Psyllid ID: psy8432


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
MRRNACAQTNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFGPTEGVPTHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE
cccHHHHHHccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccHHHHHccccccccEEEEEEcccccccccccccHHHEEEcccccEEEEEEEccccEEEEEcccEEEEccccccccccccHHHHHHHccccccccccccHHHHccccccccccHHHHHccccHcccHHHHHHccccHHccHHHHHHccccccccHHHHHHHcccccccHHHHHHcccccccccHHHHcccccccccHHHHHHccccccccHHHHHHccccccccHHHHHHccccccccHHHHHHHcccccccHHHHHHcccccHccHHHHHHcccccHccHHHHHHcccccHccHHHHHHccHHHHccHHHHHHccHcccccHHHHHHcccHHHccHHHHHHccHcHHccHHHHHHccHccHccHHHHHHHcHcHHccHHHHHHccHHHHccHHHHHHccHHHHccHHHHHHHHHHHHccHHHHHHccHHHHccHHHHHHHcHcccccHHHHHHccHHcHccHHHHHHccHHHcccHHHHHHccHcccccHHHHHHccHccHccHHHHHHccHcccccHHHHHHccccccccHHHHHHccHcccccHHHHHHccccccccHHHHHHccccccccHHHHHHccccccccHHHHHcccccccccHHHHHHccccccccHHHHHHccccccccHHHHHHccccccccHHHHHHccccccccHHHHHHHcccHHccHHHHHHcccHHHccHHHHHHccHHHcccHHHHHHHcccHcccHHHHHHHcHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mrrnacaqtneagvmNYDIIAYGsvcrdvklhdlpiadltlKYGDLITEVVACNTATVIRVNKSDIYLHYqyecrrfspfhqrerrfifgptegvpthnyKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE
mrrnacaqtneagvmnYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFgptegvpthnYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHnykksahnyke
MRRNACAQTNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFGPTEGVPTHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE
**********EAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFGPTEGVPTHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNY******Y**L***************************
**********EAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKS****************************************************************************************************************************************************************************************************************************************************************************************************************************K***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
********TNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFGPTEGVPTHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE
**RNACA*TNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFGPTEGVPTHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRNACAQTNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYLHYQYECRRFSPFHQRERRFIFGPTEGVPTHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query788 2.2.26 [Sep-21-2011]
B9G9L9585 BURP domain-containing pr yes N/A 0.265 0.357 0.303 4e-14
>sp|B9G9L9|BURPH_ORYSJ BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1 Back     alignment and function desciption
 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 93/290 (32%), Gaps = 81/290 (27%)

Query: 119 HNYKKSAHNYKELAHNYKKSAHNYK--------ELAH-------NYKKSAHNYKELAHNY 163
            NYK S  +  E +H       NYK        EL H       NYK S     EL H  
Sbjct: 65  RNYKSSVSHVAERSHRVDDGQRNYKLSALPATNELPHRTDAGQRNYKSSVSPVAELPHRV 124

Query: 164 KKSAHNYK--------ELAH-------NYKKSAHNYKELAHNYKKSAHNYK--------E 200
                NYK        EL H       NYK S     EL+H       NYK        E
Sbjct: 125 DDGQRNYKLSALPATNELPHRTDAGQRNYKSSVSPMAELSHRVDDGQRNYKLSALPATNE 184

Query: 201 LAH-------NYKKSAHNYKELAHNYKKSAHNYK--------ELAH-------NYKKSAH 238
           L H       NYK S     EL H       NYK        EL H       NYK S  
Sbjct: 185 LPHHTDAGQRNYKSSVSPVAELPHRVDDGQRNYKLSALPATNELPHRTDAGQRNYKSSVS 244

Query: 239 NYKELAHNYKKSAHNYK--------ELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 290
              EL H       NYK        EL H       NYK       +  H   +   NYK
Sbjct: 245 PVAELPHRVDDGQRNYKLSALPATNELPHRIDAGQRNYKSSVSPMAELPHRADDGQRNYK 304

Query: 291 KSAHNYKELAH-------NYKKSAHNYKELAH------NYKKSAHNYKEL 327
            S     EL H       NYK S     EL H      NYK S     EL
Sbjct: 305 LSVSPAAELPHRVDDGQRNYKLSVLPATELVHYTDGQRNYKSSVLETPEL 354





Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query788
291237846875 PREDICTED: DNA-directed RNA polymerase I 0.871 0.785 0.291 5e-79
195404840 1461 GJ14616 [Drosophila virilis] gi|19415635 0.692 0.373 0.420 6e-77
449269272402 Putative proline-rich protein 21, partia 0.508 0.997 0.285 9e-66
156353910289 predicted protein [Nematostella vectensi 0.360 0.982 0.360 3e-47
291224128773 PREDICTED: predicted protein-like [Sacco 0.568 0.579 0.284 5e-41
71416355 908 hypothetical protein [Trypanosoma cruzi 0.756 0.656 0.105 5e-41
301629083469 PREDICTED: muscle M-line assembly protei 0.539 0.906 0.266 1e-40
156355196366 predicted protein [Nematostella vectensi 0.447 0.964 0.347 6e-40
71408257 1398 kinesin-like protein [Trypanosoma cruzi 0.614 0.346 0.214 2e-32
301625716277 PREDICTED: hypothetical protein LOC10049 0.293 0.833 0.259 8e-32
>gi|291237846|ref|XP_002738840.1| PREDICTED: DNA-directed RNA polymerase II largest subunit-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 202/694 (29%), Positives = 434/694 (62%), Gaps = 7/694 (1%)

Query: 101 KELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELA 160
           K +AH+ K  AH+ K +AH+ K  A++ K +AH+ K  A++ K +A + K  A + K +A
Sbjct: 25  KTIAHSPKTIAHSPKTIAHSSKTIAYSPKTIAHSSKTIAYSPKTIASSPKTIASSPKTIA 84

Query: 161 HNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 220
           H+ K  AH+ K +A++ K  A + K +AH+ K  AH+ K +A++ K  A++ K +A++ K
Sbjct: 85  HSPKTIAHSPKTIAYSPKTIASSPKTIAHSPKTIAHSPKTIAYSPKTIAYSPKTIAYSSK 144

Query: 221 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAH 280
             A++ K + ++ K   ++ K +A++ K   +++K + ++ K   +++K +A++ K  A+
Sbjct: 145 TIAYSPKTIVYSPKTKTYSPKTIAYSSKTKTYSFKTIVYSAKTKTYSFKTIAYSSKTIAY 204

Query: 281 NYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE 340
           + K +A++ K  A++ K +AH+ K  AH+ K +AH+ K  A++ K +A++ K  AH+ K 
Sbjct: 205 SSKTIAYSSKTIAYSPKTIAHSPKTIAHSPKTIAHSPKTIAYSPKTIAYSPKTIAHSPKT 264

Query: 341 LAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHN------Y 394
           +AH+ K  A++ K +A++ K  AH+ K +A++ K  A++ K +A++ K  A++       
Sbjct: 265 IAHSPKTIAYSPKTIAYSPKTIAHSPKTIAYSPKTIAYSSKTIAYSPKTIAYSSKTIAYS 324

Query: 395 KELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELA 454
           K +A++ K   +++K +A++ K  A + K +A++ K  A++ K +A++ K   ++ K +A
Sbjct: 325 KTIAYSPKTKTYSFKTIAYSAKTIACSSKTIAYSSKTIAYSSKTIAYSPKIIGYSPKTIA 384

Query: 455 HNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 514
           ++ K  A+++K +A++ K  A++ + +A++ K  A++ K +A++ K  A++ K +A+++K
Sbjct: 385 YSPKTIAYSHKTIAYSSKTIAYSSETIAYSSKTIAYSSKTIAYSPKTIAYSSKTIAYSFK 444

Query: 515 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAH 574
             A+++K +A++ K  A++ K +A++ K  A++ K +A++ K  A++ K +A++ K  A+
Sbjct: 445 TIAYSFKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAY 504

Query: 575 NYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE 634
           + K +A++ K  A++ K +A++ K  A++ K +A++ K  A++ K +A + K  A++ K 
Sbjct: 505 SSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSPKTIAYSPKTIACSPKTIAYSSKT 564

Query: 635 LAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHN 694
           +A++ K  A + K +A + K  A++ K +A++ K  A + K ++++ K  A++ K +A++
Sbjct: 565 IAYSSKTIACSSKTIACSPKTIAYSPKTIAYSSKTIACSSKTISYSSKTIAYSPKTIAYS 624

Query: 695 YKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKS 754
            K  A++ K +A++ K  A++ K +A++ K  A++ K +A++ K  A+++K +A++ K  
Sbjct: 625 PKTIAYSSKTIAYSSKTIAYSSKTIAYS-KTIAYSSKTIAYSPKTIAYSFKTIAYSSKTI 683

Query: 755 AHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE 788
           A++ K +A++ K  A++ K +A++ K  A++ K 
Sbjct: 684 AYSPKTIAYSSKTIAYSSKTIAYSPKTIAYSSKT 717




Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|195404840|ref|XP_002060482.1| GJ14616 [Drosophila virilis] gi|194156355|gb|EDW71539.1| GJ14616 [Drosophila virilis] Back     alignment and taxonomy information
>gi|449269272|gb|EMC80066.1| Putative proline-rich protein 21, partial [Columba livia] Back     alignment and taxonomy information
>gi|156353910|ref|XP_001623151.1| predicted protein [Nematostella vectensis] gi|156209818|gb|EDO31051.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|291224128|ref|XP_002732059.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|71416355|ref|XP_810212.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874711|gb|EAN88361.1| hypothetical protein, conserved [Trypanosoma cruzi] Back     alignment and taxonomy information
>gi|301629083|ref|XP_002943678.1| PREDICTED: muscle M-line assembly protein unc-89-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|156355196|ref|XP_001623558.1| predicted protein [Nematostella vectensis] gi|156210271|gb|EDO31458.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|71408257|ref|XP_806544.1| kinesin-like protein [Trypanosoma cruzi strain CL Brener] gi|70870320|gb|EAN84693.1| kinesin-like protein, putative [Trypanosoma cruzi] Back     alignment and taxonomy information
>gi|301625716|ref|XP_002942048.1| PREDICTED: hypothetical protein LOC100491747 [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query788
GENEDB_PFALCIPARUM|PFD1175w 1222 PFD1175w "Plasmodium falciparu 0.724 0.467 0.311 8.2e-49
UNIPROTKB|Q8IFL9 1222 trophozoite antigen R45 "Serin 0.724 0.467 0.311 8.2e-49
UNIPROTKB|Q08696 1391 mst101(2) "Axoneme-associated 0.810 0.459 0.340 1e-37
WB|WBGene00012664735 Y39B6A.1 [Caenorhabditis elega 0.823 0.882 0.198 1.4e-27
GENEDB_PFALCIPARUM|PF11_0185 1471 PF11_0185 "hypothetical protei 0.824 0.441 0.239 1.4e-25
UNIPROTKB|Q8III9 1471 PF11_0185 "Conserved Plasmodiu 0.824 0.441 0.239 1.4e-25
GENEDB_PFALCIPARUM|PFL1670c 1130 PFL1670c "hypothetical protein 0.611 0.426 0.281 1.3e-23
UNIPROTKB|Q8I576 1130 PFL1670c "Conserved Plasmodium 0.611 0.426 0.281 1.3e-23
UNIPROTKB|P11414467 POLR2A "DNA-directed RNA polym 0.459 0.775 0.163 7e-23
UNIPROTKB|I3LQ53543 I3LQ53 "Uncharacterized protei 0.459 0.666 0.163 1.5e-22
GENEDB_PFALCIPARUM|PFD1175w PFD1175w "Plasmodium falciparum trophozoite antigen r45-like protein" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 537 (194.1 bits), Expect = 8.2e-49, P = 8.2e-49
 Identities = 212/680 (31%), Positives = 345/680 (50%)

Query:   107 YKKSAHNYKELAHNYKKSAHNYKELAH---NYKKSAHNYKELAHNYKKSAHNYKELAHNY 163
             Y+    N  E   N  ++ H  K+  H   +  KS  N+K  +++  KS  N+K    N+
Sbjct:   373 YEPECANCNEEDKNMSENNHK-KDSKHKGDSNHKSDSNHKSDSNH--KSDSNHKS-GSNH 428

Query:   164 KKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAH---NYK 220
             K    N+K    N+K  +++  +  H    S HN+K   +N+K  + +  + +H   +  
Sbjct:   429 KSDC-NHKS-GSNHKSDSNHQSDCNH---MSDHNHKS-DNNHKSDSSHKSDSSHKSDSSH 482

Query:   221 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAH----NYK 276
             KS  N+K  + N  KS  ++K    N+K S HN+K  + N+K  +++  E  H    N+K
Sbjct:   483 KSGSNHK--SDNNHKSDSSHKS-GSNHK-SDHNHKSDS-NHKSDSNHKNESNHKNESNHK 537

Query:   277 KSAHNYKELAH----NYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 332
               +++  E  H    N+K  +++  +  H    S HN+K  + N  KS HN+    HN+K
Sbjct:   538 NESNHKNESNHKNESNHKNDSNHKSDSNH---MSDHNHK--SDNNHKSDHNHMS-DHNHK 591

Query:   333 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAH 392
              S +N+K  + N   S HN+K  + N  KS +N+K  + N  KS HN+    HN+K S +
Sbjct:   592 -SDNNHK--SDNNHMSDHNHK--SDNNHKSDNNHK--SDNNHKSDHNHMS-DHNHK-SDN 642

Query:   393 NYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK-----KSA 447
             N+K   HN+K  +++  +  HN+  S HN+K   HN+K S HN+K   +N+K     KS 
Sbjct:   643 NHKS-DHNHKSDSNHMSD--HNHM-SDHNHKS-DHNHK-SDHNHKS-DNNHKSDSNHKSD 695

Query:   448 HNYKELAHNYKK-----SAHNYKELAHNYKKSAHNYKELAHNYK-----KSAHNYKELAH 497
              N+K   HN+K      S HN+    HN+K S HN+K   +N+K     KS  N+K   H
Sbjct:   696 SNHKS-DHNHKSDSNHMSDHNHMS-DHNHK-SDHNHKS-DNNHKSDSNHKSDSNHKS-DH 750

Query:   498 NYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKK 557
             N+K  +++  +  HN+  S HN+    HN+K S HN+K  + N  KS  N+K  +++  K
Sbjct:   751 NHKSDSNHMSD--HNHM-SDHNHMS-DHNHK-SDHNHK--SDNNHKSDSNHKSDSNH--K 801

Query:   558 SAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHN 617
             S  N+K   HN+K    ++K ++ N  KS +N+K   HN+K S +N+K   HN+K  +++
Sbjct:   802 SDSNHKS-DHNHKS---DHKHMSDNNHKSDNNHKS-DHNHK-SDNNHKS-DHNHKSDSNH 854

Query:   618 YKELAH----NYK-----KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 668
               +  H    N+K     KS +N+K   HN+   +++  +  HN+K S HN+K   HN+K
Sbjct:   855 KSDSNHKSDSNHKSDSNHKSDNNHKS-DHNHNSDSNHMSD--HNHK-SDHNHKS-DHNHK 909

Query:   669 KSAHNYKELAHNYKKSAHNYK---ELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKK 725
              S +N+K  + N  KS HN+K   +  +N  K   N      +   + H   EL  +Y  
Sbjct:   910 -SDNNHK--SDNNHKSDHNHKSDHKKNNNNNKDNKNDDNDDSDASDAVHEDIELLESYS- 965

Query:   726 SAHNYKE-LAHNYKKSAHNY 744
               + + E L     K+   Y
Sbjct:   966 DLNKFNEMLTEQLNKNKDGY 985


GO:0020011 "apicoplast" evidence=RCA
UNIPROTKB|Q8IFL9 trophozoite antigen R45 "Serine/Threonine protein kinase, FIKK family" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q08696 mst101(2) "Axoneme-associated protein mst101(2)" [Drosophila hydei (taxid:7224)] Back     alignment and assigned GO terms
WB|WBGene00012664 Y39B6A.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0185 PF11_0185 "hypothetical protein" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8III9 PF11_0185 "Conserved Plasmodium protein" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL1670c PFL1670c "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I576 PFL1670c "Conserved Plasmodium protein" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|P11414 POLR2A "DNA-directed RNA polymerase II subunit RPB1" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQ53 I3LQ53 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query788
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
 Score = 44.4 bits (104), Expect = 3e-04
 Identities = 128/472 (27%), Positives = 178/472 (37%), Gaps = 12/472 (2%)

Query: 108  KKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSA 167
             K A   K+ A   KK A   K+ A   KK+A   K  A      A   +E A   +K  
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373

Query: 168  HNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYK 227
               K+ A   KK A   K+ A   KK A   K+ A   KK+A   K+     KK+    K
Sbjct: 1374 EEAKKKADAAKKKAEEKKK-ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432

Query: 228  ELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAH 287
              A   KK A   K+     KK+    K  A   KK A   K+     KK+    K  A 
Sbjct: 1433 --ADEAKKKAEEAKKADEAKKKAEEAKK--AEEAKKKAEEAKKADEAKKKAEEAKK--AD 1486

Query: 288  NYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKK 347
              KK A   K+ A   KK+A   K+ A   KK+    K       + A    E     +K
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545

Query: 348  SAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHN 407
               +  + A   KK+    K  A   KK+  +        +++    +       K    
Sbjct: 1546 KKADELKKAEELKKAEEKKK--AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603

Query: 408  YKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKEL 467
             K++     K A   K  A   KK+    K++    KK A   K+ A   KK+    K  
Sbjct: 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK-AEELKKAEEENKIK 1662

Query: 468  AHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNY 527
            A    K A   K+ A   KK+  + K+ A   KK A   K+     KK A   K+ A   
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK-AEEL 1721

Query: 528  KKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKEL 579
            KK+    K  A   KK A   K+ A   KK     K++AH  K+     +E+
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773


Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 788
KOG0260|consensus1605 100.0
KOG0260|consensus1605 100.0
KOG1999|consensus1024 83.08
>KOG0260|consensus Back     alignment and domain information
Probab=100.00  E-value=8.7e-56  Score=494.59  Aligned_cols=147  Identities=15%  Similarity=0.415  Sum_probs=74.8

Q ss_pred             CcccCCCCccCCCCccccCCccccCCCCCcCCCCCCCCCCCccccCCCccccCCCCCccccCCCCCCCCCCccCCCcccc
Q psy8432         268 YKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKK  347 (788)
Q Consensus       268 YSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPaYSPTSPsYSPTSPaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSP  347 (788)
                      |+|+||.|+|+||+|+|+||.|+|+||.||||||.||||||+||||||.|+||||+|||+||+|||+||+|||+||+|||
T Consensus      1459 ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysp 1538 (1605)
T KOG0260|consen 1459 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1538 (1605)
T ss_pred             CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            33333334444444444444444444444444444444444444444444444444444555555555555555555555


Q ss_pred             CCCccccccCccccCCCCCcccccccccccCCCcccccccccCCCCCcccCcccccCCCCcccccccc
Q psy8432         348 SAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNY  415 (788)
Q Consensus       348 TSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSPtSPsYsPSsPsYSPlSPsYSPtSPsYSPtSP~Y  415 (788)
                      |||+||||||+||||||+|+||||.|+|++|+||||||+|+ ++|+|+|++|+|+|++|.|+|++|+|
T Consensus      1539 tspsysptspsysptspsysptsp~ysptspsysptspsys-~~~~ysp~sp~ysptsp~ysp~spsy 1605 (1605)
T KOG0260|consen 1539 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-TSPSYSPTSPSYSPTSPSYSPTSPSY 1605 (1605)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc-CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            55555555555555555555555555555555555555555 55555555555555555555555554



>KOG0260|consensus Back     alignment and domain information
>KOG1999|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query788
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 100.0
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 100.0
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 100.0
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 100.0
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Back     alignment and structure
Probab=100.00  E-value=4.4e-50  Score=466.46  Aligned_cols=188  Identities=14%  Similarity=0.381  Sum_probs=0.0

Q ss_pred             cCCCCcccccccccccCcchhhhcccccccCCCCcccCCCCccCCCCccccCCccccCCCCCcCCCCCCCCCCCccccCC
Q psy8432         235 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELA  314 (788)
Q Consensus       235 ~sS~nY~p~SpnYs~tSpnY~~ls~nY~~ss~aYSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPaYSPTSPsYSPTS  314 (788)
                      ++|++|+|+||+|+|++|.|.+.++.|++.+|.|+|+||+|+|+||.|+|+||.|+|+||.|+|+||.|+|+||+|+|+|
T Consensus      1530 ~~~~~~~~~sP~~~~~~~~~s~~s~~~s~~~p~~~~~sp~~~~~sp~~sp~sp~~sptsp~~sp~s~~~~ptsp~ysp~s 1609 (1733)
T 1twf_A         1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1609 (1733)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            33333333334343333333333333444444444444444444444444444444444444444444444444444444


Q ss_pred             CccccCCCCCccccCCCCCCCCCCccCCCccccCCCccccccCccccCCCCCcccccccccccCCCcccccccccCCCCC
Q psy8432         315 HNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNY  394 (788)
Q Consensus       315 PaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSPTSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSPtSPsYsPSsPsY  394 (788)
                      |.|+|+||+|+|+||.|+|+||+|+|+||.|||+||.|||+||+|+|+||.|+|+||.|+|++|.|+|+||.|+|++|.|
T Consensus      1610 p~~sptsp~~sptsp~ysP~sp~~sptsp~ysp~sp~~sp~sp~y~p~sp~~sp~sp~~~p~sp~y~p~sp~y~p~sp~~ 1689 (1733)
T 1twf_A         1610 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689 (1733)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cccCcccccCCCCccccccccccCcccc
Q psy8432         395 KELAHNYKKSAHNYKELAHNYKKSAHNY  422 (788)
Q Consensus       395 SPlSPsYSPtSPsYSPtSP~YspSSpnY  422 (788)
                      +|+||+|+|++|+|+|++|+|+|++|.|
T Consensus      1690 sp~sp~~~p~~p~~~p~sp~~~p~~p~~ 1717 (1733)
T 1twf_A         1690 SPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717 (1733)
T ss_dssp             ----------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            4444444444444444444444444444



>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00