Psyllid ID: psy842

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccEEEEEccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MSSLLRRLVPLTHkiaitadgttvvcwhpeqpfpyehslplpvteqqstnsILKVQNVQEIYNVFKPKKEEFVRQDLmnitftnkhrwfpvrkmrqkkryfkplipdreyl
Flexible Loop (DISEMBL)
MSSLLRRLVPLTHkiaitadgttVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMnitftnkhrwfpvrkmrqkkryfkplipdreyl
Low Complexity Region (SEG)
MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL
Disordered region (IsUnstruct)
****LRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVT****TNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFK*********
Disordered Region (DISOPRED)
********VPLTHKIAITADGTTVVCWHPEQPFPYEHSLPL********************************RQDLMNITFTNKHRWFPVRKM*****************
Disordered Region (DISEMBL)
MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL
Disordered Region (DISPRO)
*SSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRY***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9CPV3	142	39S ribosomal protein L42	yes	N/A	0.801	0.626	0.329	2e-08
Q5R4S3	139	39S ribosomal protein L42	no	N/A	0.675	0.539	0.347	8e-08
Q9Y6G3	142	39S ribosomal protein L42	yes	N/A	0.738	0.577	0.323	9e-08
P82927	142	39S ribosomal protein L42	yes	N/A	0.738	0.577	0.303	2e-07
P0C2B9	141	28S ribosomal protein L42	yes	N/A	0.810	0.638	0.296	7e-07

>sp|Q9CPV3|RM42_MOUSE 39S ribosomal protein L42, mitochondrial OS=Mus musculus GN=Mrpl42 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 15  IAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEF-- 72
           +A+TADG T+VC+HP    PYEH+ P+P  +    N     Q ++    V K K+ E   
Sbjct: 48  LALTADGRTIVCYHPSVDIPYEHTKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGP 107

Query: 73  VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
           + + L  + +T KHRW+P  +   +++   P
Sbjct: 108 MIEQLSKVFYTTKHRWYPHGQYHNRRKKLNP 138

Mus musculus (taxid: 10090)

>sp|Q5R4S3|RM42_PONAB 39S ribosomal protein L42, mitochondrial OS=Pongo abelii GN=MRPL42 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 17/92 (18%)

Query: 14  KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEEF 72
           ++A+T+DG T+VC+HP    PYEH+ P+P  +         V N +E ++ V K + EE 
Sbjct: 48  ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD--------PVHNNEETHDQVLKTRLEEK 99

Query: 73  VR--------QDLMNITFTNKHRWFPVRKMRQ 96
           V         + L  + FT KHRW+P  + R+
Sbjct: 100 VEHLEEGPMIEQLSKMFFTTKHRWYPHGRCRK 131

Pongo abelii (taxid: 9601)

>sp|Q9Y6G3|RM42_HUMAN 39S ribosomal protein L42, mitochondrial OS=Homo sapiens GN=MRPL42 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 17/99 (17%)

Query: 14  KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEEF 72
           ++A+T+DG T+VC+HP    PYEH+ P+P  +         V N +E ++ V K + EE 
Sbjct: 48  ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD--------PVHNNEETHDQVLKTRLEEK 99

Query: 73  VR--------QDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
           V         + L  + FT KHRW+P  +  + ++   P
Sbjct: 100 VEHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNP 138

Homo sapiens (taxid: 9606)

>sp|P82927|RM42_BOVIN 39S ribosomal protein L42, mitochondrial OS=Bos taurus GN=MRPL42 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 17/99 (17%)

Query: 14  KIAITADGTTVVCWHPEQPFPYEHSLPL----PVTEQQSTNSILKVQNVQEIYNVFKPKK 69
           ++A+T+D  T+VC+HP    PYEH+ P+    PV   + T+ ++    ++E        K
Sbjct: 48  ELALTSDARTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDLVLKTRLEE--------K 99

Query: 70  EEFVRQD-----LMNITFTNKHRWFPVRKMRQKKRYFKP 103
            E + Q      L  + FT KHRW+P  +  +++R   P
Sbjct: 100 SEHLEQGPMIEQLSKMFFTTKHRWYPRGQYHRRRRKLNP 138

Bos taurus (taxid: 9913)

>sp|P0C2B9|RM42_RAT 28S ribosomal protein L42, mitochondrial OS=Rattus norvegicus GN=Mrpl42 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 14  KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQ-EIYNVFKPKKEEF 72
           ++A+T+DG T+VC+HP    PYEH+ P+P  +    N     Q ++ ++    K  ++  
Sbjct: 47  ELALTSDGRTIVCYHPSVDVPYEHTKPIPHPDLLHNNEETHEQILRTKLEGNHKHLEQGP 106

Query: 73  VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
           + + L  + FT KHRW+P  +  + ++   P
Sbjct: 107 MIEQLSKVFFTTKHRWYPHGQYHRCRKKLNP 137

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
328705379	117	PREDICTED: 39S ribosomal protein L42, mi	0.972	0.923	0.441	2e-17
195377946	128	GJ13606 [Drosophila virilis] gi|19415490	0.873	0.757	0.445	2e-17
239792197	119	ACYPI009119 [Acyrthosiphon pisum]	0.864	0.806	0.463	3e-17
195129449	128	GI11410 [Drosophila mojavensis] gi|19392	0.891	0.773	0.417	7e-17
350422914	119	PREDICTED: 39S ribosomal protein L42, mi	0.882	0.823	0.446	2e-16
340727181	119	PREDICTED: 39S ribosomal protein L42, mi	0.882	0.823	0.446	2e-16
195021044	127	GH16997 [Drosophila grimshawi] gi|193898	0.873	0.763	0.445	4e-16
242015566	125	hypothetical protein Phum_PHUM380210 [Pe	0.810	0.72	0.439	4e-16
195582086	124	GD10711 [Drosophila simulans] gi|1941928	0.873	0.782	0.415	6e-16
91078416	119	PREDICTED: similar to mitochondrial ribo	0.954	0.890	0.456	7e-16

>gi|328705379|ref|XP_003242780.1| PREDICTED: 39S ribosomal protein L42, mitochondrial-like [Acyrthosiphon pisum]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 3/111 (2%)

Query: 1   MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQE 60
           +SS + R       I +T D +T+VC+HPE  FPYE + PLPV + Q  NS+LKVQN   
Sbjct: 10  LSSTVSRSSKNERAIVVTDDASTIVCYHPESSFPYECTKPLPVNKVQD-NSVLKVQNKDF 68

Query: 61  IYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
           ++ VF     E V+Q+LM +T+T KHRW P +K   K+ +    + DREYL
Sbjct: 69  VHEVFSKPNNEIVQQELMKMTYTTKHRWVPPKKW--KRNFAHQKLVDREYL 117

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377946|ref|XP_002047748.1| GJ13606 [Drosophila virilis] gi|194154906|gb|EDW70090.1| GJ13606 [Drosophila virilis]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 11  LTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKE 70
           L   +A+T +G T+V WHP+ PFPYEH+ PLP   +  T+ ++K   ++   N FK K  
Sbjct: 32  LVDSVAVTRNGKTIVAWHPDTPFPYEHTKPLPTIVENQTSEVIKEAALKTAMNAFKNKHP 91

Query: 71  EFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
           E  RQ+LM +T T KHRWFP  + R KK    P+  DR YL
Sbjct: 92  EVARQELMRLTHTTKHRWFP--RARDKKAKKTPM--DRPYL 128

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239792197|dbj|BAH72467.1| ACYPI009119 [Acyrthosiphon pisum]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 1   MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQE 60
           +SS + R       I +T D +T+VC+HPE  FPYE + PLPV + Q  NS+LKVQN   
Sbjct: 10  LSSTVSRSSKNERAIVVTDDASTIVCYHPESSFPYECTKPLPVNKVQD-NSVLKVQNKDF 68

Query: 61  IYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQK 97
           ++ VF     E V+Q+LM +T+T KHRW P +KM +K
Sbjct: 69  VHEVFSKPNNEIVQQELMKMTYTTKHRWVPPKKMEKK 105

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129449|ref|XP_002009168.1| GI11410 [Drosophila mojavensis] gi|193920777|gb|EDW19644.1| GI11410 [Drosophila mojavensis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 4/103 (3%)

Query: 9   VPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPK 68
           + L  ++A+T +G T+V WHP+ PFPYEH+ PLP   ++ ++ ++K   +Q     FK K
Sbjct: 30  ISLVDRVAVTKNGKTIVAWHPDTPFPYEHTKPLPQFVEKQSSDVIKETALQTAMTAFKNK 89

Query: 69  KEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
             E  RQ+LM +T+T KHRWFP  + R+ K+   P+  DR YL
Sbjct: 90  FPEVARQELMKLTYTTKHRWFPRARDRKAKK--TPM--DRPYL 128

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422914|ref|XP_003493327.1| PREDICTED: 39S ribosomal protein L42, mitochondrial-like [Bombus impatiens]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 5/103 (4%)

Query: 9   VPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPK 68
           V L  +IAI  +   ++CWHPE+ FPYE+SLPLP  +Q S+NS+L +   +EI  VFK K
Sbjct: 22  VKLPSEIAIPMNKDMIICWHPEREFPYEYSLPLPEEKQISSNSVLCIGE-KEIAEVFKQK 80

Query: 69  KEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
           KEE V ++L  +T+T KHRW+P    +  +R  + +  +R YL
Sbjct: 81  KEEVVVEELSKLTYTTKHRWYP----KNWRRRLRKVETERPYL 119

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727181|ref|XP_003401927.1| PREDICTED: 39S ribosomal protein L42, mitochondrial-like [Bombus terrestris] gi|340727543|ref|XP_003402101.1| PREDICTED: 39S ribosomal protein L42, mitochondrial-like [Bombus terrestris]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 5/103 (4%)

Query: 9   VPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPK 68
           V L  +IAI  +   ++CWHPE+ FPYE+SLPLP  +Q S+NS+L +   +EI  VFK K
Sbjct: 22  VKLPSEIAIPMNKDMIICWHPEREFPYEYSLPLPEEKQISSNSVLCIGE-KEIAEVFKQK 80

Query: 69  KEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
           KEE V ++L  +T+T KHRW+P    +  +R  + +  +R YL
Sbjct: 81  KEEVVVEELSKLTYTTKHRWYP----KNWRRRLRKVETERPYL 119

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195021044|ref|XP_001985318.1| GH16997 [Drosophila grimshawi] gi|193898800|gb|EDV97666.1| GH16997 [Drosophila grimshawi]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 11  LTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKE 70
           L   +A+T +G T+V WHPE  FPYEH+ PLP T ++ ++  +K   +Q   + FK K  
Sbjct: 31  LVDSVAVTRNGRTIVAWHPETKFPYEHTKPLPHTVEKQSSEYIKETAMQSAMSAFKNKHP 90

Query: 71  EFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
           E  RQ+LM +T T KHRWFP  + R KK    P+  DR YL
Sbjct: 91  EVARQELMKLTHTTKHRWFP--RARDKKAKKTPM--DRPYL 127

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015566|ref|XP_002428424.1| hypothetical protein Phum_PHUM380210 [Pediculus humanus corporis] gi|212513036|gb|EEB15686.1| hypothetical protein Phum_PHUM380210 [Pediculus humanus corporis]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1   MSSLLR-RLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQ 59
           +S+L+R +    +  I +T D + VVCWHPE+ +PYE S P+   ++  +NS+LKVQ+ +
Sbjct: 17  VSALVREKKTKCSANITMTDDSSVVVCWHPEESYPYEMSQPIKEKKKIVSNSLLKVQSNK 76

Query: 60  EIYNVFKPKKEEFVRQDLMNITFTNKHRWFP 90
           E+ +V KPK+++ VRQ+LM +T + KH WFP
Sbjct: 77  ELLSVLKPKRKDLVRQELMALTHSQKHVWFP 107

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195582086|ref|XP_002080859.1| GD10711 [Drosophila simulans] gi|194192868|gb|EDX06444.1| GD10711 [Drosophila simulans]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 11  LTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKE 70
           L   +A+T +G T+V WHP+ P PYE++LPLP   +  +++++K   ++     FK K  
Sbjct: 28  LVEAVAVTKNGRTIVAWHPDTPVPYENTLPLPKISEIQSSAVVKESALKTAMRAFKSKHP 87

Query: 71  EFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
           E  RQ+LM +T T KHRWFP  + R KK    P+  DR YL
Sbjct: 88  EVARQELMQLTHTTKHRWFP--RARDKKAKQTPM--DRPYL 124

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078416|ref|XP_974657.1| PREDICTED: similar to mitochondrial ribosomal protein L42 CG12921-PA [Tribolium castaneum] gi|270003875|gb|EFA00323.1| hypothetical protein TcasGA2_TC003161 [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 8/114 (7%)

Query: 1   MSSLLRRLVPL---THKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQN 57
           +S++ +RL       HKI +T D +T V WHP+Q FPYE + PLP  + + T S+LK Q 
Sbjct: 11  ISTVTKRLFSAKFPDHKIVLTDDESTYVAWHPKQDFPYECTQPLPEKQVEDT-SVLKTQL 69

Query: 58  VQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
             ++  VF  K  E  RQ+LMNIT T KHRWFP  + R K+    P+  DREYL
Sbjct: 70  TPQLKEVFNKKTPEQARQELMNITHTTKHRWFP--RARDKRAKKTPM--DREYL 119

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0033480	124	mRpL42 "mitochondrial ribosoma	0.873	0.782	0.405	4.6e-18
MGI|MGI:1333774	142	Mrpl42 "mitochondrial ribosoma	0.801	0.626	0.329	4.5e-11
UNIPROTKB|A6NCI0	142	MRPL42 "39S ribosomal protein	0.774	0.605	0.305	5.2e-10
UNIPROTKB|Q9Y6G3	142	MRPL42 "39S ribosomal protein	0.774	0.605	0.305	5.2e-10
UNIPROTKB|F1NWY7	143	F1NWY7 "Uncharacterized protei	0.810	0.629	0.285	6.6e-10
RGD|1304915	141	Mrpl42 "mitochondrial ribosoma	0.810	0.638	0.296	1.1e-09
UNIPROTKB|P0C2B9	141	Mrpl42 "28S ribosomal protein	0.810	0.638	0.296	1.1e-09
UNIPROTKB|P82927	142	MRPL42 "39S ribosomal protein	0.783	0.612	0.297	1.4e-09
UNIPROTKB|I3LUX1	128	MRPL42 "Uncharacterized protei	0.621	0.539	0.360	3.6e-09
WB|WBGene00003066	109	lpl-1 [Caenorhabditis elegans	0.810	0.825	0.291	5.3e-08

FB|FBgn0033480 mRpL42 "mitochondrial ribosomal protein L42" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 41/101 (40%), Positives = 61/101 (60%)

Query:    11 LTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKE 70
             L   +A+T +G T+V WHP+ P PYE++LPLP   +  +++++K   ++     FK K  
Sbjct:    28 LVEAVAVTKNGRTIVAWHPDTPVPYENTLPLPEISEIQSSAVVKESALKTAMRAFKSKHP 87

Query:    71 EFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDREYL 111
             E  RQ+LM +T T KHRWFP  + R +K    P+  DR YL
Sbjct:    88 EVARQELMQLTHTTKHRWFP--RARDRKAKQTPM--DRPYL 124

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

MGI|MGI:1333774 Mrpl42 "mitochondrial ribosomal protein L42" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/91 (32%), Positives = 49/91 (53%)

Query:    15 IAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEF-- 72
             +A+TADG T+VC+HP    PYEH+ P+P  +    N     Q ++    V K K+ E   
Sbjct:    48 LALTADGRTIVCYHPSVDIPYEHTKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGP 107

Query:    73 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
             + + L  + +T KHRW+P  +   +++   P
Sbjct:   108 MIEQLSKVFYTTKHRWYPHGQYHNRRKKLNP 138

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|A6NCI0 MRPL42 "39S ribosomal protein L42, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/95 (30%), Positives = 55/95 (57%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLP----VTEQQSTNS-ILKVQNVQEIYNVFKPK 68
             ++A+T+DG T+VC+HP    PYEH+ P+P    V   + T+  +LK +  +++ ++    
Sbjct:    48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHL---- 103

Query:    69 KEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
             +E  + + L  + FT KHRW+P  +  + ++   P
Sbjct:   104 EEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNP 138

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9Y6G3 MRPL42 "39S ribosomal protein L42, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/95 (30%), Positives = 55/95 (57%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLP----VTEQQSTNS-ILKVQNVQEIYNVFKPK 68
             ++A+T+DG T+VC+HP    PYEH+ P+P    V   + T+  +LK +  +++ ++    
Sbjct:    48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHL---- 103

Query:    69 KEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
             +E  + + L  + FT KHRW+P  +  + ++   P
Sbjct:   104 EEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNP 138

GO:0006412 "translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1NWY7 F1NWY7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 26/91 (28%), Positives = 52/91 (57%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFV 73
             ++A+T+D  T+VC+HP    PYEH+ P+P  +  +       Q ++   N  K K +  +
Sbjct:    49 ELALTSDSKTIVCYHPSLEIPYEHTKPVPRPDPVNNKEETLDQVLKSRLNEEKLKNDRGL 108

Query:    74 R-QDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
               ++L  + +T KHRW+P+ + +++++   P
Sbjct:   109 TIEELSKMFYTTKHRWYPMGQYQRRRKNPNP 139

GO:0005739 "mitochondrion" evidence=IEA

RGD|1304915 Mrpl42 "mitochondrial ribosomal protein L42" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQ-EIYNVFKPKKEEF 72
             ++A+T+DG T+VC+HP    PYEH+ P+P  +    N     Q ++ ++    K  ++  
Sbjct:    47 ELALTSDGRTIVCYHPSVDVPYEHTKPIPHPDLLHNNEETHEQILRTKLEGNHKHLEQGP 106

Query:    73 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
             + + L  + FT KHRW+P  +  + ++   P
Sbjct:   107 MIEQLSKVFFTTKHRWYPHGQYHRCRKKLNP 137

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

UNIPROTKB|P0C2B9 Mrpl42 "28S ribosomal protein L42, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQ-EIYNVFKPKKEEF 72
             ++A+T+DG T+VC+HP    PYEH+ P+P  +    N     Q ++ ++    K  ++  
Sbjct:    47 ELALTSDGRTIVCYHPSVDVPYEHTKPIPHPDLLHNNEETHEQILRTKLEGNHKHLEQGP 106

Query:    73 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
             + + L  + FT KHRW+P  +  + ++   P
Sbjct:   107 MIEQLSKVFFTTKHRWYPHGQYHRCRKKLNP 137

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P82927 MRPL42 "39S ribosomal protein L42, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/94 (29%), Positives = 51/94 (54%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLP----VTEQQSTNSILKVQNVQEIYNVFKPKK 69
             ++A+T+D  T+VC+HP    PYEH+ P+P    V   + T+ ++    ++E     +  +
Sbjct:    48 ELALTSDARTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDLVLKTRLEEKSEHLE--Q 105

Query:    70 EEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
                + Q L  + FT KHRW+P  +  +++R   P
Sbjct:   106 GPMIEQ-LSKMFFTTKHRWYPRGQYHRRRRKLNP 138

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|I3LUX1 MRPL42 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 31/86 (36%), Positives = 48/86 (55%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEE- 71
             ++A+T+DG T+VC+HP    PYEH+ P+P  +         V N++E ++ V K + EE 
Sbjct:    48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDP--------VHNIEETHDLVLKTRLEEK 99

Query:    72 --FVRQ-----DLMNITFTNKHRWFP 90
                + Q      L  + FT KHRW+P
Sbjct:   100 GEHLEQGPMIEQLSKMFFTTKHRWYP 125

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00003066 lpl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query:    14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFV 73
             K+ + A+GT +  WHP Q FPYEH+ P+ +      +   ++    +  ++  P+  E V
Sbjct:    20 KVVVCANGT-IAAWHPPQHFPYEHTKPIDLGSLTKKDQSSRLSAAAKASSI--PR--EPV 74

Query:    74 RQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPDRE 109
               +L +I +T+KH W+  R   ++ R     IP R+
Sbjct:    75 NAELKDIFYTSKHEWYS-RTREERLRNVAAPIPRRK 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111       111   0.00091  102 3  11 22  0.42    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  14.39u 0.10s 14.49t   Elapsed:  00:00:12
  Total cpu time:  14.40u 0.10s 14.50t   Elapsed:  00:00:14
  Start:  Thu Aug 15 12:55:01 2013   End:  Thu Aug 15 12:55:15 2013

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CPV3	RM42_MOUSE	No assigned EC number	0.3296	0.8018	0.6267	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam10210	96	pfam10210, MRP-S32, Mitochondrial 28S ribosomal pr	8e-24

>gnl|CDD|220631 pfam10210, MRP-S32, Mitochondrial 28S ribosomal protein S32

 Score = 86.8 bits (215), Expect = 8e-24
 Identities = 34/85 (40%), Positives = 52/85 (61%)

Query: 15 IAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVR 74
          +A+T+DG T+VCWHP    PYEH+ PLP  +   +N+    Q ++     FK K  E +R
Sbjct: 6  VALTSDGRTIVCWHPSVDVPYEHTKPLPRPDPLHSNAETHEQVLKTALEKFKHKHPEPMR 65

Query: 75 QDLMNITFTNKHRWFPVRKMRQKKR 99
          ++L  + FT KHRW+P  + R+ K+
Sbjct: 66 EELSKVFFTTKHRWYPRGRDRRAKK 90

This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF10210	96	MRP-S32: Mitochondrial 28S ribosomal protein S32;	100.0
KOG4106|consensus	125		100.0

>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length

Probab=100.00  E-value=2.5e-54  Score=305.21  Aligned_cols=96  Identities=41%  Similarity=0.739  Sum_probs=92.1

Q ss_pred             cccceeEEeeCCcEEEEecCCCCCCcccccCCCCCCCCCchhHHHHHHHHHHHHhhcCCchhhhHHHHhhhhcccccccc
Q psy842           10 PLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWF   89 (111)
Q Consensus        10 s~~~~iavTsDG~tIVcwHP~~~fPYEhTKPIp~~d~~~~~~~lk~~~lk~~l~~~k~k~~~~~~eELskmf~TTKHrWy   89 (111)
                      +++++||||+||+|||||||+++||||||||||++++..+++++++|+|++.+++|+.+++|++||||||||||||||||
T Consensus         1 ~c~~~iavT~dG~tIVcwHP~~~fPYEhTKPip~~~~~~~~~~~~d~~lk~~l~~~~~~~~~p~~eeLskmfyTTKHrWy   80 (96)
T PF10210_consen    1 NCKVEIAVTSDGRTIVCWHPEKDFPYEHTKPIPRPDPVSSNEETHDQILKARLSKFKKKKPEPVIEELSKMFYTTKHRWY   80 (96)
T ss_pred             CceeeEEEecCCCEEEEeCCCCCCCcccccCCCCCCCCcchhhhhhHHHHHHHHhhhccCccchHHHHHHhhCCCCcccc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCC
Q psy842           90 PVRKMRQKKRYFKPLIPDR  108 (111)
Q Consensus        90 Pr~q~~~rr~k~~p~p~DR  108 (111)
                      |||  ++||+|+|| |+||
T Consensus        81 Pr~--r~~r~k~~p-p~~r   96 (96)
T PF10210_consen   81 PRG--RDRRAKKTP-PKDR   96 (96)
T ss_pred             ccc--ccccccCCC-CCCC
Confidence            999  699999999 6665

They are identified as the mitochondrial 28S ribosomal proteins S32.

>KOG4106|consensus

Probab=100.00  E-value=4.8e-47  Score=277.42  Aligned_cols=97  Identities=33%  Similarity=0.601  Sum_probs=89.8

Q ss_pred             ccceeEEeeCCcEEEEecCCCCCCcccccCCCCCCCCCchhHHHHHHHHHHHHhhcCCch-hhhHHHHhhhhcccccccc
Q psy842           11 LTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKE-EFVRQDLMNITFTNKHRWF   89 (111)
Q Consensus        11 ~~~~iavTsDG~tIVcwHP~~~fPYEhTKPIp~~d~~~~~~~lk~~~lk~~l~~~k~k~~-~~~~eELskmf~TTKHrWy   89 (111)
                      |+++||||+||||||||||+++||||||||||++++.++|+++|||++++.+++++...+ +++++|||+||||||||||
T Consensus        28 lve~vavt~nGRTIvawHP~~~~PYEhTkPip~~s~~~~savvkdq~lkt~~~ak~s~~pe~p~~~eL~~~f~TtKHrWy  107 (125)
T KOG4106|consen   28 LVEKVAVTANGRTIVAWHPPQHFPYEHTKPIPLGSLTKKSAVVKDQSLKTSAAAKASSIPEEPVNAELKDIFYTTKHRWY  107 (125)
T ss_pred             eeeeEEEecCCcEEEEecCCCCCCcccCCCCCCCccccchhhHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhhccccc
Confidence            677999999999999999999999999999999999999999999999999999877775 7788999999999999999


Q ss_pred             cchhhhhhhhcCCCCCCCCCCC
Q psy842           90 PVRKMRQKKRYFKPLIPDREYL  111 (111)
Q Consensus        90 Pr~q~~~rr~k~~p~p~DR~yl  111 (111)
                      ||+  |+.|+++++  +|+||+
T Consensus       108 pr~--R~~r~r~~~--~p~p~r  125 (125)
T KOG4106|consen  108 PRT--REERLRNVA--APIPRR  125 (125)
T ss_pred             cch--HHHHHhcCC--CCCCCC
Confidence            999  777777887  888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00