Psyllid ID: psy8450

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MIVLYVLSFQIEDDGKHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKNVIQ
cEEEEEccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccEEEEccHHHccccHHHHHHHcccccccccccccHHHHHHHHHHccHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEcccEEEEcccccEEEEEEEccccccccccccccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccc
ccEEEEccccccccccccHHHHHHHHccccccccccccccccccccccccccccHccHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHcccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHcccccHcHcccEEEEEEEcccEEEccccccHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccEEEEEEEEEccccccccEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHEEEEEcccccEEEEEEcccEEEEcccccEEEEEccccHEEEEEcccccccccEEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHccccc
MIVLYVLSFQIEDDGKHSLLQFAMHHFRQFEnlktatgelttgtghkksssdwtwREQLDLvkftcvpisepllklepplAEIAVECFECIMRfmgdlpttpdltevKCVYTILMhchtheplrdEVYCQLMKQTtsnktescQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYdkrrafhgTASVCLQNLRKTlryggrknvpsvEEVTAVsagrnskrqlyrlpggsetvintkstTVVEDICIEMCQLINVNNDLEMEEFSLYCIvegdaftmplakeEYILDVTTELHKNQQVFYLIFCRSvwyfplrldCQLYVQVLFNQIAPDYLEGLLlvlpneqipqdIVYDVAKLAALLHRAadmshppamketkfllpkpaltqrdikpaqWVQMVQSHWTQTAPLHSIQAKAQLLEILskwplfgssffaiKRNGDQQILALNKHGVHFLNLLThetissvpygdvistrkvraesgTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKNVIQ
MIVLYVLSFQIEDDGKHSLLQFAMHHFRQFENLKtatgelttgtghkksssdwtWREQLDLVKFTCVPISepllklepplAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTsnktescqrGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRktlryggrknvpsveevtavsagrnskrqlyrlpggsetvintkSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHEtissvpygdvistRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRqymsldrqknviq
MIVLYVLSFQIEDDGKHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISepllklepplaeIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKNVIQ
*IVLYVLSFQIEDDGKHSLLQFAMHHFRQFENLKTATGELTT********SDWTWREQLDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNV******************LYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA************FLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYM**********
*IVLY***********HSLLQFAMHHFRQ******************************DLVKFTCVP***********LAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTL*******VPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHR*************KFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMS**RQ*****
MIVLYVLSFQIEDDGKHSLLQFAMHHFRQFENLKTATGEL*************TWREQLDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQ*********QRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKNVIQ
MIVLYVLSFQIEDDGKHSLLQFAMHHFRQF************************WREQLDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQK****
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MIVLYVLSFQIEDDGKHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQKNVIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q9QZZ43511 Unconventional myosin-XV no N/A 0.921 0.137 0.372 2e-85
Q9UKN73530 Unconventional myosin-XV yes N/A 0.923 0.137 0.365 3e-85
Q29P712168 Myosin-VIIa OS=Drosophila no N/A 0.878 0.212 0.269 2e-35
Q9V3Z62167 Myosin-VIIa OS=Drosophila no N/A 0.885 0.214 0.267 7e-34
Q17LW02163 Myosin-VIIa OS=Aedes aegy N/A N/A 0.870 0.211 0.269 3e-33
P914432098 Unconventional myosin hea no N/A 0.887 0.222 0.250 4e-32
Q622K82099 Unconventional myosin hea N/A N/A 0.883 0.221 0.243 2e-30
P974792215 Unconventional myosin-VII no N/A 0.815 0.193 0.242 4e-30
Q134022215 Unconventional myosin-VII no N/A 0.780 0.185 0.242 1e-29
Q6PIF62116 Unconventional myosin-VII no N/A 0.859 0.213 0.246 2e-28
>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2 Back     alignment and function desciption
 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/505 (37%), Positives = 290/505 (57%), Gaps = 21/505 (4%)

Query: 18   SLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLLKL- 76
            ++L+FA  +FR          +L       KS  D   +   D++ FT VPI E L++L 
Sbjct: 2992 TMLEFAQKYFRDPRRRPRDGLKL-------KSKEDRESKTLEDVLCFTKVPIQESLIELS 3044

Query: 77   EPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTT 136
            +  L ++AV+ F  +MRFMGD P     +E+  + T+L  C  HE +RDE YCQ++KQ T
Sbjct: 3045 DSNLNKMAVDMFVAVMRFMGDAPLK-GQSELDVLCTLLKLCGDHEVMRDECYCQIVKQIT 3103

Query: 137  SN---KTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNL 193
             N   K +SCQRGWRLL I+AAY++CS+   P+L+++L+  ++     F G A  C QNL
Sbjct: 3104 DNSSPKQDSCQRGWRLLYIMAAYYSCSEVFYPYLIRFLQHVSWTPGLPFQGIAKACEQNL 3163

Query: 194  RKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQL 253
            +KTLR+GGR   PS  E+ A+ AGR+SKRQL+ LPGG E  +  K+ TV  D+   +C  
Sbjct: 3164 QKTLRFGGRLEFPSNMELRAMLAGRSSKRQLFLLPGGLERHLKIKTCTVALDVIEGLCTE 3223

Query: 254  INVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFPL 313
            + +      +E+ ++ +        PL+   YILDV +E+ +    + L F R +W  PL
Sbjct: 3224 MALTRPEAFDEYVIFVVTNRGQHVCPLSCRAYILDVASEMEQVDGGYTLWFRRVLWDQPL 3283

Query: 314  RLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMK 373
            + + +LYV + +NQ+ PDYL+GL   +P  Q  +  +  V+KLA+L HRA D  + P+++
Sbjct: 3284 KFENELYVTMHYNQVLPDYLKGLFSSVPARQPTEQQLQQVSKLASLQHRAKDHFYLPSVR 3343

Query: 374  ETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFA 433
            E +  +  PA          W+ +V  H  QT  L   QA+AQ L +LS +PLFGSSFF 
Sbjct: 3344 EVQEYI--PAQLYHTTAGDTWLNLVSQHRQQTQALSPHQARAQFLGLLSAFPLFGSSFFF 3401

Query: 434  IKRNGD-----QQILALNKHGVHFLNLLTHETISSVPYGDVIS--TRKVRAESGTLYLEM 486
            I+   +       ILA+N +G++FL+  THE I  +P  ++ S  T++  A S   Y+E+
Sbjct: 3402 IQSCSNVLVPAPCILAVNHNGLNFLSTKTHELIVKIPLKEIQSTWTQQPTANSSYPYVEI 3461

Query: 487  KCGNLFQQRVARIQTDQAHEIARLI 511
              G++  QR  ++Q +Q  E+ R++
Sbjct: 3462 SLGDVAAQRTMQLQLEQGLELCRVV 3486
Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). Required for the arrangement of stereocilia in mature hair bundles.
Mus musculus (taxid: 10090)
>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2 Back     alignment and function description
>sp|Q29P71|MYO7A_DROPS Myosin-VIIa OS=Drosophila pseudoobscura pseudoobscura GN=ck PE=3 SV=1 Back     alignment and function description
>sp|Q9V3Z6|MYO7A_DROME Myosin-VIIa OS=Drosophila melanogaster GN=ck PE=1 SV=1 Back     alignment and function description
>sp|Q17LW0|MYO7A_AEDAE Myosin-VIIa OS=Aedes aegypti GN=ck PE=3 SV=1 Back     alignment and function description
>sp|P91443|HUM6_CAEEL Unconventional myosin heavy chain 6 OS=Caenorhabditis elegans GN=hum-6 PE=1 SV=1 Back     alignment and function description
>sp|Q622K8|HUM6_CAEBR Unconventional myosin heavy chain 6 OS=Caenorhabditis briggsae GN=hum-6 PE=3 SV=1 Back     alignment and function description
>sp|P97479|MYO7A_MOUSE Unconventional myosin-VIIa OS=Mus musculus GN=Myo7a PE=1 SV=2 Back     alignment and function description
>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2 Back     alignment and function description
>sp|Q6PIF6|MYO7B_HUMAN Unconventional myosin-VIIb OS=Homo sapiens GN=MYO7B PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
328712705 2782 PREDICTED: myosin-XV isoform 2 [Acyrthos 0.965 0.182 0.775 0.0
328712707 2918 PREDICTED: myosin-XV isoform 1 [Acyrthos 0.965 0.173 0.775 0.0
242017795 2941 myosin XV, putative [Pediculus humanus c 0.963 0.172 0.687 0.0
307208120 4137 Myosin-XV [Harpegnathos saltator] 0.977 0.124 0.650 0.0
328779437 3642 PREDICTED: hypothetical protein LOC40844 0.986 0.142 0.644 0.0
350416998 3668 PREDICTED: LOW QUALITY PROTEIN: myosin-X 0.986 0.141 0.641 0.0
332018715 2920 Myosin-XV [Acromyrmex echinatior] 0.961 0.172 0.664 0.0
322784012 677 hypothetical protein SINV_03291 [Solenop 0.977 0.757 0.65 0.0
380022414 716 PREDICTED: unconventional myosin-XV-like 0.977 0.716 0.648 0.0
345482651 3625 PREDICTED: LOW QUALITY PROTEIN: hypothet 0.967 0.140 0.650 0.0
>gi|328712705|ref|XP_003244885.1| PREDICTED: myosin-XV isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/516 (77%), Positives = 457/516 (88%), Gaps = 9/516 (1%)

Query: 13   DDGKHSLLQFAMHHFR----QFENLKTATGELTTG----TGHKKSSSDWTWREQLDLVKF 64
            DDGKHSLLQFAM++FR    +F+ LK+A GE+          KK S DWTW+EQL++VK+
Sbjct: 2261 DDGKHSLLQFAMYNFRHSSEKFDMLKSANGEINGSLKVIQNSKKKSDDWTWKEQLEMVKY 2320

Query: 65   TCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLR 124
            T VPI E LLKL+P L  +A+ECFEC+MR+MGDLPTTP+ TEVKCVYTILMHCH  E LR
Sbjct: 2321 TNVPIPESLLKLDPELDALAIECFECVMRYMGDLPTTPEFTEVKCVYTILMHCHKFESLR 2380

Query: 125  DEVYCQLMKQTTSNKTESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHG 184
            DEVYCQLMKQTT+NKTE+CQRGWRLLSIVAAYFTCS+ LRPFLLKYLETAAYDKRRAFHG
Sbjct: 2381 DEVYCQLMKQTTNNKTETCQRGWRLLSIVAAYFTCSENLRPFLLKYLETAAYDKRRAFHG 2440

Query: 185  TASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVE 244
            TA+VCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQ+YRLPGGSETV+NTKSTTVV 
Sbjct: 2441 TANVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQMYRLPGGSETVVNTKSTTVVA 2500

Query: 245  DICIEMCQLINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIF 304
            D+   MC LINVN+ LEMEEFSLYCIVEGDAFTMPLA +EYILDVTTELHKNQQVFYLIF
Sbjct: 2501 DVIAGMCSLINVNDPLEMEEFSLYCIVEGDAFTMPLAADEYILDVTTELHKNQQVFYLIF 2560

Query: 305  CRSVWYFPLRLDCQLYVQVLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAA 364
            CRSVWYFPLRLD QLYVQVLFNQIAPDYLEGLLLVLP  Q+PQD++Y+V ++AALLHRAA
Sbjct: 2561 CRSVWYFPLRLDSQLYVQVLFNQIAPDYLEGLLLVLPFGQLPQDLLYEVCRIAALLHRAA 2620

Query: 365  DMSHPPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKW 424
            DM  PP +KETKFLLPKPAL Q ++ P Q VQMVQ++W +   LHS++AKAQ LE+LSKW
Sbjct: 2621 DMVQPPTLKETKFLLPKPALMQNEVNPQQLVQMVQNNWPEIETLHSVEAKAQFLELLSKW 2680

Query: 425  PLFGSSFFAIKRNGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRA-ESGTLY 483
            PLFGSSFFA+KR+GDQQILALN+ GVHFL+++TH+T+S+VP+ +VISTRKVRA E  TLY
Sbjct: 2681 PLFGSSFFAVKRSGDQQILALNRTGVHFLHIVTHKTLSTVPFSEVISTRKVRAGEGATLY 2740

Query: 484  LEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDR 519
            LE+KCGNLFQQRVAR+QTDQAHEIARL+RQY+++ R
Sbjct: 2741 LELKCGNLFQQRVARLQTDQAHEIARLVRQYITMHR 2776

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328712707|ref|XP_001944282.2| PREDICTED: myosin-XV isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242017795|ref|XP_002429372.1| myosin XV, putative [Pediculus humanus corporis] gi|212514281|gb|EEB16634.1| myosin XV, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307208120|gb|EFN85624.1| Myosin-XV [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328779437|ref|XP_391992.4| PREDICTED: hypothetical protein LOC408444 [Apis mellifera] Back     alignment and taxonomy information
>gi|350416998|ref|XP_003491207.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XV-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332018715|gb|EGI59287.1| Myosin-XV [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322784012|gb|EFZ11152.1| hypothetical protein SINV_03291 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|380022414|ref|XP_003695041.1| PREDICTED: unconventional myosin-XV-like [Apis florea] Back     alignment and taxonomy information
>gi|345482651|ref|XP_001608000.2| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC100124138 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
FB|FBgn02637053145 Myo10A "Myosin 10A" [Drosophil 0.786 0.131 0.612 1.9e-133
ZFIN|ZDB-GENE-080425-24115 myo15aa "myosin XVAa" [Danio r 0.946 0.120 0.377 8.2e-82
UNIPROTKB|E2RNX43518 MYO15A "Uncharacterized protei 0.931 0.138 0.356 6.4e-77
UNIPROTKB|J9NWG63518 MYO15A "Uncharacterized protei 0.931 0.138 0.356 6.4e-77
MGI|MGI:12618113511 Myo15 "myosin XV" [Mus musculu 0.878 0.131 0.374 8.2e-77
UNIPROTKB|F1M1863487 Myo15 "Protein Myo15" [Rattus 0.878 0.132 0.372 1e-76
RGD|15618733505 Myo15a "myosin XVA" [Rattus no 0.878 0.131 0.372 1e-76
UNIPROTKB|B4DFC7797 MYO15A "Unconventional myosin- 0.904 0.595 0.366 2.4e-76
ZFIN|ZDB-GENE-090312-1492375 myo15ab "myosin XVAb" [Danio r 0.937 0.207 0.358 4e-76
UNIPROTKB|Q9UKN73530 MYO15A "Unconventional myosin- 0.92 0.136 0.364 7.4e-76
FB|FBgn0263705 Myo10A "Myosin 10A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1323 (470.8 bits), Expect = 1.9e-133, P = 1.9e-133
 Identities = 262/428 (61%), Positives = 325/428 (75%)

Query:    16 KHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISXXXXX 75
             K+SLLQFAM HFR  + L+ A         H++  S    R   +LVK+    I      
Sbjct:  2618 KYSLLQFAMQHFRN-DQLRDADRH------HERHQSAAN-RSYAELVKWQGHAIRLPLLR 2669

Query:    76 XXXXXXXIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQT 135
                    +A+ECF+CI+R+ GD+P  PDLTEVKCVYT+LMHCH +  LRDEVYCQLMKQT
Sbjct:  2670 LPNDLAPLALECFDCILRYCGDIPLDPDLTEVKCVYTVLMHCHKYLALRDEVYCQLMKQT 2729

Query:   136 TSNKT---ESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQN 192
             T+N++   +S QR WRLLSI+AAYF CSD LRP+L+++L +AA D+RR+ HGTA+VCL N
Sbjct:  2730 TANRSPCPDSSQRAWRLLSILAAYFGCSDALRPYLMEHLTSAASDRRRSCHGTAAVCLTN 2789

Query:   193 LRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQ 252
             LRKT R GGRKNVPSVEEVTAVSAGR+++RQ+YRLPGG+E V+NT+ +TVV D+  E+C 
Sbjct:  2790 LRKTARCGGRKNVPSVEEVTAVSAGRSARRQIYRLPGGAERVVNTRCSTVVADVIAELCA 2849

Query:   253 LINVNNDLEMEEFSLYCIVEGDAFTMPLAKEEYILDVTTELHKNQQVFYLIFCRSVWYFP 312
             L+ V ++ E +EFSLYCIV+GDAFTMPLA +EYILDVTTEL K+ Q FYLIFCRSVW+F 
Sbjct:  2850 LLGVESEAEQQEFSLYCIVQGDAFTMPLAADEYILDVTTELLKSGQPFYLIFCRSVWHFA 2909

Query:   313 LRLD---CQLYVQVLFNQIAPDYLEGLLLVLPNEQIP-QDIVYDVAKLAALLHRAADMSH 368
             L+ +     LYV+VLFNQ+APDYLEGLLL LP   +P  ++V D+A++AALLHRAAD+SH
Sbjct:  2910 LKREPAPMPLYVEVLFNQVAPDYLEGLLLELPGNGVPVPEMVRDMARIAALLHRAADLSH 2969

Query:   369 PPAMKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQTAPLHSIQAKAQLLEILSKWPLFG 428
              PAMKE KFLLPKPAL  R+I+PAQWV +VQS W Q A L   Q KAQ L +L+ WPLFG
Sbjct:  2970 VPAMKEIKFLLPKPALGIREIRPAQWVGLVQSAWPQVANLSPGQVKAQFLNVLATWPLFG 3029

Query:   429 SSFFAIKR 436
             SSFFA+KR
Sbjct:  3030 SSFFAVKR 3037
GO:0016461 "unconventional myosin complex" evidence=ISS;NAS
GO:0016459 "myosin complex" evidence=ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0030175 "filopodium" evidence=IDA
GO:0043025 "neuronal cell body" evidence=IDA
GO:0046847 "filopodium assembly" evidence=IMP
GO:0007391 "dorsal closure" evidence=IMP
GO:0006886 "intracellular protein transport" evidence=IMP
ZFIN|ZDB-GENE-080425-2 myo15aa "myosin XVAa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNX4 MYO15A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWG6 MYO15A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1261811 Myo15 "myosin XV" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1M186 Myo15 "Protein Myo15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1561873 Myo15a "myosin XVA" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B4DFC7 MYO15A "Unconventional myosin-XV" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090312-149 myo15ab "myosin XVAb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKN7 MYO15A "Unconventional myosin-XV" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
cd13201131 cd13201, FERM_C_MyoXV, Myosin XV (MyoXV/Myo15) FER 2e-52
smart00139152 smart00139, MyTH4, Domain in Myosin and Kinesin Ta 1e-38
pfam00784106 pfam00784, MyTH4, MyTH4 domain 6e-24
cd13199176 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) 1e-20
smart00295201 smart00295, B41, Band 4 7e-12
cd13204113 cd13204, FERM_C2_myosin_like, Myosin-like FERM dom 3e-06
cd13200189 cd13200, FERM_C_KCBP, kinesin-like calmodulin bind 1e-05
cd13203117 cd13203, FERM_C1_myosin_like, Myosin-like FERM dom 2e-05
pfam00373113 pfam00373, FERM_M, FERM central domain 3e-05
>gnl|CDD|241355 cd13201, FERM_C_MyoXV, Myosin XV (MyoXV/Myo15) FERM domain C-lobe Back     alignment and domain information 
 Score =  173 bits (442), Expect = 2e-52
 Identities = 64/129 (49%), Positives = 88/129 (68%), Gaps = 6/129 (4%)

Query: 398 VQSHWTQTAPLHSIQAKAQLLEILSKWPLFGSSFFAIKR-----NGDQQILALNKHGVHF 452
           VQ H  Q  PL   QA+AQ LEILSK PLFGS+FF ++R          +LA+N+ G+HF
Sbjct: 1   VQQHLQQVQPLSPHQARAQFLEILSKLPLFGSNFFYVQRVSDPRIPGPCLLAVNREGLHF 60

Query: 453 LNLLTHETISSVPYGDVISTRKVRA-ESGTLYLEMKCGNLFQQRVARIQTDQAHEIARLI 511
           L+  THET+ ++P  ++ STRK+R  E GT +L++K GNL QQ+  R++TDQAHEI+RLI
Sbjct: 61  LDPNTHETLLTIPLKEIQSTRKLRPLEDGTPFLDIKYGNLMQQKTTRLETDQAHEISRLI 120

Query: 512 RQYMSLDRQ 520
            QY+    +
Sbjct: 121 AQYIEEQSE 129

MyoXV, a MyTH-FERM myosin, are actin-based motor proteins essential for a variety of biological processes in actin cytoskeleton function. Specifically MyoXV functions in the actin organization in hair cells of the organ of Corti. Mutations in Human MyoXVa causes non-syndromic deafness, DFNB3 and the mouse shaker-2 mutation. MyoXV consists of a N-terminal motor/head region, a neck made of 1-3 IQ motifs, and a tail that consists of either a myosin tail homology 4 (MyTH4) domains, followed by an SH3 domain, and a MyTH-FERM domains as in rat Myo15 or two MyTH-FERM domains separated by a SH3 domain as in human Myo15A. The MyTH-FERM domains are thought to mediate dimerization and binding to other proteins or cargo. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 131
>gnl|CDD|214535 smart00139, MyTH4, Domain in Myosin and Kinesin Tails Back     alignment and domain information
>gnl|CDD|216118 pfam00784, MyTH4, MyTH4 domain Back     alignment and domain information
>gnl|CDD|241353 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) FERM domain C-lobe, repeat 2 Back     alignment and domain information
>gnl|CDD|214604 smart00295, B41, Band 4 Back     alignment and domain information
>gnl|CDD|241358 cd13204, FERM_C2_myosin_like, Myosin-like FERM domain C-lobe, repeat 2 Back     alignment and domain information
>gnl|CDD|241354 cd13200, FERM_C_KCBP, kinesin-like calmodulin binding protein FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241357 cd13203, FERM_C1_myosin_like, Myosin-like FERM domain C-lobe, repeat 1 Back     alignment and domain information
>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
smart00139144 MyTH4 Domain in Myosin and Kinesin Tails. Domain p 100.0
KOG0248|consensus936 100.0
PF00784114 MyTH4: MyTH4 domain; InterPro: IPR000857 The micro 99.98
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 99.96
KOG3530|consensus 616 99.92
KOG4261|consensus 1003 99.84
KOG3552|consensus 1298 99.83
KOG3529|consensus 596 99.76
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 99.75
KOG0792|consensus 1144 99.72
KOG3527|consensus 975 99.61
KOG4257|consensus 974 99.5
KOG3784|consensus407 99.07
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 99.03
cd0178785 GRB7_RA RA (RAS-associated like) domain of Grb7. G 98.94
KOG3531|consensus 1036 98.55
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 98.48
KOG3727|consensus664 98.47
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 98.32
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 98.23
cd0083692 FERM_C FERM_C domain. The FERM_C domain is the thi 98.23
cd0177687 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin 97.78
KOG4229|consensus 1062 97.62
cd0177787 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin 97.54
PF02174100 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 97.4
cd0177896 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s 97.35
KOG3751|consensus 622 97.22
cd01203104 DOK_PTB Downstream of tyrosine kinase (DOK) Phosph 97.17
cd00824104 PTBI IRS-like phosphotyrosine-binding domain. IRS- 97.07
KOG4371|consensus 1332 96.98
cd0178487 rasfadin_RA Ubiquitin-like domain of Rasfadin. ras 96.92
PF0938090 FERM_C: FERM C-terminal PH-like domain; InterPro: 96.77
smart0031098 PTBI Phosphotyrosine-binding domain (IRS1-like). 96.71
cd0176072 RBD Ubiquitin-like domain of RBD-like S/T kinases. 96.6
cd01781100 AF6_RA_repeat2 Ubiquitin domain of AT-6, second re 96.5
cd0178397 DAGK_delta_RA Ubiquitin-like domain of Diacylgylce 96.05
cd01216123 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, ph 95.54
cd0181877 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo 95.5
PF14847105 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 95.48
PF10480200 ICAP-1_inte_bdg: Beta-1 integrin binding protein; 95.47
cd01202102 FRS2 Fibroblast growth factor receptor substrate 2 95.29
PF00640140 PID: Phosphotyrosine interaction domain (PTB/PID) 95.25
cd01267132 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, 95.02
cd01782112 AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep 94.9
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 94.79
smart0045570 RBD Raf-like Ras-binding domain. 94.69
cd0181773 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS 94.44
cd00934123 PTB Phosphotyrosine-binding (PTB) domain. Phosphot 94.23
KOG4239|consensus348 94.0
cd0177597 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase 93.93
cd01273142 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. 93.76
PF0219671 RBD: Raf-like Ras-binding domain; InterPro: IPR003 93.63
KOG4335|consensus558 93.4
cd01215139 Dab Disabled (Dab) Phosphotyrosine-binding domain. 93.05
cd01269129 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) dom 92.94
cd01779105 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb 92.92
smart00462134 PTB Phosphotyrosine-binding domain, phosphotyrosin 92.88
cd0178585 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PD 92.04
cd01208156 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 91.42
cd01268138 Numb Numb Phosphotyrosine-binding (PTB) domain. Nu 90.87
KOG4229|consensus 1062 90.27
PF08416131 PTB: Phosphotyrosine-binding domain; InterPro: IPR 90.16
KOG1574|consensus375 90.09
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 89.83
cd01274127 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) doma 89.4
PTZ0045890 acyl CoA binding protein; Provisional 88.97
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 88.43
cd0178698 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_ 87.11
KOG1117|consensus1186 86.54
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 85.8
cd01270140 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phos 85.63
KOG0817|consensus142 85.12
cd01212148 JIP JNK-interacting protein (JIP) Phosphotyrosine- 83.81
KOG4335|consensus558 82.72
cd01210127 EPS8 Epidermal growth factor receptor kinase subst 81.89
KOG3535|consensus 557 80.45
cd01209160 SHC SHC phosphotyrosine-binding (PTB) domain. SHC 80.43
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails Back     alignment and domain information 
Probab=100.00  E-value=5.7e-43  Score=311.00  Aligned_cols=142  Identities=42%  Similarity=0.665  Sum_probs=132.4

Q ss_pred             ccccCCCCCccCCC-CchHHHHHHHHHHHHhhcCCCCCCCCcchhHHHHHHHHhhhCCCCCchHHHHHHHHHhcCCCC-h
Q psy8450          64 FTCVPISEPLLKLE-PPLAEIAVECFECIMRFMGDLPTTPDLTEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSNKT-E  141 (525)
Q Consensus        64 ~~~~pi~~pLl~~~-~~~~~~A~~~F~~il~~mgd~~~~~~~~~~~~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n~~-~  141 (525)
                      |+++||++|||+++ +++.+.|+++|+.||+||||++.+...++.+++++|++.|+++++||||||||||||||+||+ +
T Consensus         1 ~sk~pi~~pLl~~~~~~~~~~A~~iF~~Il~ymgd~~~~~~~~~~~l~~~i~~~~~~~~~LrDEiy~QLiKQtt~Np~~~   80 (144)
T smart00139        1 YTKDPIKTSLLKLESDELQKEAVKIFKAILKFMGDLPLPKPDSHLDLVQFILQKGLAHPELRDEIYCQLIKQLTDNPSRQ   80 (144)
T ss_pred             CCCCCCCcccccCCCcHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCch
Confidence            68999999999996 579999999999999999999987767788999999999999999999999999999999999 9


Q ss_pred             hhhHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhcccccchhHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHH
Q psy8450         142 SCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVS  215 (525)
Q Consensus       142 ~~~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~~~~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~a~~  215 (525)
                      +..|||+||++|+++||||+.|.+||..||++++.+..  .+.+|++|++        |+|++|||.+||+|+.
T Consensus        81 s~~rgW~Ll~l~~~~FpPS~~l~~yL~~~l~~~~~~~~--~~~~a~~c~~--------g~R~~~Ps~~Ei~Ai~  144 (144)
T smart00139       81 SEERGWELLYLCTSLFPPSERLLPYLLQFLSRRADQPS--EQGLAKYCLY--------GARKQPPSRLELEAIL  144 (144)
T ss_pred             HHHHHHHHHHHHHhHcCChHHHHHHHHHHHHhcCCCcc--HHHHHHHHHh--------CCCCCCCCHHHHHHhC
Confidence            99999999999999999999999999999999886532  3679999997        9999999999999973

Domain present twice in myosin-VIIa, and also present in 3 other myosins.
>KOG0248|consensus Back     alignment and domain information
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>KOG3530|consensus Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>KOG3529|consensus Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information
>KOG0792|consensus Back     alignment and domain information
>KOG3527|consensus Back     alignment and domain information
>KOG4257|consensus Back     alignment and domain information
>KOG3784|consensus Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7 Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>KOG3727|consensus Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>cd00836 FERM_C FERM_C domain Back     alignment and domain information
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27) Back     alignment and domain information
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain Back     alignment and domain information
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein Back     alignment and domain information
>KOG3751|consensus Back     alignment and domain information
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain Back     alignment and domain information
>cd00824 PTBI IRS-like phosphotyrosine-binding domain Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin Back     alignment and domain information
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4 Back     alignment and domain information
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like) Back     alignment and domain information
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases Back     alignment and domain information
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat Back     alignment and domain information
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK) Back     alignment and domain information
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor Back     alignment and domain information
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B Back     alignment and domain information
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin Back     alignment and domain information
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain Back     alignment and domain information
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains Back     alignment and domain information
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat Back     alignment and domain information
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>smart00455 RBD Raf-like Ras-binding domain Back     alignment and domain information
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14 Back     alignment and domain information
>cd00934 PTB Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG4239|consensus Back     alignment and domain information
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase Back     alignment and domain information
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain Back     alignment and domain information
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA Back     alignment and domain information
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA Back     alignment and domain information
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein Back     alignment and domain information
>KOG1574|consensus Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA Back     alignment and domain information
>KOG1117|consensus Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG0817|consensus Back     alignment and domain information
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG3535|consensus Back     alignment and domain information
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
3pvl_A655 Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex 1e-09
3pzd_A511 Structure Of The Myosin X Myth4-FermDCC COMPLEX Len 3e-06
3au4_A555 Structure Of The Human Myosin-X Myth4-Ferm Cassette 6e-06
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With The Cen1 Of Sans Length = 655 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 123 LRDEVYCQLMKQTTSNKTESC-QRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRA 181
           LRDE+YCQ+ KQ T N ++S   RGW L+S+    F  S+    +L  ++          
Sbjct: 173 LRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFIHGGP------ 226
Query: 182 FHGTASVCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTT 241
             G A  C + LR+T   G R   PS  E+ A  + +     +  + G ++T++ T S T
Sbjct: 227 -PGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLL-TDSAT 284
Query: 242 VVEDICIEMCQLINVNNDLEMEEFSLY 268
              ++C  +   I++ +      FSLY
Sbjct: 285 TARELCNALADKISLKDRF---GFSLY 308
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX Length = 511 Back     alignment and structure
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound To Its Specific Cargo, Dcc Length = 555 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 6e-73
3au4_A555 Myosin-X; protein-protein complex, motor protein c 3e-72
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 3e-22
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 7e-21
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 5e-20
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 3e-16
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 5e-15
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 8e-14
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 3e-10
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 6e-09
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 8e-06
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655 Back     alignment and structure
 Score =  243 bits (620), Expect = 6e-73
 Identities = 88/571 (15%), Positives = 193/571 (33%), Gaps = 87/571 (15%)

Query: 12  EDDGKHSLLQFAMHHFRQF-------ENLKTATGELTTGTGHKKSSSDWTWREQLDLVKF 64
           ED  ++   +FA  +F+           LK              + + W        +  
Sbjct: 30  EDLSEYKFAKFAATYFQGTTTHSYTRRPLKQPLLYHDDEGDQLAALAVW------ITILR 83

Query: 65  TCVPISEPLLKLEPPLAEIAVECFECIMRFMGDLPTTPDL-------------------- 104
               + EP            +     I   +G      +L                    
Sbjct: 84  FMGDLPEPKYHTAMSDGSEKIPVMTKIYETLGKKTYKRELQALQGEGEVTKRLNDGESTV 143

Query: 105 -----------TEVKCVYTILMHCHTHEPLRDEVYCQLMKQTTSN-KTESCQRGWRLLSI 152
                      + ++ ++ I+ +      LRDE+YCQ+ KQ T N    S  RGW L+S+
Sbjct: 144 QGNSMLEDRPTSNLEKLHFIIGNGILRPALRDEIYCQISKQLTHNPSKSSYARGWILVSL 203

Query: 153 VAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTASVCLQNLRKTLRYGGRKNVPSVEEVT 212
               F  S+    +L  ++            G A  C + LR+T   G R   PS  E+ 
Sbjct: 204 CVGCFAPSEKFVKYLRNFIHGGP-------PGYAPYCEERLRRTFVNGTRTQPPSWLELQ 256

Query: 213 AVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSLYCIVE 272
           A  + +     +  + G ++T++   +TT   ++C  +   I++    +   FSLY I  
Sbjct: 257 ATKSKKPIMLPVTFMDGTTKTLLTDSATT-ARELCNALADKISLK---DRFGFSLY-IAL 311

Query: 273 GDAFTMPLAKEEYILDVTTEL---------HKNQQVFYLIFCRSVWYFP-LRLDCQLYVQ 322
            D  +   +  ++++D  ++           +    + L F + V+       +  +   
Sbjct: 312 FDKVSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHNPSEDNVATN 371

Query: 323 VLFNQIAPDYLEGLLLVLPNEQIPQDIVYDVAKLAALLHRAADMSHPPAMKETKFLLPKP 382
           +++ Q+      G       + + +     +A     +   ++M     +      +P  
Sbjct: 372 LIYQQVVRGVKFGEYRCEKEDDLAE-----LASQQYFVDYGSEMILERLLSLVPTYIPDR 426

Query: 383 ALTQRDIKPAQWVQMVQSHWTQTAPLHS----IQAKAQLLEIL-SKWPLFGSSFFAIKR- 436
            +T       +W Q+  +   +           + K  ++     KWPL  S F+   + 
Sbjct: 427 EITPLK-NLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKF 485

Query: 437 -----NGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNL 491
                     I+A+N  GV+F++    + +  + + ++++    R     +         
Sbjct: 486 SGPPLPKSDVIVAVNWTGVYFVD-EQEQVLLELSFPEIMAVSSSR--GTKMMAPSFTLAT 542

Query: 492 FQQRVARIQTDQAHEIARLIRQYMSLDRQKN 522
            +       +  A +I  L+  ++   R+++
Sbjct: 543 IKGDEYTFTSSNAEDIRDLVVTFLEGLRKRS 573
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555 Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371 Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322 Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Length = 392 Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222 Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206 Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314 Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Length = 375 Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 100.0
3au4_A555 Myosin-X; protein-protein complex, motor protein c 100.0
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 100.0
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 100.0
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 100.0
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 100.0
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 100.0
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 100.0
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 100.0
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 100.0
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 100.0
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 99.97
2j0j_A 656 Focal adhesion kinase 1; cell migration, FERM, tra 99.9
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 98.92
4gmv_A281 RAS-associated and pleckstrin homology domains-CO 98.31
3hk0_A256 Growth factor receptor-bound protein 10; GRB10, RA 97.87
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 97.69
3tca_A291 Amyloid beta A4 precursor protein-binding family 1 97.55
2cs4_A95 Protein C12ORF2; GTP binding, ubiquitin fold, stru 97.53
1wxa_A116 Afadin, AF-6 protein; RAS-binding domain, ubiquiti 97.23
3ddc_B163 RAS association domain-containing family protein; 97.06
2uwq_A86 Apoptosis-stimulating of P53 protein 2; ASPP2, ubi 97.01
1j0w_A103 Downstream of tyrosine kinase 5; beta strands, ALF 96.76
2v76_A107 Docking protein 1; alternative splicing, protein-b 96.64
1p5t_A127 DOK1, docking protein 1; signaling protein; 2.35A 96.5
2dlw_A113 Docking protein 2, isoform A; IRS domain, structur 96.4
2c5l_C117 Phosphoinositide-specific phospholipase C PLC-epsi 96.31
1xr0_B129 FGFR signalling adaptor SNT-1; phosphotyrosine bin 94.71
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 94.67
3d8d_A148 Amyloid beta A4 precursor protein-binding family 1 94.63
2bye_A110 Phospholipase C, epsilon 1; RAS association domain 94.32
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 94.06
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 93.98
2kuq_A153 Fibroblast growth factor receptor substrate 3, LI 93.86
3so6_A137 LDL receptor adaptor protein; PTB, endocytic adapt 93.85
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 93.74
1ntv_A152 Disabled homolog 1; beta-sandwich, signaling prote 93.61
2kup_A146 Fibroblast growth factor receptor substrate 3; com 93.58
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 93.51
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 93.32
2ej8_A160 DCC-interacting protein 13 alpha; structural genom 92.58
2cy5_A140 Epidermal growth factor receptor pathway substrate 92.16
2ela_A175 Adapter protein containing PH domain, PTB domain a 92.13
3f0w_A168 NUMB-R, NUMB-like protein; PH domain-like, PID dom 91.88
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 91.85
4dx8_A154 Integrin beta-1-binding protein 1; protein-protien 91.64
1p3r_A160 Disabled homolog 2; PTB, signaling protein; 2.10A 91.58
3ml4_A224 Protein DOK-7; tyrosine phosphorylation, adapter p 91.57
1aqc_A172 X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1 90.46
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 89.2
2lbb_A96 Acyl COA binding protein; protein binding, structu 89.18
4dbb_A162 Amyloid beta A4 precursor protein-binding family 1 89.03
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 88.71
1wxm_A86 A-RAF proto-oncogene serine/threonine-protein kina 86.27
2l05_A95 Serine/threonine-protein kinase B-RAF; structural 86.2
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 86.06
1n3h_A207 SHC transforming protein; free protein, beta sandw 84.63
1wgy_A104 RAP guanine nucleotide exchange factor 5; ubiquiti 84.03
3dxe_A140 Amyloid beta A4 protein-binding family B member 1; 83.8
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 81.18
1c1y_B77 Proto-onkogene serine/threonine protein kinase RAF 80.88
2dhz_A120 RAP guanine nucleotide exchange factor (GEF)- like 80.73
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 80.68
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1e-82  Score=696.29  Aligned_cols=458  Identities=21%  Similarity=0.328  Sum_probs=390.8

Q ss_pred             ecCCCCCCCHHHHHHHhcCCccccccccCccccccccCCCCCCchhhcccccccccccCCCCCccCCC-CchHHHHHHHH
Q psy8450          10 QIEDDGKHSLLQFAMHHFRQFENLKTATGELTTGTGHKKSSSDWTWREQLDLVKFTCVPISEPLLKLE-PPLAEIAVECF   88 (525)
Q Consensus        10 ~~~~~~~~~l~~fa~~~F~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~pi~~pLl~~~-~~~~~~A~~~F   88 (525)
                      +..|.++|++.+||..||..+..                      |       .|++.||++|||.++ +.....|+.+|
T Consensus        28 ~~~d~~~~~f~kfa~~yf~~~~~----------------------~-------~~~~~~l~~pll~~~~~~d~~~al~~~   78 (655)
T 3pvl_A           28 DEEDLSEYKFAKFAATYFQGTTT----------------------H-------SYTRRPLKQPLLYHDDEGDQLAALAVW   78 (655)
T ss_dssp             -CCCCTTCCHHHHHHHHBCCSSC----------------------S-------SCCCSCCSSCSBCCSSHHHHHHHHHHH
T ss_pred             CccchhhCCHHHHHHHHhCcCCc----------------------c-------cccccccccccccCCChhhHHHHHHHH
Confidence            35677899999999999997631                      1       578999999999997 45557999999


Q ss_pred             HHHHhhcCCCCCCCC------------------------------------------------------------cchhH
Q psy8450          89 ECIMRFMGDLPTTPD------------------------------------------------------------LTEVK  108 (525)
Q Consensus        89 ~~il~~mgd~~~~~~------------------------------------------------------------~~~~~  108 (525)
                      +.|||||||.|.++-                                                            .++.+
T Consensus        79 ~~ilrfmgd~~ep~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (655)
T 3pvl_A           79 ITILRFMGDLPEPKYHTAMSDGSEKIPVMTKIYETLGKKTYKRELQALQGEGEVTKRLNDGESTVQGNSMLEDRPTSNLE  158 (655)
T ss_dssp             HHHHHHHTSSCCCCCC--------CCCHHHHHHTTTTCCCCHHHHHTTC----------------CCCTTSCSSCCCHHH
T ss_pred             HHHHHHhccCCcccccccccccccCChhHHHHHHhhcccccccchhhhhhhhhhhhhcccccccccccccccccccchhH
Confidence            999999999654320                                                            12346


Q ss_pred             HHHHHHHhhhCCCCCchHHHHHHHHHhcCCCC-hhhhHHHHHHHHhhcccCCCcchHHHHHHHHhhhhhcccccchhHHH
Q psy8450         109 CVYTILMHCHTHEPLRDEVYCQLMKQTTSNKT-ESCQRGWRLLSIVAAYFTCSDTLRPFLLKYLETAAYDKRRAFHGTAS  187 (525)
Q Consensus       109 ~~~~il~~~~~~~~LrDEiy~Qi~KQ~t~n~~-~~~~r~W~Ll~l~~~~f~PS~~l~~~l~~~l~~~~~~~~~~~~~~a~  187 (525)
                      .+++|++.|+.+|+||||||||||||||+||+ +++.|||+||++|+++||||+.|.|||.+||++..       .++|.
T Consensus       159 ~~~~i~~~~~~~~~LrDEiycQl~kQ~t~np~~~s~~rgW~Ll~l~~~~f~Ps~~~~~yl~~~l~~~~-------~~~a~  231 (655)
T 3pvl_A          159 KLHFIIGNGILRPALRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFIHGGP-------PGYAP  231 (655)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHCCCCTTTHHHHHHHHHTSC-------TTTHH
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHcCc-------HHHHH
Confidence            68999999999999999999999999999999 99999999999999999999999999999998732       37999


Q ss_pred             HHHHHHHhhhhcCCCCCCCCHHHHHHHHcCCCceeeEEecCCCcEEEEEeCCcchHHHHHHHHHHHhCCCCCCCCcceEE
Q psy8450         188 VCLQNLRKTLRYGGRKNVPSVEEVTAVSAGRNSKRQLYRLPGGSETVINTKSTTVVEDICIEMCQLINVNNDLEMEEFSL  267 (525)
Q Consensus       188 ~c~~~L~r~~~~g~R~~~Ps~~Ei~a~~~~~~~~~~iv~lpdg~~~~v~v~s~tt~~ev~~~i~~~lgL~~~~~~~~FsL  267 (525)
                      +|+++|+||.++|+|++|||.+||+|+.+++++.+.| +|+||+...+.|+++||++|+++.||.++||.+.   +||||
T Consensus       232 ~c~~~L~rt~~~g~R~~~Ps~~Ei~Ai~~~~~i~~~V-~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~---~~FgL  307 (655)
T 3pvl_A          232 YCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPV-TFMDGTTKTLLTDSATTARELCNALADKISLKDR---FGFSL  307 (655)
T ss_dssp             HHHHHHHHHHHHCCCSSCCCHHHHHHHHHTCCEEEEE-EETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSC---TTEEE
T ss_pred             HHHHHHHHhhcCCCCCcCCCHHHHHHHHcCCceEEEE-EecCCceEEEEEccCCcHHHHHHHHHHHcCCccc---cccee
Confidence            9999999999999999999999999999999998885 6889999999999999999999999999999997   79999


Q ss_pred             EEEEcCCceeecCCCcchhhhhhHHHhh---------cCCcEEEEEeeeccccCC-cccchhhHHhhhhhhchhhhhccc
Q psy8450         268 YCIVEGDAFTMPLAKEEYILDVTTELHK---------NQQVFYLIFCRSVWYFPL-RLDCQLYVQVLFNQIAPDYLEGLL  337 (525)
Q Consensus       268 ~~~~~~~~~~~~L~~~~~i~Dvl~~~e~---------~~~~~~l~frr~~~~~p~-~~d~~~~~~l~y~Q~~~d~l~G~~  337 (525)
                      |+...++ .+..+.++++++|++++||+         ...+|+|+||+++|.+.. ..+++++++|+|.|+++||++|++
T Consensus       308 ~~~~~dk-~~sll~~~e~vlD~l~~~E~~~k~~~~~~~~~~~~L~FRvkff~p~~~~~~d~it~~LlYlQ~k~dIl~Grl  386 (655)
T 3pvl_A          308 YIALFDK-VSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEY  386 (655)
T ss_dssp             EEEETTE-EEEEETSSCBHHHHHHHHHHHHHTTTCCGGGCCCEEEEEECCCCTTCCGGGCHHHHHHHHHHHHHHHHHTSS
T ss_pred             EEecCCc-eeecccCceEeecHHHHHHHHHHhhccccCCCCeEEEEEEEEecCCcccccCHHHHHHHHHHHhcccccCcc
Confidence            9987543 45556788999999999984         135899999999997422 235678999999999999999999


Q ss_pred             cccCCCCCCcchHHHHHHHHHHHHHh--cCCCCCCC-hhhhhhccCcccccccCCCHHHHHHHHHHHHHhc----CCCCH
Q psy8450         338 LVLPNEQIPQDIVYDVAKLAALLHRA--ADMSHPPA-MKETKFLLPKPALTQRDIKPAQWVQMVQSHWTQT----APLHS  410 (525)
Q Consensus       338 ~~~~~~~~p~~~~~~~~~LaAl~~~~--~d~~~~~~-~~~l~~~lP~~~~~~~~~~~~~w~~~I~~~~~~l----~g~s~  410 (525)
                      +|        +.+++++.|||+++++  ||+++... ...+++|+|.+++.. ..+.++|++.|.+.|+++    +|+|+
T Consensus       387 pc--------~~E~~a~~LAAl~~Qae~Gd~~~~~~~~~~L~~~lP~~~l~~-~~~~~~w~~~I~~~hkk~~~~~~g~s~  457 (655)
T 3pvl_A          387 RC--------EKEDDLAELASQQYFVDYGSEMILERLLSLVPTYIPDREITP-LKNLEKWAQLAIAAHKKGIYAQRRTDS  457 (655)
T ss_dssp             CC--------SSHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCGGGCCS-SSCHHHHHHHHHHHHHHHHHTTCSSCH
T ss_pred             CC--------ChHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhCCHHHHhc-cCCHHHHHHHHHHHHHhhhccccCCCH
Confidence            88        2345999999999986  67654332 346889999997641 147899999999999999    89999


Q ss_pred             HHHHHHHHHHH-hcCCCCCceEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccceeccccccCC-Cce
Q psy8450         411 IQAKAQLLEIL-SKWPLFGSSFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAES-GTL  482 (525)
Q Consensus       411 ~~Ak~~fL~~~-~~~p~yGs~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~-~~~  482 (525)
                      .+|+.+||+++ ++||+||++||+|++.++      +++||||+.||++++++++ ++.+|||++|.+|...+.+. +..
T Consensus       458 ~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgVn~~GV~v~d~~~k-~ll~f~~~eI~~is~~~~~~~~~~  536 (655)
T 3pvl_A          458 QKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQ-VLLELSFPEIMAVSSSRGTKMMAP  536 (655)
T ss_dssp             HHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEEETTEEEEECTTCC-EEEEEEGGGEEEEEEECCCSSSCC
T ss_pred             HHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEEcCCceEEEcCCCc-eEEEechhHceEEeccCccccccc
Confidence            99999999999 899999999999998755      6999999999999999988 55589999999987654221 113


Q ss_pred             EEEEEecccccceEEEEecccHHHHHHHHHHHHHHHhhh
Q psy8450         483 YLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSLDRQK  521 (525)
Q Consensus       483 ~~~i~~g~~~~~~~~~~~t~qa~ei~~LI~~Yi~~~~~~  521 (525)
                      .|.+..   .++..+.|+|++|.+|++||++|+..+.++
T Consensus       537 ~ftl~~---~~~~~~~F~T~~a~~I~~LI~~yi~~Lk~r  572 (655)
T 3pvl_A          537 SFTLAT---IKGDEYTFTSSNAEDIRDLVVTFLEGLRKR  572 (655)
T ss_dssp             EEEEEE---TTSCEEEEECTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEe---ccCceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence            455543   245679999999999999999999988763
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Back     alignment and structure
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A Back     alignment and structure
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus} Back     alignment and structure
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus} Back     alignment and structure
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens} Back     alignment and structure
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2 Back     alignment and structure
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens} Back     alignment and structure
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A* Back     alignment and structure
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A Back     alignment and structure
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2 Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A Back     alignment and structure
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A Back     alignment and structure
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus} Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A* Back     alignment and structure
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens} Back     alignment and structure
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A Back     alignment and structure
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens} Back     alignment and structure
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A Back     alignment and structure
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A Back     alignment and structure
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus} Back     alignment and structure
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A* Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus} Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A* Back     alignment and structure
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B* Back     alignment and structure
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d1mixa292 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus 1e-12
d2al6a1123 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chic 3e-06
d1mixa1114 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus 8e-06
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 92 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 428 GSSFFAIKR------NGDQQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGT 481
           G SFF +K           ++L + K  V  ++  T E I      ++   ++  A   +
Sbjct: 1   GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNI---KRWAASPKS 57

Query: 482 LYLEMKCGNLFQQRVARIQTDQAHEIARLIRQYMSL 517
             L+   G+      + +QT +  +IA+LI  Y+ +
Sbjct: 58  FTLDF--GDYQDGYYS-VQTTEGEQIAQLIAGYIDI 90
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123 Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d1mixa292 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 99.66
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 99.64
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 99.62
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 99.59
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.55
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 99.27
d1gg3a381 Erythroid membrane protein 4.1R {Human (Homo sapie 98.66
d1ef1a384 Moesin {Human (Homo sapiens) [TaxId: 9606]} 98.45
d1h4ra384 Merlin {Human (Homo sapiens) [TaxId: 9606]} 98.37
d2al6a2110 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 98.32
d1h4ra299 Merlin {Human (Homo sapiens) [TaxId: 9606]} 98.22
d1ef1a299 Moesin {Human (Homo sapiens) [TaxId: 9606]} 98.2
d1j0wa_99 Downstream of tyrosine kinase 5, Dok-5 {Human (Hom 97.95
d1wxaa1103 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 97.84
d1gg3a292 Erythroid membrane protein 4.1R {Human (Homo sapie 97.57
d1xr0b_129 FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [Ta 97.56
d2cs4a184 Ras association domain-containing protein 8 {Human 97.49
d1p5ta_107 Docking protein 1, Dok1 {Mouse (Mus musculus) [Tax 96.92
d2al6a3100 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 95.66
d1qqga2104 Insulin receptor substrate 1, IRS-1 {Human (Homo s 95.51
d2byea1109 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 95.39
d1wxma173 A-Raf proto-oncogene serine/threonine-protein kina 95.38
d1c1yb_77 c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} 94.91
d2cy5a1129 EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) 94.55
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 94.5
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 94.26
d1p3ra_148 Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [T 93.54
d1wj1a_156 Numb {Mouse (Mus musculus) [TaxId: 10090]} 93.5
d1ntva_152 Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [T 91.93
d1wgya_104 Rap guanine nucleotide exchange factor 5, RapGEF5 91.39
d2c5lc1106 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 91.05
d1aqca_166 X11 {Human (Homo sapiens) [TaxId: 9606]} 89.48
d1k8rb_95 Protein kinase byr2 {Fission yeast (Schizosaccharo 88.56
d1ddma_135 Numb {Fruit fly (Drosophila melanogaster) [TaxId: 88.26
d1oy2a_191 Shc adaptor protein {Human (Homo sapiens) [TaxId: 84.5
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 82.17
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=5.2e-17  Score=130.37  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=74.1

Q ss_pred             CceEEEEEeeCC------eEEEEEccCceEEeecCccceEEEeecccceeccccccCCCceEEEEEecccccceEEEEec
Q psy8450         428 GSSFFAIKRNGD------QQILALNKHGVHFLNLLTHETISSVPYGDVISTRKVRAESGTLYLEMKCGNLFQQRVARIQT  501 (525)
Q Consensus       428 Gs~~F~v~~~~~------~~~LaIn~~Gi~~l~~~tk~~l~~~~~~~I~s~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t  501 (525)
                      ||+||+|++..+      ++|||||++||+++|++|++++.+|||++|.+|+.   +  ..+|.+..|+..++ .+.|+|
T Consensus         1 G~~fF~vk~~~~~~~~~~~~lLav~~~gv~lld~~t~~~l~~~py~~Ir~~g~---~--~~~F~~~~G~~~~g-~~~f~T   74 (92)
T d1mixa2           1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAA---S--PKSFTLDFGDYQDG-YYSVQT   74 (92)
T ss_dssp             TCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEE---C--SSEEEEECGGGSSS-CEEEEC
T ss_pred             CCceEEEEEEecCCCCCCCEEEEECcceEEEEcCCCCceEEEcchhheeeccC---C--CCEEEEEECCCcce-EEEEEe
Confidence            899999987632      78999999999999999999999999999999863   2  24678888987654 688999


Q ss_pred             ccHHHHHHHHHHHHHHH
Q psy8450         502 DQAHEIARLIRQYMSLD  518 (525)
Q Consensus       502 ~qa~ei~~LI~~Yi~~~  518 (525)
                      +||++|++||++||+++
T Consensus        75 ~q~~eI~~li~~yI~~i   91 (92)
T d1mixa2          75 TEGEQIAQLIAGYIDII   91 (92)
T ss_dssp             SCHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999865
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5ta_ b.55.1.2 (A:) Docking protein 1, Dok1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1qqga2 b.55.1.2 (A:159-262) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c5lc1 d.15.1.5 (C:2134-2239) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure