHHHHcCCCccc-cCcCCCcHH
Q psy8421           7 GAGHLSVIKTLVHAGADVNHS-----------------TKTQSTPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCL   68 (237)
Q Consensus         7 ~~g~~~~~~~L~~~~~~~~~~-----------------~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~l   68 (237)
                      ..|+.++++.|++.|++++..                 .....+..|.|+..+..+++++|++.|++++. .+..|.|||
T Consensus        56 ~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL  135 (327)
T 1sw6_A           56 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL  135 (327)
T ss_dssp             CHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH
T ss_pred             cCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH
Confidence            348999999999999886541                 11112335778888888999999999999999 899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC---HHHHHHHHHcC-CCCccccCCCCchhHHHHH---
Q psy8421          69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR---LDIVKYLIEHG-ADLNITNHYNNSCLMIAAY---  141 (237)
Q Consensus        69 ~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~---  141 (237)
                      |+|+..  |+.+++++|++.|++++.++..|.||||+|+..|+   .++++.|++.+ .+++.++..|.||||+|+.   
T Consensus       136 h~Aa~~--g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~  213 (327)
T 1sw6_A          136 HWLTSI--ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG  213 (327)
T ss_dssp             HHHHHT--TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHT
T ss_pred             HHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcc
Confidence            999966  99999999999999999999999999999999998   67888888875 6788999999999999998   


Q ss_pred             -cCCCCHHHHHHHHhC--------------------CCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCC
Q psy8421         142 -KGAGHLSVIKTLVHA--------------------GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN  200 (237)
Q Consensus       142 -~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  200 (237)
                       .  ++.+++++|++.                    |++++.++..|.||||.|+.      +++|+++  +++.+|..|
T Consensus       214 ~~--g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G  283 (327)
T 1sw6_A          214 MT--GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNG  283 (327)
T ss_dssp             ST--TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTS
T ss_pred             cc--ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCC
Confidence             5  899999999987                    88999999999999999985      8999988  588999999


Q ss_pred             CcHHHHHHHhCccccccCcccccc
Q psy8421         201 NSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       201 ~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      +||||+|+..|..  ++...|++.
T Consensus       284 ~TpLh~A~~~g~~--~~v~~Ll~~  305 (327)
T 1sw6_A          284 DTCLNIAARLGNI--SIVDALLDY  305 (327)
T ss_dssp             CCHHHHHHHHCCH--HHHHHHHHT
T ss_pred             CCHHHHHHHcCCH--HHHHHHHHc
Confidence            9999999999965  555555544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-31  Score=183.96  Aligned_cols=147  Identities=23%  Similarity=0.366  Sum_probs=140.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++.++
T Consensus         6 L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~   82 (153)
T 1awc_B            6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE--GHANI   82 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--ChHHH
Confidence            578899999999999999999876 588899999999999999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                      +++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+..  ++.+++++|
T Consensus        83 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~--~~~~i~~~L  152 (153)
T 1awc_B           83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN--GNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999988  999999887

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.98  E-value=6.1e-35  Score=213.71  Aligned_cols=179  Identities=20%  Similarity=0.182  Sum_probs=163.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..  |+.++
T Consensus        25 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~--g~~~~  102 (229)
T 2vge_A           25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC--NDTVI  102 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence            5779999999999999999999999999999999999999999999999999999999999999999999966  99999


Q ss_pred             HHHHHHcCCCCccCC-CCCCCHHHHH--HhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          82 IKTLVHAGADVNHST-KTQSTPLRAA--CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      +++|++.|++++..+ ..|.||+|+|  +..++.+++++|++.|++++..+..+.++++.++..  .   ..++|++.|.
T Consensus       103 v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~--~---~~~~ll~~ga  177 (229)
T 2vge_A          103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE--F---GDELSFREGE  177 (229)
T ss_dssp             HHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCS--S---TTBCCBCTTC
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhc--c---ccccCccccc
Confidence            999999999999886 6999999999  999999999999999999999999999999866544  2   2367788888


Q ss_pred             C--CCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         159 D--VNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       159 ~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                      +  ++.+|..|+||||+|+..|+.++++..+
T Consensus       178 ~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          178 SVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             EEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            7  6788999999999999999999987644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.9e-30  Score=180.71  Aligned_cols=152  Identities=31%  Similarity=0.401  Sum_probs=141.0

Q ss_pred             chhhccCCcHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~-~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      ++.|++.|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|.+++.++..|.||||+|+..  ++.+
T Consensus        12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~   89 (165)
T 3twr_A           12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY--GHYE   89 (165)
T ss_dssp             HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc--CcHH
Confidence            578899999999999998 4566777888899999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      ++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+  . ++.+++++|+++|+
T Consensus        90 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           90 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--D-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC--T-TCHHHHHHHHTC--
T ss_pred             HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh--c-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999999999999975  2 78899999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=2.7e-30  Score=178.27  Aligned_cols=149  Identities=24%  Similarity=0.331  Sum_probs=141.6

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      ++.|++.|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..  |+.+
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~   82 (156)
T 1bd8_A            6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART--GFLD   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred             HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--CcHH
Confidence            5789999999999999998 34889999999999999 999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      ++++|++.|++++.++..|.||+|+|+..++.+++++|++. .+++..+..|.||+++|+..  ++.+++++|+++
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~  155 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQR--GAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHS--CCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999 99999999999999999988  999999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=2.2e-33  Score=207.06  Aligned_cols=200  Identities=17%  Similarity=0.173  Sum_probs=144.7

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.++++.|++.|++++. +..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..  |+.++
T Consensus         9 L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--g~~~~   85 (239)
T 1ycs_B            9 LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA--GHTEI   85 (239)
T ss_dssp             -----------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH--TCHHH
T ss_pred             CchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHH
Confidence            5778999999999999999999985 47789999999999999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC-chhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN-SCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      +++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..+. ||+|+|.....++.+++++|+++|.++
T Consensus        86 v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B           86 VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  165 (239)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999987777 999999333338899999999999887


Q ss_pred             CCC---------CCCCCCHHHHHHHcCChhHHHHHHHcCCC------cccccCCCCcHHHH
Q psy8421         161 NHS---------TKTQSTPLRAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMI  206 (237)
Q Consensus       161 ~~~---------~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~  206 (237)
                      +..         +..+.++.+++...|.  +++.+.+.+.+      ....++.|.+|.++
T Consensus       166 ~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~y  224 (239)
T 1ycs_B          166 GIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNL  224 (239)
T ss_dssp             TTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGG
T ss_pred             cccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHH
Confidence            765         5567888888877765  33334433333      12344445555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.1e-29  Score=171.19  Aligned_cols=132  Identities=25%  Similarity=0.362  Sum_probs=74.1

Q ss_pred             CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCC-CCc
Q psy8421          56 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY-NNS  134 (237)
Q Consensus        56 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-~~t  134 (237)
                      +++..+..|.||||+|+..  |+.+++++|++.|.+++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAAR--GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHc--CCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            4444444455555555533  44555555555554444444555555555555 5555555555555555555555 566


Q ss_pred             hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      |||+|+..  ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAARE--GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHH--TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            66666655  556666666666666666666666666666666666666666666553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=3.2e-30  Score=177.90  Aligned_cols=138  Identities=23%  Similarity=0.288  Sum_probs=64.0

Q ss_pred             CCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCc-hhHHHHH
Q psy8421          63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMIAAY  141 (237)
Q Consensus        63 ~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t-~l~~a~~  141 (237)
                      .|.||||+|+..  |+.+++++|++.|.+++..+..|.||||+|+ .++.+++++|+++|++++.++..|.| |||+|+.
T Consensus        11 ~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           11 PSADWLATAAAR--GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CSTTHHHHHHHH--TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             cchHHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            344444444433  4444444444444444444444444444442 44444444444444444444545554 5555555


Q ss_pred             cCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHH
Q psy8421         142 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM  205 (237)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  205 (237)
                      .  ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||.+
T Consensus        88 ~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           88 E--GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             H--TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             C--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            5  5555555555555555556666666666666666666666666666666666666666654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1e-29  Score=171.39  Aligned_cols=134  Identities=24%  Similarity=0.359  Sum_probs=129.0

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCC-C
Q psy8421          21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-Q   99 (237)
Q Consensus        21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~-~   99 (237)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+  . ++.+++++|++.|++++.++.. |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM--M-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTST--T-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHH--c-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            5678899999999999999999999999999999999999999999999999  7 9999999999999999999999 9


Q ss_pred             CCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421         100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus       100 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      .||||+|+..++.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|++
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ--GHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH--TCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999998  999999999998875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=3.2e-30  Score=182.51  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=139.7

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCH----HHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHL----SVIKTLVHAGADVNHSTKTQSTPLRA  105 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~l~~  105 (237)
                      +.++|+.|++.|+.+.++.++..+.+  ..+ ..|.||||+|+..  ++.    +++++|++.|++++.++..|.||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~--~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRN--NNDEARYKISMFLINKGADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTC--SCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHc--CCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45789999999999999999887643  344 6799999999944  664    58999999999999999999999999


Q ss_pred             HHhcCC------HHHHHHHHHcCCCCccccCCCC-chhHHHHHcCC---CCHHHHHHHHh-CCCCCCCCCCCCCCHHHHH
Q psy8421         106 ACYDGR------LDIVKYLIEHGADLNITNHYNN-SCLMIAAYKGA---GHLSVIKTLVH-AGADVNHSTKTQSTPLRAA  174 (237)
Q Consensus       106 a~~~~~------~~~~~~L~~~~~~~~~~~~~~~-t~l~~a~~~~~---~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a  174 (237)
                      |+..++      .+++++|+++|++++.+|..|. ||+|+|+..+.   +..+++++|++ +|++++.+|..|.||||+|
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            998886      6789999999999999999999 99999997421   34579999999 9999999999999999999


Q ss_pred             HHcCChhHHHHHHHcCCCccccc
Q psy8421         175 CYDGRLDIVKYLIEHGADLNITN  197 (237)
Q Consensus       175 ~~~~~~~~~~~Ll~~g~~~~~~~  197 (237)
                      +..++.+++++|.+...+.+.++
T Consensus       162 ~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHcCCHHHHHHHHHHHHHHhccc
Confidence            99999999999998765555544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=6.5e-30  Score=176.38  Aligned_cols=145  Identities=25%  Similarity=0.330  Sum_probs=120.1

Q ss_pred             CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC-HH
Q psy8421          25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST-PL  103 (237)
Q Consensus        25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~l  103 (237)
                      ...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .  ++.+++++|++.|++++.++..|.| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~--~~~~~v~~Ll~~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M--GSARVAELLLLHGAEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T--TCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c--CCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            345778999999999999999999999999999999999999999984 3  8999999999999999999999999 99


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy8421         104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA  174 (237)
Q Consensus       104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  174 (237)
                      |+|+..++.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+++|++++.++..|.||.+.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL--GHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHHSSCC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh--CHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            999999999999999999999999999999999999998  999999999999999999999999987643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1.5e-29  Score=179.01  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=137.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCh----hHHHHHHHcCCCccccCcCCCcHHHHHHHhCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRL----DIVKYLIEHGADLNITNHYNNSCLMIAAYKGA   76 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~-~~~~t~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~   76 (237)
                      |+.|++.|+++.++.++..+.+  ..+ ..|.||||+|+..|+.    +++++|+++|++++.++..|.||||+|+..+.
T Consensus        10 l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~   87 (186)
T 3t8k_A           10 VSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG   87 (186)
T ss_dssp             HHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred             HHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            5678999999999999987743  344 6799999999999975    59999999999999999999999999997732


Q ss_pred             CC----HHHHHHHHHcCCCCccCCCCCC-CHHHHHHhcC-----CHHHHHHHHH-cCCCCccccCCCCchhHHHHHcCCC
Q psy8421          77 GH----LSVIKTLVHAGADVNHSTKTQS-TPLRAACYDG-----RLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAG  145 (237)
Q Consensus        77 ~~----~~~~~~ll~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~L~~-~~~~~~~~~~~~~t~l~~a~~~~~~  145 (237)
                      ..    .+++++|++.|++++.++..|. ||||+|+..+     ..+++++|++ +|++++.++..|.||+|+|+..  +
T Consensus        88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~--~  165 (186)
T 3t8k_A           88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC--Q  165 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT--T
T ss_pred             cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc--C
Confidence            21    6899999999999999999999 9999999954     3569999999 9999999999999999999977  9


Q ss_pred             CHHHHHHHHhCCCCCCCC
Q psy8421         146 HLSVIKTLVHAGADVNHS  163 (237)
Q Consensus       146 ~~~~~~~l~~~~~~~~~~  163 (237)
                      +.+++++|.++....+.+
T Consensus       166 ~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          166 KPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            999999998765444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=2.7e-31  Score=206.82  Aligned_cols=145  Identities=17%  Similarity=0.131  Sum_probs=99.3

Q ss_pred             chhhccCCcHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCc---cccCcCCCcHHHHHHHhC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADV---NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL---NITNHYNNSCLMIAAYKG   75 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~---~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~   75 (237)
                      |+.|++.|+.+++++|++.|+..   +..+..|.||||+|+..|+.++|++|+++|+++   +..+.. .||||+|+.. 
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~-  173 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN-  173 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC-
Confidence            46677778888888888777632   233445667888888888888888888877652   222222 7788888854 


Q ss_pred             CCCHHHHHHHHHcCCCCcc--CCCCCCCHHHHHH-hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHH
Q psy8421          76 AGHLSVIKTLVHAGADVNH--STKTQSTPLRAAC-YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT  152 (237)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~  152 (237)
                       |+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|.       .+.||+++|+..  |+.+++++
T Consensus       174 -G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~--g~~evv~l  243 (376)
T 2aja_A          174 -GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEY--GEKYVNPF  243 (376)
T ss_dssp             -TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTT--TTTTHHHH
T ss_pred             -CCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHC--CCHHHHHH
Confidence             788888888887777665  6666778888888 8888888888877552       266777777766  77777777


Q ss_pred             HHhCCC
Q psy8421         153 LVHAGA  158 (237)
Q Consensus       153 l~~~~~  158 (237)
                      |+++|.
T Consensus       244 L~~~ga  249 (376)
T 2aja_A          244 IARHVN  249 (376)
T ss_dssp             HHHHHH
T ss_pred             HHhcCc
Confidence            776554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.3e-27  Score=156.81  Aligned_cols=125  Identities=46%  Similarity=0.677  Sum_probs=68.1

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG  110 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~  110 (237)
                      |.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.+++++|++.|.+++.                
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~----------------   63 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNA----------------   63 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTC----------------
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CcHHHHHHHHHcCCCCcc----------------
Confidence            45555555555555555555555555555555555555555543  555555555555544444                


Q ss_pred             CHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         111 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       111 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                                       ++..|.||+|+|+..  ++.+++++|+++|.+++.++..|.||+++|+..++.+++++|+++|
T Consensus        64 -----------------~~~~g~t~l~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           64 -----------------KDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             -----------------CCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             -----------------cCCCCCcHHHHHHHc--ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence                             444455555555544  4555555555555555555555555555555555555555555555


Q ss_pred             CC
Q psy8421         191 AD  192 (237)
Q Consensus       191 ~~  192 (237)
                      ++
T Consensus       125 ad  126 (126)
T 1n0r_A          125 AY  126 (126)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.8e-27  Score=156.52  Aligned_cols=114  Identities=42%  Similarity=0.623  Sum_probs=108.2

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q psy8421          98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  177 (237)
Q Consensus        98 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  177 (237)
                      +|.||||.|+..++.+++++|+++|.+++..+..|.||+|+|+..  ++.+++++|+++|.+++.++..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence            478999999999999999999999999999999999999999988  999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         178 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       178 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      ++.+++++|+++|++++.+|..|.||+++|+..+..
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  114 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL  114 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH
Confidence            999999999999999999999999999999998854

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.8e-27  Score=160.40  Aligned_cols=123  Identities=31%  Similarity=0.505  Sum_probs=71.7

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  109 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  109 (237)
                      .+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.+++++|++.|++++..+..|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH--GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            455666666666666666666666666666666666666666644  566666666666665555555555555555555


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      ++.+++++|+++|++++..+..|.||+++|+..  ++.+++++|+++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~--~~~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN--GNEDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC--CCHHHHHHHHHc
Confidence            555555555555555555555555555555544  555555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=6.2e-27  Score=157.69  Aligned_cols=126  Identities=32%  Similarity=0.423  Sum_probs=115.3

Q ss_pred             CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHH
Q psy8421          61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA  140 (237)
Q Consensus        61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~  140 (237)
                      ...+.||||+|+..  |+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARA--GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHh--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            44578999999976  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                      ..  ++.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|
T Consensus        89 ~~--~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FI--GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             Hc--CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88  9999999999999999999999999999999999999999998875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=9e-31  Score=203.86  Aligned_cols=181  Identities=17%  Similarity=0.143  Sum_probs=147.7

Q ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCc---cccCcCCCcHHHHHHHhCCCCHHHHHH
Q psy8421           8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL---NITNHYNNSCLMIAAYKGAGHLSVIKT   84 (237)
Q Consensus         8 ~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~~~   84 (237)
                      .++.++++++++.|.+       +.||||+|+..|+.+++++|+++|...   +..+..+.||||+|+..  |+.+++++
T Consensus        76 ~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~--G~~eiv~~  146 (376)
T 2aja_A           76 RNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN--GHLHVLNR  146 (376)
T ss_dssp             TTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc--CCHHHHHH
Confidence            5677777777777654       359999999999999999999998732   23445678999999966  99999999


Q ss_pred             HHHcCCCC---ccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcc--ccCCCCchhHHHH-HcCCCCHHHHHHHHhCCC
Q psy8421          85 LVHAGADV---NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI--TNHYNNSCLMIAA-YKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        85 ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~~~l~~~~~  158 (237)
                      |++.|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..  |+.+++++|++.|.
T Consensus       147 Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~--G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          147 LCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR--GHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT--CCHHHHHHHTTSHH
T ss_pred             HHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC--CCHHHHHHHHhCCC
Confidence            99999752   222233 8999999999999999999999999877  7888999999999 98  99999999998764


Q ss_pred             CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421         159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG  211 (237)
Q Consensus       159 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  211 (237)
                             .+.||+|.|+..|+.+++++|+++|++++..+.    +++.|+..|
T Consensus       224 -------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~~g  265 (376)
T 2aja_A          224 -------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDG  265 (376)
T ss_dssp             -------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSSSS
T ss_pred             -------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHHCC
Confidence                   388999999999999999999999988876542    444454444

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=6e-29  Score=176.00  Aligned_cols=164  Identities=20%  Similarity=0.237  Sum_probs=140.0

Q ss_pred             hhccCCcHHHHHHHHHcCCCCCC-----------CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHH
Q psy8421           4 AYKGAGHLSVIKTLVHAGADVNH-----------STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA   72 (237)
Q Consensus         4 ~a~~~g~~~~~~~L~~~~~~~~~-----------~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~   72 (237)
                      .|++.|..+++++|++.+.....           .+..|.||||+|+..|+.+++++|++ |.+++..+..|.||||+|+
T Consensus         6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHH
T ss_pred             HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHH
Confidence            34556666677777754322211           13468899999999999999999999 9999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHcCCCCccCC-CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHH
Q psy8421          73 YKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK  151 (237)
Q Consensus        73 ~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  151 (237)
                      ..  |+.+++++|+++|++++..+ ..|.||||+|+..++.+++++|+++|++++.++..|.||+|+|+..  ++     
T Consensus        85 ~~--~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~-----  155 (183)
T 3deo_A           85 GL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI--LK-----  155 (183)
T ss_dssp             HH--TCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--HH-----
T ss_pred             Hc--CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh--cc-----
Confidence            77  99999999999999999888 8899999999999999999999999999999999999999999965  21     


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       152 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                                  ...+.+++++|+..|..+++++|.++
T Consensus       156 ------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          156 ------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence                        13467899999999999999999764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=1.3e-27  Score=161.25  Aligned_cols=131  Identities=28%  Similarity=0.379  Sum_probs=101.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC
Q psy8421          21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS  100 (237)
Q Consensus        21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  100 (237)
                      |+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  ++.+++++|++.|++++.++..|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH--GHLKVVELLLQHKALVNTTGYQND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCGGGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCcccCcCCCCC
Confidence            4556 5677888888888888888888888888888888888888888888855  888888888888888888888888


Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421         101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      ||+|+|+..++.+++++|+++|++++.++..|.||+++|+..  +..++++++.+.
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~--~~~~~l~~l~~~  131 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE--SMKSLLLLPEKN  131 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH--HHHHHHSCC---
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc--cHHHHHhhcccc
Confidence            888888888888888888888888887888888888887755  666666655544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=3.4e-27  Score=159.22  Aligned_cols=125  Identities=30%  Similarity=0.404  Sum_probs=67.3

Q ss_pred             ccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421          59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI  138 (237)
Q Consensus        59 ~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~  138 (237)
                      .++..|.||||+|+..  |+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIK--GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHH
Confidence            3455555555555544  55555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       139 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                      |+..  ++.+++++|+++|++++.++..|.||+++|+..+..+++++|.
T Consensus        83 A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           83 AAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHHT--TCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            5544  5555555555555555555555555555555554444444443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.2e-26  Score=171.49  Aligned_cols=142  Identities=22%  Similarity=0.281  Sum_probs=131.2

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC-CCCCCHHHHHH
Q psy8421          29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAAC  107 (237)
Q Consensus        29 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~  107 (237)
                      ..|.||||+|+..|+.+++++|++ |.+++.++..|.||||+|+..  |+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH--TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            468899999999999999999999 999999999999999999977  99999999999999999888 78999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                      ..|+.+++++|+++|++++.++..|.||+|+|+..  .                 ....+.|||++|+..|+.+++++|+
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~--~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREI--L-----------------KTTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--H-----------------TTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH--H-----------------hccCCCCHHHHHHHcChHHHHHHHH
Confidence            99999999999999999999999999999999864  1                 2256789999999999999999999


Q ss_pred             HcCCC
Q psy8421         188 EHGAD  192 (237)
Q Consensus       188 ~~g~~  192 (237)
                      +++.+
T Consensus       181 ~~~~~  185 (244)
T 3ui2_A          181 GQVFE  185 (244)
T ss_dssp             HHHEE
T ss_pred             Hhccc
Confidence            87544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=5.1e-26  Score=172.76  Aligned_cols=140  Identities=19%  Similarity=0.160  Sum_probs=124.0

Q ss_pred             CCcHHHHHHHhCCCCHHHHHHHHHcCCCCcc------CCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCCccccCCCCc
Q psy8421          64 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNH------STKTQSTPLRAACYD---GRLDIVKYLIEHGADLNITNHYNNS  134 (237)
Q Consensus        64 ~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~t  134 (237)
                      ..++|+.|+..  ++.+.++.|++.|.+++.      .+..|.||||+|+..   ++.+++++|+++|++++..+..|.|
T Consensus       151 ~~~~L~~A~~~--g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICN--RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHT--TCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred             hHHHHhhhhhc--cCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            45679999965  999999999999999887      588999999999997   8999999999999999999999999


Q ss_pred             hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      |||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++      .|.||||+|+..|+.
T Consensus       229 pLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          229 ALHYAALY--NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999988  999999999999999999999999999999999999999999999876      489999999998864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=169.56  Aligned_cols=142  Identities=20%  Similarity=0.183  Sum_probs=124.9

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccc------cCcCCCcHHHHHHHhC-CCCHHHHHHHHHcCCCCccCCCCCCCHH
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNI------TNHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPL  103 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~~~~l~~a~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~l  103 (237)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..+ .++.+++++|+++|++++..+..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            44679999999999999999999999987      6889999999999642 2789999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh
Q psy8421         104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  180 (237)
Q Consensus       104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  180 (237)
                      |+|+..|+.+++++|+++|++++.+|..|.|||++|+..  ++.+++++|+++|.+      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~--~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK--HHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999998  999999999998876      478999999988763

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=2.5e-25  Score=147.17  Aligned_cols=110  Identities=30%  Similarity=0.383  Sum_probs=90.3

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy8421          97 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY  176 (237)
Q Consensus        97 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  176 (237)
                      ..+.+|||.|+..++.+++++|++.|.+++..+..|.||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT--TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            4566788888888888888888888888888888888888888877  88888888888888888888888888888888


Q ss_pred             cCChhHHHHHHHcCCCcccccCCCCcHHHHHH
Q psy8421         177 DGRLDIVKYLIEHGADLNITNHYNNSCLMIAA  208 (237)
Q Consensus       177 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  208 (237)
                      .++.+++++|+++|++++.+|..|.||+|+|.
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            88888888888888888888888888888884

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.5e-25  Score=148.28  Aligned_cols=111  Identities=30%  Similarity=0.377  Sum_probs=81.9

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421          28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  107 (237)
Q Consensus        28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~  107 (237)
                      +..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..  ++.+++++|++.|++++.++..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT--TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            34566778888888888888887777777777777777777777754  7777777777777777777777777777777


Q ss_pred             hcCCHHHHHHHHHcCCCCccccCCCCchhHHHH
Q psy8421         108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA  140 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~  140 (237)
                      ..++.+++++|+++|++++.++..|.||+++|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            777777777777777777777777777777664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=7.4e-26  Score=164.93  Aligned_cols=136  Identities=25%  Similarity=0.298  Sum_probs=105.4

Q ss_pred             CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCchhHHH
Q psy8421          61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIA  139 (237)
Q Consensus        61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a  139 (237)
                      +..|.||||+|+..  |+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++. |++++..+..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKR--GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccc--CcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            45678889988866  888888888888888888888888899999888888999988888 888888888889999999


Q ss_pred             HHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCC
Q psy8421         140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN  200 (237)
Q Consensus       140 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  200 (237)
                      +..  ++.+++++|+++|++++.++..|.||+++|+..+..++++.|++.|+.....+..|
T Consensus       148 ~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWK--GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHH--TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHc--CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            988  88899999999999998889999999999998888999999988888887776544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=6.9e-26  Score=165.07  Aligned_cols=136  Identities=22%  Similarity=0.314  Sum_probs=114.9

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHc-CCCCccCCCCCCCHHHHH
Q psy8421          28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAA  106 (237)
Q Consensus        28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a  106 (237)
                      +..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..  |+.+++++|++. |++++..+..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG--GHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            44678999999999999999999999999999999999999999966  999999999998 999999999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCC
Q psy8421         107 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ  167 (237)
Q Consensus       107 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (237)
                      +..|+.+++++|+++|++++.++..|.||+++|+..  +..++++.+++.+......+..+
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~--~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA--ACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH--HHHHHHC----------------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch--hHHHHHHHHhccchhhhccchhh
Confidence            999999999999999999999999999999999977  99999999999998776665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.3e-24  Score=153.63  Aligned_cols=133  Identities=22%  Similarity=0.156  Sum_probs=122.3

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~   80 (237)
                      ++.|++.|+.++++.|++ |.+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..  ++.+
T Consensus        48 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~--~~~~  124 (183)
T 3deo_A           48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY--VRPE  124 (183)
T ss_dssp             HHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc--CcHH
Confidence            578999999999999999 99999999999999999999999999999999999999888 8899999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      ++++|+++|++++.++..|.||+|+|+..++.                 ..+.+++++++..  +..+++++|.++
T Consensus       125 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~--~~~~i~~~L~~~  181 (183)
T 3deo_A          125 VVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRI--GLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHH--HHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHc--CHHHHHHHHHHh
Confidence            99999999999999999999999999874432                 3567899999988  999999999764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.8e-24  Score=159.79  Aligned_cols=135  Identities=21%  Similarity=0.144  Sum_probs=124.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.|++.|+.++++.|++ |.+++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..  |+.+
T Consensus        49 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~--g~~~  125 (244)
T 3ui2_A           49 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY--VRPE  125 (244)
T ss_dssp             HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc--CCHH
Confidence            578999999999999999 99999999999999999999999999999999999999988 7899999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA  158 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~  158 (237)
                      ++++|+++|++++.++..|.||+|+|+..+.                 ...+.+|+++|+..  ++.+++++|.+++.
T Consensus       126 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~--g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          126 VVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRI--GLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHH--HHHHHHHHHHHHHE
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHc--ChHHHHHHHHHhcc
Confidence            9999999999999999999999999986322                 24678999999988  99999999998643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=8.5e-24  Score=164.08  Aligned_cols=163  Identities=23%  Similarity=0.219  Sum_probs=112.0

Q ss_pred             CCCCCcHHHHHHHc-CChhHHHHHHHcCCCccccC--cCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHH
Q psy8421          28 TKTQSTPLRAACYD-GRLDIVKYLIEHGADLNITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR  104 (237)
Q Consensus        28 ~~~~~t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~  104 (237)
                      ...+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..  ++.+++++|+++|++++..+..|.||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~--g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA--NSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC--CCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            44567899999999 99999999999999998887  7889999999965  8999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC---CCCCCCCCCCCHHHHHHHcCC--
Q psy8421         105 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA---DVNHSTKTQSTPLRAACYDGR--  179 (237)
Q Consensus       105 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~t~l~~a~~~~~--  179 (237)
                      +|+..++.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+..+.   +....+..+.|+++++.....  
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~--g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~  351 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET--ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMA  351 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHC--------------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999987  89999999987653   333455667788877765542  


Q ss_pred             hhHHHHHHHcCCCcc
Q psy8421         180 LDIVKYLIEHGADLN  194 (237)
Q Consensus       180 ~~~~~~Ll~~g~~~~  194 (237)
                      .+-.+.|...+.+++
T Consensus       352 ~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          352 SDDPEKLSRRSHDLH  366 (368)
T ss_dssp             ---------------
T ss_pred             CCCHHHHHhcCCCcC
Confidence            334455655555543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=8.6e-24  Score=164.07  Aligned_cols=148  Identities=24%  Similarity=0.262  Sum_probs=118.9

Q ss_pred             cCCCcHHHHHHHhCC-CCHHHHHHHHHcCCCCccCC--CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421          62 HYNNSCLMIAAYKGA-GHLSVIKTLVHAGADVNHST--KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI  138 (237)
Q Consensus        62 ~~~~~~l~~a~~~~~-~~~~~~~~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~  138 (237)
                      ..+.|+||.|+  .. ++.++++.|++.|++++..+  ..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus       197 ~~~~t~L~~Aa--~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRAS--GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHT--SSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHH--HccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            34568999999  77 99999999999999999888  889999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC---CCcccccCCCCcHHHHHHHhCcc
Q psy8421         139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       139 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      |+..  ++.+++++|+++|++++.+|..|.||||+|+..++.+++++|+..+   .+....+..+.|+++++......
T Consensus       275 A~~~--g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~  350 (368)
T 3jue_A          275 ATIL--GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLM  350 (368)
T ss_dssp             HHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred             HHHc--CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhh
Confidence            9998  9999999999999999999999999999999999999999999875   44455667788999988876543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.9e-22  Score=151.45  Aligned_cols=172  Identities=15%  Similarity=0.120  Sum_probs=112.9

Q ss_pred             HHHcCCCCCC-----CCCCCCcHHHHHHHcCChhHHHHHHHcCCCcc-----c--------------------------c
Q psy8421          17 LVHAGADVNH-----STKTQSTPLRAACYDGRLDIVKYLIEHGADLN-----I--------------------------T   60 (237)
Q Consensus        17 L~~~~~~~~~-----~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~-----~--------------------------~   60 (237)
                      -.+.|..+..     .|.++.++++.+...|+..+.+++...-....     .                          .
T Consensus        47 hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~  126 (278)
T 1dcq_A           47 HRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHAD  126 (278)
T ss_dssp             HHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSS
T ss_pred             HhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccc
Confidence            3344555543     56778888888888888666655542211110     0                          0


Q ss_pred             CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCC------ccCCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCCccccCC
Q psy8421          61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV------NHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADLNITNHY  131 (237)
Q Consensus        61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~------~~~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~  131 (237)
                      .....++|+.|+..  ++.+.+..++..|.++      +..+..|.||||+|+..   ++.+++++|+++|++++..|..
T Consensus       127 ~~~~l~~l~~a~~~--~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~  204 (278)
T 1dcq_A          127 TAAKLHSLCEAVKT--RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK  204 (278)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred             cchhhhhhhhHhhh--cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence            01123566777743  6777777777777663      33356677777777776   6777777777777777777777


Q ss_pred             CCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       132 ~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      |.||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       205 g~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          205 GSTALHYCCLT--DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHc--CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777777766  777777777777777777777777777777777777777777777654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=4.8e-23  Score=129.35  Aligned_cols=93  Identities=45%  Similarity=0.683  Sum_probs=82.6

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421          30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD  109 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~  109 (237)
                      +|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  ++.+++++|++.|++++.++..|.||+|+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            478999999999999999999999999999999999999999965  899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCC
Q psy8421         110 GRLDIVKYLIEHGAD  124 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~  124 (237)
                      ++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999988763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=4.7e-23  Score=154.77  Aligned_cols=130  Identities=21%  Similarity=0.220  Sum_probs=101.3

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHcCCCcc------ccCcCCCcHHHHHHHhCC-CCHHHHHHHHHcCCCCccCCCCCC
Q psy8421          28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLN------ITNHYNNSCLMIAAYKGA-GHLSVIKTLVHAGADVNHSTKTQS  100 (237)
Q Consensus        28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~~~l~~a~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~  100 (237)
                      +....++|+.|+..|+.+.++.+++.|.+++      ..+..|.||||+|+..+. ++.+++++|+++|++++.++..|.
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~  206 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence            3344567888888888888888888877743      346778888888885422 678888888888888888888888


Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421         101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      ||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  ++.+++++|+++|.+
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL--KHEHCEELLTQALSG  263 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc--CCHHHHHHHHHcCCC
Confidence            888888888888888888888888888888888888888877  788888888887764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=2.1e-23  Score=136.20  Aligned_cols=109  Identities=36%  Similarity=0.477  Sum_probs=97.7

Q ss_pred             cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q psy8421          94 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA  173 (237)
Q Consensus        94 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  173 (237)
                      .++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..  ++.+++++|+++|++++.++..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT--TCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            3567888999999999999999999999999988899999999999977  89999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHcCCCcccccCCCCcHH
Q psy8421         174 ACYDGRLDIVKYLIEHGADLNITNHYNNSCL  204 (237)
Q Consensus       174 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  204 (237)
                      |+..++.+++++|+++|++++.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999999885

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.1e-22  Score=127.61  Aligned_cols=92  Identities=46%  Similarity=0.688  Sum_probs=76.0

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy8421          99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG  178 (237)
Q Consensus        99 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  178 (237)
                      |.||||+|+..++.+++++|++.|++++.++..|.||||+|+..  ++.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            67788888888888888888888888888888888888888877  8888888888888888888888888888888888


Q ss_pred             ChhHHHHHHHcCCC
Q psy8421         179 RLDIVKYLIEHGAD  192 (237)
Q Consensus       179 ~~~~~~~Ll~~g~~  192 (237)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            88888888888764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=5.4e-23  Score=134.30  Aligned_cols=109  Identities=36%  Similarity=0.474  Sum_probs=92.0

Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421          26 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA  105 (237)
Q Consensus        26 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~  105 (237)
                      ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.  .++.+++++|++.|++++.++..|.||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~--~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK--NGHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHT--TTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH--cCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            467788899999999999999999998888888888888999999984  488899999998888888888888889999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccCCCCchh
Q psy8421         106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCL  136 (237)
Q Consensus       106 a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l  136 (237)
                      |+..++.+++++|+++|++++..+..+.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            8888888888888888888888877777663

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=1.3e-19  Score=117.20  Aligned_cols=92  Identities=32%  Similarity=0.432  Sum_probs=79.0

Q ss_pred             CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHH
Q psy8421          25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR  104 (237)
Q Consensus        25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~  104 (237)
                      ...+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..  ++.+++++|+++|++++.++..|.||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            44567788999999999999999999999999998888999999999965  8999999999999999888888999999


Q ss_pred             HHHhcCCHHHHHHH
Q psy8421         105 AACYDGRLDIVKYL  118 (237)
Q Consensus       105 ~a~~~~~~~~~~~L  118 (237)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999888876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=6.3e-19  Score=113.89  Aligned_cols=89  Identities=31%  Similarity=0.426  Sum_probs=51.4

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy8421          96 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  175 (237)
Q Consensus        96 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  175 (237)
                      +..|.++||+|+..++.+++++|++.|++++..+..|.||||+|+..  ++.+++++|+++|++++.++..|.||||+|+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            34455555555555555555555555555555555555566655555  5555566655555555555555666666666


Q ss_pred             HcCChhHHHHH
Q psy8421         176 YDGRLDIVKYL  186 (237)
Q Consensus       176 ~~~~~~~~~~L  186 (237)
                      ..|+.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            66665555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-38
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-32
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-28
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-23
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-28
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-22
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-22
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-20
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-15
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-12
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-12
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	8e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 2e-38
 Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +A++ G  HL ++K L+  GA  N S     TPL  A   G  ++ KYL+++ A +N  
Sbjct: 5   HVASFMG--HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
              + + L  AA    GH +++K L+   A+ N +T    TPL  A  +G ++ V  L+E
Sbjct: 63  AKDDQTPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
             A          + L +AA    G + V + L+   A  N + K   TPL  A +   L
Sbjct: 121 KEASQACMTKKGFTPLHVAAKY--GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           DIVK L+  G   +       + L IAA + 
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 209

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 2e-35
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
           TPL  A + G L IVK L++ GA  N++N    + L +AA    GH  V K L+   A V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTEVAKYLLQNKAKV 59

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           N   K   TPL  A   G  ++VK L+E+ A+ N+     ++ L IAA +G      +  
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE--TVLA 117

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           L+   A     TK   TPL  A   G++ + + L+E  A  N       + L +A +  
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 176

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-32
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +A +    +L ++K L+  G   +       TPL  A    ++++ + L+++G   N  
Sbjct: 170 HVAVHHN--NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
           +    + L +AA +G  H  ++  L+   A+ N   K+  TPL     +G + +   LI+
Sbjct: 228 SVQGVTPLHLAAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
           HG  ++ T     + L +      G++ ++K L+   ADVN  TK   +PL  A   G  
Sbjct: 286 HGVMVDATTRMGYTPLHV--ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
           DIV  L+++GA  N  +    + L IA   G
Sbjct: 344 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 374

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 6e-25
 Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 7/194 (3%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
             + V ++L+  G   N  +    TPL  A  +G  ++V  L+   A+ N+ N    + L
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 268

Query: 69  MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
            + A +G  H+ V   L+  G  V+ +T+   TPL  A + G + +VK+L++H AD+N  
Sbjct: 269 HLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL-- 186
                S L  AA +G  H  ++  L+  GA  N  +   +TPL  A   G + +   L  
Sbjct: 327 TKLGYSPLHQAAQQG--HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 384

Query: 187 -IEHGADLNITNHY 199
             +  + + +++ +
Sbjct: 385 VTDETSFVLVSDKH 398

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 3e-22
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
            +AA +G  H  ++  L+   A+ N   K+  TPL     +G + +   LI+HG  ++ T
Sbjct: 236 HLAAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 293

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
                + L +      G++ ++K L+   ADVN  TK   +PL  A   G  DIV  L++
Sbjct: 294 TRMGYTPLHV--ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
           +GA  N  +    + L IA     G++SV   L
Sbjct: 352 NGASPNEVSSDGTTPLAIAKRL--GYISVTDVL 382

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  108 bits (270), Expect = 1e-28
 Identities = 31/234 (13%), Positives = 59/234 (25%), Gaps = 23/234 (9%)

Query: 1   MIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
            +AA  G +  L  +  L+ +   V           R A  +G L ++  L E      +
Sbjct: 95  FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ---STPLRAACYDGRLDIVK 116
                 +          GHL V+  L         +            AA   G  +++ 
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 117 YLIEHGADLNITNHY-----NNSCLMIAAYKGAGHLSVIKTLVHAGA---------DVNH 162
           +L++    L     +             A        +      +               
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNI-----TNHYNNSCLMIAAYKG 211
                   L     +  LD +++L+       +          N  L +A   G
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 328

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 94.6 bits (234), Expect = 1e-23
 Identities = 30/216 (13%), Positives = 54/216 (25%), Gaps = 19/216 (8%)

Query: 2   IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY---LIEHGADLN 58
           +       +    +      +D +            A   G    +     L+     + 
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 59  ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--STPLRAACYDGRLDIVK 116
           +    N     +AA    GHL V+  L         +          R A  +G L ++ 
Sbjct: 121 VIQAENYQAFRLAAEN--GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 117 YLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
            L E             N      A  G GH +VI  L+     +               
Sbjct: 179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEF 231

Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
             G   +  ++  H   L       +    ++   G
Sbjct: 232 EYGEKYVNPFIARHVNRLK----EMHDAFKLSNPDG 263

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.2 bits (207), Expect = 1e-19
 Identities = 35/227 (15%), Positives = 56/227 (24%), Gaps = 42/227 (18%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--STPLRAACYDGRLDIVKYLIEHGADLN 58
            +AA  G  HL V+  L         +          R A  +G L ++  L E      
Sbjct: 131 RLAAENG--HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

Query: 59  ITN-HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 117
                  N      A  G GH +VI  L+     +                 G   +  +
Sbjct: 189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPF 241

Query: 118 LIEHGA-----------------------DLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
           +  H                            +   Y    L+    +    L  I+ L+
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV--LLDDIRFLL 299

Query: 155 HAGAD-----VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
                             +  LR A   G       L+   + L +T
Sbjct: 300 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT 346

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.6 bits (177), Expect = 1e-15
 Identities = 26/188 (13%), Positives = 51/188 (27%), Gaps = 26/188 (13%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
           N         LR   +    ++ ++ I    +L++        + I          V + 
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFIS-ANELSLMTLSYKEAIHIFLPGTKNMEQVRQL 64

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG- 143
           L    A  N                      +   +  +D +     +     +AA  G 
Sbjct: 65  LCLYYAHYN----------------------RNAKQLWSDAHKKGIKSEVICFVAAITGC 102

Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--HYNN 201
           +  L  +  L+ +   V           R A  +G L ++  L E      +      N 
Sbjct: 103 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 162

Query: 202 SCLMIAAY 209
               +AA 
Sbjct: 163 HAFRLAAE 170

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 4e-28
 Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 5/215 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
           M+     +G L  +K  + A  +    + +   T L  AC  G  +IV++L++ G  +N 
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
            +    S L IAA  G     ++K L+  GA VN   +   TPL  A    R +I   L+
Sbjct: 66  KDDAGWSPLHIAASAGRDE--IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
           E GA+ +  +HY  + +  AA K  G+L +I  L++  A  N      +TPL  AC + R
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAK--GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
           ++  K L+  GA + I N    + L +A      +
Sbjct: 182 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 216

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 1e-14
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 32/142 (22%)

Query: 10  HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
              ++K L+  GA VN   +   TPL  A    R +I   L+E GA+ +  +HY  + + 
Sbjct: 82  RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH 141

Query: 70  IAAYKGA-------------------------------GHLSVIKTLVHAGADVNHSTKT 98
            AA KG                                  +   K LV  GA +    K 
Sbjct: 142 RAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE 201

Query: 99  QSTPLRAACYDGRLDIVKYLIE 120
           + TPL+ A   G   I+K ++E
Sbjct: 202 EKTPLQVAKG-GLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 5e-26
 Identities = 56/257 (21%), Positives = 97/257 (37%), Gaps = 48/257 (18%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLI-------- 51
           + A       + +++ L+  GA+VN    +   TPL  A    R DIV+ L+        
Sbjct: 10  IKAVQNE--DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 52  -------------------------EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86
                                      GAD+N  + Y  +  M AA  G           
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 87  HAGAD--------VNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLM 137
            A  +             K  +T L  A   G ++++K L++  GAD+N  ++   + L+
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 138 IA--AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLN 194
            A  +   +   ++   L+  GADVN   +   TPL  A     L +V+ L+E    ++N
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247

Query: 195 ITNHYNNSCLMIAAYKG 211
            T+    + L++A    
Sbjct: 248 DTDSDGKTALLLAVELK 264

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 2e-24
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 20/205 (9%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN--- 65
           G + ++K  +  GADVN       T    A   G++  +K+L + GA++N+         
Sbjct: 83  GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142

Query: 66  -------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTK----TQSTPLRAACYDGRLD 113
                  + LM AA KG  H+ V+K L+   GADVN             L ++       
Sbjct: 143 RLRKGGATALMDAAEKG--HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLR 172
           I   L++HGAD+N+      + L++A  K   HL +++ L+     ++N +     T L 
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKK--HLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 173 AACYDGRLDIVKYLIEHGADLNITN 197
            A       I + L + GA  +  +
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 3e-21
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 1   MIAAYKGAGHLSVIKTLV-HAGADVNHSTK----TQSTPLRAACYDGRLDIVKYLIEHGA 55
           M AA KG  H+ V+K L+   GADVN             L ++       I   L++HGA
Sbjct: 153 MDAAEKG--HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 56  DLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDI 114
           D+N+      + L++A  K   HL +++ L+     ++N +     T L  A       I
Sbjct: 211 DVNVRGERGKTPLILAVEKK--HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 115 VKYLIEHGADLNITN 129
            + L + GA  +  +
Sbjct: 269 AELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 2e-18
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
             L  A  +  +D+V+ L+E GA++N        + L  A         +++ L+  GAD
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM--SREDIVELLLRHGAD 64

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
                K  +TP   A   G + ++K  +  GAD+N  + Y  +  M AA  G        
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 152 TLVHAGAD--------VNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNS 202
               A  +             K  +T L  A   G ++++K L++  GAD+N  ++   +
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 203 CLM 205
            L+
Sbjct: 185 ALI 187

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKG 211
             L  A  +  +D+V+ L+E GA++N        + L  A    
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS 50

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.1 bits (235), Expect = 6e-24
 Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 17/213 (7%)

Query: 13  VIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
           V     +   ++N    +  +TPL        L++VK+L++HG++    ++   SCL+ A
Sbjct: 88  VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 72  AYKGAGH--LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR-----------LDIVKYL 118
                 +   +    L +    +        T L                   LDI+   
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 207

Query: 119 IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH---AGADVNHSTKTQSTPLRAAC 175
           I    +  I +  N          G    S+++ L         +N       T L  A 
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
             G + IV  L+++GAD  I N      +   A
Sbjct: 268 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 30/191 (15%), Positives = 49/191 (25%), Gaps = 53/191 (27%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY-------------------- 40
                    +L ++K LV  G++  +      + L  A                      
Sbjct: 112 HWLTSIA--NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 41  ----------------------------DGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
                                          LDI+   I    +  I +  N        
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 73  YKGAGHLSVIKTLVH---AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
             G    S+++ L         +N       T L  A   G + IV  L+++GAD  I N
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

Query: 130 HYNNSCLMIAA 140
                 +   A
Sbjct: 290 KSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 79  LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
           L ++K L     + N         L+   +    ++   L    ++ N     +N     
Sbjct: 19  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 78

Query: 139 AAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
            ++       V     +   ++N    +  +TPL        L++VK+L++HG++    +
Sbjct: 79  VSFDSLLQ-EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 137

Query: 198 HYNNSCLMIAAYK 210
           +   SCL+ A   
Sbjct: 138 NMGESCLVKAVKS 150

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 90.9 bits (224), Expect = 2e-22
 Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 33/240 (13%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + A   G      +  L+  GAD+N++     T L  AC D  +D+VK+L+E+GA++N  
Sbjct: 45  LAACSSG--DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA---------------------------DVN 93
           ++     L  AA  G     + + L+  GA                           +VN
Sbjct: 103 DNEGWIPLHAAASCGYLD--IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 94  HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
                     +        D  ++L     +         + L +AA KG  +  V+K L
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG--YTEVLKLL 218

Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
           + A  DVN       TPL AA + G+ +  + L+E+  D+   N    +   +A    + 
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 77.8 bits (190), Expect = 1e-17
 Identities = 53/205 (25%), Positives = 80/205 (39%), Gaps = 27/205 (13%)

Query: 32  STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
                AAC  G  + V  L+E GAD+N  N    + L  A      ++ ++K LV  GA+
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID--DNVDMVKFLVENGAN 98

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA------- 144
           +N        PL AA   G LDI +YLI  GA +   N   ++ L IA  +         
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 145 ------------------GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
                                   + L     +     K+  T L  A   G  +++K L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
           I+   D+NI ++   + L  AA+ G
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWG 243

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 77.1 bits (188), Expect = 2e-17
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
           N          +        D  ++L     +         + L +AA KG  +  V+K 
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG--YTEVLKL 217

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
           L+ A  DVN       TPL AA + G+ +  + L+E+  D+   N    +   +A     
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 145 GHLSVIK 151
           G+L  ++
Sbjct: 278 GYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 71.7 bits (174), Expect = 2e-15
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
           G+  V+K L+ A  DVN       TPL AA + G+ +  + L+E+  D+   N    +  
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

Query: 69  MIAAYKGAGHLSVIK 83
            +A     G+L  ++
Sbjct: 270 DVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.0 bits (167), Expect = 2e-14
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 10  HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
                + L     +     K+  T L  A   G  +++K LI+   D+NI ++   + L 
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH 237

Query: 70  IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
            AA+ G       + LV    D+    K   T    A  D    I+ YL E     N+ +
Sbjct: 238 AAAHWG--KEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA+ G       + LV    D+    K   T    A  D    I+ YL E     N+ 
Sbjct: 237 HAAAHWG--KEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYLEELQKKQNLL 290

Query: 61  N 61
           +
Sbjct: 291 H 291

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 88.3 bits (217), Expect = 4e-22
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 4/200 (2%)

Query: 13  VIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
           VI  L+  GA++N +  KT  T L  A    R D  K L++ GAD N  ++   + L  A
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 72  AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
               A  +  I    +   ++N      +TPL  A       +V+ LI   AD+N  ++ 
Sbjct: 64  VAADAMGVFQILL-RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
             + L  AA         +  L+   A+ +       TPL  A  +G  +  K L+++ A
Sbjct: 123 GKTALHWAAAVNNTE--AVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA 180

Query: 192 DLNITNHYNNSCLMIAAYKG 211
           +  IT+H +     +A+ + 
Sbjct: 181 NREITDHMDRLPRDVASERL 200

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.9 bits (151), Expect = 1e-12
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
           N      +TPL  A       +V+ LI   AD+N  ++   + L  AA         +  
Sbjct: 84  NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE--AVNI 141

Query: 85  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
           L+   A+ +       TPL  A  +G  +  K L+++ A+  IT+H +     +A+ +  
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER-- 199

Query: 145 GHLSVIKTL 153
            H  +++ L
Sbjct: 200 LHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (124), Expect = 5e-09
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 9   GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
            +   +  L+   A+ +       TPL  A  +G  +  K L+++ A+  IT+H +    
Sbjct: 134 NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPR 193

Query: 69  MIAAYKGAGHLSVIKTL 85
            +A+ +   H  +++ L
Sbjct: 194 DVASER--LHHDIVRLL 208

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.2 bits (204), Expect = 6e-20
 Identities = 33/236 (13%), Positives = 59/236 (25%), Gaps = 51/236 (21%)

Query: 25  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---LNITNHYNNSCLMIAAYKGAGHLSV 81
            + T+   T L  A        + +L+   A    L++ N    + L +AA  G    S 
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--EAST 60

Query: 82  IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT------------N 129
           ++ L  AGA V  + +   T L  AC          L++                     
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN---------------------------- 161
              +        +                 +                             
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 162 ------HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
                        TPL  A       +++ L++ GAD     +   + L  A  + 
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (189), Expect = 1e-17
 Identities = 35/243 (14%), Positives = 62/243 (25%), Gaps = 53/243 (21%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGAD---VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 57
            +A      H   +  L+   A    ++       T L  A   G    V+ L   GA +
Sbjct: 14  HLAVIHQ--HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 58  NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP--------------L 103
            +     ++ L +A        +    L+                               
Sbjct: 72  LVAERGGHTALHLACRVR--AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG-------------------- 143
             +  +   +      +    L   N+  ++ L +A                        
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 144 ------------AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
                       A   SV++ L+ AGAD         TPL +A       + + L  HGA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 192 DLN 194
              
Sbjct: 250 PEP 252

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 1e-18
 Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 9/218 (4%)

Query: 1   MIAAYKGAGHLSVIKTLV----HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 56
            IA  +G  +L  +  LV      G +++     + TPL  A       +V+ L+  GA 
Sbjct: 8   HIAVVQG--NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 57  LNITNHYNNSCLMIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI 114
               + +  +   +A          +++ +      D+        T L  A      + 
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 115 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 174
           V+ L+E GAD++  +  +    +I A +     S+++ L+  GA+VN    + S+ L +A
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSGSSALHSA 184

Query: 175 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212
              G L +V+ L+  GAD ++ N +N++ LM+A  + +
Sbjct: 185 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 4e-10
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 17  LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 76
           L           K+  +PL  A  +  L +V+ L++HGA++N   +  +S L  A+ +G 
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG- 188

Query: 77  GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
             L +++TLV +GAD +       TPL  A     +DI++
Sbjct: 189 -LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 48
             A+ +G   L +++TLV +GAD +       TPL  A     +DI++
Sbjct: 182 HSASGRG--LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 77.5 bits (189), Expect = 1e-17
 Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 57/258 (22%)

Query: 8   AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH--------GADLNI 59
           AG  ++ + +     ++    +   T L     +   +  + LI H        GAD+N 
Sbjct: 11  AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 69

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
            +   N+ LM+A         ++  L+ AGAD     K++ + L  A  +    ++ Y++
Sbjct: 70  MDCDENTPLMLAVLAR--RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 120 EHGADLNITNHYNNS---CLMIAAYKGAGHL----------------------------- 147
                       + +    LMI A+                                   
Sbjct: 128 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 187

Query: 148 --------------SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193
                          V   +   G++ +   +   TP+  A  +GR+++V YLI+ GA +
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 194 NITNHYNNSCLMIAAYKG 211
              +  +++   +A    
Sbjct: 248 EAVDATDHTARQLAQANN 265

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 3e-12
 Identities = 42/242 (17%), Positives = 71/242 (29%), Gaps = 58/242 (23%)

Query: 1   MIAAYKGAGHLSVIKTLVH--------AGADVNHSTKTQSTPLRAACY------------ 40
              A          + L+         AGADVN     ++TPL  A              
Sbjct: 38  HWIASNS--SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 95

Query: 41  ---------------------DGRLDIVKYLIEHGADLNITNHYNNS---CLMIAAYKGA 76
                                +    ++ Y++            + +    LMI A+   
Sbjct: 96  AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG 155

Query: 77  GHLSVIKTL---------VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLN 126
                   L             A  +       T L  A     + IVKYL+   G++ +
Sbjct: 156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 215

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
             +    + +M+AA +G   + V+  L+  GA V     T  T  + A  +   +IV   
Sbjct: 216 KQDEDGKTPIMLAAQEG--RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

Query: 187 IE 188
             
Sbjct: 274 DR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.3 bits (108), Expect = 9e-07
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 58/234 (24%)

Query: 33  TPLR-AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH---- 87
           +P++      G   I + +     ++    H N + L   A          + L+     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASN--SSAEKSEDLIVHEAK 58

Query: 88  ----AGADVNHSTKTQSTPLRAACY---------------------------------DG 110
               AGADVN     ++TPL  A                                   + 
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 111 RLDIVKYLIEHGA---DLNITNHYNNSCLMIAAYKGAGHLSVIKTL---------VHAGA 158
              ++ Y++       D+   +    + LMI A+           L             A
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKG 211
             +       T L  A     + IVKYL+   G++ +  +    + +M+AA +G
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 232

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.6 bits (163), Expect = 7e-15
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L  A   G+ D V+ L+ +GA         +   + A Y       V+          
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV---SR 60

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           +  TK   TPL  A  +G  +IV+ L++HGAD+N  +    + L  A      H  V++ 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVEL 118

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
           L+  GADV+  +K   T    +  +G  D+ + L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (132), Expect = 2e-10
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 30/141 (21%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS------------ 148
             L  A   G+ D V+ L+ +GA         +   + A Y                   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 149 ------------------VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190
                             +++ L+  GADVN     + T L  A      ++V+ LI++G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 191 ADLNITNHYNNSCLMIAAYKG 211
           AD++  + +  +   I+   G
Sbjct: 124 ADVHTQSKFCKTAFDISIDNG 144

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 1e-09
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 7/153 (4%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           + AA  G      ++ L+  GA         S    AA Y         L    +    T
Sbjct: 7   LEAARAG--QDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
                   M A+     H ++++ L+  GADVN     + T L  A      ++V+ LI+
Sbjct: 65  KVDRTPLHMAASEG---HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
           +GAD++  + +  +   I+     G+  + + L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDN--GNEDLAEIL 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (157), Expect = 2e-13
 Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 8/217 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
             A  +       ++ L+H+  + +    +    PL  +      +I  +L+    ++N+
Sbjct: 5   HQACMEN--EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 60  TNHYNNSCLMIAAYKGAGHLSVIKTLVHA---GADVNHSTKTQSTPLRAACYDGRLDIVK 116
            ++ ++S         +     +   ++      D+N  T    T L  A      ++ +
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 117 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 176
           +LIE+GA + I + +N   L  AA  G+  L  +       + VN   K   TPL  A  
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC-GLGKSAVNWQDKQGWTPLFHALA 181

Query: 177 DGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGI 212
           +G  D    L+E +GA+ ++ ++       +A  + +
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 218

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 8e-06
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 169 TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKG 211
            PL  AC +     V+ L+    + L   +      L  +    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 10  HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCL 68
              V + L+  GA V    K    PL  A   G L +++ L   G   +N  +    + L
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 176

Query: 69  MIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 124
             A  +G  H      LV   GA+ +      +     A       + K+ + +  D
Sbjct: 177 FHALAEG--HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 3e-12
 Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 7/186 (3%)

Query: 33  TPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 88
           + L  A         +++++ +    A LN  N+   + L +A       ++        
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 89  GADVNHSTKTQSTPLRAACYDGRLDIV---KYLIEHGADLNITNHYNNSCLMIAAYKGAG 145
             ++          L           V        H   +    +YN    +  A     
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 146 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
              V   +               T L  A      D+V  L++ GAD+N   +   S   
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 183

Query: 206 IAAYKG 211
           +   + 
Sbjct: 184 LTWGRP 189

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 5e-12
 Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 9/199 (4%)

Query: 1   MIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 58
            +A      A  + VI+ +    A +N     Q TPL  A    + +I + L+  G D  
Sbjct: 7   HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE 66

Query: 59  ITNHYNNSCLMIAAYKGAGHLSVIK----TLVHAGADVNHSTKTQSTPLRAACYDGRLDI 114
           + +   N+ L +A  +G      +     T  H  + +  +     T L  A   G L I
Sbjct: 67  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 126

Query: 115 VKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
           V+ L+  GAD+N     N  + L +A      +  ++  L+  GADVN  T    +P + 
Sbjct: 127 VELLVSLGADVNAQEPCNGRTALHLAVDLQ--NPDLVSLLLKCGADVNRVTYQGYSPYQL 184

Query: 174 ACYDGRLDIVKYLIEHGAD 192
                   I + L +   +
Sbjct: 185 TWGRPSTRIQQQLGQLTLE 203

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 5e-12
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L +A   G L+ +  L+++  ++N  N +  + L +           +        + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA---NP 59

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
           +   +T    +  A   G LD ++ L+E  AD+NI ++  N  L +AA +G     V   
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR-VVEFL 118

Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190
           + H  ++V H      T    A   GR ++V  +  +G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-05
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
             L +A   G L+ +  L+++  ++N  N +  + L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 18/157 (11%), Positives = 39/157 (24%), Gaps = 6/157 (3%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
             AA +G   L  + +L+    +VN       T L+           + L+         
Sbjct: 6   ASAAARG--DLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKD 63

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
                     A       L  +          ++                   +   +  
Sbjct: 64  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA--KEGHLRVVEFLVKH 121

Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
             +++   NH  ++   +A     G   V+  +   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLY--GRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 14/142 (9%), Positives = 35/142 (24%), Gaps = 31/142 (21%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG--- 157
             L +A   G L+ +  L+++  ++N  N +  + L +           +          
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 158 ----------------------------ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
                                              +       AA       +   +   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 190 GADLNITNHYNNSCLMIAAYKG 211
            +++   NH  ++   +A   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYG 144

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 8e-12
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 33  TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
             L  A   G +  V+ L+       +  N +  + L +  +        +         
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA---S 60

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
            N    + ++P+  A   G LD +K L+EHGAD+N+ +      + +A  +     + + 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE---GHTAVV 117

Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
           + + A +D++       TPL  A   G  D+V  L  H
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 19  HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 53
            A +D++       TPL  A   G  D+V  L  H
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 7/145 (4%)

Query: 68  LMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
           L  AA +G   +  ++ L+H      +   +   T L+   +      ++ L +  +   
Sbjct: 6   LSGAAARG--DVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
                 +     A       L  +K LV  GADVN    T + P+  A  +G   +V +L
Sbjct: 64  QDTSGTSPVHDAARTG---FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
               +DL+  +    + L +A  +G
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRG 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 9/139 (6%)

Query: 28  TKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT------NHYNNSCLMIAAYKGA-GHLS 80
           T  +   L  A     +  +      G DL         +  + + L +A        L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 81  VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
           ++  LV    +++  T   ST L   C     + +K L+   A + I N    + L IA 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 141 YKGAGHLSVIKTLVHAGAD 159
                H    + L  A + 
Sbjct: 123 RL--KHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 12/135 (8%)

Query: 76  AGHLSVIKTLVHAGADVNHSTKTQS------TPLRAACY---DGRLDIVKYLIEHGADLN 126
              +  +      G D+       +      T L  A        L IV +L+++  +L+
Sbjct: 16  TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 75

Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
                 ++ L             +K L+   A +  + ++  TPL  A         + L
Sbjct: 76  KQTGKGSTALHYCCLTDNAE--CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 133

Query: 187 IEHGAD-LNITNHYN 200
            +  +   N   H  
Sbjct: 134 TQALSGRFNSHVHVE 148

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 96  TKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT------NHYNNSCLMIAAYKGA-GHLS 148
           T  +   L  A     +  +      G DL         +  + + L +A        L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
           ++  LV    +++  T   ST L   C     + +K L+   A + I N    + L IA 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 209 YKG 211
              
Sbjct: 123 RLK 125

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 1   MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
           +         L ++  LV    +++  T   ST L   C     + +K L+   A + I 
Sbjct: 51  LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA 110

Query: 61  NHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
           N    + L IA      H    + L  A + 
Sbjct: 111 NESGETPLDIAKRL--KHEHCEELLTQALSG 139

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-11
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 3/129 (2%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
             L  +  +G  D+V+ +I    D ++ N    + L  A   G   +           + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-ITNHYNNSCLMIAAYKGAGHLSVIK 151
             S                + + K+L+E GA +  +T     +          G+    +
Sbjct: 63  ADSDGWTPLHCA--ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 152 TLVHAGADV 160
            L      +
Sbjct: 121 FLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 9e-10
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 66  SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
           + L+ ++ +G     +++ +++   D +       T L  A   G  +IVK+L++ G ++
Sbjct: 3   ALLLDSSLEG--EFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ---STPLRAACYDGRLDI 182
           N  +    + L  AA        V K LV +GA V   T +    +        +G    
Sbjct: 61  NAADSDGWTPLHCAASCNNVQ--VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 118

Query: 183 VKYLIEHGADL 193
            ++L      +
Sbjct: 119 SQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
             L  +  +G  D+V+ +I    D ++ N    + L  A   G   +           + 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN---SCLMIAAYKG 211
             S                + + K+L+E GA +    + +    +       +G
Sbjct: 63  ADSDGWTPLHCA--ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 114

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 13  VIKTLVHAGADVNHSTKTQ---STPLRAACYDGRLDIVKYLIEHGADL 57
           V K LV +GA V   T +    +        +G     ++L      +
Sbjct: 82  VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-05
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 32  STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
           +  L  A   GR++ V+ L+E GA+ N  N Y    + +     A        L+H    
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV--AELLLLHGAEP 61

Query: 92  VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
                 T + P+  A  +G LD +  L   GA L++ + +    + +A     GH  V +
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL--GHRDVAR 119

Query: 152 TLVHA 156
            L  A
Sbjct: 120 YLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 4/125 (3%)

Query: 64  NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
           +   L  AA +G   +  ++ L+ AGA+ N        P++             L+    
Sbjct: 3   SADWLATAAARG--RVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 124 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 183
                       +  AA +G      +  L  AGA ++        P+  A   G  D+ 
Sbjct: 61  PNCADPATLTRPVHDAAREGFLD--TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 184 KYLIE 188
           +YL  
Sbjct: 119 RYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (76), Expect = 0.004
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 168 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
           +  L  A   GR++ V+ L+E GA+ N  N Y    + 
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ 41

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (88), Expect = 8e-05
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 33  TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
                A  +G LD VK  +  G D+N T       L  AA  G     +++ L+  GAD+
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLE--ILEFLLLKGADI 61

Query: 93  NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
           N   K   TPL +A Y+G +  VK L+  GAD  +      + L     + 
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-43  Score=253.63  Aligned_cols=215  Identities=29%  Similarity=0.426  Sum_probs=198.2

Q ss_pred             CchhhccCCcHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           1 MIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         1 ~l~~a~~~g~~~~~~~L~~-~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      |++.+|..|+++.++.+++ .+..++..|..|+||||+|+..|+.++++++++.+......+..+.++++.++..  ++.
T Consensus         6 ~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~   83 (223)
T d1uoha_           6 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA--GRD   83 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH--TCH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc--ccc
Confidence            4677889999999988875 4567889999999999999999999999999999999888888999999999976  999


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421          80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD  159 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~  159 (237)
                      +++++|++.+.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+++..  +..+++++|.+.+.+
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~--~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK--GNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhc--CCcchhhhhccccce
Confidence            999999999999999999999999999999999999999999999999999999999999988  999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccc
Q psy8421         160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLF  222 (237)
Q Consensus       160 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  222 (237)
                      ++.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||+|+|. .|..  .+.++++
T Consensus       162 i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~--~i~~~Ll  221 (223)
T d1uoha_         162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLG--LILKRMV  221 (223)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHH--HHHHHHH
T ss_pred             eeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCH--HHHhccc
Confidence            9999999999999999999999999999999999999999999999984 4433  3444443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=253.25  Aligned_cols=212  Identities=33%  Similarity=0.418  Sum_probs=176.7

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhC------
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG------   75 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~------   75 (237)
                      |+.||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+      
T Consensus         4 L~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~   83 (408)
T d1n11a_           4 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK   83 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999998552      


Q ss_pred             ----------------------------------------------------------CCCHHHHHHHHHcCCCCccCCC
Q psy8421          76 ----------------------------------------------------------AGHLSVIKTLVHAGADVNHSTK   97 (237)
Q Consensus        76 ----------------------------------------------------------~~~~~~~~~ll~~~~~~~~~~~   97 (237)
                                                                                .++.+++++|++++.+++..+.
T Consensus        84 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~  163 (408)
T d1n11a_          84 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK  163 (408)
T ss_dssp             HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence                                                                      1345667777777888888888


Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcC----------------------------------
Q psy8421          98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG----------------------------------  143 (237)
Q Consensus        98 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~----------------------------------  143 (237)
                      .+.+|++.|+..++.+++++|+++|++++..+..|.||++.++...                                  
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            8999999999999999999999888776544443333333322110                                  


Q ss_pred             ------------------------------CCCHHHHHHH---------------------------------HhCCCCC
Q psy8421         144 ------------------------------AGHLSVIKTL---------------------------------VHAGADV  160 (237)
Q Consensus       144 ------------------------------~~~~~~~~~l---------------------------------~~~~~~~  160 (237)
                                                    .++.+++++|                                 +++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i  323 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  323 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccc
Confidence                                          0334444444                                 4455667


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      +.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.
T Consensus       324 n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            88889999999999999999999999999999999999999999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5.4e-39  Score=241.87  Aligned_cols=204  Identities=28%  Similarity=0.362  Sum_probs=188.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      +..||+.|++++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|.+....+..+.+||++++..  ++.++
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~--~~~~~  121 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC--GYLDI  121 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc--cccch
Confidence            5678899999999999999999999999999999999999999999999999999999999999999999976  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc-CC--------------------------CCccccCCCCc
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GA--------------------------DLNITNHYNNS  134 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~--------------------------~~~~~~~~~~t  134 (237)
                      ++.|++.|...+..+..+.+++++|+..+..+.++.++.. +.                          .....+..|.|
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  201 (291)
T d1s70b_         122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             hhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCC
Confidence            9999999999999999999999999988888888777653 22                          23345678899


Q ss_pred             hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHH
Q psy8421         135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY  209 (237)
Q Consensus       135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  209 (237)
                      |+|.++..  ++.++++.|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++
T Consensus       202 ~L~~a~~~--~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         202 ALHVAAAK--GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHHHH--TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             hhhHHHHc--CChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999998  99999999999999999999999999999999999999999999999999999999999999975

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-38  Score=234.19  Aligned_cols=216  Identities=18%  Similarity=0.137  Sum_probs=120.9

Q ss_pred             chhhccCCcHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGAD---VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH   78 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~---~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~   78 (237)
                      ||.|++.|+.+++++|++.|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..  ++
T Consensus        13 Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~--~~   90 (255)
T d1oy3d_          13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV--RA   90 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT--TC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhcc--Cc
Confidence            3455555555555555555544   333444555555555555555555555555555555555555555555522  55


Q ss_pred             HHHHHHHHHcCCCCccCCCC----------CCCHHHHHHhcCC----HHHHHHHHHcCCCCccccCCCCchhHHHHHcCC
Q psy8421          79 LSVIKTLVHAGADVNHSTKT----------QSTPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA  144 (237)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~----------~~~~l~~a~~~~~----~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~  144 (237)
                      .+++++|++.+.........          .......+.....    ..........+..++.++..|.||||+|+..  
T Consensus        91 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~--  168 (255)
T d1oy3d_          91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH--  168 (255)
T ss_dssp             HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT--
T ss_pred             hHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccc--
Confidence            55555554432211100000          0000000000000    0000000011233455677788888888877  


Q ss_pred             CCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         145 GHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      ++.+++++|++++.+.+. .+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+..  ++.+.|++
T Consensus       169 ~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~--~i~~~Ll~  246 (255)
T d1oy3d_         169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP--ILARLLRA  246 (255)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH--HHHHHHHH
T ss_pred             cccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH--HHHHHHHH
Confidence            888888888888877764 456788888888888888888888888888888888888888888887754  44455544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-38  Score=235.57  Aligned_cols=195  Identities=21%  Similarity=0.188  Sum_probs=147.7

Q ss_pred             CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCC---ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC
Q psy8421          25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST  101 (237)
Q Consensus        25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~  101 (237)
                      .+.+++|.||||+||..|+.+++++|+++|++   ++.++..|.||||+|+..  |+.+++++|++.|++++..+..|.+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~--g~~~iv~~Ll~~ga~i~~~d~~g~t   80 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEASTVEKLYAAGAGVLVAERGGHT   80 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhh--cccccccccccccccccccccccch
Confidence            46789999999999999999999999999887   566788999999999977  9999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCccccC----------CCCchhHHHHHcCC--CCHHHHHHHHhCCCCCCCCCCCCCC
Q psy8421         102 PLRAACYDGRLDIVKYLIEHGADLNITNH----------YNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQST  169 (237)
Q Consensus       102 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~----------~~~t~l~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~t  169 (237)
                      |+|+|+..++.+++++|++.+........          ...+..........  ............+.+++.++..|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            99999999999999999987543221100          00111111111000  1111222222345678889999999


Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCcccc-cCCCCcHHHHHHHhCccccccCccccc
Q psy8421         170 PLRAACYDGRLDIVKYLIEHGADLNIT-NHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       170 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      |||+|+..++.+++++|++++++++.. +..|.||||+|+..|..  ++.+.+++
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~--~~v~~Ll~  213 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA--SVLELLLK  213 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH--HHHHHHHH
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccHH--HHHHHHHH
Confidence            999999999999999999999998764 57899999999998853  44444443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-37  Score=222.83  Aligned_cols=205  Identities=23%  Similarity=0.292  Sum_probs=187.2

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccc---cCcCCCcHHHHHHHhCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI---TNHYNNSCLMIAAYKGAG   77 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~~l~~a~~~~~~   77 (237)
                      ||.|+..|++++++.|++. +.+++..|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+|+++++..  +
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~--~   81 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV--G   81 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH--T
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc--c
Confidence            6889999999999999875 467889999999999999999999999999999998864   567799999999976  8


Q ss_pred             CHHHHHHHHHcCCCC--ccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh
Q psy8421          78 HLSVIKTLVHAGADV--NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH  155 (237)
Q Consensus        78 ~~~~~~~ll~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~  155 (237)
                      ..++++.++..+...  ...+..+.++++.++..++.++++.|++.|...+..+..|.||+|+++..  ++.++++.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~  159 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV--GSLKLIELLCG  159 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhc--ccccccccccc
Confidence            999999999877654  44566788999999999999999999999999999999999999999998  99999999999


Q ss_pred             CC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHHH-cCCCcccccCCCCcHHHHHHHh
Q psy8421         156 AG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYK  210 (237)
Q Consensus       156 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~  210 (237)
                      .+ .+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            87 6789999999999999999999999999996 5999999999999999999853

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.6e-36  Score=226.61  Aligned_cols=201  Identities=21%  Similarity=0.352  Sum_probs=168.7

Q ss_pred             CCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHH--------HHcCCCccccCcCCCcHHHHHHHhCCCCH
Q psy8421           8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL--------IEHGADLNITNHYNNSCLMIAAYKGAGHL   79 (237)
Q Consensus         8 ~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~L--------l~~~~~~~~~~~~~~~~l~~a~~~~~~~~   79 (237)
                      .|+.++++.|.+.+++... +..|.||||+||..|+.++|++|        ++.|++++.+|..|.||||+|+..  |+.
T Consensus        11 ~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~--g~~   87 (277)
T d2fo1e1          11 AGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA--RRR   87 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH--TCH
T ss_pred             CCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccc--ccc
Confidence            5778888888887766533 23588999999999999888776        456889999999999999999976  899


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCC------------------------------------
Q psy8421          80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA------------------------------------  123 (237)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~------------------------------------  123 (237)
                      +++++|+++|++++.++..|.||++.|+..++.++...+...+.                                    
T Consensus        88 ~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (277)
T d2fo1e1          88 RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE  167 (277)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccc
Confidence            99999999999999999999999999999888777776643210                                    


Q ss_pred             -----------CCccccCCCCchhHHHHHcCCCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCC
Q psy8421         124 -----------DLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA  191 (237)
Q Consensus       124 -----------~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  191 (237)
                                 ..+..+..|.|++|+++..  ++.+++++++ ..+.+.+.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~--~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga  245 (277)
T d2fo1e1         168 KGAKVDYDGAARKDSEKYKGRTALHYAAQV--SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA  245 (277)
T ss_dssp             HTCCSSCCSGGGTSSSSCCCCCTHHHHHSS--CCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccCCCCcccccccc--ccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence                       0112344678999999977  8898888754 6788899999999999999999999999999999999


Q ss_pred             CcccccCCCCcHHHHHHHhCcc
Q psy8421         192 DLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       192 ~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      +++.+|..|+||||+|+..|+.
T Consensus       246 din~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         246 SVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999964

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=211.79  Aligned_cols=182  Identities=29%  Similarity=0.373  Sum_probs=174.6

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|+..|+.++++++++.+......+..+.++++.|+..++.+++++|+++|.+++..+..|.||||+|+..  ++.++
T Consensus        41 Lh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~--~~~e~  118 (223)
T d1uoha_          41 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK--NRHEI  118 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHc--CCHHH
Confidence            6789999999999999999999988889999999999999999999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN  161 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~  161 (237)
                      +++|+++|.+++..+..+.+|+|+|+..+..+++++|.+.+.+++..+..|.||||+|+..  ++.+++++|+++|++++
T Consensus       119 ~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~--g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         119 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE--ERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceecccccc--CcHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999988  99999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421         162 HSTKTQSTPLRAACYDGRLDIVKYLIE  188 (237)
Q Consensus       162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~  188 (237)
                      .+|.+|+||||+|. .|+.+++++|++
T Consensus       197 ~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         197 IENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            99999999999985 688899999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=7.1e-35  Score=209.04  Aligned_cols=199  Identities=26%  Similarity=0.296  Sum_probs=180.2

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcC
Q psy8421          11 LSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG   89 (237)
Q Consensus        11 ~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~   89 (237)
                      -|+|++|+++|++++. .|.+|.||||+||..|+.+++++|+++|++++.++..+.++++.++..  ++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA--DAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc--ccccccccccccc
Confidence            4899999999999986 588999999999999999999999999999999999999999999965  6776666655533


Q ss_pred             C-CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCC
Q psy8421          90 A-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS  168 (237)
Q Consensus        90 ~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  168 (237)
                      . ........+.++.+.+.........+.|.+.+.+++.++..|.||++.++..  +..++++.+++.+.+++..|..|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~--~~~~~~~~l~~~~~~~~~~d~~g~  157 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV--NNTEAVNILLMHHANRDAQDDKDE  157 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhccc--Ccceeeeeeccccccccccccccc
Confidence            2 3333455677888989999999999999999999999999999999999988  999999999999999999999999


Q ss_pred             CHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       169 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||+|+|++.|+.
T Consensus       158 TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         158 TPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999865

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=210.54  Aligned_cols=219  Identities=28%  Similarity=0.408  Sum_probs=180.7

Q ss_pred             CchhhccCCcHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChhHHHHHHHcCCCccccC------------------
Q psy8421           1 MIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITN------------------   61 (237)
Q Consensus         1 ~l~~a~~~g~~~~~~~L~~~~~~~~~~~-~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~------------------   61 (237)
                      +|+.|++.|+++++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.+......+                  
T Consensus         8 ~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (285)
T d1wdya_           8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccc
Confidence            4788999999999999999999998765 469999999999999999999998776543333                  


Q ss_pred             ---------------cCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCcc----------CCCCCCCHHHHHHhcCCHHHHH
Q psy8421          62 ---------------HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH----------STKTQSTPLRAACYDGRLDIVK  116 (237)
Q Consensus        62 ---------------~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~----------~~~~~~~~l~~a~~~~~~~~~~  116 (237)
                                     ..+.++++.|+..  ++...+..++....+++.          ....|.||||+|+..++.++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          88 LKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHTTCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cchhhhhcccccccccCCCchhHHHHHh--cchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence                           3455666666644  677777777765554432          2345889999999999999999


Q ss_pred             HHHHc-CCCCccccCCCCchhHHHHHcC--CCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc-CCC
Q psy8421         117 YLIEH-GADLNITNHYNNSCLMIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GAD  192 (237)
Q Consensus       117 ~L~~~-~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~  192 (237)
                      +|+++ |++++..+..+.++...+....  .+..+++++|+++|++++.++..|.||||.|+..|+.+++++|++. |++
T Consensus       166 ~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d  245 (285)
T d1wdya_         166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             HHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             HHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC
Confidence            99976 7899999988988887766542  2446799999999999999999999999999999999999999985 999


Q ss_pred             cccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421         193 LNITNHYNNSCLMIAAYKGIDVGRVGPGLFD  223 (237)
Q Consensus       193 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  223 (237)
                      ++.+|..|.||||+|+++|..  ++.+.|++
T Consensus       246 in~~d~~G~TpL~~A~~~~~~--eiv~~Ll~  274 (285)
T d1wdya_         246 INDTDSDGKTALLLAVELKLK--KIAELLCK  274 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCH--HHHHHHHH
T ss_pred             CcCCCCCCCCHHHHHHHcCCH--HHHHHHHH
Confidence            999999999999999999854  55555554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=214.05  Aligned_cols=180  Identities=26%  Similarity=0.291  Sum_probs=142.0

Q ss_pred             CCCcHHHHHHHcCChh----HHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421          30 TQSTPLRAACYDGRLD----IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA  105 (237)
Q Consensus        30 ~~~t~l~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~  105 (237)
                      +|.||||+|+..|+.+    +++++...+.+++.+|..|.||||+|+..  ++.+++++|++.|++++..+..|.+|++.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~--~~~~iv~~L~~~g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPEIAEALLGAGCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT--TCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccc--ccccccccccccccccccccccccccccc
Confidence            4788888888888854    44455567888888888888888888865  88888888888888888888888888888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCc------cccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcC
Q psy8421         106 ACYDGRLDIVKYLIEHGADLN------ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDG  178 (237)
Q Consensus       106 a~~~~~~~~~~~L~~~~~~~~------~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~  178 (237)
                      ++..+..++++.|++.+....      .....|.||+|.++..  ++.+++++++..|..++..+ .+|.||||+|+..|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH--GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhc--CChhheeeecccCcccccccccCCCCccccccccc
Confidence            888888888888888764432      2334577888888877  88888888888888777654 56888888888888


Q ss_pred             ChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421         179 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID  213 (237)
Q Consensus       179 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  213 (237)
                      +.+++++|+++|+|++.+|..|+||+|+|+..+..
T Consensus       157 ~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         157 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             cHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCH
Confidence            88888888888888888888888888888887643

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=198.48  Aligned_cols=207  Identities=24%  Similarity=0.350  Sum_probs=184.7

Q ss_pred             chhhccCCcHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC
Q psy8421           2 IAAYKGAGHLSVIKTLVH----AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG   77 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~----~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~   77 (237)
                      |+.||+.|+.++++.|++    .|++++..|..|.||||+|+..|+.+++++|+++|++.+..+..+.++++.|...  +
T Consensus         7 Lh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~--~   84 (228)
T d1k1aa_           7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH--R   84 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--T
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccccc--c
Confidence            688999999999998874    7899999999999999999999999999999999999999999999999999965  8


Q ss_pred             CHHHHHHHHHcCCC----CccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCc-cccCCCCchhHHHHHcCCCCHHHHHH
Q psy8421          78 HLSVIKTLVHAGAD----VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-ITNHYNNSCLMIAAYKGAGHLSVIKT  152 (237)
Q Consensus        78 ~~~~~~~ll~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~~~~  152 (237)
                      +.++++.+......    .+.......++++.+...........|.....+.. .....+.++++.++..  +...+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~  162 (228)
T d1k1aa_          85 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN--NSLSMVQL  162 (228)
T ss_dssp             CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT--TCHHHHHH
T ss_pred             cccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHh--hhhhhhhh
Confidence            88888888764332    33445567789999999999999999988765543 3456889999999988  99999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421         153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       153 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  212 (237)
                      ++++|.+.+.++..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|.
T Consensus       163 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         163 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999998774

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.7e-33  Score=208.98  Aligned_cols=184  Identities=27%  Similarity=0.344  Sum_probs=161.7

Q ss_pred             chhhccCCcHHHHHHH--------HHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421           2 IAAYKGAGHLSVIKTL--------VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY   73 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L--------~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~   73 (237)
                      ||.||..|+.+++++|        ++.|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+.
T Consensus        37 Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~  116 (277)
T d2fo1e1          37 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA  116 (277)
T ss_dssp             HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhh
Confidence            6889999999999877        56789999999999999999999999999999999999999999999999999996


Q ss_pred             hCCCCHHHHHHHHHcC-----------------------------------------------CCCccCCCCCCCHHHHH
Q psy8421          74 KGAGHLSVIKTLVHAG-----------------------------------------------ADVNHSTKTQSTPLRAA  106 (237)
Q Consensus        74 ~~~~~~~~~~~ll~~~-----------------------------------------------~~~~~~~~~~~~~l~~a  106 (237)
                      .  ++.+++..+...+                                               ...+..+..|.|++|++
T Consensus       117 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~  194 (277)
T d2fo1e1         117 N--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  194 (277)
T ss_dssp             T--TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             h--cchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccc
Confidence            5  7777666664321                                               00123345678999999


Q ss_pred             HhcCCHHHHHHHH-HcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421         107 CYDGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY  185 (237)
Q Consensus       107 ~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  185 (237)
                      +..++.+++++++ ..+.+.+..+..|.||||+|+..  ++.+++++|+++|++++.+|.+|+||||+|+..|+.+++++
T Consensus       195 ~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~--g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE--GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI  272 (277)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCCCHHHHHHHc--CCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999998755 56788888999999999999998  99999999999999999999999999999999999999999


Q ss_pred             HHHc
Q psy8421         186 LIEH  189 (237)
Q Consensus       186 Ll~~  189 (237)
                      |++.
T Consensus       273 L~~c  276 (277)
T d2fo1e1         273 FDRC  276 (277)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            9863

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=202.44  Aligned_cols=188  Identities=23%  Similarity=0.258  Sum_probs=165.5

Q ss_pred             CchhhccCCcH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCC
Q psy8421           1 MIAAYKGAGHL----SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA   76 (237)
Q Consensus         1 ~l~~a~~~g~~----~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~   76 (237)
                      .||.|+..|+.    ++++++...|.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++++..  
T Consensus         5 ~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~--   82 (221)
T d1iknd_           5 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ--   82 (221)
T ss_dssp             TTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccccc--
Confidence            36788888985    555666678899999999999999999999999999999999999999999999999999977  


Q ss_pred             CCHHHHHHHHHcCCCCc------cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHHHHcCCCCHHH
Q psy8421          77 GHLSVIKTLVHAGADVN------HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSV  149 (237)
Q Consensus        77 ~~~~~~~~ll~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~  149 (237)
                      ++.++++.++..+....      .....+.+|++.|+..++.+++++|++.|..++..+ ..|.||+|+|+..  ++.++
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~--g~~~~  160 (221)
T d1iknd_          83 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL--QNPDL  160 (221)
T ss_dssp             TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT--TCHHH
T ss_pred             ccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc--ccHHH
Confidence            89999999998765532      234457899999999999999999999998887765 5799999999988  99999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       150 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      +++|+++|++++.++.+|.||||+|+..++.+++++|++.+.+
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999999988655

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-32  Score=185.55  Aligned_cols=153  Identities=27%  Similarity=0.411  Sum_probs=144.0

Q ss_pred             cHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCH
Q psy8421          33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  112 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  112 (237)
                      +|||+||..|+.++|++|+++|++++.+|..|.||||+|+ .  ++.+++++|++.+++++..+..+.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~--~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-L--GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S--SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-c--ccccccccccccccccccccccCccccccccccccc
Confidence            7999999999999999999999999999999999999875 3  789999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421         113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  190 (237)
Q Consensus       113 ~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  190 (237)
                      +.++.+++.+.+++..+..|.+|+++|+..  ++.+++++|++++. +++.++..|.||||+|+..++.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccc--ccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999988  99999999999885 78899999999999999999999999999887

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=2.4e-31  Score=199.75  Aligned_cols=212  Identities=26%  Similarity=0.324  Sum_probs=179.6

Q ss_pred             cCCcHHHHHHHHHcCCCCCCCC---------CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC
Q psy8421           7 GAGHLSVIKTLVHAGADVNHST---------KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG   77 (237)
Q Consensus         7 ~~g~~~~~~~L~~~~~~~~~~~---------~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~   77 (237)
                      +....+.++.......+.+..-         ..+.|+|+.||..|+.++|++|+++|++++..|..|.||||+|+..  |
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~--g   84 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID--D   84 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT--T
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhc--C
Confidence            3444566666666554443221         2245899999999999999999999999999999999999999966  9


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC-
Q psy8421          78 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA-  156 (237)
Q Consensus        78 ~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~-  156 (237)
                      +.+++++|++++.+....+..+.+|++.++..++.++++.|+++|...+..+..+.+++++|+..  +..+.++.++.. 
T Consensus        85 ~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~ll~~~  162 (291)
T d1s70b_          85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE--AMEELLQNEVNRQ  162 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH--HHHHHHHHHHHHH
T ss_pred             CceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCcccccccccc--ccchhcccccccc
Confidence            99999999999999998899999999999999999999999999999998999999999999866  677776666542 


Q ss_pred             --------------------------CCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHh
Q psy8421         157 --------------------------GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK  210 (237)
Q Consensus       157 --------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  210 (237)
                                                ..+....+..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~  242 (291)
T d1s70b_         163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW  242 (291)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             ccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHc
Confidence                                      223456778899999999999999999999999999999999999999999999


Q ss_pred             CccccccCcccccc
Q psy8421         211 GIDVGRVGPGLFDR  224 (237)
Q Consensus       211 ~~~~~~~~~~~~~~  224 (237)
                      |..  ++...|++.
T Consensus       243 g~~--~iv~lLl~~  254 (291)
T d1s70b_         243 GKE--EACRILVEN  254 (291)
T ss_dssp             TCH--HHHHHHHHT
T ss_pred             CCH--HHHHHHHHC
Confidence            865  555556554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.9e-31  Score=190.05  Aligned_cols=188  Identities=23%  Similarity=0.293  Sum_probs=166.6

Q ss_pred             CcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCc---cCCCCCCCHHHHHH
Q psy8421          32 STPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN---HSTKTQSTPLRAAC  107 (237)
Q Consensus        32 ~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~---~~~~~~~~~l~~a~  107 (237)
                      ++|||+||..|+.++++.|++. +..++.+|..|.||||+|+..  |+.+++++|+++|++++   ..+..+.++++++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~--g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHc--CCccccchhhhhhccccccccccccccccccccc
Confidence            4899999999999999999864 578888999999999999966  99999999999998875   45667899999999


Q ss_pred             hcCCHHHHHHHHHcCCCC--ccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421         108 YDGRLDIVKYLIEHGADL--NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY  185 (237)
Q Consensus       108 ~~~~~~~~~~L~~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  185 (237)
                      ..+..++++.++..+...  ...+..+.++++.++..  ++.++++.|+..+.+.+.++..|+||||+|+..|+.+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  156 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK--KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL  156 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccc--chhhhhhhhhhhcccccccCCCCCCccchhhhccccccccc
Confidence            999999999999887654  34567889999999988  99999999999999999999999999999999999999999


Q ss_pred             HHHcC-CCcccccCCCCcHHHHHHHhCccccccCccccccc
Q psy8421         186 LIEHG-ADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRY  225 (237)
Q Consensus       186 Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~  225 (237)
                      |++.+ .+++.+|..|+||||+|+..|..  ++...|++++
T Consensus       157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~--~~v~~Ll~~~  195 (229)
T d1ixva_         157 LCGLGKSAVNWQDKQGWTPLFHALAEGHG--DAAVLLVEKY  195 (229)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCH--HHHHHHHHHH
T ss_pred             ccccccccccccccccCCchhhhcccccH--HHHHHHHHhc
Confidence            99986 68899999999999999999855  5555566543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=176.45  Aligned_cols=151  Identities=25%  Similarity=0.390  Sum_probs=144.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      ||.||..|+.++|+.|+++|++++..|..|.||||+|+ .|+.+++++|+++|++++..+..+.+|++.++..  +..++
T Consensus         5 Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~--~~~~~   81 (156)
T d1ihba_           5 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA--GFLDT   81 (156)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccc--ccccc
Confidence            68899999999999999999999999999999999886 7899999999999999999999999999999977  99999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCC-CCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG  157 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~  157 (237)
                      ++.+++.+.+++..+..+.+|++.|+..++.+++++|++++. +.+.++..|.||+|+|+..  ++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~--~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY--GRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHc--CCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999975 7888999999999999988  9999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.7e-30  Score=174.07  Aligned_cols=151  Identities=27%  Similarity=0.403  Sum_probs=136.5

Q ss_pred             cHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC
Q psy8421          33 TPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR  111 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  111 (237)
                      ..|+.||..|+.++|+.|++. +.+++..|..|.||||+|+  . ++.+++++|++.+.+++..+..+.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~--~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM--F-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC--T-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc--c-ccccccccccccccccccccccccccccccccccc
Confidence            458999999999999999965 7889999999999999887  2 68899999999999999888899999999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       112 ~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      .+++++++++|++++.++..|.||+|+|+..  ++.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~--~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCCCeeecccccc--cccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999988  9999999877 6789999999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-29  Score=172.38  Aligned_cols=150  Identities=32%  Similarity=0.458  Sum_probs=133.2

Q ss_pred             CcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC
Q psy8421          32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR  111 (237)
Q Consensus        32 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~  111 (237)
                      .|||+.|++.|+.++|++|+++|++++ .+..|.||||+|+..  ++.++++.++............+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY--GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH--TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999998876 688899999999976  89999999988877777777778888999999999


Q ss_pred             HHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       112 ~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                      .++++++.+++.+.+..+..|.||||+|+..  ++.+++++|+++|++++.+|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~--g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhc--chhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999988888888999999999987  889999999999999999999999999999999999998876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-29  Score=194.85  Aligned_cols=193  Identities=26%  Similarity=0.399  Sum_probs=165.1

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCC---------------------------------CCcHHHHHHHcCChhHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKT---------------------------------QSTPLRAACYDGRLDIVK   48 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~---------------------------------~~t~l~~A~~~g~~~~v~   48 (237)
                      ++.|+..|+.+++++|+++|++++..+..                                 +.||+++|+..++.++++
T Consensus       169 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  248 (408)
T d1n11a_         169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA  248 (408)
T ss_dssp             HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhh
Confidence            56788899999999999988887655444                                 456666677777777777


Q ss_pred             HHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc
Q psy8421          49 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT  128 (237)
Q Consensus        49 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~  128 (237)
                      ++++.+...+..+..|.||++.++..  ++.+++++|++.|++++..+..+.||++.++..++.++++++++.|++++.+
T Consensus       249 ~~~~~~~~~~~~~~~g~~~l~~a~~~--~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~  326 (408)
T d1n11a_         249 LLLSKQANGNLGNKSGLTPLHLVAQE--GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK  326 (408)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHH--TCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC
T ss_pred             hhhccccccccccCCCCChhhhhhhc--CcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccccc
Confidence            77777777777888889999999966  8999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH---HcCCCcccccC
Q psy8421         129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI---EHGADLNITNH  198 (237)
Q Consensus       129 ~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll---~~g~~~~~~~~  198 (237)
                      +..|.||||+|+..  ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.   +++.+....++
T Consensus       327 d~~G~T~Lh~A~~~--g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         327 TKLGYSPLHQAAQQ--GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             CTTSCCHHHHHHHT--TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             CCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            99999999999988  9999999999999999999999999999999999999998664   34555555554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-28  Score=184.04  Aligned_cols=193  Identities=26%  Similarity=0.362  Sum_probs=160.5

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCC---------------------------------CCCcHHHHHHHcCChhHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTK---------------------------------TQSTPLRAACYDGRLDIVK   48 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~---------------------------------~~~t~l~~A~~~g~~~~v~   48 (237)
                      |+.|+..|+.+++++|++.+......+.                                 .+.++++.|+..++.+.+.
T Consensus        43 L~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  122 (285)
T d1wdya_          43 LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK  122 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhh
Confidence            5678999999999999998876654444                                 3455666666666666666


Q ss_pred             HHHHcCCCccc----------cCcCCCcHHHHHHHhCCCCHHHHHHHHH-cCCCCccCCCCCCCHHHHHHhc----CCHH
Q psy8421          49 YLIEHGADLNI----------TNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYD----GRLD  113 (237)
Q Consensus        49 ~Ll~~~~~~~~----------~~~~~~~~l~~a~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~----~~~~  113 (237)
                      .++....+++.          ....|.||||+|+..  ++.+++++|++ .|++++..+..+.++...+...    +...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  200 (285)
T d1wdya_         123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             HHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH--TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhcccCchHHHHHHHc--CCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHH
Confidence            66655444332          235589999999977  99999999997 5789999999998888766543    3357


Q ss_pred             HHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421         114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD  192 (237)
Q Consensus       114 ~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  192 (237)
                      ++++|+++|++++.++..|.||||+|+..  ++.+++++|++ .|.+++.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus       201 i~~~Li~~ga~~n~~~~~g~t~L~~a~~~--~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         201 ITHLLLDHGADVNVRGERGKTPLILAVEK--KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHHHT--TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             HHHHHHHCCCCCCccCCCCCCccchhhhc--CcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999999999999999999999999988  99999999997 5899999999999999999999999999999999999


Q ss_pred             cccccC
Q psy8421         193 LNITNH  198 (237)
Q Consensus       193 ~~~~~~  198 (237)
                      +|++|.
T Consensus       279 ~n~~d~  284 (285)
T d1wdya_         279 TDCGDL  284 (285)
T ss_dssp             SCCSSC
T ss_pred             CCcccC
Confidence            999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-29  Score=172.43  Aligned_cols=149  Identities=24%  Similarity=0.326  Sum_probs=139.2

Q ss_pred             chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.||..|+.++|+.|++. +.+++..|..|.||||+|+ .|+.+++++|++++.+++..+..|.+|+++++..  ++.+
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~--~~~~   82 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART--GFLD   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc--cccc
Confidence            5678899999999999975 6889999999999999987 4889999999999999999999999999999965  9999


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      +++++++.+++++.++..|.+|+|+|+..|+.+++++|+ .|++++.++..|.||+|+|+..  ++.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~--g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQR--GAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHS--CCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHc--CCHHHHHHHHhh
Confidence            999999999999999999999999999999999999887 6889999999999999999988  999999999865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=5.7e-28  Score=172.71  Aligned_cols=181  Identities=25%  Similarity=0.313  Sum_probs=165.0

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      |+.||+.|+.+++++|++.|++++..+..+.++++.++..++............ ........+.++.+.+...  ....
T Consensus        27 L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  104 (209)
T d1ot8a_          27 LHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL--AIEG  104 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT--TCTT
T ss_pred             HHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cchh
Confidence            678999999999999999999999999999999999999999887777765433 3334556678888888854  7888


Q ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421          81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV  160 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~  160 (237)
                      ..+.|...+.+++.++..|.||++.++..+..++++.+++.+.+++..+..|.||||+|+..  ++.+++++|+++|+++
T Consensus       105 ~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~gad~  182 (209)
T d1ot8a_         105 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE--GSYEASKALLDNFANR  182 (209)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCT
T ss_pred             hhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccc--cHHHHHHHHHHCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999988  9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421         161 NHSTKTQSTPLRAACYDGRLDIVKYL  186 (237)
Q Consensus       161 ~~~~~~~~t~l~~a~~~~~~~~~~~L  186 (237)
                      +.+|..|+||||+|++.|+.++|++|
T Consensus       183 n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         183 EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=2e-31  Score=204.61  Aligned_cols=216  Identities=16%  Similarity=0.113  Sum_probs=148.9

Q ss_pred             chhhccCCcHHHHHH---HHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC--cCCCcHHHHHHHhCC
Q psy8421           2 IAAYKGAGHLSVIKT---LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--HYNNSCLMIAAYKGA   76 (237)
Q Consensus         2 l~~a~~~g~~~~~~~---L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~   76 (237)
                      ++.||++|+.+++++   |++.|++++..+..|.||||+||..|+.++|++|+++|++++..+  ..|.||||+|+..  
T Consensus        94 L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~--  171 (346)
T d2ajaa1          94 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN--  171 (346)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT--
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH--
Confidence            457888999877665   688899999999899999999999999999999999999888764  4588999999965  


Q ss_pred             CCHHHHHHHHHcCCCCc---cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-------CchhHHHHHcCCCC
Q psy8421          77 GHLSVIKTLVHAGADVN---HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN-------NSCLMIAAYKGAGH  146 (237)
Q Consensus        77 ~~~~~~~~ll~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-------~t~l~~a~~~~~~~  146 (237)
                      |+.+++++|++.|+...   ..+..+.+|++.|+.+|+.+++++|++.|++++..+...       .++++.+...  +.
T Consensus       172 g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  249 (346)
T d2ajaa1         172 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN--RL  249 (346)
T ss_dssp             TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHH--HH
T ss_pred             hhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhc--cc
Confidence            99999999999886543   233456677888888999999999998877655433222       2333333322  22


Q ss_pred             HHHHHHHHhCC--CCCCCCCC-------CCCCHHHHHHHcCChhHHHHHHHcCCC-----cccccCCCCcHHHHHHHhCc
Q psy8421         147 LSVIKTLVHAG--ADVNHSTK-------TQSTPLRAACYDGRLDIVKYLIEHGAD-----LNITNHYNNSCLMIAAYKGI  212 (237)
Q Consensus       147 ~~~~~~l~~~~--~~~~~~~~-------~~~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~a~~~~~  212 (237)
                      .+....+....  ...+..+.       .+.++++.++..+..+++++|++.+..     .+..+..|+||||+|++.|.
T Consensus       250 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn  329 (346)
T d2ajaa1         250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN  329 (346)
T ss_dssp             HHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTC
T ss_pred             hHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCc
Confidence            22222222111  11122221       123678888889999999999987654     33445678999999999996


Q ss_pred             cccccCccccc
Q psy8421         213 DVGRVGPGLFD  223 (237)
Q Consensus       213 ~~~~~~~~~~~  223 (237)
                      .  ++.+.|++
T Consensus       330 ~--e~v~lLL~  338 (346)
T d2ajaa1         330 Q--GACALLLS  338 (346)
T ss_dssp             T--THHHHHTT
T ss_pred             H--HHHHHHhC
Confidence            6  55555554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-29  Score=190.61  Aligned_cols=182  Identities=19%  Similarity=0.195  Sum_probs=126.7

Q ss_pred             cCCCCCCC-CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhC----CCC-HHHHHHHHHcCCCCc
Q psy8421          20 AGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG----AGH-LSVIKTLVHAGADVN   93 (237)
Q Consensus        20 ~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~----~~~-~~~~~~ll~~~~~~~   93 (237)
                      .+.+++.. |..|.||||+||..|+.++|++|+++|++++.+|..|+||||.|+..+    .+. .++++++..   .+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhh
Confidence            45677755 889999999999999999999999999999999999999999999641    122 244444433   356


Q ss_pred             cCCCCCCCHHHHHHhcCC----HH--------HHHHHHHcCCCC-ccccCCCCchhHHHHHcCCCCHHHH-----HHHHh
Q psy8421          94 HSTKTQSTPLRAACYDGR----LD--------IVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVI-----KTLVH  155 (237)
Q Consensus        94 ~~~~~~~~~l~~a~~~~~----~~--------~~~~L~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~-----~~l~~  155 (237)
                      ..+..|+||+|.++..+.    ..        ++.++.+.+... ......+.++++.+...  .....+     ..++.
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE--RKDSILENLDLKWIIA  249 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------------CHHHHHCSHHHHHH
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhc--chHHHHHHHhhHHHHh
Confidence            677889999998876443    22        334555554333 22333444555544433  221111     12222


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHH
Q psy8421         156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA  208 (237)
Q Consensus       156 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  208 (237)
                        ..+|.+|.+|+||||+|++.|+.+++++|+++|++++++|..|+||+++|+
T Consensus       250 --~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 --NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             --cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence              236889999999999999999999999999999999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1e-27  Score=163.18  Aligned_cols=147  Identities=23%  Similarity=0.366  Sum_probs=138.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV   81 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   81 (237)
                      |+.|++.|+.++++.|+++|++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++..  .+.++
T Consensus         6 L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   82 (153)
T d1awcb_           6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE--GHANI   82 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccc--cccee
Confidence            466899999999999999999887 688999999999999999999999988888888888889999999977  89999


Q ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421          82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL  153 (237)
Q Consensus        82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l  153 (237)
                      ++++...+.+.+.++..|.||||+|+..|+.+++++|++.|++++.++..|.||+|+|+..  ++.+++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~--g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN--GNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHc--CCHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999988  999999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.9e-26  Score=162.31  Aligned_cols=190  Identities=26%  Similarity=0.350  Sum_probs=164.5

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHH----cCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHH
Q psy8421          29 KTQSTPLRAACYDGRLDIVKYLIE----HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR  104 (237)
Q Consensus        29 ~~~~t~l~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~  104 (237)
                      ++|.||||+||..|+.++++.|++    .|.+++.+|..|.||||+|+..  |+.+++++|+++|++.+.....+.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~--~~~~iv~~Ll~~ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLPSVVRLLVTAGASPMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcc--cccccccccccccccccccccccccccc
Confidence            369999999999999999998874    7899999999999999999966  9999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCC----CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCC
Q psy8421         105 AACYDGRLDIVKYLIEHGAD----LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN-HSTKTQSTPLRAACYDGR  179 (237)
Q Consensus       105 ~a~~~~~~~~~~~L~~~~~~----~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~t~l~~a~~~~~  179 (237)
                      .|....+.++++.+......    .+.......++++.+...  ........+.....+.. .....+.++++.|+..+.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT--ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccchhhhhhcccccccccccccccccccccccccc--ccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            99999999999888775322    334456678899999887  88888888888776544 456678999999999999


Q ss_pred             hhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421         180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR  224 (237)
Q Consensus       180 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~  224 (237)
                      ..++++++++|.+++.+|..|.||+|+|+..|..  ++...|++.
T Consensus       157 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~  199 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL--PLVRTLVRS  199 (228)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH--HHHHHHHHT
T ss_pred             hhhhhhhhhhccccccccccCcchHHHHHHcCCH--HHHHHHHHC
Confidence            9999999999999999999999999999999865  445555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=7.7e-28  Score=156.21  Aligned_cols=105  Identities=32%  Similarity=0.416  Sum_probs=97.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh
Q psy8421         101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  180 (237)
Q Consensus       101 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  180 (237)
                      |||++|++.|+.+++++|+++|++++.++..|.||+|+|+..  ++.+++++++++|++++.+|..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~--~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH--STTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc--cccccccccccccceeeecccccccchhhhhhcCch
Confidence            689999999999999999999999999999999999999988  889999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCCcccccCCCCcHHHHH
Q psy8421         181 DIVKYLIEHGADLNITNHYNNSCLMIA  207 (237)
Q Consensus       181 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a  207 (237)
                      +++++|+++|++++.+|..|+||+|+|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            999999999999999999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.6e-27  Score=153.72  Aligned_cols=119  Identities=27%  Similarity=0.370  Sum_probs=72.2

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC-CHHHHHHhc
Q psy8421          31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYD  109 (237)
Q Consensus        31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~l~~a~~~  109 (237)
                      +.++||+|+..|+.++|++|+++|++++.++..|.||+|+|+ .  |+.+++++|+++|++++..+..+. +|+|+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M--GSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T--TCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c--cccccccccccccccccccccccccccccccccc
Confidence            345666777767777777666666666666666666666554 2  566666666666666665555443 456666666


Q ss_pred             CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHH
Q psy8421         110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV  154 (237)
Q Consensus       110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~  154 (237)
                      |+.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|+
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~--g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL--GHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHHS
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHc--CCHHHHHHHH
Confidence            666666666655555555555555555555555  5555555554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2e-26  Score=151.02  Aligned_cols=118  Identities=25%  Similarity=0.340  Sum_probs=69.7

Q ss_pred             CcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC-chhHHHHHcC
Q psy8421          65 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN-SCLMIAAYKG  143 (237)
Q Consensus        65 ~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~-t~l~~a~~~~  143 (237)
                      .++||+|+..  |+.+++++|+++|++++.++..|.+|+|.|+ .|+.+++++|+++|++++..+..+. +|+|+|+.. 
T Consensus         4 ~~~L~~Aa~~--G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~-   79 (125)
T d1bi7b_           4 ADWLATAAAR--GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE-   79 (125)
T ss_dssp             TTHHHHHHHH--TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH-
T ss_pred             hhHHHHHHHC--CCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-
Confidence            4556666644  5666666666666666666666666665443 4556666666666666655555443 456666655 


Q ss_pred             CCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421         144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI  187 (237)
Q Consensus       144 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  187 (237)
                       ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        80 -g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 -GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             -TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             -ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence             5666666666666666666666666666666666666666554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.2e-26  Score=150.43  Aligned_cols=105  Identities=32%  Similarity=0.416  Sum_probs=78.8

Q ss_pred             cHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCH
Q psy8421          33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL  112 (237)
Q Consensus        33 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~  112 (237)
                      |||.+|++.|+.++|++|+++|++++.++..|.||||+|+..  ++.++++++++.|++++.++..|.||||+|+..++.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~--~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH--STTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc--cccccccccccccceeeecccccccchhhhhhcCch
Confidence            677777777777777777777777777777777777777765  777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCCCccccCCCCchhHHH
Q psy8421         113 DIVKYLIEHGADLNITNHYNNSCLMIA  139 (237)
Q Consensus       113 ~~~~~L~~~~~~~~~~~~~~~t~l~~a  139 (237)
                      +++++|+++|++++.++..|.||+|+|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            777777777777777777777777665

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.8e-26  Score=148.68  Aligned_cols=92  Identities=28%  Similarity=0.416  Sum_probs=45.9

Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHH
Q psy8421          34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD  113 (237)
Q Consensus        34 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  113 (237)
                      +|+.|+..|+.++|++|+++|++++.+|..|.||||+|+..  ++.+++++|++.|++++.++..|.||||+|+.+|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~--~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA--GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH--TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccc--ccccccccccccccccccccccCcccccccchhhHHH
Confidence            44555555555555555555555555555555555555543  4555555555554444444444444444444444444


Q ss_pred             HHHHHHHcCCCCcc
Q psy8421         114 IVKYLIEHGADLNI  127 (237)
Q Consensus       114 ~~~~L~~~~~~~~~  127 (237)
                      ++++|+++|++++.
T Consensus        82 ~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          82 VCKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCccc
Confidence            44444444444443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-26  Score=150.85  Aligned_cols=119  Identities=22%  Similarity=0.277  Sum_probs=108.4

Q ss_pred             CchhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421           1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS   80 (237)
Q Consensus         1 ~l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   80 (237)
                      +|..|+..|+++++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..  |+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~--g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--NNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchh--hHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999966  9999


Q ss_pred             HHHHHHHcCCCCccCCC-CCCCHHHHH--HhcCCHHHHHHHHHc
Q psy8421          81 VIKTLVHAGADVNHSTK-TQSTPLRAA--CYDGRLDIVKYLIEH  121 (237)
Q Consensus        81 ~~~~ll~~~~~~~~~~~-~~~~~l~~a--~~~~~~~~~~~L~~~  121 (237)
                      ++++|+++|++++..+. .+.+++..+  ...|+.+++++|++.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999987664 477877665  567889999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.3e-24  Score=145.64  Aligned_cols=119  Identities=16%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHHc---CChhHHHHHHHcCCCccccCcCCCcHHHHHH
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHS------TKTQSTPLRAACYD---GRLDIVKYLIEHGADLNITNHYNNSCLMIAA   72 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~------~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~   72 (237)
                      ++.|++++++..+..++..|.+++..      +..|.||||+|+..   |+.+++++|+++|++++.++..|.||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            34566777777777777777665433      45677777777764   4567777777777777777777777777777


Q ss_pred             HhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcC
Q psy8421          73 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG  122 (237)
Q Consensus        73 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~  122 (237)
                      ..  |+.+++++|+++|++++.++..|.||+|+|+..++.+++++|++.+
T Consensus        90 ~~--~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          90 LT--DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cc--ccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            54  7777777777777777777777777777777777777777777654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.5e-23  Score=138.13  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             HHHHHHHcCChhHHHHHHHcCCCcccc------CcCCCcHHHHHHHhC-CCCHHHHHHHHHcCCCCccCCCCCCCHHHHH
Q psy8421          34 PLRAACYDGRLDIVKYLIEHGADLNIT------NHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPLRAA  106 (237)
Q Consensus        34 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~~~l~~a~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a  106 (237)
                      .|..|++.+++..+..++..|.+++.+      +..|.||||+|+..+ .++.+++++|+++|++++.++..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            355677777777777777777665543      444566666666431 1345555555555555555555555555555


Q ss_pred             HhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421         107 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA  156 (237)
Q Consensus       107 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~  156 (237)
                      +..|+.+++++|+++|++++.++..|.||+|+|+..  ++.+++++|++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~--~~~~i~~~L~~~  136 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL--KHEHCEELLTQA  136 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHc--CCHHHHHHHHHh
Confidence            555555555555555555555555555555555544  445555555443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1e-23  Score=158.53  Aligned_cols=170  Identities=19%  Similarity=0.236  Sum_probs=115.4

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---hhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCC-
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR---LDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGA-   76 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~---~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~-   76 (237)
                      ||.||+.|+++++++|++.|++++..|..|.||||.|+..++   ...++.+++. ...+...+..|+||||+++.... 
T Consensus       111 LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~  190 (301)
T d1sw6a_         111 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM  190 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCc
Confidence            688999999999999999999999999999999999998775   2223333322 33466778899999998885421 


Q ss_pred             -CCHHH--------HHHHHHcCCCC-ccCCCCCCCHHHHHHhcCCHHHH-----HHHHHcCCCCccccCCCCchhHHHHH
Q psy8421          77 -GHLSV--------IKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIV-----KYLIEHGADLNITNHYNNSCLMIAAY  141 (237)
Q Consensus        77 -~~~~~--------~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~-----~~L~~~~~~~~~~~~~~~t~l~~a~~  141 (237)
                       +....        +.++.+.+... ......+.++.+.+.........     ..++..  .++.+|..|+||||+|+.
T Consensus       191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in~~D~~G~TpLh~A~~  268 (301)
T d1sw6a_         191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLNAQDSNGDTCLNIAAR  268 (301)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--TTTCCCTTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--CccCCCCCCCCHHHHHHH
Confidence             22222        33444443322 22333344444444333322222     222232  367789999999999999


Q ss_pred             cCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy8421         142 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC  175 (237)
Q Consensus       142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  175 (237)
                      .  ++.+++++|+++|++++.+|..|.|||++|+
T Consensus       269 ~--g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         269 L--GNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             H--CCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             c--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            9  9999999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=3.8e-25  Score=169.39  Aligned_cols=184  Identities=17%  Similarity=0.164  Sum_probs=131.8

Q ss_pred             chhhccCCcHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCChhHHHHHHHcCCCcc---ccCcCCCcHHHHHHHhCC
Q psy8421           2 IAAYKGAGHLSVIKTLVHAGADVNHST--KTQSTPLRAACYDGRLDIVKYLIEHGADLN---ITNHYNNSCLMIAAYKGA   76 (237)
Q Consensus         2 l~~a~~~g~~~~~~~L~~~~~~~~~~~--~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~~~l~~a~~~~~   76 (237)
                      |+.||++|+.++|++|++.|++++..+  ..|.||||+|+..|+.++|++|++.|++..   ..+..+.||++.|+  ..
T Consensus       130 L~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~--~~  207 (346)
T d2ajaa1         130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV--GR  207 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS--TT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHh--hc
Confidence            578999999999999999999987654  458999999999999999999999987653   34455678888888  45


Q ss_pred             CCHHHHHHHHHcCCCCccCC-------CCCCCHHHHHHhcCCHHHHHHHHHcCCC--Ccccc-------CCCCchhHHHH
Q psy8421          77 GHLSVIKTLVHAGADVNHST-------KTQSTPLRAACYDGRLDIVKYLIEHGAD--LNITN-------HYNNSCLMIAA  140 (237)
Q Consensus        77 ~~~~~~~~ll~~~~~~~~~~-------~~~~~~l~~a~~~~~~~~~~~L~~~~~~--~~~~~-------~~~~t~l~~a~  140 (237)
                      |+.+++++|++.|++++..+       ....+++..+...+..+....+.....+  .+..+       ..+.++++.++
T Consensus       208 g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~  287 (346)
T d2ajaa1         208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN  287 (346)
T ss_dssp             CCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHh
Confidence            99999999999887654322       1222333443333333332222222111  11111       12245677777


Q ss_pred             HcCCCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421         141 YKGAGHLSVIKTLVHAGAD-----VNHSTKTQSTPLRAACYDGRLDIVKYLIEH  189 (237)
Q Consensus       141 ~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  189 (237)
                      ..  +..+++++|++.+..     .+..+.+|+||||+|++.|+.+++++|++.
T Consensus       288 ~~--~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         288 DE--VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CG--GGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cC--ChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            55  889999999987653     334556789999999999999999999863