Psyllid ID: psy8454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930------
Protein Sequence
MFKTGDHKLNSSGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVLK
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccEEEEEcccccccccccccccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHccHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHccHHHHHHccccHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccHHHHcccHHHHHHHcccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccccccccccHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEHHHHccccccccccHHHHccHHHHHHHHHcHHHHHHHHHHccEEEEEccccccccccccccccEEEEEEccccccccEEEccccEEEEEccEEEEcccccccccccEEEEEEEcccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHcHHcccccccHHHEEEHccccHcHHHHHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccHcccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mfktgdhklnssGMFIGVFSelqtgtmestydedlsENIFFKALKTEHGELFEKatqdgwiiciprvcslpkyaltyedffnhilipseelpethfrtLNDQEIRICNRIIsieadggstfstQILFEETYYTDEMLKYKVLCIdnpldinlentndasiSNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTndqfeynpfdkQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLsdiqlkdldiredlydtvprarseishidcYSTILGKIGCVRRCISAISKEdtrdklqgniitvddlLPMIVFLVVKCALPNWIAHLTYMKqfhfsqssnvcidqdsFLITSLEASIEHIKSglligpsepealmsyddqeelanakfkptvemsdlTTQLKVYNKYNNYKKISSLTKLFefarlgdgdKVRAILQEEnkkedseslplchplcscddceeainlkhsqskpttqsmddrgfTVLHVAALYGRIKVVDLVLELgadtnsqdlcgcsplhyaatRGHQNVLLLLLHSgasinltdnegntalhlatnnGHETCVKALIYFNEQEVLNLNINAvnnqgdsplhaaARWGYTSIIQLLLdhganptlenkrkvtplqnannLHVAKLLNAyvhkpkplynylvpkekvsrppsppptqdkyldysdvneanisnvnvregvrprniTEIKKVEQLFALIENNEIKLIKSYfglsneekvpdnachplcqcakckedvvesesrpvtdeclninicnsdgyTALHIATSLGHYDLVRLLINYRadinivtrvkqltplhiacqNNNLSIVRLLLAAKQCnvnaqdyrgnTALHYAAINNHTNLATLLLksgarpqiknhygqTCLHMAQQMTSLSLVRVLtheapfvlk
Flexible Loop (DISEMBL)
mfktgdhklnssGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIIsieadggstfsTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLsdiqlkdldIREDLYDTvprarseishidcystilgkigCVRRCISAIskedtrdklqgniitvddlLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAkfkptvemsdlTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEenkkedseslplCHPLCSCDDCEEAINLKHsqskpttqsmddRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNeanisnvnvregvrprniTEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTheapfvlk
Low Complexity Region (SEG)
MFKTGDHKLNSSGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVynkynnykkISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVLK
Disordered region (IsUnstruct)
*************MFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIG************************VEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAIL************PLCHPLCSCDDCEEAI****************RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV**************************ANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF***
Disordered Region (DISOPRED)
********LNSSGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL*
Disordered Region (DISEMBL)
MFKTGDHKLNSSGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEE*********PLCHPLCSCDDCEEAINLKH*********MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKE**********TQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCK**********VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVLK
Disordered Region (DISPRO)
*******KLNSSGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI*******ASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFKTGDHKLNSSGMFIGVFSELQTGTMESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	936	2.2.26 [Sep-21-2011]
Q5REW9	1050	Ankyrin repeat domain-con	yes	N/A	0.887	0.791	0.327	1e-118
Q96NW4	1050	Ankyrin repeat domain-con	yes	N/A	0.886	0.790	0.329	1e-117
Q3UMR0	1048	Ankyrin repeat domain-con	yes	N/A	0.883	0.789	0.320	1e-114
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.479	0.238	0.300	2e-36
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.402	0.096	0.287	6e-34
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.372	0.187	0.305	6e-34
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.410	0.195	0.267	1e-32
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.376	0.088	0.268	1e-32
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.452	0.096	0.275	2e-32
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.412	0.270	0.258	5e-26

>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii GN=ANKRD27 PE=2 SV=1

 Score =  427 bits (1098), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 295/901 (32%), Positives = 472/901 (52%), Gaps = 70/901 (7%)

Query: 31  YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
           YDEDL +N F+ AL+    +L  K  Q   I+ +P   SL     +   F ++ILIP EE
Sbjct: 4   YDEDLLKNPFYLALQKWRPDLCSKVAQIHGIVLVPCKGSLSSSIQSTCQFESYILIPVEE 63

Query: 91  LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
               HF+TLN +++ I    I + A      S  ILFEET+Y ++   + +LCI +PL+ 
Sbjct: 64  ----HFQTLNGKDVFIQGNRIKLGAGFTCLLSVPILFEETFYNEKEESFSILCIAHPLEK 119

Query: 151 NLENTNDASISN---IQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDK 207
              +    + S+   ++T+ D  + L   S      E+ D  I  F  T  + E      
Sbjct: 120 RESSEEPLAPSDPFSLKTIEDVREFLGRHS------ERFDRNIASFHRTFRECERKSLRH 173

Query: 208 QKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACT 267
                  LY  CL   L+D+ L+  ++  +  ++ +K AVE Y+HH IY  + K +    
Sbjct: 174 HIDSANALYTKCLQQLLRDSHLKM-LAKQEAQMNLMKQAVEIYVHHEIYDLIFKYVGTME 232

Query: 268 ALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCIS 327
           A EDA FNK+ R+L D+Q KD+ ++ +    +PRA+ E++ ++  ++   K+ C+R+ + 
Sbjct: 233 ASEDAAFNKITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQ 292

Query: 328 AISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQD 387
            I++  ++ ++    +  DDLL ++++L+VK  +PNW+A+L+Y+K F FS S+    D+ 
Sbjct: 293 LITQSPSQ-RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSSAK---DEL 348

Query: 388 SFLITSLEASIEHIKSGLLIG-PSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYN 446
            + +TS EA+IE+I+ G L   P E E    + D+  L          MS L+       
Sbjct: 349 GYCLTSFEAAIEYIRQGSLSAKPPESEG---FGDRLFLKQ-------RMSLLS------- 391

Query: 447 KYNNYKKISSLTK-LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAIN 505
                +  SS T  LF+    G+  +V  +L +E+  +D+    +CHPLC CDDCE+ ++
Sbjct: 392 -----QMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDAVQ-KMCHPLCFCDDCEKLVS 445

Query: 506 LK-HSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAAT 564
            + +  S  T  S DDRG T LHVAAL G+  ++DL++  GA  N+ D  G +PLH A  
Sbjct: 446 GRLNDPSVVTPFSRDDRGHTPLHVAALCGQASLIDLLVSKGAVVNATDYHGATPLHLACQ 505

Query: 565 RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
           +G+Q+V LLLLH  AS  + DN GNT LHLA   GHE CVKAL+Y++   V +  ++  N
Sbjct: 506 KGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYGHEDCVKALVYYD---VESCRLDIGN 562

Query: 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPK 684
            +GD+PLH AARWGY +II+ LL +GA+P ++N+ K TPL+ A N  +  ++ AY     
Sbjct: 563 EKGDTPLHIAARWGYQAIIETLLQNGASPEIQNRLKETPLKCALNSKILSVMEAY----- 617

Query: 685 PLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNI-TEIKKVEQL 743
               +L  + +     +P  +  + +D      +  S  ++  G R      + ++VE+L
Sbjct: 618 ----HLSFERRQKSSEAPVQSLQRSVDSISQESSTSSFSSMSAGSRQEETKKDYREVEKL 673

Query: 744 FALIENNEIKLIKSYFGLSNEE---------KVPDNACHPLCQCAKCKEDVVESESRPVT 794
              + + ++++++     + E+          V    CHPLCQC KC          P +
Sbjct: 674 LRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAVDPEFCHPLCQCPKCAPAQKRLAKVPAS 733

Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
              L +N+ + DG + L++A   G  DL+ LL+ + A+        Q  PLH+ACQ  + 
Sbjct: 734 G--LGVNVTSQDGSSPLYVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHF 790

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHM 914
            +V+ LL +     N +D  GNT L YA    H  +  LLL+ GA     N+ G T LH 
Sbjct: 791 QVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHEVVALLLQHGAAINTSNNKGNTALHE 849

Query: 915 A 915
           A
Sbjct: 850 A 850

May be a Rab21 guanine exchange factor and regulate endosome dynamics.
Pongo abelii (taxid: 9601)

>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2

 Score =  424 bits (1090), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 297/902 (32%), Positives = 471/902 (52%), Gaps = 72/902 (7%)

Query: 31  YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
           YDEDL +N F+ AL+    +L  K  Q   I+ +P   SL     +   F ++ILIP EE
Sbjct: 4   YDEDLLKNPFYLALQKCRPDLCSKVAQIHGIVLVPCKGSLSSSIQSTCQFESYILIPVEE 63

Query: 91  LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
               HF+TLN +++ I    I + A      S  ILFEET+Y ++   + +LCI +PL+ 
Sbjct: 64  ----HFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLEK 119

Query: 151 NLENTNDASISN---IQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDK 207
              +    + S+   ++T+ D  + L   S      E+ D  I  F  T  + E      
Sbjct: 120 RESSEEPLAPSDPFSLKTIEDVREFLGRHS------ERFDRNIASFHRTFRECERKSLRH 173

Query: 208 QKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACT 267
                  LY  CL   L+D+ L+  ++  +  ++ +K AVE Y+HH IY  + K +    
Sbjct: 174 HIDSANALYTKCLQQLLRDSHLKM-LAKQEAQMNLMKQAVEIYVHHEIYNLIFKYVGTME 232

Query: 268 ALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCIS 327
           A EDA FNK+ R+L D+Q KD+ ++ +    +PRA+ E++ ++  ++   K+ C+R+ + 
Sbjct: 233 ASEDAAFNKITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQ 292

Query: 328 AISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQD 387
            I++  ++ ++    +  DDLL ++++L+VK  +PNW+A+L+Y+K F FS   ++  D+ 
Sbjct: 293 LITQSPSQ-RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFS---SLAKDEL 348

Query: 388 SFLITSLEASIEHIKSGLLIG-PSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYN 446
            + +TS EA+IE+I+ G L   P E E    + D+  L          MS L+       
Sbjct: 349 GYCLTSFEAAIEYIRQGSLSAKPPESEG---FGDRLFLKQ-------RMSLLS------- 391

Query: 447 KYNNYKKISSLTK-LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAIN 505
                +  SS T  LF+    G+  +V  +L +E+  +D+    +CHPLC CDDCE+ ++
Sbjct: 392 -----QMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDTVQ-KMCHPLCFCDDCEKLVS 445

Query: 506 LK-HSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAAT 564
            + +  S  T  S DDRG T LHVAA+ G+  ++DL++  GA  N+ D  G +PLH A  
Sbjct: 446 GRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLIDLLVSKGAMVNATDYHGATPLHLACQ 505

Query: 565 RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
           +G+Q+V LLLLH  AS  + DN GNT LHLA   GHE CVKAL+Y++   V +  ++  N
Sbjct: 506 KGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYGHEDCVKALVYYD---VESCRLDIGN 562

Query: 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPK 684
            +GD+PLH AARWGY  +I+ LL +GA+  ++N+ K TPL+ A N  +  ++ AY     
Sbjct: 563 EKGDTPLHIAARWGYQGVIETLLQNGASTEIQNRLKETPLKCALNSKILSVMEAY----- 617

Query: 685 PLYNYLVPKEKVSRPP--SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ 742
             +     ++K S  P  SP  + D     S  +  +  + + R+    ++  E   VE+
Sbjct: 618 --HLSFERRQKSSEAPVQSPQRSVDSISQESSTSSFSSMSASSRQEETKKDYRE---VEK 672

Query: 743 LFALIENNEIKLIKSYFGLSNE--EKVPDNA-------CHPLCQCAKCKEDVVESESRPV 793
           L   + + ++++++     + E  E   D         CHPLCQC KC          P 
Sbjct: 673 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 732

Query: 794 TDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
           +   L +N+ + DG + LH+A   G  DL+ LL+ + A+        Q  PLH+ACQ  +
Sbjct: 733 SG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGH 789

Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
             +V+ LL +     N +D  GNT L YA    H  L  LLL+ GA     N+ G T LH
Sbjct: 790 FQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 848

Query: 914 MA 915
            A
Sbjct: 849 EA 850

May be a Rab21 guanine exchange factor and regulate endosome dynamics.

Homo sapiens (taxid: 9606)

>sp|Q3UMR0|ANR27_MOUSE Ankyrin repeat domain-containing protein 27 OS=Mus musculus GN=Ankrd27 PE=1 SV=2

 Score =  414 bits (1063), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 290/904 (32%), Positives = 475/904 (52%), Gaps = 77/904 (8%)

Query: 31  YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
           YDEDL +N F+ AL+    +L  K  Q   I+ +P   SLP        F +++L+P+E 
Sbjct: 4   YDEDLLKNPFYLALQKWRPDLCSKVAQIHGIVLVPCRGSLPGSVQASCQFESYVLVPTE- 62

Query: 91  LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLD- 149
               HF+TL+ + + I    I + A      S  ILFEET+Y ++   + +LCI +PL+ 
Sbjct: 63  ---GHFQTLDGKAVVIEGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLER 119

Query: 150 --INLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDK 207
              + E +  A   +++T+ D  + L   S      EK D+ I  F  T  + E      
Sbjct: 120 RETSEEPSAPADPFSLKTIEDVREFLGRHS------EKFDKNIASFHRTFRECERKSLRH 173

Query: 208 QKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACT 267
               V  LY  CL   L+D+ L+  ++  +  ++ +K AVE Y+HH IY  + K +    
Sbjct: 174 HIDSVNALYTKCLQQLLRDSHLK-VLAKQEAQMNLMKQAVEMYVHHDIYDLIFKYVGTME 232

Query: 268 ALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCIS 327
           A EDA FNK+ R+L D+Q KD+ ++ +    +PRA+ E+  ++  ++   K+ C+R+ + 
Sbjct: 233 ASEDAAFNKITRSLQDLQQKDIGVKPEFSFNIPRAKRELGQLNKCTSPQQKLLCLRKVVQ 292

Query: 328 AISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQD 387
            +++  ++ ++    +  DDLL ++++L+VK  +PNW+A+L+Y+K F FS S+    D+ 
Sbjct: 293 LMTQSPSQ-RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSSAK---DEL 348

Query: 388 SFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNK 447
            + +TS+EA+IE+I+ G L   +         D E   +  F        L  ++ + ++
Sbjct: 349 GYCLTSVEAAIEYIRQGSLSTKTP--------DAEGFGDRLF--------LKQRMNLLSQ 392

Query: 448 YNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK 507
             +    + +  LF+    G+  +V  +L ++++ +D+    +CHPLCSC+DCE+ I+ +
Sbjct: 393 MTS----TPIDCLFKHIASGNQKEVERLLSQDDQDKDAMQ-KMCHPLCSCEDCEKLISGR 447

Query: 508 -HSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
            +  S  T  S DDRG T LHVAAL G+  ++D ++  GA  N+ D  G +PLH A  +G
Sbjct: 448 LNDPSVVTPFSRDDRGQTPLHVAALCGQASLIDFLVSKGAVVNATDYHGSTPLHLACQKG 507

Query: 567 HQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
            Q+V LLLLH  AS  + DN GNT LHLA   G E CVKAL+Y++ Q    L+I   N +
Sbjct: 508 FQSVTLLLLHYKASTEVQDNNGNTPLHLACTYGQEDCVKALVYYDVQ-ACRLDIG--NEK 564

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAY----VHK 682
           GD+ LH AARWGY  II+ LL +GA   ++N+ K TPL+ A N  +  ++ A+      +
Sbjct: 565 GDTALHIAARWGYEGIIETLLQNGAPTAVQNRLKETPLKCALNSKILSIMEAHHLSSDRR 624

Query: 683 PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNI-TEIKKVE 741
           P+P           S  P+  PT  + +D      +  S  ++    R   +  + ++VE
Sbjct: 625 PRP-----------SEVPAQSPT--RSVDSISQGSSTSSFSSISVSFRQEEVKKDYREVE 671

Query: 742 QLFALIENNEIKLIKSYFGLSNEEKVPD----------NACHPLCQCAKCKEDVVESESR 791
           +L   + + ++++++ Y     E+ + D            CHPLCQC KC     +  +R
Sbjct: 672 KLLRAVADGDLEMVR-YLLEWTEDDLDDVEDAISTVDLEFCHPLCQCPKCAP--AQKLAR 728

Query: 792 PVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQN 851
            ++   L++N+ N DG++ LH+A   G  DLV LL+ + A  +      Q  PLH+ACQ 
Sbjct: 729 -ISANGLSVNVTNQDGFSPLHMAALHGRTDLVPLLLKHGA-YSGARNTSQAVPLHLACQQ 786

Query: 852 NNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTC 911
            +  + + LL +     N +D  GNT L  A    H  +A LLL+ GA     N+ G T 
Sbjct: 787 GHFQVAKCLLDSN-AKPNKKDLSGNTPLICACSAGHHEVAALLLQHGASINACNNKGNTA 845

Query: 912 LHMA 915
           LH A
Sbjct: 846 LHEA 849

May be a Rab21 guanine exchange factor and regulate endosome dynamics.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  154 bits (390), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 239/496 (48%), Gaps = 47/496 (9%)

Query: 470 DKVRAILQEENKKEDS--ESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLH 527
           D VR +LQ + + +D   + L   H    C     A  L    +KP +++++  GFT LH
Sbjct: 319 DCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALN--GFTPLH 376

Query: 528 VAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNE 587
           +A     ++V++L+L+ GA  ++    G +PLH A+  GH  ++  LL  GAS N+++ +
Sbjct: 377 IACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 436

Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
             T LH+A   GH    K L+    Q    +N  A ++Q  +PLH AAR G+T++++LLL
Sbjct: 437 VETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLL 490

Query: 648 DHGANPTLENKRKVTPLQ-NANNLHVAKLLNAYVHKPK-----------PLY------NY 689
           ++ ANP L      TPL   A   HV  +L A + K             PL+        
Sbjct: 491 ENNANPNLATTAGHTPLHIAAREGHVETVL-ALLEKEASQACMTKKGFTPLHVAAKYGKV 549

Query: 690 LVPKEKVSRPPSPPPTQDKYLDYSDV----NEANISNVNVREGVRPRNITEIKKVEQLFA 745
            V +  + R   P       L    V    N  +I  + +  G  P +         L  
Sbjct: 550 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHI 608

Query: 746 LIENNEIKLIKS---YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
             + N++++ +S   Y G +N E V      PL   A  +E   E  +  ++ +  N N+
Sbjct: 609 AAKQNQVEVARSLLQYGGSANAESV--QGVTPLHLAA--QEGHAEMVALLLSKQA-NGNL 663

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
            N  G T LH+    GH  +  +LI +   ++  TR+   TPLH+A    N+ +V+ LL 
Sbjct: 664 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLL- 721

Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
             Q +VNA+   G + LH AA   HT++ TLLLK+GA P   +  G T L +A+++  +S
Sbjct: 722 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 781

Query: 923 ---LVRVLTHEAPFVL 935
              +++V+T E  FVL
Sbjct: 782 VTDVLKVVTDETSFVL 797

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 200/445 (44%), Gaps = 68/445 (15%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           GFT LH+A    RIKV++L+++ GA   +    G +P+H AA  GH N++LLLL +GAS 
Sbjct: 398 GFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASP 457

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIY---------------------FNEQEVLNL-- 618
           ++T+  G TALH+A   G    V+ L+                        + E++ L  
Sbjct: 458 DVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLLL 517

Query: 619 ----NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
               + +A    G +PLH +AR G   +  +LL+ GA  +L  K+  TPL  A    +L 
Sbjct: 518 QHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLD 577

Query: 672 VAK-LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDV-----NEANISNVNV 725
           VAK LL           N L P    +           + D   V      +    +   
Sbjct: 578 VAKLLLQRRAAADSAGKNGLTPLHVAA-----------HYDNQKVALLLLEKGASPHATA 626

Query: 726 REGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDV 785
           + G  P +I   K   Q+ + + N        Y   +N   V      PL   ++     
Sbjct: 627 KNGYTPLHIAAKKNQMQIASTLLN--------YGAETN--TVTKQGVTPLHLASQ----- 671

Query: 786 VESESRPVT---DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL 842
            E  +  VT   D+  NI++    G T+LH+A      ++  +L  + AD +  T++   
Sbjct: 672 -EGHTDMVTLLLDKGANIHMSTKSGLTSLHLAAQEDKVNVADILTKHGADRDAYTKLG-Y 729

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           TPL +AC   N+ +V  LL  +  NVNA+   G T LH AA   HT++  +LL+ GA+P 
Sbjct: 730 TPLIVACHYGNVKMVNFLLK-QGANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPN 788

Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
                G T L +A+++  +S+V  L
Sbjct: 789 ATTANGNTALAIAKRLGYISVVDTL 813

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  146 bits (369), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 129/422 (30%), Positives = 195/422 (46%), Gaps = 73/422 (17%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
           T LH+AA  G  +V   +L+  A  N++     +PLH AA  GH  ++ LLL +GAS NL
Sbjct: 435 TPLHMAARAGHTEVAKYLLQNKAKANAKAKDDQTPLHCAARIGHTGMVKLLLENGASPNL 494

Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII 643
               G+T LH A   GH     AL+   E+E    +   +  +G +PLH AA++G   + 
Sbjct: 495 ATTAGHTPLHTAAREGHVDTALALL---EKEA---SQACMTKKGFTPLHVAAKYGKVRLA 548

Query: 644 QLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKP-KPLYNYLVPKEKVSRP 699
           +LLL+H A+P    K  +TPL  A   NNL + KLL      P  P +N   P       
Sbjct: 549 ELLLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP------- 601

Query: 700 PSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS-- 757
                                                      L    + N+I++ +S  
Sbjct: 602 -------------------------------------------LHIAAKQNQIEVARSLL 618

Query: 758 -YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATS 816
            Y G +N E V      PL   A  +E   E  +  ++ +  N N+ N  G T LH+ + 
Sbjct: 619 QYGGSANAESV--QGVTPLHLAA--QEGHTEMVALLLSKQA-NGNLGNKSGLTPLHLVSQ 673

Query: 817 LGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN 876
            GH  +  +LI +   ++  TR+   TPLH+A    N+ +V+ LL   Q +VNA+   G 
Sbjct: 674 EGHVPVADVLIKHGVTVDATTRMG-YTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGY 731

Query: 877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS---LVRVLTHEAPF 933
           + LH AA   HT++ TLLLK+GA P   +  G T L +A+++  +S   +++V+T E   
Sbjct: 732 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSV 791

Query: 934 VL 935
           VL
Sbjct: 792 VL 793

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 204/471 (43%), Gaps = 87/471 (18%)

Query: 488 LPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGAD 547
           L   H    C   + A  L   ++ P  ++++  GFT LH+A    RI+V++L+L+ GA 
Sbjct: 351 LTALHVAAHCGHYKVAKVLLDKKASPNAKALN--GFTPLHIACKKNRIRVMELLLKHGAS 408

Query: 548 TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
             +    G +P+H AA  GH N++  L+H GAS N T+  G TALH+A  +G    V+ L
Sbjct: 409 IQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYL 468

Query: 608 IY---------FNEQEVLNLNI------------------NAVNNQGDSPLHAAARWGYT 640
           +           ++Q  L+++                   NA    G +PLH AAR G+ 
Sbjct: 469 VQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHE 528

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPLYNYLVPKEKVS 697
            +   LLDHGA+ ++  K+  TPL  A     L VA LL                   + 
Sbjct: 529 DVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVASLL-------------------LQ 569

Query: 698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS 757
           +  SP                   +   + G+ P ++          A  +N ++ L+  
Sbjct: 570 KSASP-------------------DAAGKSGLTPLHVA---------AHYDNQKVALLLL 601

Query: 758 YFGLSNEEKVPDNACHPLCQCAKCKE-DVVESESRPVTDECLNINICNSDGYTALHIATS 816
             G S       N   PL   AK  + D+  S    + +   + N     G  ++H+A  
Sbjct: 602 DQGAS-PHAAAKNGYTPLHIAAKKNQMDIATS----LLEYGADANAVTRQGIASVHLAAQ 656

Query: 817 LGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN 876
            GH D+V LL++  A++N+  +   LTPLH+A Q + +++  +L+  +  +V+AQ   G 
Sbjct: 657 EGHVDMVSLLLSRNANVNLSNK-SGLTPLHLAAQEDRVNVAEVLV-NQGAHVDAQTKMGY 714

Query: 877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           T LH      +  +   LL+  A+   K   G T LH A Q     ++ VL
Sbjct: 715 TPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTALHQAAQQGHTHIINVL 765

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 197/451 (43%), Gaps = 99/451 (21%)

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           S   +G T LH+A+L G+ +VV ++++ GA+ N+Q   G +PL+ AA   H +V+  LL 
Sbjct: 92  SATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLE 151

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLN----------------- 619
           +GA+ +    +G T L +A   GH   V  L+  + +  + L                  
Sbjct: 152 NGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAALL 211

Query: 620 --------------INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ 665
                         +N     G +PLH AA +G  ++  LLL+ GA      +  +TPL 
Sbjct: 212 LQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLH 271

Query: 666 NAN---NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISN 722
            A+   N ++ KLL                                      ++     +
Sbjct: 272 VASKRGNTNMVKLL--------------------------------------LDRGGQID 293

Query: 723 VNVREGVRPRNITEIKKVEQLFALI-ENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAK- 780
              R+G+ P +       +Q+  L+ E     L ++  GLS           PL   A+ 
Sbjct: 294 AKTRDGLTPLHCAARSGHDQVVELLLERGAPLLARTKNGLS-----------PLHMAAQG 342

Query: 781 ----CKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIV 836
               C + +++ ++ PV D  L       D  TALH+A   GHY + +LL++ RA+ N  
Sbjct: 343 DHVECVKHLLQHKA-PVDDVTL-------DYLTALHVAAHCGHYRVTKLLLDKRANPN-A 393

Query: 837 TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
             +   TPLHIAC+ N + ++ LL+     ++ A    G T +H AA   H N+  LLL+
Sbjct: 394 RALNGFTPLHIACKKNRIKVMELLVKYG-ASIQAITESGLTPIHVAAFMGHLNIVLLLLQ 452

Query: 897 SGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           +GA P + N  G+T LHMA +   + +VR L
Sbjct: 453 NGASPDVTNIRGETALHMAARAGQVEVVRCL 483

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 210/482 (43%), Gaps = 58/482 (12%)

Query: 479 ENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVV 538
           EN  +    LP  H     DD + A  L  + +    +S    GFT LH+AA YG I V 
Sbjct: 194 ENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKS--GFTPLHIAAHYGNINVA 251

Query: 539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN 598
            L+L   A  +       +PLH A+ RG+ N++ LLL  GA I+    +G T LH    +
Sbjct: 252 TLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARS 311

Query: 599 GHETCVKALI------------------------YFNEQEVL---NLNINAVNNQGDSPL 631
           GHE  V+ L+                        + N  ++L   N+ ++ V N   + L
Sbjct: 312 GHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTAL 371

Query: 632 HAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPLYN 688
           H AA  G+  + ++LLD  ANP  +     TPL  A   N + V +LL            
Sbjct: 372 HVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELL----------LK 421

Query: 689 YLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIE 748
           +    + V+     P     ++ +      NI +  +  G  P N T ++    L     
Sbjct: 422 HGASIQAVTESGLTPIHVAAFMGH-----VNIVSQLMHHGASP-NTTNVRGETALHMAAR 475

Query: 749 NNEIKLIKSYF--GLSNEEKVPDNACHPLCQCAK-CKEDVVESESRPVTDECLNINICNS 805
           + + ++++     G   E K  D+   PL   A+  K D+V+     +  +  + N   +
Sbjct: 476 SGQAEVVRYLVQDGAQVEAKAKDDQT-PLHISARLGKADIVQQ----LLQQGASPNAATT 530

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
            GYT LH++   GH D+   L+++ A ++I T+ K  TPLH+A +   L +  LLL  K 
Sbjct: 531 SGYTPLHLSAREGHEDVAAFLLDHGASLSITTK-KGFTPLHVAAKYGKLEVANLLLQ-KS 588

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            + +A    G T LH AA  ++  +A LLL  GA P      G T LH+A +   + +  
Sbjct: 589 ASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIAT 648

Query: 926 VL 927
            L
Sbjct: 649 TL 650

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  120 bits (301), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 192/414 (46%), Gaps = 28/414 (6%)

Query: 519  DDRGFTVLHVAAL-----YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL 573
            D  G T L VAAL      G   VV L+++ GA+ +  D  G +PL  AA  GH +V+ L
Sbjct: 707  DVDGRTALSVAALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDL 766

Query: 574  LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633
            LL  GA ++ TDN G T L  A + GH + V  L+++         +++++++G + L  
Sbjct: 767  LLEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLFWGAA------VDSIDSEGRTVLSI 820

Query: 634  AARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK 693
            A+  G   +++ LLD G +    +    TPL  A      +L+   + +     N +   
Sbjct: 821  ASAQGNVEVVRTLLDRGLDENHRDDAGWTPLHMA-AFEGHRLICEALIEQGARTNEI--- 876

Query: 694  EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK 753
            +   R P    +Q+ + D   +   N SN++ R G   RN   +  +E            
Sbjct: 877  DNDGRIPFILASQEGHYDCVQILLENKSNIDQR-GYDGRNALRVAALE--------GHRD 927

Query: 754  LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHI 813
            +++  F    +    D    P       +  +  +E     +   N+   +++G TALH+
Sbjct: 928  IVELLFSHGADVNCKDADGRPTLYILALENQLTMAEY--FLENGANVEASDAEGRTALHV 985

Query: 814  ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
            +   GH ++V++LI Y AD+N     K+ + L  A    ++ +V+LL+      V+    
Sbjct: 986  SCWQGHMEMVQVLIAYHADVNAADNEKR-SALQSAAWQGHVKVVQLLIEHGAV-VDHTCN 1043

Query: 874  RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +G TAL  AA   H ++  +LL+ GA P   + +G+T + +A +     ++++L
Sbjct: 1044 QGATALCIAAQEGHIDVVQVLLEHGADPNHADQFGRTAMRVAAKNGHSQIIKLL 1097

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	936
345482552	969	PREDICTED: ankyrin repeat domain-contain	0.913	0.882	0.389	0.0
218783306	920	putative VPS9-ankyrin repeat-containing	0.929	0.945	0.375	1e-178
242014166	885	ankyrin repeat-containing protein, putat	0.895	0.946	0.369	1e-160
332017619	873	Ankyrin repeat domain-containing protein	0.899	0.964	0.350	1e-150
307195669	875	Ankyrin repeat domain-containing protein	0.907	0.970	0.357	1e-150
322794489	881	hypothetical protein SINV_01456 [Solenop	0.912	0.969	0.352	1e-145
307170759	797	Ankyrin repeat domain-containing protein	0.822	0.966	0.361	1e-143
390351983	1079	PREDICTED: ankyrin repeat domain-contain	0.926	0.803	0.338	1e-138
91089471	761	PREDICTED: similar to VPS9-ankyrin repea	0.800	0.984	0.341	1e-127
281339121	1050	hypothetical protein PANDA_004160 [Ailur	0.891	0.794	0.338	1e-120

>gi|345482552|ref|XP_001607835.2| PREDICTED: ankyrin repeat domain-containing protein 27-like [Nasonia vitripennis]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/912 (38%), Positives = 542/912 (59%), Gaps = 57/912 (6%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           ME  YDEDLS+N FF+ L+ ++  +F +A  +GWIIC+PR  +  K ALT EDF  HILI
Sbjct: 70  MEFNYDEDLSQNSFFQTLQEDYQPIFNRAIGEGWIICVPRCGTFTKGALTKEDFLGHILI 129

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
           P++ELP THF TL D E+R+ NR ++IE +     S  +LFEET+YT++  KY V CI+ 
Sbjct: 130 PNDELPGTHFHTLTDTEVRLYNRALTIECEDSEPRSLHLLFEETFYTEDNNKYCVWCIEG 189

Query: 147 PLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQ-FEYNPF 205
            L+    ++ D  +  + +L++C+DLLW E   K + +++D AI+ F   + +  E    
Sbjct: 190 LLEQGTTSSRD-EVPVVSSLKECVDLLWAEVSDKSVLKELDAAIEEFERAHSKSLENECL 248

Query: 206 DKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITA 265
             Q+ LV  LY   L I LKDN LR+    ++Y + +IKL  ETY+ HG+ K L + ++ 
Sbjct: 249 QMQRDLVSMLYAKGLRILLKDNGLRERTLESRYFMQTIKLCAETYVLHGLRKILPQAVSF 308

Query: 266 CTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRC 325
           CTA EDA  NK+I+NL D+QL D  +R DLYD V RA+ E+S +D Y T+LGK  C++R 
Sbjct: 309 CTAAEDASLNKIIKNLHDLQLADFGVRPDLYDGVTRAKLELSRLDSYFTVLGKTSCLKRA 368

Query: 326 ISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCID 385
              +S+ ++        ++ D+LLP+++FLVVK  L +W A LT+MKQF +S SS    D
Sbjct: 369 ARFVSQGESS-------VSSDELLPVLIFLVVKSGLASWCAQLTFMKQFRYSASSAYEAD 421

Query: 386 QDSFLITSLEASIEHIKSG-LLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKV 444
           +  FL+TSLEA++EH+KSG +   PSE + L   D Q  + +   K  +E SD    L  
Sbjct: 422 EAGFLVTSLEAAVEHVKSGSVRQAPSEAQ-LDKVDGQ--VKSTDEKNGLEESDSQGGL-- 476

Query: 445 YNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAI 504
                       + +LFE A+ G+  +V+ IL ++ +    E+  LCHPLC C+ CE ++
Sbjct: 477 ------------MGELFEHAKSGNLSEVQRILTDDAEGASKET-KLCHPLCLCESCERSL 523

Query: 505 NLKHSQSKPTTQ-SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA 563
           +       P      DDRG   L +A ++G++ VVD +LE GAD N  D  G + LH AA
Sbjct: 524 SRSSDSELPAGLLWRDDRGQGCLQLACVHGQVTVVDYLLERGADPNDVDAEGVNCLHCAA 583

Query: 564 TRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAV 623
            RGHQN LLLLLH+ A I+ TD  GN+ALH A ++GH+ CVKAL+YF E+  + LN++A 
Sbjct: 584 ARGHQNTLLLLLHANARIDATDARGNSALHFAADHGHDACVKALLYFAERGRVPLNVSAA 643

Query: 624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHK- 682
           N QGD+PLH A++WGY+SI+++LL++GA+P+ +N+R  TP+  A++ H+A+L      + 
Sbjct: 644 NQQGDTPLHFASKWGYSSIVEILLEYGADPSYKNRRGQTPMTLAHSGHIARLFEGSSSRT 703

Query: 683 --PKPLYNYLVP-KEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITE-IK 738
             P     Y    KE ++         +   D       + ++   R G    ++TE + 
Sbjct: 704 STPTGSSGYGSGVKESIA---------EAVGDDHSAKSGSAASTPSRLGYHRSSLTEGMH 754

Query: 739 KVEQLFALIENNEIKLIKSYFGLSN-------EEKVPDNACHPLCQCAKC---KEDVVES 788
           K+++LFA +   +I+L   Y GL          E+     CHPLC C KC   +E   E 
Sbjct: 755 KIDRLFAAVAEGDIRLASYYLGLEGPCNKTYISEQDEPKFCHPLCNCEKCVSIEELSYEK 814

Query: 789 ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA 848
           E++P     + IN  NS G TALHIA+++G  +++++L++  A +N+VTR +  TPLH+A
Sbjct: 815 ETKPP----IAINAVNSSGETALHIASAVGCTEIIQVLLDAGAKVNLVTRSEGRTPLHLA 870

Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
           C ++    V++LL+   CN +A+D   +T LH ++   +  +  +L++ GA P+I+N  G
Sbjct: 871 CMHDRTKTVKMLLSCGSCNPDAKDNARDTPLHLSSRAGNVRIVEMLVRHGANPRIRNLAG 930

Query: 909 QTCLHMAQQMTS 920
            T L   +++ S
Sbjct: 931 ATPLDEVERIKS 942

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|218783306|dbj|BAH03677.1| putative VPS9-ankyrin repeat-containing protein [Bombyx mori]

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 356/949 (37%), Positives = 557/949 (58%), Gaps = 79/949 (8%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           M+ TYDE +SEN FF  LK E+  LF+    + WIIC+PR+ SL     T EDF  H+L+
Sbjct: 1   MDGTYDEIVSENPFFLELKNEYANLFQHCLSESWIICVPRIGSLTSRVFTVEDFCAHLLV 60

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
           PS+ELPETHF TL ++++ + N++I++E   G    + ILFEET+YT++ +KYKV CI++
Sbjct: 61  PSDELPETHFNTLTEKQVTVLNKVITVEVSKGLPLQSHILFEETFYTEDFMKYKVWCIES 120

Query: 147 PLDINLENTNDASISN--IQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLL--TNDQFEY 202
           PL+   + T+DA +S   +  + DCIDLLWT++ G+++ + +++ ++ FL   +N     
Sbjct: 121 PLEPT-KTTDDAVVSKEYLSGINDCIDLLWTQAAGRQVLDNIEQNVETFLKKHSNLPVAI 179

Query: 203 NPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKG 262
            P    +  V +LY  CL + L++ +LR      K ++++IKL+VE+YM H ++ ++ K 
Sbjct: 180 GPL---RDTVSELYTQCLQVTLQNRRLRDKSKSCKQVLENIKLSVESYMQHLLFDSIFKS 236

Query: 263 ITACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCV 322
           I    A EDA  NK IRN+ DIQL+DLDI++DLY TVP+A+  +S ID Y+T+L K+ C+
Sbjct: 237 ICTSCAYEDAHLNKKIRNMCDIQLRDLDIKKDLYHTVPKAKQILSKIDTYNTVLEKLVCL 296

Query: 323 RRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNV 382
           ++ +++I+K+D+ + +   ++T DDLLP+ VFLV+K  LPNW + LTYMK+F FS +   
Sbjct: 297 KQALNSINKKDSSNNVV--LLTADDLLPVFVFLVIKSGLPNWFSQLTYMKEFRFSSAGKC 354

Query: 383 CIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQL 442
             D+ +FLIT+LEA I HI+SG L GP +PEA   Y+      N   K     S LT  +
Sbjct: 355 DGDESAFLITTLEAVIGHIQSGALTGPPDPEAYYYYESNLTEENLSCKQ--RKSSLTESI 412

Query: 443 KVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQE-----ENKKEDSESL--------- 488
              + YN   K  +L  +FE  +    ++V+ ILQ+     +N + + +++         
Sbjct: 413 STSDTYN---KEENLEYIFELIKANQCEQVQTILQKNQKHLQNLQNNEDNVLKISLDDLS 469

Query: 489 -------------PLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI 535
                         LCHPLC+C+ C+  I+    ++ PT  S D  G T LHVA+++G+ 
Sbjct: 470 NDEDDDSDLEIYHKLCHPLCNCNKCKCKISKNLLKTCPTMTSRDSHGLTALHVASIHGKA 529

Query: 536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
            +V+ +LE+G++ N+ DL  CS LHYA++RGHQNVLLLLLHSGA+IN  + + NT LHLA
Sbjct: 530 TIVETLLEMGSEINATDLNECSALHYASSRGHQNVLLLLLHSGANINQKNIDKNTPLHLA 589

Query: 596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL 655
            NNGH  CVKA+IYF E     +NIN  N  G++PLH A++WGY  I +LL++HG+ P+L
Sbjct: 590 VNNGHLHCVKAIIYFAEHSGRKININCANESGNTPLHLASKWGYEGIARLLIEHGSEPSL 649

Query: 656 ENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL-VPKEKV------SRPPSPPPTQDK 708
           +N    T    A+NL + ++L +       L+ Y+ +   +V      S  P+    Q+ 
Sbjct: 650 QNSYHKTAFDYAHNLRILQVLKSCTPN---LFEYIHITSSEVKKISCESEKPTSLKLQNL 706

Query: 709 YLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFG------LS 762
            L  SD N+A+            + I  +K +E++   I   ++KL   Y        ++
Sbjct: 707 TLKCSDTNDAS------------KTIENLKLIERILRAISYGDVKLACFYMNIDYSAFIA 754

Query: 763 NEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDL 822
            +++  ++ CHPLC+C  CK      ++   TD   ++N+C+S+G+TALH A   G  + 
Sbjct: 755 PDKEKSNSLCHPLCECQYCKR-----KTESCTD--FDVNVCDSNGFTALHYAARYGLDEF 807

Query: 823 VRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA 882
             +LI  RA++N   +  Q TPLH+A  NN   ++RLLL     N+NA D   NT LH A
Sbjct: 808 CNILIFNRANVNCRNKKAQ-TPLHLAAINNKTVVIRLLL-DNGANINAIDVARNTPLHDA 865

Query: 883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
           +   +   A +LL       + N   +T L +A+    L+++ ++ + A
Sbjct: 866 SETGNIGAAKILLSYNPDITLLNATEKTALAVAKDKVHLTIIDLIDNYA 914

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014166|ref|XP_002427766.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis] gi|212512220|gb|EEB15028.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis]

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 342/926 (36%), Positives = 521/926 (56%), Gaps = 88/926 (9%)

Query: 31  YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
           YDE+L EN FF  L+ E+ ELF K   +  IIC+P+  S PK  L +EDF +HIL+P++E
Sbjct: 9   YDENLMENSFFVTLRKEYEELFLKVVAENCIICVPKTDSFPKCTLAFEDFLSHILVPTDE 68

Query: 91  LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
           LPE+HF +L   +++I NRI++I+++ G     QILF+ET+YT+E LKY+VLC+  PLD 
Sbjct: 69  LPESHFLSLCGVKVKISNRILTIDSETGRQSCIQILFQETFYTEEGLKYEVLCVGQPLDE 128

Query: 151 NLENTNDASISN---IQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDK 207
           ++   +D    N   ++  +DC+D LWTE+K  E  E +D+ +  FL   D+ +      
Sbjct: 129 SI--ASDVEYFNGKVLKNFKDCLDFLWTETKTHETIENIDKEVDEFLKKFDKSQMITLQF 186

Query: 208 QKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACT 267
            +     LY+ C+ +  K+  +R+      Y   ++K+A+ETY+  G YK +I+ I  CT
Sbjct: 187 IEESFNSLYKKCIQVLFKNPNIRKKYK--NYSSKTLKIALETYLQQGTYKKIIRSIALCT 244

Query: 268 ALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCIS 327
           + +DA+ NK IRNLSD+  KD  +    ++ +P+AR E+S I+ Y T++ K+ C+++   
Sbjct: 245 STDDAKLNKHIRNLSDLPFKDFKLDPIFFNNIPKARLELSKINGYFTVIDKLRCLKQTAV 304

Query: 328 AISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQD 387
           A+SK      L    +  D+LL ++ FL++K  LPNW A L ++K F+   SSN   D+ 
Sbjct: 305 ALSKFKNDKAL----LNADNLLQILTFLIIKSNLPNWNAQLKFLKLFY---SSNNIFDES 357

Query: 388 SFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNK 447
           ++LI SLEA+I +I+SG              + QE  +  K K  +E + +      Y K
Sbjct: 358 NYLIVSLEAAITYIQSG--------------NFQESESKYKLKNNLEKNSIQ-----YGK 398

Query: 448 YNNYKKISSLTKLFEFARLGDGDKVRAILQEENKK-EDSESLPLCHPLCSCDDCEEAINL 506
            +   +  +L + F F  +GD + V+ I++  +KK E+S +L LCHPLC CD C    N 
Sbjct: 399 -STLSQEQALNEFFHFVTVGDLENVKDIIENGHKKVENSLNLKLCHPLCFCDKCRVLFN- 456

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
             S+  P+  S D++  T LH+A++     VV+ ++  G D N+ D  G +P HYAA +G
Sbjct: 457 HFSEVLPSVTSADEKNLTALHIASMNNVPNVVEYLINKGGDCNAFDCEGRTPAHYAALKG 516

Query: 567 HQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
           HQN LLLLLH+ A IN  DN  NT LHL +NNGH+ CVKALIYF+E   + L +N+ N++
Sbjct: 517 HQNALLLLLHNNAHINAEDNSFNTPLHLCSNNGHDNCVKALIYFSEYSGVKLKVNSQNSK 576

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPL 686
           GD+PLH A++WG+ SI++ LL+ GANP + N+ K +PL  + N  + +LL     K +  
Sbjct: 577 GDTPLHYASKWGFESIVRHLLEFGANPNILNRNKNSPLDYSYNDKILQLLK---QKSQNF 633

Query: 687 YNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVRE----GVRPRNITEIKKVEQ 742
            N L                        VN   +S++  +E      +P  I  +KK+E+
Sbjct: 634 ENTL-----------------------KVNNRQLSSLKFKEQSYRDTQPNAIDTMKKIEK 670

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVP---DN-------------ACHPLCQCAKCKEDVV 786
           +F  IE  ++ L+  YFG    + VP   DN              CHPLC C KC   + 
Sbjct: 671 IFRAIEIGDVNLVCFYFGFDASDFVPSASDNITLLKNKERENYTRCHPLCACKKCTALIE 730

Query: 787 ESESRPVT-----DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ 841
           E+     T      + +N+N CNSDGYTALH+A+  G  DLV+  I   A +N+ T  K+
Sbjct: 731 ETSREDKTISFSHKKTINLNTCNSDGYTALHVASKAGKIDLVKGFIKNGAGLNVQTSSKK 790

Query: 842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP 901
            TPL +A QN  L +V+ LL    C ++ QDY+ NTALHYA    ++ L  +LLK     
Sbjct: 791 WTPLMLAVQNQRLDVVKELLNT-GCKIDVQDYKLNTALHYACRTGNSKLVKILLKYEPDT 849

Query: 902 QIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +KN   +T L  A+    L ++++ 
Sbjct: 850 NLKNIDNKTPLQEAKDQLYLGIIQIF 875

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017619|gb|EGI58316.1| Ankyrin repeat domain-containing protein 27 [Acromyrmex echinatior]

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 318/907 (35%), Positives = 497/907 (54%), Gaps = 65/907 (7%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           M + YDEDL+EN F + L+ EH   F++A Q+GWIIC+PR  S     L  ++   HIL+
Sbjct: 1   MNAGYDEDLTENRFLRELQDEHEATFQRAVQEGWIICVPRSGSFISRKLEEDEINAHILV 60

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
           P ++L    F +L+ +E+ + +RI+ ++ D    +S+++LFEE +Y+D+  KY V CI+ 
Sbjct: 61  PGKDLSVASFSSLSGREVLVEDRILYVKHDNAERYSSRLLFEEIFYSDDSRKYCVWCIER 120

Query: 147 PLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
           PL+ ++   +D  +S I  L++ ++ L  E   +++ + ++  IK FL   +  E     
Sbjct: 121 PLEASMY-VSDNCVSVITNLQEAVNFLQVELLDRQLRDDLETKIKDFLYVKN-LERKSIQ 178

Query: 207 KQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITAC 266
            Q+ LV +LY +CL + L +  LR+  S NK    +I++++ETY+ + +   L+K ++A 
Sbjct: 179 TQRDLVHELYADCLEMLLDNAMLRKKTSGNKQYHWNIRVSLETYILYALRDVLLKSLSAG 238

Query: 267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCI 326
           T +EDA  NK+IRNL  IQL DL +R DL   V   + E+S +D + T+LGKI C+RR +
Sbjct: 239 TTVEDANLNKIIRNLDGIQLNDLRVRSDLQSRVHGGKMELSRLDSFVTVLGKIECLRRTV 298

Query: 327 SAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQ 386
           + +S    R  L    +T DDLLP+++F +V   L NW+A L +M+QF  S +S    D+
Sbjct: 299 NYVS----RGTLSS--VTSDDLLPVLIFFIVNAGLSNWMAQLYFMRQFRLSTNSAYETDE 352

Query: 387 DSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYN 446
             FLITSLEA+I HIKS ++    +   LMS  ++                         
Sbjct: 353 TGFLITSLEAAIMHIKSEVIYSDDKYNTLMSQSER------------------------- 387

Query: 447 KYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINL 506
                   SS+  LF   + G+  +V+  L   N   + + + LCHPLC+C  CE     
Sbjct: 388 --------SSIGYLFACIKSGNLSEVKRSLTY-NGSNEIDDITLCHPLCTCASCERNWT- 437

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
              Q        DD+G T LHVA L+ +I +VD +L    D N+ D  G + LHY   +G
Sbjct: 438 --KQRDLNACPKDDKGLTPLHVAVLHDQIVIVDFLLNRDTDINAVDSDGLTALHYTCIKG 495

Query: 567 HQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
           HQN+LLL+LH+ A   +TD+ GNT LHLA + GHE CVKAL+Y  E   + +N N  N+ 
Sbjct: 496 HQNILLLMLHANADPAVTDSRGNTPLHLAVDRGHENCVKALLYLTEHMKMPVNANIANDN 555

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPL 686
           GD+PLH AARWGY +I+ +LL++GAN  + NK+  TPL    +  +A+LL          
Sbjct: 556 GDTPLHLAARWGYYAIVDILLEYGANCRMTNKKGQTPLMMTYSETIAELLRCNAASSNIC 615

Query: 687 YNY--LVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLF 744
            N   L P+  V    S    Q +           + N +        N  + + +++L 
Sbjct: 616 NNVASLSPRSFVQPCQSVSFQQQR-------RRVTLENKSPSHPKSYTNAMQHRMMDKLL 668

Query: 745 ALIENNEIKLIKSYFGL----SNEEKVPDNAC-HPLCQCAKCK---EDVVESESRPVTDE 796
           A I +++I L   Y GL         V  + C HPLC C +C    E  +E + R  T  
Sbjct: 669 AAIVDDDICLACYYLGLEIYCERPSGVRTSLCHHPLCDCERCSVLGEGKLERKQRQRT-- 726

Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
            L IN CN  G TALH+A++ G   +V+LL++  A++N++T+ +  TPLH+AC N+ +  
Sbjct: 727 -LAINTCNGLGETALHVASATGRTKMVQLLLDAGANVNVITKSEGRTPLHLACLNDRVDA 785

Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
            +LLL    C+V+A+D +G+T LH A +  +    +LL++ GA   ++N   +T L  A+
Sbjct: 786 AKLLLNCATCDVDAKDRKGDTPLHLATMAGNIKSVSLLIRYGACTNMRNLQNKTPLRQAE 845

Query: 917 QMTSLSL 923
           ++ SL+ 
Sbjct: 846 EVLSLAF 852

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195669|gb|EFN77511.1| Ankyrin repeat domain-containing protein 27 [Harpegnathos saltator]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 327/914 (35%), Positives = 500/914 (54%), Gaps = 65/914 (7%)

Query: 31  YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
           YDEDLSEN F + L+ +H    ++  Q+GWIIC+PR  S     +  ++   H+LIP  +
Sbjct: 3   YDEDLSENEFLQELRQQHAATLQQVIQEGWIICVPRSGSFSNCKIQKDEISAHVLIPRRD 62

Query: 91  LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
           L    F TL+ +E+ + +RI++I+ +    +ST++LFEET+Y +++ KY + CI+ PLD 
Sbjct: 63  LFAAQFDTLDGKEVLLMDRILTIKHNT-QQYSTRLLFEETFYNNDLRKYCIWCIEQPLDT 121

Query: 151 NLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKY 210
           N+  T D   S I  L++ ++ L  E   KE+    +  IK FL  N      P   Q+ 
Sbjct: 122 NMCIT-DTCTSKITNLQEAVNFLQMELLEKELCGDFETKIKDFLCINKDLNCEPVQTQRD 180

Query: 211 LVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALE 270
           LV  LY +CL I L++   R+ +  +++   SI++++ETY+ + +   L+K ++A TA E
Sbjct: 181 LVYDLYTDCLRILLENATSREKVLSSRHYYWSIRVSLETYILYILRHILLKSLSAGTAAE 240

Query: 271 DAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAIS 330
           DA  NK+ RNL++I+L DL IR DL   V   R E+S +DC+ T+LGKI C+RR ++ +S
Sbjct: 241 DASLNKITRNLNEIRLDDLRIRPDLQSCVDGGRLELSRLDCFVTVLGKIECLRRTVNYVS 300

Query: 331 KEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFL 390
           +  +      +I++ DDLLP++++LV+K  L NW A L +M++F FS  S    D+ SFL
Sbjct: 301 RGSS------SIVSSDDLLPVLMYLVIKAGLSNWTAQLAFMQEFRFSAKSVHETDEGSFL 354

Query: 391 ITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNN 450
           ITSLEA+I+HIKSG  I  + P     Y + ++         +    +T +         
Sbjct: 355 ITSLEAAIKHIKSGA-ISRNTP-----YAESKKQTKQDADALIATRSITPEQ-------- 400

Query: 451 YKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQ 510
                S+ +LF     G+  +V  IL  E  K+  ++  LCHPLC+C  CE        Q
Sbjct: 401 ----PSVERLFACIEKGELAEVERILAREESKQPHDA-TLCHPLCTCASCERNWA---RQ 452

Query: 511 SKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNV 570
               T   DDRG T LH+A L  ++ +VD +L+   D N  D  G + LH+A   GHQ +
Sbjct: 453 RDLKTYPKDDRGLTPLHMAVLCNQMTIVDYLLDHDIDINVADSDGLTALHHACIHGHQGI 512

Query: 571 LLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSP 630
           LL +LH+ A   +TD+ GNT LH AT  GHE+CVKAL+Y +EQ  + +++NA N+ GD+ 
Sbjct: 513 LLHMLHANADPTVTDSAGNTPLHCATERGHESCVKALLYLSEQMKVPVDVNASNDNGDTA 572

Query: 631 LHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL 690
           LH AARWGY + +++LL+ GAN  L N++  TPL    + ++AKLL  Y +         
Sbjct: 573 LHLAARWGYVATVRILLECGANCKLTNRKGQTPLTVTYSRYIAKLLEYYAN--------- 623

Query: 691 VPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENN 750
                +    S  P +  +   +   +++ S           ++ E + +++L A I   
Sbjct: 624 -----ICTADSLQPRRATFSSQAAQKQSSQSGA---------SLPEHRAIDRLLAAIVEG 669

Query: 751 EIKLIKSYFGLS-NEEKVPD-------NACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
           +  L   Y GL    E++PD         CHPLC C +C         R      L IN 
Sbjct: 670 DTCLACYYLGLEVYRERLPDVRCAVDGRMCHPLCNCERCSAIGETLLKRCKRRRALPINA 729

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
           CN+ G TALH+A + G  D+VRLL++  A++++ T  +  +PLH+AC N N+  V+LLL 
Sbjct: 730 CNNLGETALHVAAATGRTDMVRLLLDAGANVHMTTVSEGRSPLHLACLNGNVDSVKLLLN 789

Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
              C+V+AQDY GNT+LH      +  L  LLL+ GA    +N +  T L    Q   L 
Sbjct: 790 CATCHVDAQDYDGNTSLHLVTQAGNAKLVGLLLRHGANVDARNRHDMTPL----QQLELE 845

Query: 923 LVRVLTHEAPFVLK 936
           +  VL+     VLK
Sbjct: 846 MSGVLSANYVDVLK 859

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794489|gb|EFZ17542.1| hypothetical protein SINV_01456 [Solenopsis invicta]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 320/909 (35%), Positives = 502/909 (55%), Gaps = 55/909 (6%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           M + YDEDLSEN F + L+ EHG  F++A ++ WI+C+PR  S     L  ++   HIL+
Sbjct: 1   MNAGYDEDLSENRFLRELRDEHGATFKRAVEESWIVCVPRSGSFASRRLREDEINAHILV 60

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
           P  +L    F +L+ +EI + +R++ IE D    +S+++LFEE +Y+D+  K  V CI+ 
Sbjct: 61  PGRDLSVARFNSLSGKEILLKDRVLHIEHDDAERYSSRLLFEEIFYSDDFRKCCVWCIER 120

Query: 147 PLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
           PL+ ++    D  +S +  L++ ++ L  E   K++ +  +  IK FL  N   E     
Sbjct: 121 PLEASMY-VCDNCVSVVTNLQEAMNFLQAELFDKQLRDDFETKIKDFLYINKNLERKSMQ 179

Query: 207 KQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITAC 266
           + + LV +LY +CL +         + S NK    +I++++ETY+ + +   L+K ++AC
Sbjct: 180 EHRDLVHELYADCLEMLENATSRESAASNNKQYQWNIRMSLETYILYTLKDVLLKSLSAC 239

Query: 267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCI 326
           TA+EDA+FNK+IRNL  I+L DL +R DL   +   + E+S +DC+ T+LGKI C+RR +
Sbjct: 240 TAVEDAKFNKIIRNLDGIELSDLRVRPDLQSRIHGGKIELSRLDCFVTVLGKIECLRRTV 299

Query: 327 SAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQ 386
           + +S   +        +T DDLLP++V+LVV   LPNW+A L +M+QF  S SS    D+
Sbjct: 300 NYVSHGTSSS------VTSDDLLPVLVYLVVNAGLPNWMAQLYFMRQFRLSASSAHESDE 353

Query: 387 DSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYN 446
             FLITSLEA+I HIKSG++             D+++ AN   K              YN
Sbjct: 354 TGFLITSLEAAIVHIKSGVIY------------DEDKCANNPDK--------------YN 387

Query: 447 KYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINL 506
              ++ K SS + LF   + G+  +V+ IL  +  K+  + + LCHPLC+C  CE     
Sbjct: 388 PLMSHSKHSSDSYLFTCVKNGNLSEVKRILAYDGSKQ-VDDVTLCHPLCTCASCERNWT- 445

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
              Q        DD+G T LHVA L+ ++ +VD +L+   D N+ D  G + LHYA  +G
Sbjct: 446 --KQRDLNMCPKDDKGMTPLHVAVLHDQLVIVDFLLDRDTDINAVDSDGMTALHYACVKG 503

Query: 567 HQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
           HQN+LLL+LH+ A   +TD  GNT LHLA +  HE CVKAL+Y +E   + +  N  N+ 
Sbjct: 504 HQNILLLMLHANADSAVTDARGNTPLHLAVDRDHENCVKALLYLSEHMRIPVGANVANDN 563

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPL 686
           GD+PLH AARWGY +I+ +LL++G N    NK+  TP     +  +A+LL    +    +
Sbjct: 564 GDTPLHLAARWGYCAIVSILLEYGVNSRTTNKKGQTPSTVTYSETIAELLRC--NAASDV 621

Query: 687 YNYLVPKEK----VSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ 742
            N +    K    V +P    P Q +       + + + N +        N  + + +++
Sbjct: 622 CNDVPALSKRHTFVQQPRQSAPFQQQQQQQQR-HWSTLENKSPSHSKSYTNAMQHRMMDK 680

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNA----C-HPLCQCAKC---KEDVVESESRPVT 794
           L   I + +I L   Y GL    + P  A    C HPLC C +C    E+ +E + R   
Sbjct: 681 LLVAIVDGDICLACYYLGLEVYRERPPGARASLCHHPLCDCERCSAISENKLECKQR--- 737

Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
              L IN  N+ G TALH+A++     +V+LL++  A++N+VT+++  TPLH+AC N+ +
Sbjct: 738 QRVLAINASNNLGETALHVASATDRTKMVQLLLDAGANVNVVTKLESRTPLHLACLNDRV 797

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHM 914
              RLLL    C+V+A+D  GNT LH A +  +     LL++ GA   ++N   +T L  
Sbjct: 798 DSARLLLNCATCDVDAKDRDGNTPLHLATVAGNIKSVGLLVRYGACTGVRNLQNKTPLQQ 857

Query: 915 AQQMTSLSL 923
           A++  S++ 
Sbjct: 858 AEEKLSIAF 866

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170759|gb|EFN62884.1| Ankyrin repeat domain-containing protein 27 [Camponotus floridanus]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 308/852 (36%), Positives = 478/852 (56%), Gaps = 82/852 (9%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           M   YDEDLSEN F + L+ E+   F++  Q+GWIIC+PR  S     L  ++   HILI
Sbjct: 1   MNMKYDEDLSENRFLQELRNEYEATFQQIIQEGWIICVPRSGSFSNRELREDEIKAHILI 60

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
           P ++     F  LN++E+ + +++++I+ +    +ST++LFEE +Y+  +LKY V CI+ 
Sbjct: 61  PKQDFSTARFYNLNNREVLLVDKVLTIKYNDSKQYSTRLLFEEIFYSSNLLKYCVWCIEQ 120

Query: 147 PLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
           PLD ++   +D  ++ I  L++ ++ L TE   K++ + ++  IK FL  N         
Sbjct: 121 PLDASM-CVSDNCVNIITNLQEAVNFLQTE-LDKQLHDNLETKIKDFLCINKNLACKSIQ 178

Query: 207 KQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITAC 266
            Q+ LV++LY +CL + L+   L + +S +K    +IK+++ETY+ + + + L++ ++ C
Sbjct: 179 MQRELVQELYIDCLKMLLEYTALEEKVSGSKQYCSNIKVSLETYILYALREVLLRSLSTC 238

Query: 267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCI 326
           TA+EDA  NK+IRNL  I L DL IR DL   V   + E+S +DCY T+LGKI C+RR +
Sbjct: 239 TAVEDACLNKIIRNLDGILLSDLRIRSDLESRVYGGKMELSRLDCYVTVLGKIECLRRTV 298

Query: 327 SAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQ 386
           + IS   +       +++ DDLLP++VFLVV   L NW A L +MKQF  S SS    D+
Sbjct: 299 NYISHGTS-------VVSSDDLLPILVFLVVNVGLSNWTAQLFFMKQFRLSSSSAYEADE 351

Query: 387 DSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYN 446
             FLITSLEA+IEHIKSG++             D+  +   K+   ++ SD         
Sbjct: 352 TCFLITSLEAAIEHIKSGVICE----------GDKYAINPDKYNQLIDKSD--------- 392

Query: 447 KYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINL 506
                   SS+  LF   + G+  +V  IL  +  K++ + + LCHPLC+C  CE     
Sbjct: 393 -------CSSINYLFACVKNGNLSEVERILTYKRSKQN-DKVSLCHPLCTCASCERNWT- 443

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
           KH +     +  DDRG T LH+A LY +I +VD +L+ GAD N+ DL G +PLHYA  +G
Sbjct: 444 KHRELNECPK--DDRGLTSLHIAVLYDQIVIVDFLLDHGADINAADLDGLTPLHYACVKG 501

Query: 567 HQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
           HQN+LLL+LH+ A   +TD +GNT LHLA + GHE CVKAL+Y +E   +++N NA N+ 
Sbjct: 502 HQNILLLMLHANADPTVTDLQGNTPLHLAVDRGHENCVKALLYLSEHMKISVNPNATNDN 561

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPL 686
           GD+PL+ AA+WGY +I+ +LL++GAN  L NK+  TPL    +  +A+LL  Y      +
Sbjct: 562 GDTPLYLAAKWGYGAIVGILLEYGANCRLINKKGQTPLTVTYSKSIAELLKHYATSANDI 621

Query: 687 YNYLVPKEK--VSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT--EIKKVEQ 742
            N +   +K  V+   S    Q +    SD+   + S+        P+N    + + +++
Sbjct: 622 RNNVALSQKKCVTLAQSQMSFQQRRWTTSDLESLSTSH--------PKNCANPQHRMMDK 673

Query: 743 LFALIENNEIKLIKSYFGLS--NEEKVPDNAC----HPLCQCAKCKEDVVESESRPVTDE 796
           L A I + ++ L   Y GL     E +P +      HPLC C +C               
Sbjct: 674 LLAAIVDGDVCLACYYLGLEVYRSEGLPGSCASLCHHPLCDCERCSA------------- 720

Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINI--------VTRVKQLTPLHIA 848
              ++  + +G T+LH+AT  G+  LV LLI Y A+ NI        + +V++L  L + 
Sbjct: 721 ---LDAKDHNGDTSLHLATVAGNVKLVSLLIRYGANTNIRNALNKSPLRQVEEL-KLSVV 776

Query: 849 CQNNNLSIVRLL 860
              N+ SI+++L
Sbjct: 777 FSTNHASILKIL 788

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390351983|ref|XP_003727786.1| PREDICTED: ankyrin repeat domain-containing protein 27 [Strongylocentrotus purpuratus]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 314/928 (33%), Positives = 511/928 (55%), Gaps = 61/928 (6%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           ME +YDED++EN FF  L+ +H  L+++ATQ  ++IC+PR     + +L+  DF NHIL 
Sbjct: 1   MERSYDEDITENRFFTTLQNKHKHLYQQATQQRFMICVPRTGVFTRISLSQNDFENHILR 60

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
             +E     + TLN ++ ++    I+       + S  ILF+ET+Y      ++VLCID 
Sbjct: 61  QEDEQLSI-YETLNKKKAKVTGIAITTGEGFKESRSVHILFDETFYNANEESFRVLCIDR 119

Query: 147 PLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
            L+    N  D  ++ ++T  DC + LW     K   +K+D+ ++ F  T+ +      D
Sbjct: 120 LLEGGTNNIEDPVLTCLETYEDCCEFLWGNKHSKTSQKKVDDLMEHFCSTSQKA-----D 174

Query: 207 KQKYLVEK---LYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGI 263
             + +++    L+  C+ I LKD  LR ++  N   +D++K+A+ETY+ +GIY  + K +
Sbjct: 175 TLRQIIDATSTLFTKCIQIALKDVVLR-TMQKNAGHMDNLKIAMETYIMNGIYTKVFKAV 233

Query: 264 TACTALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVR 323
           +   A+EDA  NK+ RNLS++Q+KD+ +R +    VPRAR E+S I+ +ST L K+ C+R
Sbjct: 234 SQFYAVEDANLNKITRNLSELQVKDVGVRLEFTTNVPRARREMSTINKFSTPLCKMQCLR 293

Query: 324 RCISAISKEDTRDKL--QGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSN 381
           + + AI+++  R K+      ++ DDLLP++VFLVVK  +PNW+A+L+YM+ F  S   N
Sbjct: 294 KTVLAITQQGFRGKINDSARAMSSDDLLPLLVFLVVKSDIPNWLANLSYMQNFCLS---N 350

Query: 382 VCIDQDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQ 441
               +  F + S+EA++EH+KSG +   S P   +S D                  L  +
Sbjct: 351 FAGGEFGFYMASIEAAVEHVKSGAM-SNSTPATPISIDHSRFSLPPSSPSKSGSEPLWQK 409

Query: 442 LKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCE 501
           +      ++++   ++  LF+    G+ ++V A+L+  +         +CHPLCSCD CE
Sbjct: 410 IDA----SDHENTPAVDILFQRVMEGNKNEVEAMLEASSTDYSWLISKMCHPLCSCDSCE 465

Query: 502 EAINLKHSQSKP-TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLH 560
           + +  K +  +  +  S D+RG T +H AA YG  +V+  ++  G + N  D  G +PLH
Sbjct: 466 QILASKRNDPRAVSASSRDNRGCTPMHAAAAYGHPEVISTLMRRGGEVNVTDYHGSTPLH 525

Query: 561 YAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNI 620
               RGHQ+V LLLL  G+ +++ DN+GN  LHL   NGHE CVKAL+Y + +    ++I
Sbjct: 526 LGCQRGHQDVTLLLLAKGSLVSIEDNDGNRPLHLCCANGHEECVKALLY-STRPSQRVSI 584

Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYV 680
           NA N +GD+ LH A+RWGY +I+ LL+DHGA+    N+R+ T L  ++N+++++ +    
Sbjct: 585 NATNTRGDTALHLASRWGYANIVSLLIDHGASVEARNRRQETALMCSHNINISRTI---- 640

Query: 681 HKPKPLYNYLVPKEK--VSRPPSPPPTQDKYLDYSD----VNEANISNVNVREGVRPRNI 734
                L++     ++  +S   + PP         D    V    +S   + + ++P   
Sbjct: 641 -----LFSTQDESDQGSMSSYATSPPIASILSTLGDEDNQVTPIKVSITKLTKKLQPAQ- 694

Query: 735 TEIKKVEQLFALIENNEIKLIKSYFGL-----------SNEEKVPDNA--CHPLCQCAKC 781
              K+VE+L   + + +I ++K + G             + + +P ++  CHPLCQC+KC
Sbjct: 695 ---KEVEKLLRSVADGDILMMKHHLGWLSDDDYDDDDDEDNDHIPLDSKLCHPLCQCSKC 751

Query: 782 KEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVT-RVK 840
               +  +   V+   L++N  N +GYTALH+A   GH  LV +L+   A +N      +
Sbjct: 752 ---AMLQKRTTVSASGLSVNSRNQEGYTALHVAALHGHEALVDVLLRRGASVNQKNGSSQ 808

Query: 841 QLTPLHIACQNNNLSIV-RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           Q TPLH+ACQ N+  IV +LL  A +CN+  +D RGNT LHY  +N H   A  LL+ GA
Sbjct: 809 QCTPLHLACQCNHPKIVSKLLQHAAKCNI--KDVRGNTPLHYCCLNGHLGPAEALLQHGA 866

Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
                N  G T LH A +     LV++L
Sbjct: 867 NVNQTNQRGNTPLHEAARFNFTPLVKLL 894

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|91089471|ref|XP_968843.1| PREDICTED: similar to VPS9-ankyrin repeat-containing protein [Tribolium castaneum] gi|270011402|gb|EFA07850.1| hypothetical protein TcasGA2_TC005420 [Tribolium castaneum]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 305/893 (34%), Positives = 449/893 (50%), Gaps = 144/893 (16%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
           M   YDE+L  N FF  +   HG+L  KA+Q+ WIIC+PR+  +    +T E   +HIL+
Sbjct: 1   MWQKYDENLHNNPFFHEIIKNHGDLIVKASQEEWIICVPRIGVIDPNEITIETILDHILV 60

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDN 146
           PSE        TL+ +E  I N+ I   +      +  ILFEET+Y ++ LKY V CID+
Sbjct: 61  PSEG------TTLSKKEATIKNKQIVTNST-----TRHILFEETFYIED-LKYTVFCIDS 108

Query: 147 PLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
           PL  +   T    ++ I+TL  CID  W+E+    +  K+      F+  N  F      
Sbjct: 109 PL-FSSRVTCPHVVNKIETLHHCIDFFWSENLS-HVLIKIQRLCASFVDQNRSFCRENLQ 166

Query: 207 KQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITAC 266
            QK L+  LY  CL + L++              D+IKLAVETYM   + + L   I   
Sbjct: 167 NQKDLIGSLYSQCLQLVLRNRGFTDC--------DNIKLAVETYMQSCLDQFLTHAINTV 218

Query: 267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCI 326
           T L D++ NK+IRN S++QLKDL I     D +  A+SE+S I+ Y TIL K+ C++   
Sbjct: 219 TCLHDSELNKIIRNSSELQLKDLSIPPKFCDNITNAKSELSKINNYVTILDKVNCLKL-- 276

Query: 327 SAISKEDTRDKLQGNI-ITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCID 385
                  T   L   I +T DD+L + VFL++K  + NW ++L Y+ QF FS       +
Sbjct: 277 -------TFGHLYTKICLTSDDVLQLFVFLILKLNITNWTSNLIYLTQFQFSSHEP---N 326

Query: 386 QDSFLITSLEASIEHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVY 445
           + +FL+TSLEA++E IKS                  E+ A  K KP              
Sbjct: 327 ESNFLVTSLEAALEFIKS------------------EQFA--KIKPR------------- 353

Query: 446 NKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAIN 505
                     S+T LF+    GD   +R +L  +N   +     LCHPLC CDDC +   
Sbjct: 354 ---------HSVTPLFQTIVTGDLTNLRKLLDVKNSGGN-----LCHPLCDCDDCTKM-- 397

Query: 506 LKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATR 565
                   ++  ++ +G T+L  AAL GR ++V+ +L  GA+ NS D  G S LHYA  +
Sbjct: 398 -------DSSYDINSKGQTLLTFAALLGRSEIVEFLLSKGAEVNSVDYFGRSALHYACLK 450

Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
           GHQ+VLL+L++  A +N+ D++GNT LH+A NNGHE CVKAL Y ++     L+I+ VN 
Sbjct: 451 GHQDVLLILVNCRAEVNVRDHDGNTPLHVACNNGHENCVKALFYASK----GLDIDCVNK 506

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKP 685
            GDSPLH A +W Y  I  +L+++ AN  + N++   P   A N +  +           
Sbjct: 507 HGDSPLHLAVKWNYVGICAVLIENNANVCVTNRKNQLPANLAQNYYTERFF--------- 557

Query: 686 LYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFA 745
                     V +PP      DK+                            KK++ L  
Sbjct: 558 -------PNSVPKPPKDNNRSDKF----------------------------KKIDLLLK 582

Query: 746 LIENNEIKLIKSYFGLSNEEKVP-DNACHPLCQCAKCKEDVVESESRPVTDECLNINICN 804
            IEN+++ L   Y G S        + CHPLC C KC ED+   +   V  E +++N CN
Sbjct: 583 AIENDDLPLTCFYLGFSTSSHYDFQSKCHPLCNCEKC-EDLDTGQDPNV--EYISVNACN 639

Query: 805 SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAK 864
            DG+T LH A   G  +L+R+L++  A  N+ T     TPLH+AC +  +S+V+ L+   
Sbjct: 640 IDGFTPLHFAAKFGRTELLRILLDSGALPNLKTLKTLQTPLHLACIHQQVSVVKELVKCA 699

Query: 865 QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
            C V++QDY GNT L+YA + N   +  +LL +GA   I++ YG + +   Q+
Sbjct: 700 NCEVDSQDYYGNTPLYYACVRNDAKIVEVLLTNGANADIRD-YGNSIIKQVQE 751

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281339121|gb|EFB14705.1| hypothetical protein PANDA_004160 [Ailuropoda melanoleuca]

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 304/898 (33%), Positives = 483/898 (53%), Gaps = 64/898 (7%)

Query: 31  YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
           YDEDL +N F+ AL+    +L  K  Q   I+ +P   SL     +   F ++ILIP EE
Sbjct: 4   YDEDLLKNPFYLALQKWRPDLCNKVAQTHGIVLVPCKGSLSSSVQSTCQFESYILIPVEE 63

Query: 91  LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
               HF+TLN +++ I    I + A      S  ILFEET+Y ++   + +LCI +PL+ 
Sbjct: 64  ----HFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLEK 119

Query: 151 NLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKY 210
              +   ++ S+  TL+   D+   E  G+   E+ D +I  F  T  + E     +   
Sbjct: 120 RESSEEPSTSSDPFTLKTIEDV--REFLGRHA-ERFDRSIASFRRTFRECERKSLRQHID 176

Query: 211 LVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALE 270
            V  LY  CL   L+D+ L+  ++  +  ++ +K AVE Y+ H IY  + K +    A E
Sbjct: 177 SVNALYTKCLQQLLRDSHLKM-LAKQEAQMNLLKQAVEMYVQHDIYDLIFKYVGTIEASE 235

Query: 271 DAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAIS 330
           DA FNK+ R+L D+Q KD+ ++ +    +PRA+ E++ ++  ++   K+ C+R+ +  I+
Sbjct: 236 DAAFNKITRSLQDLQQKDIGVKPECSFNIPRAKRELAQLNKCTSPQQKLICLRKVVRLIT 295

Query: 331 KEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFL 390
           +  ++ ++    +  DDLL ++++L+VK  +PNW+A+L+Y+K F FS S+    D+  + 
Sbjct: 296 QSPSQ-RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSSAK---DELGYC 351

Query: 391 ITSLEASIEHIKSGLL-IGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYN 449
           +TS+EA+IE+I+ G L + P E E    + D+  L          MS L+          
Sbjct: 352 LTSIEAAIEYIRQGSLSVKPPESEG---FGDRLFLKQ-------RMSLLSQMTS------ 395

Query: 450 NYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK-H 508
                + +  LF+    G+  +V  +L ++++ +D+    +CHPLC CDDCE+ ++ + +
Sbjct: 396 -----TPIDCLFKHIAAGNQKEVERLLSQDDQDKDAIQR-MCHPLCFCDDCEKLVSGRLN 449

Query: 509 SQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ 568
             S  T  S DDRG T LHVAAL G+  ++DL++  GA  N+ D  G +PLH A  +G+Q
Sbjct: 450 DPSIVTPFSRDDRGHTPLHVAALCGQASLIDLLVSRGAVVNATDYHGSAPLHLACQKGYQ 509

Query: 569 NVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGD 628
           +V LLLLH  AS  + DN GNT LHLA   GHE CVKAL+Y++ Q   +  ++  N +GD
Sbjct: 510 SVTLLLLHYKASPEVQDNNGNTPLHLACTYGHEDCVKALVYYDLQ---SCRLDIGNEKGD 566

Query: 629 SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYN 688
           +PLH AARWGY  II+ LL +GA+  ++N+ K TPL+ A N  +  ++ A+ H P     
Sbjct: 567 TPLHIAARWGYQGIIETLLQNGASTEIQNRLKETPLKCALNSKILSIMEAH-HLP----- 620

Query: 689 YLVPKEKVSRPPSPPPTQ--DKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL 746
            L  + + S  P  PP +  D     S  +  +    + R+   P+   + ++VE+L   
Sbjct: 621 -LERRRRSSEVPVQPPQRPVDSISQASSTSSFSSVLASSRQE-EPKK--DYREVEKLLRA 676

Query: 747 IENNEIKLIKSYFGLSNEE--------KVPD-NACHPLCQCAKCKEDVVESESRPVTDEC 797
           + + ++++++     + E+         V D   CHPLCQC KC     +    P +   
Sbjct: 677 VADGDLEMVRYLLEWTEEDLDELEDAVSVADVEFCHPLCQCPKCAPAQKKLAKIPASG-- 734

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           L +N+ N DG + LH+A   G  DL+ LL+ + AD      V Q  PLH+ACQ  +  +V
Sbjct: 735 LGVNVTNQDGSSPLHVAALHGRVDLIPLLLKHGADAG-ARNVDQAVPLHLACQKGHFQVV 793

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           R LL +     N +D  GNT L YA  N H  +A LLL+ GA   I N+ G T LH A
Sbjct: 794 RYLLDSN-AKPNKKDVSGNTPLIYACSNGHHEVAALLLQHGASINISNNKGNTALHEA 850

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	936
UNIPROTKB|F1NGS0	981	ANKRD27 "Uncharacterized prote	0.476	0.454	0.371	2.7e-126
UNIPROTKB|F1RNY3	1056	ANKRD27 "Uncharacterized prote	0.467	0.414	0.368	7.7e-123
UNIPROTKB|F1N642	1048	ANKRD27 "Uncharacterized prote	0.517	0.461	0.348	1.4e-122
UNIPROTKB|Q96NW4	1050	ANKRD27 "Ankyrin repeat domain	0.467	0.417	0.361	2.6e-120
MGI|MGI:2444103	1048	Ankrd27 "ankyrin repeat domain	0.467	0.417	0.355	3.6e-115
UNIPROTKB|F1PYJ6	1044	ANKRD27 "Uncharacterized prote	0.392	0.351	0.324	1.9e-92
RGD|1307106	377	Ankrd27 "ankyrin repeat domain	0.384	0.954	0.310	4e-45
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.487	0.242	0.306	1.6e-36
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.487	0.245	0.306	4.3e-36
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.487	0.237	0.306	4.5e-36

UNIPROTKB|F1NGS0 ANKRD27 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 754 (270.5 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
 Identities = 180/484 (37%), Positives = 268/484 (55%)

Query:   460 LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK-HSQSKPTTQSM 518
             LF+    G+ ++V  +L + +  +D+    +CHPLC CD CE+ ++ K +  S  T  S 
Sbjct:   410 LFKHIASGNQEEVERLLSQGDSDKDTVQ-KMCHPLCYCDKCEKLVSGKLNDPSIITPFSR 468

Query:   519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
             DDRG+T LH+AA+ G+  +VDL++  GA  N+ D  G +PLH A  +G+QNV LLLLH  
Sbjct:   469 DDRGYTPLHIAAICGQTSLVDLLVAKGAIVNATDYHGSTPLHLACQKGYQNVTLLLLHYK 528

Query:   579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             AS ++ DN GNT LHLA   GHE CVKAL+Y+   +V +  ++  N +GD+PLH AARWG
Sbjct:   529 ASTDVQDNNGNTPLHLACTYGHEDCVKALVYY---DVHSCRLDIGNEKGDTPLHIAARWG 585

Query:   639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK--EKV 696
             Y  II++LL +GANP  +N+ K T LQ A N  +  L+           NYL  +  +  
Sbjct:   586 YQGIIEVLLQNGANPNTQNRMKETSLQCALNSKILSLMEL---------NYLTFERGQSA 636

Query:   697 SRPP--SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKL 754
             S  P  SP  + + +   S V+  + ++++ R+    +N    K+VE+L   + + ++++
Sbjct:   637 SESPLRSPQHSTETFSRGSSVSSLSSASIDTRQD-EAKN--SYKEVEKLLRAVADGDLEM 693

Query:   755 IKSYFGLSNE--EKVPDNA-------CHPLCQCAKCKEDVVESESRPVTDECLNINICNS 805
             ++     + E  E   D         CHPLCQC+KC     + +   V    L +N+ N 
Sbjct:   694 VRYLLEWTEEDLEDEDDTVSTSKPEFCHPLCQCSKCGP--AQKKFARVPANGLGVNVSNQ 751

Query:   806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA--A 863
             DG+T LH+A   GH DLV LL+ + A I+     +   PLH+ACQ  +  +V  L+   A
Sbjct:   752 DGFTPLHMAALHGHSDLVSLLLKHGASIS-AKNAEHAVPLHLACQKGHSQVVECLMDYNA 810

Query:   864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
             KQ   N +D  GNT L YA +N H     LLL+ GA   + N  G T LH A    + +L
Sbjct:   811 KQ---NKKDAYGNTPLIYACLNGHYETTALLLQHGASVNLSNAKGNTALHEAVIGKNEAL 867

Query:   924 VRVL 927
             V +L
Sbjct:   868 VDLL 871

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IEA

UNIPROTKB|F1RNY3 ANKRD27 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 729 (261.7 bits), Expect = 7.7e-123, Sum P(2) = 7.7e-123
 Identities = 173/470 (36%), Positives = 260/470 (55%)

Query:   460 LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK-HSQSKPTTQSM 518
             LF+    G+  +V  +L +E++ +D+    +CHPLC CDDCE+ ++ + +  S  T  S 
Sbjct:   401 LFQHIASGNQKEVERLLSQEDQDKDAVQ-KMCHPLCFCDDCEKLVSGRLNDPSVVTPFSR 459

Query:   519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLHS 577
             DDRG T LHVAAL G+  ++D ++  GA  N+ D  G SPLH A  +G+Q+V  LLLLH 
Sbjct:   460 DDRGHTPLHVAALCGQASLIDFLVSKGAVVNATDYHGSSPLHLACQKGYQSVTKLLLLHY 519

Query:   578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
              A+  + DN GNT LHLA   GHE CVKAL+Y++ Q    L+I   N +GD+PLH AARW
Sbjct:   520 KANAQVQDNNGNTPLHLACTYGHEDCVKALVYYDVQSC-RLDIG--NEKGDTPLHIAARW 576

Query:   638 GYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVS 697
             GY  II+ LL +GA+  ++N+ K TPLQ A N  +  ++ A  H+          ++K S
Sbjct:   577 GYQGIIETLLQNGASTEIQNRLKETPLQCALNSKILSVMEA--HQLS-----FEKRQKSS 629

Query:   698 RPPSPPP--TQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLI 755
               P+ PP  + D     S  +  + ++++ R    P+   + ++VE+L   + + +++++
Sbjct:   630 EVPARPPKGSTDSSNQGSPASGFSSTSLSSRRE-EPKK--DYREVEKLLRAVADGDLEMV 686

Query:   756 KSYFGLSNEE--KVPDNA--------CHPLCQCAKCKEDVVESESRPVTDECLNINICNS 805
             +     + E+  +  D A        CHPLCQC KC     +    P +   L++N+ N 
Sbjct:   687 RYLLEWTEEDLDEAEDAAVGAAELEFCHPLCQCPKCAPAQKKLAKIPASG--LSVNVTNQ 744

Query:   806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
             DG + LHIA   G  DL+ LL+ + A +       Q  PLH+ACQ  +  +V+ LLA+  
Sbjct:   745 DGSSPLHIAALHGRADLLLLLLKHGASVG-ARDANQAVPLHLACQKGHFQVVKCLLASN- 802

Query:   866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
                N +D  GNT L YA    H  +A LLL+ GA     N+ G T LH A
Sbjct:   803 AKPNKKDLSGNTPLIYACSRGHHEVAALLLQHGASINTSNNKGNTALHEA 852

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1N642 ANKRD27 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 732 (262.7 bits), Expect = 1.4e-122, Sum P(2) = 1.4e-122
 Identities = 179/513 (34%), Positives = 271/513 (52%)

Query:   413 EALMSYDDQEELANAKFKPTVEMSDLTTQLKVXXXXXXXXXISSLTKLFEFARLGDGDKV 472
             EA + Y  Q  L+    KP  E       LK           + +  LF+    G+  +V
Sbjct:   356 EAAIEYIRQGSLS---VKPESEGFGDRLFLKQRMSLLSQLTSTPIDCLFQHIASGNQKEV 412

Query:   473 RAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK-HSQSKPTTQSMDDRGFTVLHVAAL 531
               +L +E++ +D+    +CHPLC CDDCE+ ++ + +  S  T  S DDRG T LHVAAL
Sbjct:   413 ERLLSQEDQDKDAVQ-KMCHPLCFCDDCEKLVSGRLNDPSVVTPFSRDDRGHTPLHVAAL 471

Query:   532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTA 591
              G+  ++DL++  GA  N+ D  G +PLH A  +G+Q+V LLL+H  AS  + DN GNT 
Sbjct:   472 CGQASLIDLLVSKGAVVNATDYHGSTPLHLACQKGYQSVTLLLMHYKASAEVQDNNGNTP 531

Query:   592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
             LHLA   GHE CVKAL+YF+ Q    L+I   N +GD+PLH AARWGY  II+ LL +GA
Sbjct:   532 LHLACTYGHEDCVKALVYFDVQ-ACRLDIG--NEKGDTPLHIAARWGYQGIIETLLQNGA 588

Query:   652 NPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLD 711
             +  ++N+ K TPL+ A N  +  ++ A+ H     +       +VS   +P  + D    
Sbjct:   589 STEIQNRLKETPLKCALNSKILSIMEAH-HLS---FERRQKSSEVS-VQAPQCSMDSISQ 643

Query:   712 YSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEE--KVPD 769
              S  +  +  +++ R+   P+   + ++VE+L   + + ++++++     + E+  +  D
Sbjct:   644 GSSTSSFSSVSLSSRQD-DPKK--DYREVEKLLRAVADGDLEMVRYLLEWTEEDLDEAED 700

Query:   770 NA-------CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDL 822
                      CHPLCQC KC     +    PV+   L +N+ N DG + LH+A   G  DL
Sbjct:   701 AVGAVDLEFCHPLCQCPKCAPAQKKLAKIPVSG--LGVNVTNQDGSSPLHVAALHGRADL 758

Query:   823 VRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA 882
             + LL+ + A +       Q  PLH+ACQ  +  +V+ LL +     N +D  GNT L YA
Sbjct:   759 ILLLVKHGASVG-ARDASQAVPLHLACQQGHFQVVKCLLESN-AKPNKKDISGNTPLIYA 816

Query:   883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
                 H  +A LLL+ GA     N+ G T LH A
Sbjct:   817 CSRGHHEVAALLLQHGASINASNNKGNTALHEA 849

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q96NW4 ANKRD27 "Ankyrin repeat domain-containing protein 27" [Homo sapiens (taxid:9606)]

 Score = 719 (258.2 bits), Expect = 2.6e-120, Sum P(2) = 2.6e-120
 Identities = 169/468 (36%), Positives = 250/468 (53%)

Query:   460 LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK-HSQSKPTTQSM 518
             LF+    G+  +V  +L +E+  +D+    +CHPLC CDDCE+ ++ + +  S  T  S 
Sbjct:   401 LFKHIASGNQKEVERLLSQEDHDKDTVQ-KMCHPLCFCDDCEKLVSGRLNDPSVVTPFSR 459

Query:   519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
             DDRG T LHVAA+ G+  ++DL++  GA  N+ D  G +PLH A  +G+Q+V LLLLH  
Sbjct:   460 DDRGHTPLHVAAVCGQASLIDLLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYK 519

Query:   579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             AS  + DN GNT LHLA   GHE CVKAL+Y+ + E   L+I   N +GD+PLH AARWG
Sbjct:   520 ASAEVQDNNGNTPLHLACTYGHEDCVKALVYY-DVESCRLDIG--NEKGDTPLHIAARWG 576

Query:   639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSR 698
             Y  +I+ LL +GA+  ++N+ K TPL+ A N  +  ++ AY H           ++K S 
Sbjct:   577 YQGVIETLLQNGASTEIQNRLKETPLKCALNSKILSVMEAY-HLS------FERRQKSSE 629

Query:   699 PP--SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK 756
              P  SP  + D     S  +  +  + + R+    ++  E   VE+L   + + ++++++
Sbjct:   630 APVQSPQRSVDSISQESSTSSFSSMSASSRQEETKKDYRE---VEKLLRAVADGDLEMVR 686

Query:   757 SYFGLSNE--EKVPDNA-------CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDG 807
                  + E  E   D         CHPLCQC KC     +     V    L +N+ + DG
Sbjct:   687 YLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAP--AQKRLAKVPASGLGVNVTSQDG 744

Query:   808 YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCN 867
              + LH+A   G  DL+ LL+ + A+        Q  PLH+ACQ  +  +V+ LL +    
Sbjct:   745 SSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSN-AK 802

Query:   868 VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
              N +D  GNT L YA    H  L  LLL+ GA     N+ G T LH A
Sbjct:   803 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 850

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0045022 "early endosome to late endosome transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=IDA

MGI|MGI:2444103 Ankrd27 "ankyrin repeat domain 27 (VPS9 domain)" [Mus musculus (taxid:10090)]

 Score = 682 (245.1 bits), Expect = 3.6e-115, Sum P(2) = 3.6e-115
 Identities = 166/467 (35%), Positives = 256/467 (54%)

Query:   460 LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLK-HSQSKPTTQSM 518
             LF+    G+  +V  +L ++++ +D+    +CHPLCSC+DCE+ I+ + +  S  T  S 
Sbjct:   401 LFKHIASGNQKEVERLLSQDDQDKDAMQ-KMCHPLCSCEDCEKLISGRLNDPSVVTPFSR 459

Query:   519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
             DDRG T LHVAAL G+  ++D ++  GA  N+ D  G +PLH A  +G Q+V LLLLH  
Sbjct:   460 DDRGQTPLHVAALCGQASLIDFLVSKGAVVNATDYHGSTPLHLACQKGFQSVTLLLLHYK 519

Query:   579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             AS  + DN GNT LHLA   G E CVKAL+Y++ Q    L+I   N +GD+ LH AARWG
Sbjct:   520 ASTEVQDNNGNTPLHLACTYGQEDCVKALVYYDVQ-ACRLDIG--NEKGDTALHIAARWG 576

Query:   639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSR 698
             Y  II+ LL +GA   ++N+ K TPL+ A N  +  ++ A+ H    L +   P+   S 
Sbjct:   577 YEGIIETLLQNGAPTAVQNRLKETPLKCALNSKILSIMEAH-H----LSSDRRPRP--SE 629

Query:   699 PPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT-EIKKVEQLFALIENNEIKLIKS 757
              P+  PT+         + ++ S+++V    R   +  + ++VE+L   + + ++++++ 
Sbjct:   630 VPAQSPTRSVDSISQGSSTSSFSSISV--SFRQEEVKKDYREVEKLLRAVADGDLEMVRY 687

Query:   758 YFGLSNEE--KVPD-------NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGY 808
                 + ++   V D         CHPLCQC KC     +  +R ++   L++N+ N DG+
Sbjct:   688 LLEWTEDDLDDVEDAISTVDLEFCHPLCQCPKCAP--AQKLAR-ISANGLSVNVTNQDGF 744

Query:   809 TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
             + LH+A   G  DLV LL+ + A  +      Q  PLH+ACQ  +  + + LL +     
Sbjct:   745 SPLHMAALHGRTDLVPLLLKHGA-YSGARNTSQAVPLHLACQQGHFQVAKCLLDSN-AKP 802

Query:   869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
             N +D  GNT L  A    H  +A LLL+ GA     N+ G T LH A
Sbjct:   803 NKKDLSGNTPLICACSAGHHEVAALLLQHGASINACNNKGNTALHEA 849

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0045022 "early endosome to late endosome transport" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|F1PYJ6 ANKRD27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 1.9e-92, Sum P(3) = 1.9e-92
 Identities = 126/388 (32%), Positives = 217/388 (55%)

Query:    31 YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
             YDEDL +N F+ AL+    +L  K  Q   I+ +P   SL     +   F ++ILIP EE
Sbjct:     4 YDEDLLKNPFYLALQKWRPDLCSKVAQIHGIVLVPCKGSLSSSVQSTCQFESYILIPVEE 63

Query:    91 LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
                 HF+TLN +++ I    I + A      S  ILFEET+Y ++   + +LCI +PL+ 
Sbjct:    64 ----HFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLE- 118

Query:   151 NLENTNDASISN----IQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
               E++ + S S+    ++T+ D  + L     G+   E+ D +I  F  T  + E     
Sbjct:   119 KRESSEEPSTSSDPFSLKTIEDVREFL-----GRHA-ERFDRSIASFQRTFRECERKSLR 172

Query:   207 KQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITAC 266
             +    V  LY  CL   L+D+ L+  ++  +  ++ +K AVE Y+ H IY  + K +   
Sbjct:   173 QHIDSVNALYTKCLQQLLRDSHLKM-LAKQEAQMNLLKQAVEMYVQHDIYDLIFKYVGTM 231

Query:   267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCI 326
              A EDA FNK+ R+L D+Q KD+ ++ +    +PRA+ E++ ++  ++   K+ C+R+ +
Sbjct:   232 EASEDAAFNKITRSLQDLQQKDIGVKPECSFNIPRAKRELAQLNKCTSPQQKLICLRKVV 291

Query:   327 SAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQ 386
               I++  ++ ++    +  DDLL ++++L+VK  +PNW+A+L+Y+K F FS S+    D+
Sbjct:   292 QLITQSPSQ-RVNLETMCADDLLSVLLYLLVKTDIPNWMANLSYIKNFRFSSSAK---DE 347

Query:   387 DSFLITSLEASIEHIKSGLL-IGPSEPE 413
               + +TS+EA+IE+I+ G L + P E E
Sbjct:   348 LGYCLTSIEAAIEYIRQGSLSVKPPESE 375

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

RGD|1307106 Ankrd27 "ankyrin repeat domain 27 (VPS9 domain)" [Rattus norvegicus (taxid:10116)]

 Score = 483 (175.1 bits), Expect = 4.0e-45, P = 4.0e-45
 Identities = 118/380 (31%), Positives = 206/380 (54%)

Query:    31 YDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILIPSEE 90
             YDEDL  N F+ AL+    +L  K  Q   I+ +P   SLP        F +++L+P E 
Sbjct:     4 YDEDLLRNPFYLALQKWRPDLCSKVAQIHGIVLVPCRGSLPSNVQASCQFESYVLVPMEG 63

Query:    91 LPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLKYKVLCIDNPLDI 150
                 HF+TL+ + + I    + + A      S  ILFEET+Y ++   + +LCI +PL+ 
Sbjct:    64 ----HFQTLDGKAVLIEGNRVKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLE- 118

Query:   151 NLENTNDASISN----IQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFD 206
               E + + S  +    ++T++D  + L   S      E+ D+ I  F  T  + E     
Sbjct:   119 KRETSEEPSAPSDPFSLKTIKDVREFLGRHS------ERFDKHIASFHRTFRECERKSLR 172

Query:   207 KQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITAC 266
                  V  LY  CL   L+D+ L+  ++  +  ++ +K AVE Y+HH IY  + K +   
Sbjct:   173 HLIDSVNALYTKCLQQLLRDSHLKV-LAKQEAQMNLMKQAVEMYVHHDIYDLIFKYVGTM 231

Query:   267 TALEDAQFNKMIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCI 326
              A EDA FNK+ R+L D+Q KD+ ++ +    +PRA+ E+  ++  ++   K+ C+R+ +
Sbjct:   232 EASEDAAFNKITRSLQDLQQKDIGVKPEFSFNIPRAKRELGQLNKCTSPQQKLLCLRKVV 291

Query:   327 SAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQ 386
               +++  ++ ++    +  DDLL ++++L+VK  +PNW+A+L+Y+K F FS S     D+
Sbjct:   292 QLMTQSPSQ-RVNLETVCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSSPK---DE 347

Query:   387 DSFLITSLEASIEHIKSGLL 406
               + +TS+EA+IE+I+ G L
Sbjct:   348 LGYCLTSVEAAIEYIRQGSL 367

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0045022 "early endosome to late endosome transport" evidence=ISO

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 432 (157.1 bits), Expect = 1.6e-36, P = 1.6e-36
 Identities = 154/502 (30%), Positives = 245/502 (48%)

Query:   464 ARLGDG-DKVRAILQEENKKEDS--ESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDD 520
             A  GD  D VR +LQ + + +D   + L   H    C     A  L    +KP +++++ 
Sbjct:   312 AAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALN- 370

Query:   521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
              GFT LH+A     ++V++L+L+ GA  ++    G +PLH A+  GH  ++  LL  GAS
Sbjct:   371 -GFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGAS 429

Query:   581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
              N+++ +  T LH+A   GH    K L+  N+ +V   N  A ++Q  +PLH AAR G+T
Sbjct:   430 PNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV---NAKAKDDQ--TPLHCAARIGHT 483

Query:   641 SIIQLLLDHGANPTLENKRKVTPLQ-NANNLHVAKLL--------NAYVHKP--KPLY-- 687
             ++++LLL++ ANP L      TPL   A   HV  +L         A + K    PL+  
Sbjct:   484 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 543

Query:   688 -NY---LVPKEKVSRPPSPPPTQDKYLDYSDV----NEANISNVNVREGVRPRNITEIKK 739
               Y    V +  + R   P       L    V    N  +I  + +  G  P +      
Sbjct:   544 AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNG 602

Query:   740 VEQLFALIENNEIKLIKS---YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDE 796
                L    + N++++ +S   Y G +N E V      PL   A+  E   E  +  ++ +
Sbjct:   603 YTPLHIAAKQNQVEVARSLLQYGGSANAESV--QGVTPLHLAAQ--EGHAEMVALLLSKQ 658

Query:   797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
               N N+ N  G T LH+    GH  +  +LI +   ++  TR+   TPLH+A    N+ +
Sbjct:   659 A-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKL 716

Query:   857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
             V+ LL   Q +VNA+   G + LH AA   HT++ TLLLK+GA P   +  G T L +A+
Sbjct:   717 VKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 775

Query:   917 QMTSLSL---VRVLTHEAPFVL 935
             ++  +S+   ++V+T E  FVL
Sbjct:   776 RLGYISVTDVLKVVTDETSFVL 797

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 428 (155.7 bits), Expect = 4.3e-36, P = 4.3e-36
 Identities = 154/502 (30%), Positives = 244/502 (48%)

Query:   464 ARLGDG-DKVRAILQEENKKEDS--ESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDD 520
             A  GD  D VR +LQ   + +D   + L   H    C     A  L    +KP +++++ 
Sbjct:   306 AAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALN- 364

Query:   521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
              GFT LH+A     I+V++L+L+ GA  ++    G +PLH A+  GH  ++  LL  GAS
Sbjct:   365 -GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGAS 423

Query:   581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
              N+++ +  T LH+A   GH    K L+  N+ +V   N  A ++Q  +PLH AAR G+T
Sbjct:   424 PNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV---NAKAKDDQ--TPLHCAARIGHT 477

Query:   641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL------NAYVHKP--KPLY-- 687
             ++++LLL++ ANP L      TPL  A     +  A  L       A + K    PL+  
Sbjct:   478 NMVKLLLENNANPNLATTAGHTPLHIAAREGQVETALALLEKEASQACMTKKGFTPLHVA 537

Query:   688 -NY---LVPKEKVSRPPSPPPTQDKYLDYSDV----NEANISNVNVREGVRPRNITEIKK 739
               Y    V +  + R   P       L    V    N  +I  + +  G  P +      
Sbjct:   538 AKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHNHLDIVRLLLPRGGSPHS-PAWNG 596

Query:   740 VEQLFALIENNEIKLIKS---YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDE 796
                L    + N++++ +S   Y G +N E V      PL   A+  E   E  +  ++ +
Sbjct:   597 YTPLHIAAKQNQMEVARSLLQYGGSANAESV--QGVTPLHLAAQ--EGHAEMVALLLSKQ 652

Query:   797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
               N N+ N  G T LH+    GH  +  +LI +   ++  TR+   TPLH+A    N+ +
Sbjct:   653 A-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGY-TPLHVASHYGNIKL 710

Query:   857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
             V+ LL   Q +VNA+  +G + LH AA   HT++ TLLLK+GA P   +  G T L +A+
Sbjct:   711 VKFLLQ-HQADVNAKTKQGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAK 769

Query:   917 QMTSLSL---VRVLTHEAPFVL 935
             ++  +S+   ++V+T E  FVL
Sbjct:   770 RLGYISVTDVLKVVTDEPSFVL 791

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 428 (155.7 bits), Expect = 4.5e-36, P = 4.5e-36
 Identities = 154/502 (30%), Positives = 244/502 (48%)

Query:   464 ARLGDG-DKVRAILQEENKKEDS--ESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDD 520
             A  GD  D VR +LQ   + +D   + L   H    C     A  L    +KP +++++ 
Sbjct:   316 AAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALN- 374

Query:   521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
              GFT LH+A     I+V++L+L+ GA  ++    G +PLH A+  GH  ++  LL  GAS
Sbjct:   375 -GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGAS 433

Query:   581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
              N+++ +  T LH+A   GH    K L+  N+ +V   N  A ++Q  +PLH AAR G+T
Sbjct:   434 PNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV---NAKAKDDQ--TPLHCAARIGHT 487

Query:   641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL------NAYVHKP--KPLY-- 687
             ++++LLL++ ANP L      TPL  A     +  A  L       A + K    PL+  
Sbjct:   488 NMVKLLLENNANPNLATTAGHTPLHIAAREGQVETALALLEKEASQACMTKKGFTPLHVA 547

Query:   688 -NY---LVPKEKVSRPPSPPPTQDKYLDYSDV----NEANISNVNVREGVRPRNITEIKK 739
               Y    V +  + R   P       L    V    N  +I  + +  G  P +      
Sbjct:   548 AKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHNHLDIVRLLLPRGGSPHS-PAWNG 606

Query:   740 VEQLFALIENNEIKLIKS---YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDE 796
                L    + N++++ +S   Y G +N E V      PL   A+  E   E  +  ++ +
Sbjct:   607 YTPLHIAAKQNQMEVARSLLQYGGSANAESV--QGVTPLHLAAQ--EGHAEMVALLLSKQ 662

Query:   797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
               N N+ N  G T LH+    GH  +  +LI +   ++  TR+   TPLH+A    N+ +
Sbjct:   663 A-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGY-TPLHVASHYGNIKL 720

Query:   857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
             V+ LL   Q +VNA+  +G + LH AA   HT++ TLLLK+GA P   +  G T L +A+
Sbjct:   721 VKFLLQ-HQADVNAKTKQGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAK 779

Query:   917 QMTSLSL---VRVLTHEAPFVL 935
             ++  +S+   ++V+T E  FVL
Sbjct:   780 RLGYISVTDVLKVVTDEPSFVL 801

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96NW4	ANR27_HUMAN	No assigned EC number	0.3292	0.8867	0.7904	yes	N/A
Q3UMR0	ANR27_MOUSE	No assigned EC number	0.3207	0.8835	0.7891	yes	N/A
Q5REW9	ANR27_PONAB	No assigned EC number	0.3274	0.8878	0.7914	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	936
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-11
pfam02204	104	pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9)	6e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	9e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-05
smart00248	30	smart00248, ANK, ankyrin repeats	9e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	4e-04
smart00167	117	smart00167, VPS9, Domain present in VPS9	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-04
smart00248	30	smart00248, ANK, ankyrin repeats	9e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.003
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  129 bits (325), Expect = 5e-35
 Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 2/127 (1%)

Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  + DG T LH+A S GH ++V+LL+   AD+N      + TPLH+A +N +L IV+LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR-TPLHLAAKNGHLEIVKLL 59

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
           L     +VNA+D  GNT LH AA N + ++  LLLK GA    ++  G+T LH+A +   
Sbjct: 60  LEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

Query: 921 LSLVRVL 927
           L +V++L
Sbjct: 119 LEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  126 bits (319), Expect = 4e-34
 Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 6/129 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+ G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  ++ LLL  G
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  D +GNT LHLA  NG+   VK L+          ++NA +  G +PLH AA+ G
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH------GADVNARDKDGRTPLHLAAKNG 117

Query: 639 YTSIIQLLL 647
           +  +++LLL
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  121 bits (306), Expect = 2e-32
 Identities = 57/131 (43%), Positives = 77/131 (58%), Gaps = 9/131 (6%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           N++D  G +PLH AA+ GH  V+ LLL +GA +N  DN+G T LHLA  NGH   VK L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
                     ++NA +  G++PLH AAR G   +++LLL HGA+    +K   TPL  A 
Sbjct: 61  EKGA------DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA 114

Query: 668 --NNLHVAKLL 676
              +L V KLL
Sbjct: 115 KNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (264), Expect = 9e-27
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 2/101 (1%)

Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
           +   ++N  ++DG T LH+A   GH ++V+LL+   AD+N   +    TPLH+A +N NL
Sbjct: 28  ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGN-TPLHLAARNGNL 86

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
            +V+LLL     +VNA+D  G T LH AA N H  +  LLL
Sbjct: 87  DVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  102 bits (255), Expect = 2e-25
 Identities = 44/91 (48%), Positives = 59/91 (64%)

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
            D+ G T LH+AA  G +++V L+LE GAD N++D  G +PLH AA  G+ +V+ LLL  
Sbjct: 36  KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALI 608
           GA +N  D +G T LHLA  NGH   VK L+
Sbjct: 96  GADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNA 870
           LH+A   G+ +LV+LL+   AD+N+       T LH+A +N NL IV+LLL     +VNA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAARNGNLEIVKLLLEHG-ADVNA 56

Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           +D  GNTALH AA N +  +  LLL+ GA   +K+
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 8/99 (8%)

Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
           LH AA  G+  ++ LLL  GA +NL D   +TALHLA  NG+   VK L+   E      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLL---EHGA--- 52

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN 657
           ++NA +  G++ LH AAR G   I++LLL+HGA+  L++
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.6 bits (210), Expect = 8e-20
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD 585
           LH+AA  G +++V L+LE GAD N  D    + LH AA  G+  ++ LLL  GA +N  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 586 NEGNTALHLATNNGHETCVKALI 608
            +GNTALHLA  NG+   VK L+
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 845 LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK 904
           LH+A +N NL +V+LLL  K  +VN  D   +TALH AA N +  +  LLL+ GA    K
Sbjct: 1   LHLAAKNGNLELVKLLLE-KGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 905 NHYGQTCLHMAQQMTSLSLVRVL 927
           +  G T LH+A +  +L +V++L
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 79.1 bits (194), Expect = 2e-16
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
              ++   + DG   LH A S G   +V+LL+   AD+N        TPLH+A  N N  
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGD-TPLHLAALNGNPP 120

Query: 856 -----IVRLLLA--AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
                + +LLL   A     N +D  GNT LH+AA+N   ++  LLL++GA P  +N YG
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYG 180

Query: 909 QTCLHMAQQMTSLSLVRVL 927
            T L  A +   + LV++L
Sbjct: 181 VTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 74.5 bits (182), Expect = 8e-15
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 9/181 (4%)

Query: 502 EAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHY 561
            A+ L  S             +  L +       ++  L L +     ++DL G  PLH 
Sbjct: 21  VALLLLLSLDLSNPSDKKLNLYLELALLPAASLSEL-LLKLIVDRHLAARDLDGRLPLHS 79

Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHET-----CVKALIYFNEQEVL 616
           AA++G   ++ LLL SGA +N  D +G+T LHLA  NG+         K L+        
Sbjct: 80  AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--- 136

Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676
               N  +  G++PLH AA  G   I++LLL+ GA+P   N   VT L  A      +L+
Sbjct: 137 LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELV 196

Query: 677 N 677
            
Sbjct: 197 K 197

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
           T LH+AA  G +++V L+LE GAD N++D  G + LH AA  G+  ++ LLL  GA INL
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Query: 584 TD 585
            D
Sbjct: 90  KD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 77.0 bits (190), Expect = 1e-14
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 20/136 (14%)

Query: 799 NINICNSDGYTALHIA--TSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA--CQNNNL 854
           N+N  +++G T L  A       Y +V  L++  A++NI         LH+       +L
Sbjct: 98  NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDL 156

Query: 855 SIVRLL---------------LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            I++LL               L +    +N +D  G T LHYA  NN+      LL  GA
Sbjct: 157 KILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216

Query: 900 RPQIKNHYGQTCLHMA 915
            P + N YG T LH+A
Sbjct: 217 NPNLVNKYGDTPLHIA 232

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 17/159 (10%)

Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATR--GHQNVLLLLLHSGASINLTDNEGNTAL 592
            ++V L+LE GA+ N+ D  G +PL YA ++     +++  LL +GA++N+ +++G   L
Sbjct: 86  KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145

Query: 593 HLATNNGH------ETCVKALIYFNEQEVLNL------NINAVNNQGDSPLHAAARWGYT 640
           HL   +        +  +   +  N +  +N        IN  +  G +PLH A      
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             ++ LLD GANP L NK   TPL  A   NN  + KLL
Sbjct: 206 EFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 75.1 bits (185), Expect = 6e-14
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 522 GFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ-NVLLLLLHS 577
           G T LH+   Y       +V L+LE GAD N+ + CG +PLH         +V+ LL+ +
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 578 GASINLTDNEGNTALH--LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
           GA +N  D  G T LH  L+  N +   ++ L+          ++NA++  G +PL    
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK------GADVNALDLYGMTPLAVLL 160

Query: 636 RWGYTSI--IQLLLDHGANPT 654
           +    ++  ++LL+D GA+  
Sbjct: 161 KSRNANVELLRLLIDAGADVY 181

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 74.2 bits (182), Expect = 9e-14
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)

Query: 537 VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT 596
           ++  +L+ G D N +D    + LHYA  +G    + +L   GA +N+ D+ G   +H+A 
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165

Query: 597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLE 656
            +     +K L+    ++    N+   +N G+SPLH AA +G  + I+LL+DHG +   +
Sbjct: 166 KHNFFDIIKLLL----EKGAYANVK--DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Query: 657 NKRKVTPLQNA 667
            K   TPL NA
Sbjct: 220 CKNGFTPLHNA 230

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 4/74 (5%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N+ ++D  TALH+A   G+ ++V+LL+ + AD+N   +    T LH+A +N NL IV+
Sbjct: 22  DVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDGN-TALHLAARNGNLEIVK 78

Query: 859 LLLAAKQCNVNAQD 872
           LLL     ++N +D
Sbjct: 79  LLL-EHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 69.6 bits (170), Expect = 3e-12
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 19/171 (11%)

Query: 499 DCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSP 558
           DC   +N+K ++ K           T LH A   G ++ + ++ E GAD N +D  GC P
Sbjct: 112 DCGIDVNIKDAELK-----------TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP 160

Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
           +H A      +++ LLL  GA  N+ DN G + LH A   G   C+K LI          
Sbjct: 161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN------ 214

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
           +I      G +PLH A      S I+LL+++ A+   ++    TPL +A N
Sbjct: 215 HIMNKCKNGFTPLHNAIIHN-RSAIELLINN-ASINDQDIDGSTPLHHAIN 263

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 65.2 bits (158), Expect = 1e-11
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 10/166 (6%)

Query: 475 ILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR 534
           I+       D +     H   S  D +    L  S +    +  D  G T LH+AAL G 
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD--GDTPLHLAALNGN 118

Query: 535 -----IKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDN 586
                I+V  L+LE GAD    N +D  G +PLH+AA  G  +++ LLL +GA  N  ++
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS 178

Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH 632
            G TAL  A  NG    VK L+       L           +    
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKR 224

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 798 LNINICNSDGYTALHIA-----TSLGHYDLVRLLINYRADINIVTR--VKQLTPLHIACQ 850
            ++N  ++DG T LH+A        G+ ++ +LL+   AD+++         TPLH A  
Sbjct: 97  ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL 156

Query: 851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
           N +  IV LLL A   + N+++  G TAL  AA N    L  LLL  G
Sbjct: 157 NGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 67.8 bits (165), Expect = 2e-11
 Identities = 84/359 (23%), Positives = 155/359 (43%), Gaps = 54/359 (15%)

Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL 594
           + + +++LE GAD N++D+   +P+HYAA RG+  ++ LLL  GA +N+   +  + L  
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 595 ATNNGHETCVKAL------IYFNEQEVLN-----------------LNINAVNNQGDSPL 631
           A ++ +   +KA+      I  N+  +L                   ++N++++  ++PL
Sbjct: 218 AVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPL 277

Query: 632 HAAARW-GYTSIIQLLLDHGANPTLENKRKVTPL-------QNANNLHVAKLLNAYVHKP 683
           H A++    + ++  LL+ GA+   +N +  TPL        +  N+    +L A V+  
Sbjct: 278 HHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA 337

Query: 684 KPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQL 743
             LY           P     T D+  D         +NVN R+           K    
Sbjct: 338 DRLYI---------TPLHQASTLDRNKDIVITLLELGANVNARD--------YCDKTPIH 380

Query: 744 FALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINIC 803
           +A + NN + +I +      + +            A C  +   S  + + D   N+N  
Sbjct: 381 YAAVRNN-VVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS-VKTLIDRGANVNSK 438

Query: 804 NSDGYTALHIATSLG-HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
           N D  T LH A       D++ +L++  AD+N +  ++   PL IA + +   IV +LL
Sbjct: 439 NKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAIN-IQNQYPLLIALEYH--GIVNILL 494

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 11/88 (12%)

Query: 592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
           LHLA  NG+   VK L+   E+     ++N  +   D+ LH AAR G   I++LLL+HGA
Sbjct: 1   LHLAAKNGNLELVKLLL---EKGA---DVNLGDT--DTALHLAARNGNLEIVKLLLEHGA 52

Query: 652 NPTLENKRKVTPLQNA---NNLHVAKLL 676
           +   ++K   T L  A    NL + KLL
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           + LH AA  G   ++  LL  G  IN TD +GNTALH+A  NG+   +K L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|216928 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 24/104 (23%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 300 PRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKC 359
            +A+ E+  ++   +   K+ C+ R    I+ E       G  +  DDLLP+++++++K 
Sbjct: 2   EKAQEELKKLNEAKSPREKLKCLLRTCKLIT-EALSKSNPGEPLGADDLLPILIYVLIKA 60

Query: 360 ALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKS 403
             PN  ++L ++  F   +  ++   ++ + +T+LEA++E I++
Sbjct: 61  NPPNLYSNLQFISLF---RDPDLLSGEEGYYLTTLEAALEFIEN 101

Length = 104

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.0 bits (159), Expect = 9e-11
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 518 MDDRGFTVLHVAALYG--------RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
            +D    ++  AALY          ++ V  +L  GAD N +   G +PLH       + 
Sbjct: 2   EEDESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEK 61

Query: 570 ---VLLLLLHSGASINLTDNEGNTALHL-ATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
              ++ LLL +GA +N  +  G T LHL   N      +K LI          ++NA + 
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK------AGADVNAKDK 115

Query: 626 QGDSPLHAAAR--WGYTSIIQLLLDHGANPTLENKRKVTPL 664
            G +PLH           +I+LLL  GA+    +   +TPL
Sbjct: 116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPL 156

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 64.9 bits (158), Expect = 1e-10
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 523 FTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
             +L VA+  G   +++ +L+   D +  D  G +PLH AA++G+++ +L+LL    +++
Sbjct: 527 SNLLTVAST-GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH 585

Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642
           + D  GNTAL  A +  H    + L +F        +I+  +  GD  L  AA+    + 
Sbjct: 586 IRDANGNTALWNAISAKHHKIFRILYHFA-------SISDPHAAGDL-LCTAAKRNDLTA 637

Query: 643 IQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           ++ LL  G N   E+ +  T LQ A   +++ + +LL
Sbjct: 638 MKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN 597
             ++L  GAD N +D  G +PLH A   GH  V+ +LL  GA   L D +G T L LA  
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 598 NGHETCVKALIYFNEQEVLNLNINAV--------NNQGDSPLHAAA 635
           NG    V+ L   + Q    L  NA          +  DSP+ +  
Sbjct: 158 NGFREVVQLLSRHS-QCHFELGANAKPDSFTGKPPSLEDSPISSHH 202

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 540 LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
           L+     D N+ D  G +PLH AA  G   ++  LL  G  +NL D++G TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
           G T LH AA+ GR+++V  +LE G D N  D  G + LH AA  G+  VL LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.4 bits (152), Expect = 5e-10
 Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 26/154 (16%)

Query: 519 DDRGFTVLHVAALY--GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNV----LL 572
           D+ G T L  A         +V+ +L+ GA+ N ++  G + LH        ++    LL
Sbjct: 103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLL 162

Query: 573 L--------------LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
           +              LL  G  IN+ D  G T LH A  N +   VK L+       L  
Sbjct: 163 IDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD------LGA 216

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
           N N VN  GD+PLH A       I +LLL++G +
Sbjct: 217 NPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.7 bits (153), Expect = 5e-10
 Identities = 76/352 (21%), Positives = 118/352 (33%), Gaps = 78/352 (22%)

Query: 569 NVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL------NINA 622
             +  LL +GA +N     G T LHL  +   E            +++ L      ++NA
Sbjct: 28  EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVK---------DIVRLLLEAGADVNA 78

Query: 623 VNNQGDSPLHAAARWGYT-SIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVH 681
               G +PLH       T  +I+LL+  GA+   ++K   TPL          L    ++
Sbjct: 79  PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLH-------VYLSGFNIN 131

Query: 682 KPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVE 741
               +   L+ K                   +DVN  ++  +                  
Sbjct: 132 --PKVIRLLLRKG------------------ADVNALDLYGMT----------------- 154

Query: 742 QLFALIENNEIK------LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTD 795
            L  L+++          LI +   +   +    +  H   Q  K +  +V    R   D
Sbjct: 155 PLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD 214

Query: 796 ECLNINICNSDGYTALHIA---TSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
                   +  G T LH     +S     ++ LLI     IN   R  Q TPLH A   N
Sbjct: 215 P----AATDMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQ-TPLHYAAVFN 268

Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK 904
           N    R L+A    ++NA    GNT L     NN+       L     P  +
Sbjct: 269 NPRACRRLIALG-ADINAVSSDGNTPLSLMVRNNNGRAVRAALAK--NPSAE 317

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
             T LH A  +  L +V+ LL  K  ++N  D  GNTALH AA N +  +  LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 62.2 bits (151), Expect = 7e-10
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880
           ++ +LL++Y ADIN+  R K  T LH A +N +  +  LLL +   NVN  D   N+ LH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLH 206

Query: 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           +A  + +  +  +LL++GA    ++  G T LH++
Sbjct: 207 HAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 62.2 bits (151), Expect = 7e-10
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 14/152 (9%)

Query: 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
            +G T LH A      ++ +L+L  GA+ N  D    SPLH+A    ++ ++ +LL +GA
Sbjct: 166 HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGA 225

Query: 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ----GDSPLHAAA 635
           S +  D  GNT LH++        V     ++  ++L  +   VN +    G + LH++ 
Sbjct: 226 STDARDKCGNTPLHIS--------VGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI 277

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
           +      ++LLL++GA+    N  K+TPL +A
Sbjct: 278 K--SERKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.0 bits (151), Expect = 8e-10
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 519 DDRGFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
           D  G T LH  A      R  V+ L++  G   N+++  G +PLHYAA   +      L+
Sbjct: 219 DMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLI 277

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALI 608
             GA IN   ++GNT L L   N +   V+A +
Sbjct: 278 ALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL 310

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 24/124 (19%)

Query: 521 RGFTVLHVAALYGRIKV------------------VDLVLELGADTNSQDLCGCSPLHYA 562
            G  +LH+     +I +                  V+ +L  G   N +D+ G +PLHYA
Sbjct: 140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199

Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
               +   +  LL  GA+ NL +  G+T LH+A  N ++   K L+          +I  
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP------SIKT 253

Query: 623 VNNQ 626
           +   
Sbjct: 254 IIET 257

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 14/116 (12%)

Query: 807 GYTALHIATSLGHY------DLVRLLINYRADINIVTRVKQLTPLHIACQNNN-LSIVRL 859
           G T LH      HY      D+VRLL+   AD+N   R    TPLH+   N   L +++L
Sbjct: 47  GKTPLH---LYLHYSSEKVKDIVRLLLEAGADVNAPERCG-FTPLHLYLYNATTLDVIKL 102

Query: 860 LLAAKQCNVNAQDYRGNTALH-YAA-INNHTNLATLLLKSGARPQIKNHYGQTCLH 913
           L+ A   +VNA+D  G T LH Y +  N +  +  LLL+ GA     + YG T L 
Sbjct: 103 LIKAG-ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA 157

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 60.7 bits (147), Expect = 2e-09
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
           + D  +++NI +++  T LH A   G  + +++L  Y AD+NI        P+HIA ++N
Sbjct: 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-EDDNGCYPIHIAIKHN 168

Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912
              I++LLL  K    N +D  G + LH AA         LL+  G     K   G T L
Sbjct: 169 FFDIIKLLL-EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL 227

Query: 913 HMA 915
           H A
Sbjct: 228 HNA 230

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
           G TALH A   G  +LV+ L+    DIN        T LHIA +N NL +++LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 59.7 bits (145), Expect = 4e-09
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 799 NINICNSDGYTALHI-ATSLG-HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN--L 854
           ++N  +  G T LH+  +    +  ++RLL+   AD+N    +  +TPL +  ++ N  +
Sbjct: 109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANV 167

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATL--LLKSGARPQIKNHYGQTCL 912
            ++RLL+ A   +V A D R  + LH+   +       +  L+++G  P   +  G T L
Sbjct: 168 ELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Query: 913 HMAQQMTS 920
           H     +S
Sbjct: 227 HSMATGSS 234

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 21/56 (37%), Positives = 27/56 (48%)

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           LL     ++NA D  GNT LH AA      L   LLK G    +++  G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 58.9 bits (143), Expect = 7e-09
 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 34/179 (18%)

Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH-----QNVLLLLLHSGAS 580
           L++A     I VV ++L+ GAD NS      +PLHY +   +     + ++ LLL  GA+
Sbjct: 39  LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98

Query: 581 INLTDNEGNTALHLATNN--GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           +N  DN G T L  A +      + V+ L+          N+N  N+ G++ LH      
Sbjct: 99  VNAPDNNGITPLLYAISKKSNSYSIVEYLL------DNGANVNIKNSDGENLLHLYLESN 152

Query: 639 Y--TSIIQLLLDHGAN---------------PTLE-NKRKVTPLQNA---NNLHVAKLL 676
                I++LL+D G +               P    +    TPL  A   NN    K L
Sbjct: 153 KIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHI----ATSLGHYDLVRLLINY 829
           PL        + V+   R + +   ++N     G+T LH+    AT+L   D+++LLI  
Sbjct: 50  PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTL---DVIKLLIKA 106

Query: 830 RADINIVTRVKQLTPLHIACQNNNL--SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH 887
            AD+N   +V + TPLH+     N+   ++RLLL     +VNA D  G T L     + +
Sbjct: 107 GADVNAKDKVGR-TPLHVYLSGFNINPKVIRLLLRKG-ADVNALDLYGMTPLAVLLKSRN 164

Query: 888 TNLATL--LLKSGARPQIKNHYGQTCLH 913
            N+  L  L+ +GA     +   ++ LH
Sbjct: 165 ANVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 826 LINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA 882
           L+ +       T     TPLH+A +   L +V+ LL     ++N +D  G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 804 NSDGYTALHIATSLGHYD---LVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  G   +HI ++    D    ++LL+ + ADIN   RV   TPLHIA    N  +   L
Sbjct: 52  NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
                 N+   +Y   T  + A   +   +  +L   GA+
Sbjct: 112 CNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151

Length = 154

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.8 bits (135), Expect = 7e-08
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 799 NINICNSDGYTALHIATSLGHYD--LVRLLINYRADINIVTRVKQLTPLHIACQN--NNL 854
           ++N  +  G T L +     + +  L+RLLI+  AD+      +  + LH   Q+     
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRA 202

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINN---HTNLATLLLKSGARPQIKNHYGQTC 911
            IVR L+ A  C+  A D  GNT LH  A  +    + +  LL+  G     +N YGQT 
Sbjct: 203 RIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTP 260

Query: 912 LHMA 915
           LH A
Sbjct: 261 LHYA 264

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 10/151 (6%)

Query: 534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH 593
           ++K +  ++      +        PL+ A    + +V+ +LL +GA IN +    +T LH
Sbjct: 14  KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH 73

Query: 594 LATNNGH-ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA--RWGYTSIIQLLLDHG 650
             +N  +  T VK ++    +     N+NA +N G +PL  A   +    SI++ LLD+G
Sbjct: 74  YLSNIKYNLTDVKEIVKLLLE--YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131

Query: 651 ANPTLENKRKVTPL-----QNANNLHVAKLL 676
           AN  ++N      L      N  +L + KLL
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLL 162

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.0 bits (132), Expect = 1e-07
 Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 12/174 (6%)

Query: 442 LKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEEN------KKEDSESLPLCHPLC 495
           L  +    + K     ++L +    GD   V  +L           K+    L L   L 
Sbjct: 54  LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113

Query: 496 SCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCG 555
             D  +  I        P T    D+ F+ LH+A + G IK ++L+++  A  + +D CG
Sbjct: 114 KLDIMKLLIARGADPDIPNT----DK-FSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168

Query: 556 CSPLHYAATRGHQNVLLLLLHSGASINLTDNEGN-TALHLATNNGHETCVKALI 608
           C+PL  A  +G   +  +LL SGA+I+     G   AL  A  N     V+  I
Sbjct: 169 CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTR 838
           DG T LH+A   GH ++V+LL+   AD+N   +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 27/154 (17%)

Query: 799 NINICNSDGYTALHIATSLGHY-----DLVRLLINYRADINIVTRVKQLTPLHIACQN-- 851
           +IN    +  T LH  +++ +      ++V+LL+ Y A++N       +TPL  A     
Sbjct: 60  DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKS 118

Query: 852 NNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATL------------------ 893
           N+ SIV  LL     NVN ++  G   LH    +N  +L  L                  
Sbjct: 119 NSYSIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNY 177

Query: 894 LLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LL  G    IK+ YG T LH A    +   V+ L
Sbjct: 178 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 518 MDDRGFTVLHVAALYGR--IKVVDLVLELGADTNSQDLCGCSPLHYAA--TRGHQNVLLL 573
           +D  G T L V        ++++ L+++ GAD  + D    S LH+     +    ++  
Sbjct: 148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRE 207

Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL--NLNINAVNNQGDSPL 631
           L+ +G     TD  GNT LH        +C ++L+      +L   ++INA N  G +PL
Sbjct: 208 LIRAGCDPAATDMLGNTPLHSMAT--GSSCKRSLV----LPLLIAGISINARNRYGQTPL 261

Query: 632 HAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA--NNLHVA 673
           H AA +      + L+  GA+    +    TPL     NN   A
Sbjct: 262 HYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRA 305

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 54.5 bits (131), Expect = 2e-07
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH----PLCQCAKCKEDVVESESR 791
           EI +++     +E  E K       L+ EE +     H     LCQ A   + V    +R
Sbjct: 43  EIARIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAV---GAR 99

Query: 792 PVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQN 851
            +     + N  + DG T LHIA + GH  +VR+L+ + AD  ++ +  + TPL +A +N
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK-TPLELAEEN 158

Query: 852 NNLSIVRLLLAAKQCNVNA 870
               +V+LL    QC+   
Sbjct: 159 GFREVVQLLSRHSQCHFEL 177

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            INI +  G+T LH A    + + V+ L++  A+ N+V      TPLHIA  NNN  I +
Sbjct: 184 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN-KYGDTPLHIAILNNNKEIFK 242

Query: 859 LLL 861
           LLL
Sbjct: 243 LLL 245

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
            G++PLH AAR G+  +++LLL+ GA+    +K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 783 EDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL 842
           + ++ +    ++ +  N +    + Y  L +  +    +L+  LI  R            
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDG--R 74

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN-----LATLLLKS 897
            PLH A    +  IV+LLLA+   +VNA+D  G+T LH AA+N +       +A LLL++
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGA-DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 898 GARPQI---KNHYGQTCLHMAQQMTSLSLVRVL 927
           GA   +   ++  G T LH A       +V +L
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELL 166

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
             N+ + DG T LH A   G  D+V LL+   AD N        T L  A +N  + +V+
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV-TALDPAAKNGRIELVK 197

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           LLL         +      A    +  N  NL +L++ 
Sbjct: 198 LLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 28/110 (25%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880
           D+++ +++   D+NI    +  T LH A +  +L  +++L      +VN +D  G   +H
Sbjct: 105 DMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIH 162

Query: 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR-VLTH 929
            A  +N  ++  LLL+ GA   +K++ G++ LH A +    + ++ ++ H
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH 212

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.4 bits (125), Expect = 1e-06
 Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 798 LNINICNSDGYTALHIATSLGHYDL--VRLLINYRADINIVTRVKQLTPLHIAC---QNN 852
            ++N  N  G T L++    G YD   +R LI   AD+N   R+  +TPLH A    +N 
Sbjct: 298 ADVNAKNIKGETPLYLMAKNG-YDTENIRTLIMLGADVNAADRL-YITPLHQASTLDRNK 355

Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912
           ++ I  L L A   NVNA+DY   T +HYAA+ N+  +   LL  GA  +  +    T L
Sbjct: 356 DIVITLLELGA---NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTAL 412

Query: 913 HMA 915
           H A
Sbjct: 413 HFA 415

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           G TALH AAI+    L   LL+ G      +  G T LH+A +  +L ++++L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
           G TALH A  +G    VK L+         ++IN  +  G++ LH AA  G   +++LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLE------KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 573 LLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH 632
           LL H    +N TD  GNT LHLA   G    V+ L+         +++N  ++ G + L 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL------KPGVDLNLRDSDGLTALD 54

Query: 633 AA 634
            A
Sbjct: 55  LA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 11/137 (8%)

Query: 526 LHVAALYGRIKVVDLVLELGA---DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
           LH A   G +K V+ +L+LG    D   +D  G +PLH A      +++ LL+  GA  +
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIMKLLIARGADPD 129

Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642
           + + +  + LHLA   G    ++ LI  + +  L++     +  G +PL  A   G  +I
Sbjct: 130 IPNTDKFSPLHLAVMMGDIKGIELLI--DHKACLDIE----DCCGCTPLIIAMAKGDIAI 183

Query: 643 IQLLLDHGANPTLENKR 659
            ++LLD GAN     K 
Sbjct: 184 CKMLLDSGANIDYFGKN 200

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDN 586
           G +PLH AA  GH  V+ LLL +GA +N  D 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 4e-06
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 29/158 (18%)

Query: 533 GRIKVVDLVLELGADTNSQDLCGCSPLHYA-ATRGHQNVLLLL----------------- 574
           G  K+V+L ++ GAD N  +     PL  A     H  + LL+                 
Sbjct: 46  GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD 105

Query: 575 -----LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS 629
                L  G  +N+ D E  T LH A   G    +K L  +      ++NI   N  G  
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA----DVNIEDDN--GCY 159

Query: 630 PLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
           P+H A +  +  II+LLL+ GA   +++    +PL NA
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNA 197

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.6 bits (121), Expect = 4e-06
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 41/161 (25%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN----------------------- 834
           L+ +I +S G T LHIA S G+ D V +L+ +  +++                       
Sbjct: 549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFR 608

Query: 835 IVTRVKQLTPLHI-------ACQNNNLSIVRLLLAAKQ-CNVNAQDYRGNTALHYAAINN 886
           I+     ++  H        A + N+L+ ++ LL  KQ  NV+++D++G TAL  A   +
Sbjct: 609 ILYHFASISDPHAAGDLLCTAAKRNDLTAMKELL--KQGLNVDSEDHQGATALQVAMAED 666

Query: 887 HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           H ++  LL+ +GA             +     +   L  +L
Sbjct: 667 HVDMVRLLIMNGA--------DVDKANTDDDFSPTELRELL 699

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
           GNT LH AA N H  +  LLL++GA    ++ 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)

Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           +I N+D ++ LH+A  +G    + LLI+++A ++I       TPL IA    +++I ++L
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI-EDCCGCTPLIIAMAKGDIAICKML 187

Query: 861 LAAKQCNVNAQDYRGN-TALHYAAINNHTNLATLLLKSGARPQI 903
           L +   N++     G   AL YA  NN  ++  L +K GA   I
Sbjct: 188 LDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA 562
           D  G T LH+AA YG +++V  +L+ G D N +D  G + L  A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINI 835
           DG T LH+A   G+ +LV+LL+ + ADIN 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  GFT LH A      + V  +L+LGA+ N  +  G +PLH A    ++ +  LLL++G
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Query: 579 ASIN 582
            SI 
Sbjct: 249 PSIK 252

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQD 872
           TPLH+A +N +L +V+LLL A   +VNA+D
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAG-ADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 77/347 (22%), Positives = 142/347 (40%), Gaps = 75/347 (21%)

Query: 573 LLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH 632
           ++ + G  IN++ +E  T L  A  +G    V+  I           IN +N +   PL 
Sbjct: 20  IIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD------INHINTKIPHPLL 73

Query: 633 AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVP 692
            A + G   II+LL+D+G + +      + P+       +  +L+  +            
Sbjct: 74  TAIKIGAHDIIKLLIDNGVDTS------ILPIPCIEKDMIKTILDCGI------------ 115

Query: 693 KEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEI 752
                                        +VN+++        E+K    L   I+  ++
Sbjct: 116 -----------------------------DVNIKD-------AELKTF--LHYAIKKGDL 137

Query: 753 KLIKSYFGLSNEEKVPD-NACHPLCQCAKCKE-DVVESESRPVTDECLNINICNSDGYTA 810
           + IK  F    +  + D N C+P+    K    D++    + + ++    N+ +++G + 
Sbjct: 138 ESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDII----KLLLEKGAYANVKDNNGESP 193

Query: 811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNA 870
           LH A   G Y  ++LLI++   I    +    TPLH A  +N  S + LL+     ++N 
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAIIHNR-SAIELLI--NNASIND 249

Query: 871 QDYRGNTALHYAAINN--HTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           QD  G+T LH+ AIN     ++  +LL   A   IK++ G+  +  A
Sbjct: 250 QDIDGSTPLHH-AINPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G + LH AA  G   +++ LL+ G +    ++   T L  A    NL V KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D +G T LH+AA  G    V ++L+   + + +D  G + L  A +  H  +  +L H  
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA 614

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           +  +   +     L  A      T +K L+         LN+++ ++QG + L  A    
Sbjct: 615 SISD--PHAAGDLLCTAAKRNDLTAMKELLK------QGLNVDSEDHQGATALQVAMAED 666

Query: 639 YTSIIQLLLDHGANPTLEN 657
           +  +++LL+ +GA+    N
Sbjct: 667 HVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA 848
           ++N  + +G T LH+A   G  +LV+ L+    D+N+       T L +A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G + + +A  +   + + L+++ GA  + +     S LH A   G    +  LL  G   
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94

Query: 582 N-LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
           + +   +G T LHLAT       +K LI          + +  N    SPLH A   G  
Sbjct: 95  DDVFYKDGMTPLHLATILKKLDIMKLLIARGA------DPDIPNTDKFSPLHLAVMMGDI 148

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             I+LL+DH A   +E+    TPL  A    ++ + K+L
Sbjct: 149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML 187

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850
           R + D  +N N    DG + + +A      + ++LL+ + A  + V      + LH A +
Sbjct: 19  RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVE 77

Query: 851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT 910
             ++  V  LL   +   +     G T LH A I    ++  LL+  GA P I N    +
Sbjct: 78  EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFS 137

Query: 911 CLHMAQQMTSLSLVRVL 927
            LH+A  M  +  + +L
Sbjct: 138 PLHLAVMMGDIKGIELL 154

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 66/283 (23%), Positives = 103/283 (36%), Gaps = 50/283 (17%)

Query: 408 GPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQLKVYNKYNNYKKIS-------SLTKL 460
           GP +          +E     F P  E  DL +   VY      KK++         + L
Sbjct: 2   GPLDIVPAEESPLSDE--EKAFLPAAERGDLAS---VYRDLEEPKKLNINCPDRLGRSAL 56

Query: 461 FEFARLGDGDKVRAILQEENKK-EDSESLPLCHPLCSCDDCEEAINLK---HSQSKPTTQ 516
           F  A   +  ++  +L   + +    ++L     L   D  E  +        +S P   
Sbjct: 57  FVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLEL 116

Query: 517 SMDD------RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGC-------------- 556
           + D        G T LH+AA     ++V L+LE GA   ++                   
Sbjct: 117 ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR--ACGDFFVKSQGVDSFYH 174

Query: 557 --SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT-NNGHETCVKALIYFNEQ 613
             SPL+ AA  G  +++ LL    A I   D+ GNT LHL    N  +   + L      
Sbjct: 175 GESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYN 234

Query: 614 EVLNLNINA---------VNNQGDSPLHAAARWGYTSIIQLLL 647
             L+L             +N+QG +PL  AA+ G   + +L L
Sbjct: 235 FALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL 277

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
            +++NA +  G++PLH AA++G   ++Q LL  G +  L +   +T L  A
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNN---LSIVRLLLAAKQCNVNAQDYRGNT 877
           + VR L+   AD+N      + TPLH+    ++     IVRLLL A   +VNA +  G T
Sbjct: 28  EEVRRLLAAGADVNFRGEYGK-TPLHLYLHYSSEKVKDIVRLLLEAG-ADVNAPERCGFT 85

Query: 878 ALHYAAINNHT-NLATLLLKSGARPQIKNHYGQTCLH 913
            LH    N  T ++  LL+K+GA    K+  G+T LH
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLH 122

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.1 bits (109), Expect = 7e-05
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)

Query: 811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNA 870
           LH A   G    V  L++     + V     +TPLH+A     L I++LL+A    + + 
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG-ADPDI 130

Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +    + LH A +        LL+   A   I++  G T L +A     +++ ++L
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML 187

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQD 552
           G T LH+AA  G ++VV L+LE GAD N++D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 460 LFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAIN--LKHSQSKPTTQS 517
           L   A+ G+ + V+ +L++       ++    H L + +   E +   L+H        +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALH-LAARNGNLEIVKLLLEHGADV---NA 56

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD 552
            D  G T LH+AA  G +++V L+LE GAD N +D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINI 835
           DG T LH+A   G+ ++V+LL++  ADIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 71/337 (21%), Positives = 129/337 (38%), Gaps = 40/337 (11%)

Query: 601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660
           ET +K + Y +  E  + + + +      PLH A       +++ LL  G N    + R 
Sbjct: 14  ETILKYIEYIDHTENYSTSASLIPF---IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRD 70

Query: 661 VTPLQNA----NNLHVAKLLNAYVHKPKPLYNYLVPKEK-------------VSRPPSPP 703
           +TPL       N L + +++ +   K    Y  +  K+               +R  +  
Sbjct: 71  LTPLHIICKEPNKLGMKEMIRSIN-KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQ 129

Query: 704 PTQDKYL---DYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFG 760
                Y+      D+ EA I+ + +  G         K    L    EN + +L +    
Sbjct: 130 TIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS 189

Query: 761 LSNEEKVPDNA-CHPLCQCAK-CKEDVVESESRPVTDECLNINICNSDGYTALHIATS-L 817
                 +PD     PL    K   + +V      + +   + +  +  G T LHI+    
Sbjct: 190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHI----LLENGASTDARDKCGNTPLHISVGYC 245

Query: 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT 877
             YD+++LL+ +  D+N  + +  LT LH + ++     ++LLL     ++N+ +    T
Sbjct: 246 KDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYG-ADINSLNSYKLT 302

Query: 878 AL-----HYAAINNHTNLAT-LLLKSGARPQIKNHYG 908
            L      Y  IN    L + + L    +P IKN  G
Sbjct: 303 PLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEG 339

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG-HQNVLLLLLHSG 578
             GFT LH A ++ R   ++L++   A  N QD+ G +PLH+A       +++ +LL+  
Sbjct: 221 KNGFTPLHNAIIHNR-SAIELLIN-NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHK 278

Query: 579 ASINLTDNEGNTALHLA 595
           A I++ DN+G   +  A
Sbjct: 279 ADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 14/93 (15%)

Query: 807 GYTALHIATSLGHYDLVRLLINYRADINI-----VTRVKQLT--------PLHIACQNNN 853
           G TALH+A    +Y++V+LL+   A +            Q          PL+ A    +
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886
            SIV LL      ++   D  GNT LH   + N
Sbjct: 188 PSIVALLSE-DPADILTADSLGNTLLHLLVMEN 219

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 516 QSMDDRGFTVLHVAAL----YGRIKVVDLVLELGADTNSQD-LCGCSPLHYAAT-RGHQN 569
            + DD G   +H+AA         +++D ++ELGAD N+Q+ L G + LH AA  R H  
Sbjct: 54  NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDL 113

Query: 570 VLLLLLHSGASINLTDNEGNTALHLATNN 598
              L    G  ++  + +  +   LA +N
Sbjct: 114 AEWLCCQPGIDLHFCNADNKSPFELAIDN 142

Length = 169

>gnl|CDD|128469 smart00167, VPS9, Domain present in VPS9

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 299 VPRARSEISHIDCYSTILGKIGCVRRCISAI--SKEDTRDKLQGNIITVDDLLPMIVFLV 356
           V   + E+  +  Y +   KI C+ R    I    E    ++ G     DD LP++++++
Sbjct: 2   VEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVAGA----DDFLPVLIYVI 57

Query: 357 VKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHIKS 403
           +KC   + + +  YM++F      ++   +  + +TSL A++  IK 
Sbjct: 58  IKCDPRDLLLNAEYMEEF---LEPSLLTGEGGYYLTSLSAALALIKG 101

Domain present in yeast vacuolar sorting protein 9 and other proteins. Length = 117

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
            R+LL     + N +DY G T LH A  N H  +  +LL+ GA P + +  G+T L +A+
Sbjct: 98  ARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE 156

Query: 917 QMTSLSLVRVL 927
           +     +V++L
Sbjct: 157 ENGFREVVQLL 167

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLI 827
           ++IN  + DG TALHIA   G+ ++++LL+
Sbjct: 25  VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYA--ATRGHQNVLLLLLHSGASI 581
           T +H AA+   + +++ +L+ GAD  +      + LH+A   T  + +V   L+  GA++
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSV-KTLIDRGANV 435

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  + + +T LH A     +  V  ++  N  +V     NA+N Q   PL  A    Y  
Sbjct: 436 NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV-----NAINIQNQYPLLIAL--EYHG 488

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNAN 668
           I+ +LL +GA   L + R +    N N
Sbjct: 489 IVNILLHYGAE--LRDSRVLHKSLNDN 513

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTL 655
            G +PLH AA  G   +++LLLD GA+   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 25/160 (15%)

Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
           C+NI++   +  T L  A   G   +V L I + ADIN +   K   PL  A +     I
Sbjct: 27  CINISV--DETTTPLIDAIRSGDAKIVELFIKHGADINHIN-TKIPHPLLTAIKIGAHDI 83

Query: 857 VRLLL--------------------AAKQC--NVNAQDYRGNTALHYAAINNHTNLATLL 894
           ++LL+                        C  +VN +D    T LHYA          +L
Sbjct: 84  IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143

Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934
            + GA   I++  G   +H+A +     ++++L  +  + 
Sbjct: 144 FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA 183

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLN 677
           N  +  G +PLH A   G+  ++++LL+ GA+PTL +K   TPL+ A       V +LL+
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Query: 678 AYVHKPKPLYNYLVPKEKVSRPPS 701
            +      L     P     +PPS
Sbjct: 169 RHSQCHFELGANAKPDSFTGKPPS 192

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           A L+G + +   +L++G + N +   G SP+  A        + LL+  GA  ++   + 
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAV-NNQGDSPLHAAARWGYTSIIQLLL 647
            + LH A   G    V+ L+       L    + V    G +PLH A       I++LL+
Sbjct: 69  ESELHDAVEEGDVKAVEELL------DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI 122

Query: 648 DHGANPTLENKRKVTPLQNA 667
             GA+P + N  K +PL  A
Sbjct: 123 ARGADPDIPNTDKFSPLHLA 142

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
           CL+I  C   G T L IA + G   + ++L++  A+I+   +   +  L  A +NN + I
Sbjct: 160 CLDIEDCC--GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217

Query: 857 VRLLLA-AKQCNV 868
           VRL +     CN+
Sbjct: 218 VRLFIKRGADCNI 230

Length = 413

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 531 LYGRIK-----VVDLVLELGADTNSQ----DLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           LY  IK     ++D +L+LGAD  +     +    +PL YA    + +   LL+  GA +
Sbjct: 37  LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV 96

Query: 582 NLTDNEGN-TALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
           N    E   T L+++  +G   C++ L+ +        +IN   N   +P+  A      
Sbjct: 97  NRYAEEAKITPLYISVLHGCLKCLEILLSYGA------DINIQTNDMVTPIELALMICNN 150

Query: 641 SIIQLLLDHGANPTLENKRKVT 662
            +  ++ D+  +   ++ +K+ 
Sbjct: 151 FLAFMICDNEISNFYKHPKKIL 172

Length = 300

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINL 583
           G +PLH AA  G+  V+ LLL  GA IN 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
           +GNT LHLA  NGH   VK L+          ++NA + 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGA------DVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 44/162 (27%)

Query: 784 DVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLT 843
             +E+E+  +T+  LN++   + G T LH   SL + D V  ++ +          K   
Sbjct: 59  AAIENENLELTELLLNLSCRGAVGDTLLHAI-SLEYVDAVEAILLHLLAA----FRKSGP 113

Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQD----YRGNTALHYAAINNHTNLATLLLKSGA 899
                                    N Q       G TALH AA   +  +  LLL+ GA
Sbjct: 114 LEL---------------------ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA 152

Query: 900 RPQIKNH--------------YGQTCLHMAQQMTSLSLVRVL 927
               +                +G++ L+ A  + S S+V +L
Sbjct: 153 SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL 194

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 506 LKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATR 565
           LK   S       D  G + L+ A     +++V  +L  GA  N   L    PLH AAT 
Sbjct: 14  LKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATL 71

Query: 566 GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
               ++ +LL SG   +  D++GNTAL+ A ++G+   VK  +  N
Sbjct: 72  EDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 117

Length = 284

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTN 549
           G T LH+AA  G +++V L+LE GAD N
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANP 653
           G++PLH AAR G   +++LLL+HGA+ 
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	936
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG4177|consensus	1143		100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
KOG4177|consensus	1143		100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0508|consensus	615		99.98
KOG0509|consensus	600		99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
KOG0509|consensus	600		99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG4369|consensus	2131		99.94
KOG0502|consensus	296		99.93
smart00167	117	VPS9 Domain present in VPS9. Domain present in yea	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
KOG0507|consensus	854		99.92
KOG0507|consensus	854		99.91
KOG4369|consensus	2131		99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0502|consensus	296		99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG0505|consensus	527		99.87
KOG0514|consensus	452		99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0505|consensus	527		99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PF02204	104	VPS9: Vacuolar sorting protein 9 (VPS9) domain; In	99.82
KOG0512|consensus	228		99.81
KOG0514|consensus	452		99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02741	169	hypothetical protein; Provisional	99.78
KOG0195|consensus	448		99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0512|consensus	228		99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
KOG3676|consensus	782		99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.64
KOG0195|consensus	448		99.62
KOG3676|consensus	782		99.58
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.57
KOG4214|consensus	117		99.54
KOG4214|consensus	117		99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.47
KOG1710|consensus	396		99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
KOG1710|consensus	396		99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
KOG0515|consensus	752		99.31
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.31
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.29
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.26
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.25
KOG0515|consensus	752		99.24
KOG2320|consensus	651		98.82
KOG0506|consensus	622		98.7
KOG0782|consensus	1004		98.69
KOG0783|consensus	1267		98.68
PF13606	30	Ank_3: Ankyrin repeat	98.66
KOG0506|consensus	622		98.64
KOG0818|consensus	669		98.61
KOG0818|consensus	669		98.58
KOG0783|consensus	1267		98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.54
KOG0782|consensus	1004		98.52
KOG0705|consensus	749		98.47
KOG0705|consensus	749		98.39
PF13606	30	Ank_3: Ankyrin repeat	98.38
KOG2319|consensus	477		98.32
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.31
KOG2384|consensus	223		98.3
KOG0522|consensus	560		98.28
KOG3609|consensus	822		98.22
KOG0521|consensus	785		98.2
KOG0522|consensus	560		98.06
KOG3609|consensus	822		97.94
KOG2319|consensus	477		97.93
KOG0511|consensus	516		97.92
KOG2384|consensus	223		97.92
KOG0520|consensus	975		97.88
KOG0511|consensus	516		97.76
KOG0521|consensus	785		97.72
KOG0520|consensus	975		97.67
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.26
KOG2505|consensus	591		96.19
KOG2505|consensus	591		95.93
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.34
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.33
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.02
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.77
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.01
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.63
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.92

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-44  Score=432.03  Aligned_cols=419  Identities=24%  Similarity=0.274  Sum_probs=337.3

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHH-----------------------------
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAI-----------------------------  504 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  504 (936)
                      ..+.|+||.|+..|+.|+|+.|++..+......+..+.+|+..+.......                             
T Consensus        39 ~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  118 (682)
T PHA02876         39 SIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLD  118 (682)
T ss_pred             cccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHH
Confidence            357889999999999999999999987743333444555555333110000                             


Q ss_pred             ---Hhhhc--cCCCCcc----cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH
Q psy8454         505 ---NLKHS--QSKPTTQ----SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL  575 (936)
Q Consensus       505 ---~~~~~--~~~~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  575 (936)
                         ...+.  .......    .......++++.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.++|++|+
T Consensus       119 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL  198 (682)
T PHA02876        119 EACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL  198 (682)
T ss_pred             HHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence               00000  0000000    11234567899999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454         576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL  655 (936)
Q Consensus       576 ~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  655 (936)
                      +.|++++..+..|.||||+|+..|+.+++++|++.+.      ++    ..+.++|+.|+..++.+++++|++.|++++.
T Consensus       199 ~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~------~~----~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~  268 (682)
T PHA02876        199 SYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRS------NI----NKNDLSLLKAIRNEDLETSLLLYDAGFSVNS  268 (682)
T ss_pred             HCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCC------CC----CCCcHHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999999999999998652      22    2356799999999999999999999999999


Q ss_pred             cccCCCChhhhhhchhHH-HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcch
Q psy8454         656 ENKRKVTPLQNANNLHVA-KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNI  734 (936)
Q Consensus       656 ~d~~g~t~l~~a~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (936)
                      .+..|.||||+|+..+.. +++..+...+...                                              ..
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi----------------------------------------------n~  302 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADV----------------------------------------------NA  302 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC----------------------------------------------CC
Confidence            999999999999976654 3444444222111                                              11


Q ss_pred             hhhhhHHHHHHHHHcC-cHHHHHHHhcCCcCCCCCC-CCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHH
Q psy8454         735 TEIKKVEQLFALIENN-EIKLIKSYFGLSNEEKVPD-NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALH  812 (936)
Q Consensus       735 ~~~~~~~~l~~ai~~g-~~~~vk~Ll~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~  812 (936)
                      .+..+.+||+.|+..| ..++++.|+..+.+.+..+ .+.+|++.+.....  .......+++.|+++|.+|..|.||||
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~--~~~iv~lLl~~gadin~~d~~G~TpLh  380 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR--NKDIVITLLELGANVNARDYCDKTPIH  380 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCC--cHHHHHHHHHcCCCCccCCCCCCCHHH
Confidence            2234567999999998 6999999999998876544 45567776554322  122345678899999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC-HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC-CHHH
Q psy8454         813 IATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN-LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN-HTNL  890 (936)
Q Consensus       813 ~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~-~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g-~~~i  890 (936)
                      +|+..|+.+++++|+++|++++..+ ..|.||||+|+..++ ..++++|++.| +++|.+|..|+||||+|++.| +.++
T Consensus       381 ~Aa~~~~~~iv~~Ll~~gad~~~~~-~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~~~~~i  458 (682)
T PHA02876        381 YAAVRNNVVIINTLLDYGADIEALS-QKIGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKNCKLDV  458 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCccccC-CCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhCCcHHH
Confidence            9999999999999999999999998 789999999987665 56799999998 999999999999999999977 7899


Q ss_pred             HHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       891 v~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      +++|+++||+++.+|..|.||+++|+.++  .+++.|+..++..
T Consensus       459 v~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~  500 (682)
T PHA02876        459 IEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAEL  500 (682)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCC
Confidence            99999999999999999999999999876  5799998887753

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-43  Score=399.71  Aligned_cols=290  Identities=21%  Similarity=0.278  Sum_probs=223.3

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC--cHHHHHHHHhCCCCCCc-CCCCCCc
Q psy8454         514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG--HQNVLLLLLHSGASINL-TDNEGNT  590 (936)
Q Consensus       514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~-~d~~g~t  590 (936)
                      .++.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..+  ..+++++|+++|++++. .|..|.|
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            34457778888888888888888888888888888888888888888887765  37788888888888884 5788888


Q ss_pred             HHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCcccCCCChhhhhh
Q psy8454         591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNAN  668 (936)
Q Consensus       591 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  668 (936)
                      ||| |+..|+.+++++|++.|      ++++..+..|.||||.|+..+  +.+++++|++.|++++.+|..|.||||+|+
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~g------ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa  216 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIG------FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC  216 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhcc------ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            886 56668888888888755      567788888888888887654  467888888888888888888888888886


Q ss_pred             chh--HHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHH
Q psy8454         669 NLH--VAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL  746 (936)
Q Consensus       669 ~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  746 (936)
                      ..+  ..+++.                                                                     
T Consensus       217 ~~~~~~~~iv~---------------------------------------------------------------------  227 (446)
T PHA02946        217 SKTVKNVDIIN---------------------------------------------------------------------  227 (446)
T ss_pred             HcCCCcHHHHH---------------------------------------------------------------------
Confidence            432  333332                                                                     


Q ss_pred             HHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC-HHHHHH
Q psy8454         747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH-YDLVRL  825 (936)
Q Consensus       747 i~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~-~~~v~~  825 (936)
                                .|+                                    .|+++|.+|..|.||||+|+..++ .+++++
T Consensus       228 ----------lLl------------------------------------~gadin~~d~~G~TpLh~A~~~~~~~~~~~~  261 (446)
T PHA02946        228 ----------LLL------------------------------------PSTDVNKQNKFGDSPLTLLIKTLSPAHLINK  261 (446)
T ss_pred             ----------HHH------------------------------------cCCCCCCCCCCCCCHHHHHHHhCChHHHHHH
Confidence                      222                                    123345555555555555555554 245555


Q ss_pred             HHhCCCCccc--------------------ccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454         826 LINYRADINI--------------------VTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN  885 (936)
Q Consensus       826 LL~~g~~v~~--------------------~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~  885 (936)
                      |+++|+.++.                    .....|.||||+|+.+|+.++|++|+++|        ..|.||||+|+.+
T Consensus       262 Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~--------~~~~t~L~~A~~~  333 (446)
T PHA02946        262 LLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND--------IICEDAMYYAVLS  333 (446)
T ss_pred             HHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC--------CccccHHHHHHHh
Confidence            5555443211                    11135779999999999999999999987        2579999999999


Q ss_pred             CCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       886 g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      |+.++|++|+.+|+++|.. ..|.||||+|++.++.++++.|+.+.|..
T Consensus       334 ~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~~  381 (446)
T PHA02946        334 EYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPTS  381 (446)
T ss_pred             CHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCccH
Confidence            9999999999999999996 58999999999999999999999998864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.1e-41  Score=389.38  Aligned_cols=352  Identities=20%  Similarity=0.200  Sum_probs=245.0

Q ss_pred             HHCCCHHHHHHHHHhc-ccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccC-CCCCCcHHHHHHHc--CCHHHHH
Q psy8454         464 ARLGDGDKVRAILQEE-NKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSM-DDRGFTVLHVAALY--GRIKVVD  539 (936)
Q Consensus       464 ~~~G~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~--g~~~~v~  539 (936)
                      .+.++.++|++|++.| .+.+.                                 + +..|.||||+|+.+  ++.++++
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~---------------------------------~~d~~G~TpLH~A~~n~~~~~eIVk  196 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNY---------------------------------VCKKTGYGILHAYLGNMYVDIDILE  196 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCccc---------------------------------ccCCCCCcHHHHHHHhccCCHHHHH
Confidence            3579999999999998 55432                                 4 67899999998754  6799999


Q ss_pred             HHHhcCCCCCCCCCCCCcHHHHHHHhCc--HHHHHHHHhCCCCCCcCCCCCCcHHHHHH---HcCcHHHHHHHHhccccc
Q psy8454         540 LVLELGADTNSQDLCGCSPLHYAATRGH--QNVLLLLLHSGASINLTDNEGNTALHLAT---NNGHETCVKALIYFNEQE  614 (936)
Q Consensus       540 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~--~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~---~~g~~eiv~~Ll~~~~~~  614 (936)
                      +|+++|+++|.+|..|.||||+|+..|+  .+++++|+++|++++.+|..|.||||.|+   .+++.++++.|++.+.. 
T Consensus       197 lLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~-  275 (764)
T PHA02716        197 WLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDG-  275 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccc-
Confidence            9999999999999999999999999995  58999999999999999999999999875   56899999999975311 


Q ss_pred             ccccCcccccCCCChHHH---HHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccC
Q psy8454         615 VLNLNINAVNNQGDSPLH---AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV  691 (936)
Q Consensus       615 ~~~~~~~~~~~~g~t~L~---~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~  691 (936)
                            +.. ....++++   .|++.|+.+++++|++.|++++.+|..|+||||+|+..                     
T Consensus       276 ------n~~-~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~---------------------  327 (764)
T PHA02716        276 ------NKV-KNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR---------------------  327 (764)
T ss_pred             ------ccc-ccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH---------------------
Confidence                  111 11223343   47889999999999999999999999999999987421                     


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCC-C
Q psy8454         692 PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD-N  770 (936)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~-~  770 (936)
                                                                              ..++.+++++|++.+.+.+..+ .
T Consensus       328 --------------------------------------------------------~~~~~eIVklLLe~GADIN~kD~~  351 (764)
T PHA02716        328 --------------------------------------------------------HNISTDIIKLLHEYGNDLNEPDNI  351 (764)
T ss_pred             --------------------------------------------------------hCCCchHHHHHHHcCCCCccCCCC
Confidence                                                                    1223344444444332221111 1


Q ss_pred             CCcccchhccc-----------chhhhhccCccccccCCCcccCCCCCCcHHHH----HHHcCCHHHHHHHHhCCCCccc
Q psy8454         771 ACHPLCQCAKC-----------KEDVVESESRPVTDECLNINICNSDGYTALHI----ATSLGHYDLVRLLINYRADINI  835 (936)
Q Consensus       771 ~~~~l~~~~~~-----------~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~----Aa~~g~~~~v~~LL~~g~~v~~  835 (936)
                      +.+|++.....           .......+.+.|++.|++++.++..|.||||.    |...++.+++++|++.|+....
T Consensus       352 G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~  431 (764)
T PHA02716        352 GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMV  431 (764)
T ss_pred             CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhh
Confidence            11222211100           00011233345566666666666666666662    2223556666666666543322


Q ss_pred             ccc-------cCCCcH--HHHHHhCCCHH------------------HHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy8454         836 VTR-------VKQLTP--LHIACQNNNLS------------------IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHT  888 (936)
Q Consensus       836 ~~~-------~~g~Tp--Lh~A~~~g~~~------------------iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~  888 (936)
                      ...       ..+.+|  +|.++..++.+                  ++.+++..+ .++|.+|..|+||||+|+..|+.
T Consensus       432 ~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~-~nvN~~D~~G~TPLh~Aa~~g~~  510 (764)
T PHA02716        432 KHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIER-YNNAVCETSGMTPLHVSIISHTN  510 (764)
T ss_pred             hhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhh-ccccccCCCCCCHHHHHHHcCCc
Confidence            110       112222  33444333222                  222222233 56788899999999999999887


Q ss_pred             H-----HHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH-----HHHHHHhhhCCCc
Q psy8454         889 N-----LATLLLKSGARPQIKNHYGQTCLHMAQQMTSL-----SLVRVLTHEAPFV  934 (936)
Q Consensus       889 ~-----iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~-----~iv~~Ll~~~~~~  934 (936)
                      +     ++++|+++||++|++|..|.||||+|+++|+.     ++|++|++++|.+
T Consensus       511 ~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~  566 (764)
T PHA02716        511 ANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNV  566 (764)
T ss_pred             cchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCc
Confidence            4     55999999999999999999999999999977     9999999999875

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.1e-41  Score=393.24  Aligned_cols=403  Identities=17%  Similarity=0.171  Sum_probs=305.1

Q ss_pred             hHHHhhhhhcc------cCCChHHHHHHHHC---CCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCC
Q psy8454         442 LKVYNKYNNYK------KISSLTKLFEFARL---GDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSK  512 (936)
Q Consensus       442 ~~~~~~l~~~~------~~~~~~~L~~A~~~---G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (936)
                      ++.+++++..+      +..+.++||.|+..   |+.++|+.|++.|++..                             
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~-----------------------------   62 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPL-----------------------------   62 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcc-----------------------------
Confidence            45566666443      45678999997555   88999999999987653                             


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHH----HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCC
Q psy8454         513 PTTQSMDDRGFTVLHVAALYGRIK----VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG  588 (936)
Q Consensus       513 ~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g  588 (936)
                          .++..|.||||+|+..|+.+    +++.|++.+...+..+.  .+++++|+..|+.+++++|+++|++++.+|..|
T Consensus        63 ----~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g  136 (661)
T PHA02917         63 ----HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENH  136 (661)
T ss_pred             ----ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCC
Confidence                26788999999999999854    56788887544454432  367888999999999999999999999999999


Q ss_pred             CcHHHHH--HHcCcHHHHHHHHhcccccccccCcccccC--------------CCChHHHHHHH-----------hCCHH
Q psy8454         589 NTALHLA--TNNGHETCVKALIYFNEQEVLNLNINAVNN--------------QGDSPLHAAAR-----------WGYTS  641 (936)
Q Consensus       589 ~t~L~~A--~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~--------------~g~t~L~~A~~-----------~g~~~  641 (936)
                      .||||.|  +.+|+.++|++|+++|+      +++..+.              .+.||||+|+.           .++.+
T Consensus       137 ~T~L~~~~a~~~~~~eivklLi~~Ga------~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~e  210 (661)
T PHA02917        137 RSVIENYVMTDDPVPEIIDLFIENGC------SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPE  210 (661)
T ss_pred             ccHHHHHHHccCCCHHHHHHHHHcCC------CccccccccccccccccccccccccHHHHHHhhcccccccccccCcHH
Confidence            9999954  45789999999999774      4544332              23699999986           46899


Q ss_pred             HHHHHHHCCCCCCCcccCCCChhhhhhchhHH--HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCccccccccccccc
Q psy8454         642 IIQLLLDHGANPTLENKRKVTPLQNANNLHVA--KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEAN  719 (936)
Q Consensus       642 iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~--~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  719 (936)
                      ++++|++.|++++..|..|.||||+|+..+..  ++++.+.. +......                              
T Consensus       211 iv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~------------------------------  259 (661)
T PHA02917        211 VVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAY------------------------------  259 (661)
T ss_pred             HHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccc------------------------------
Confidence            99999999999999999999999999977653  56666552 2111000                              


Q ss_pred             ccccccccCCCCcchhhhhhHHHHHHHHH---------cCcHHHHHHHhcCCcCCCCC-------CCC-Cc-ccchh---
Q psy8454         720 ISNVNVREGVRPRNITEIKKVEQLFALIE---------NNEIKLIKSYFGLSNEEKVP-------DNA-CH-PLCQC---  778 (936)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~l~~ai~---------~g~~~~vk~Ll~~~~~~~~~-------~~~-~~-~l~~~---  778 (936)
                                  ....+....++++.|+.         ..+.++++.|++.|.+....       ... .. ++...   
T Consensus       260 ------------~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (661)
T PHA02917        260 ------------SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMN  327 (661)
T ss_pred             ------------ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhc
Confidence                        00111122233344441         12778888888888653110       000 00 00100   


Q ss_pred             --------cc-c-chhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCcccccccCCCcHHHH
Q psy8454         779 --------AK-C-KEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN-YRADINIVTRVKQLTPLHI  847 (936)
Q Consensus       779 --------~~-~-~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~-~g~~v~~~~~~~g~TpLh~  847 (936)
                              .. . .........+.|++.|+++|.++.+|.|+.    .+.+.++++.||. .|++++..+ ..|.||||.
T Consensus       328 ~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~-~~G~TpL~~  402 (661)
T PHA02917        328 SDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHL-DDGEIPIGH  402 (661)
T ss_pred             hHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccC-CCCCChhHH
Confidence                    00 0 111122356789999999999999999854    3677888888886 699888877 579999999


Q ss_pred             HHhCC-----------------------CHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCc
Q psy8454         848 ACQNN-----------------------NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK  904 (936)
Q Consensus       848 A~~~g-----------------------~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~  904 (936)
                      |++.+                       ..+++++|+++| +|+|.+|..|+||||+|+..++.+++++|+++|++++.+
T Consensus       403 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G-AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~  481 (661)
T PHA02917        403 LCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL-KDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIR  481 (661)
T ss_pred             HHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            98543                       356889999999 999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHH-cCCHHHHHHHhhhCCCc
Q psy8454         905 NHYGQTCLHMAQQ-MTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       905 d~~g~T~L~~A~~-~g~~~iv~~Ll~~~~~~  934 (936)
                      |..|+|||++|+. .++.+++++|+.++|.+
T Consensus       482 d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i  512 (661)
T PHA02917        482 SNNGYTCIAIAINESRNIELLKMLLCHKPTL  512 (661)
T ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCh
Confidence            9999999999996 78999999999999865

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=7e-41  Score=379.64  Aligned_cols=427  Identities=14%  Similarity=0.089  Sum_probs=290.4

Q ss_pred             cccCCChHHHHHHHHCC---CHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHH
Q psy8454         451 YKKISSLTKLFEFARLG---DGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLH  527 (936)
Q Consensus       451 ~~~~~~~~~L~~A~~~G---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  527 (936)
                      ..+..|.||||.|+.+|   +.++|+.|++.|++...                                 +|..|.||||
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~---------------------------------kD~~G~TPLh   82 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC---------------------------------RNNEGLTPLG   82 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc---------------------------------cCCCCCChHH
Confidence            45567899999999997   59999999999987643                                 7889999999


Q ss_pred             HHHHcC--CHHHHHHHHhcCC--CCCCCCCCCCcHHHHHHH--hCcHHHHHHHHh-CCCCCCcCCC-----CCCcHHHHH
Q psy8454         528 VAALYG--RIKVVDLVLELGA--DTNSQDLCGCSPLHYAAT--RGHQNVLLLLLH-SGASINLTDN-----EGNTALHLA  595 (936)
Q Consensus       528 ~A~~~g--~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~-~g~~~~~~d~-----~g~t~L~~A  595 (936)
                      +|+..|  +.+++++|++.|+  +++..+.-+.+||+.++.  +++.+++++|++ .+++++....     .|.+|+++|
T Consensus        83 ~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~  162 (672)
T PHA02730         83 VYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVT  162 (672)
T ss_pred             HHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHh
Confidence            999977  7999999999965  557778779999999988  889999999996 7788876633     789999999


Q ss_pred             HHcCcHHHHHHHHhccccccccc--CcccccCCCC-hHHHHH------HHhCCHHHHHHHHHCCCCCCCcccCCCChhhh
Q psy8454         596 TNNGHETCVKALIYFNEQEVLNL--NINAVNNQGD-SPLHAA------ARWGYTSIIQLLLDHGANPTLENKRKVTPLQN  666 (936)
Q Consensus       596 ~~~g~~eiv~~Ll~~~~~~~~~~--~~~~~~~~g~-t~L~~A------~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~  666 (936)
                      ...++.++|++|+++|+.. .|.  ..+..+..+. |.||++      ...++.+++++|+++|++++.+|..|.||||+
T Consensus       163 ~~~~~~eIvklLi~~g~~v-~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        163 TPNPRPEVLLWLLKSECYS-TGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             cCCCchHHHHHHHHcCCcc-cccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            9999999999999988542 111  0122334444 555533      34568999999999999999999999999996


Q ss_pred             --hhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccc-cc--cccccccccCCC---------Cc
Q psy8454         667 --ANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVN-EA--NISNVNVREGVR---------PR  732 (936)
Q Consensus       667 --a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~---------~~  732 (936)
                        +...+..++++.++........+........+.....-..   ..++... ..  .+....++....         +.
T Consensus       242 ~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  318 (672)
T PHA02730        242 YWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLN---KRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSY  318 (672)
T ss_pred             HHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhh---hhhhcccCCcchHHHHHHhhccCcchhhhhccccc
Confidence              4344446776666642111110000000000000000000   0000000 00  000000000000         00


Q ss_pred             chhhh--hhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccch-hhhhccCccccccCCCcccCCCCCCc
Q psy8454         733 NITEI--KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKE-DVVESESRPVTDECLNINICNSDGYT  809 (936)
Q Consensus       733 ~~~~~--~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~d~n~~d~~g~t  809 (936)
                      .....  ...+.+..-.+..+...++-++.                 .--+.. .....+.++|+++|+++|.. ..|.|
T Consensus       319 ~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~-----------------~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~T  380 (672)
T PHA02730        319 DSREYNHYIIDNILKRFRQQDESIVQAMLI-----------------NYLHYGDMVSIPILRCMLDNGATMDKT-TDNNY  380 (672)
T ss_pred             cccccchhHHHHHHHhhhccchhHHHHHHH-----------------HHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCc
Confidence            00000  00000000001111111111110                 000011 12223344666788889985 79999


Q ss_pred             HHHHHHHcCC----HHHHHHHHhCCC--CcccccccCCCcHHHH---HHhCC---------CHHHHHHHHhcCCCCCCCC
Q psy8454         810 ALHIATSLGH----YDLVRLLINYRA--DINIVTRVKQLTPLHI---ACQNN---------NLSIVRLLLAAKQCNVNAQ  871 (936)
Q Consensus       810 ~L~~Aa~~g~----~~~v~~LL~~g~--~v~~~~~~~g~TpLh~---A~~~g---------~~~iv~~LL~~g~~dvn~~  871 (936)
                      |||+|+..++    .+++++|+++|+  +++..+ ..|.||||.   |...+         ..+++++|+.+| +|+|++
T Consensus       381 pLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd-~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-ADINak  458 (672)
T PHA02730        381 PLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVS-NNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-DDIDMI  458 (672)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHcCCCccccccc-cCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc-cchhcc
Confidence            9999998875    899999999998  688887 799999994   33332         236799999999 999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCccc-CCCcHHHHHHHc--CCHHHHHHHhhhCCCc
Q psy8454         872 DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH-YGQTCLHMAQQM--TSLSLVRVLTHEAPFV  934 (936)
Q Consensus       872 d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~-~g~T~L~~A~~~--g~~~iv~~Ll~~~~~~  934 (936)
                      |..|+||||+|+..++.+++++|+++||+++.+|. .|.||||+|+..  ++.+++++|+++||.+
T Consensus       459 D~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        459 DNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999997 699999999984  7999999999999864

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-40  Score=379.04  Aligned_cols=309  Identities=24%  Similarity=0.324  Sum_probs=272.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy8454         459 KLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVV  538 (936)
Q Consensus       459 ~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  538 (936)
                      .|..|+.+|+++.|+.|++.+...                                ++..+..|.||||.|+..|+.+++
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~--------------------------------~n~~~~~~~tpL~~A~~~g~~~iv   51 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNC--------------------------------INISVDETTTPLIDAIRSGDAKIV   51 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCC--------------------------------CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            688999999999999999876542                                222567799999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccccccc
Q psy8454         539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL  618 (936)
Q Consensus       539 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~  618 (936)
                      ++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++...          +....+.+++++|++.|      +
T Consensus        52 ~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g------~  115 (434)
T PHA02874         52 ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCG------I  115 (434)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCc------C
Confidence            9999999999999999999999999999999999999999876532          33446789999999865      6


Q ss_pred             CcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCC
Q psy8454         619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSR  698 (936)
Q Consensus       619 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  698 (936)
                      +++.++..|.||||+|++.|+.+++++|++.|++++..+..|.||||+|+.                             
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~-----------------------------  166 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIK-----------------------------  166 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH-----------------------------
Confidence            788999999999999999999999999999999999999999999887743                             


Q ss_pred             CCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchh
Q psy8454         699 PPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQC  778 (936)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~  778 (936)
                                                                        .|+.+++++|++                  
T Consensus       167 --------------------------------------------------~~~~~iv~~Ll~------------------  178 (434)
T PHA02874        167 --------------------------------------------------HNFFDIIKLLLE------------------  178 (434)
T ss_pred             --------------------------------------------------CCcHHHHHHHHH------------------
Confidence                                                              455666666665                  


Q ss_pred             cccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHH
Q psy8454         779 AKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR  858 (936)
Q Consensus       779 ~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~  858 (936)
                                       .|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||.|+..++ ++++
T Consensus       179 -----------------~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~-~~g~TpL~~A~~~~~-~~i~  239 (434)
T PHA02874        179 -----------------KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC-KNGFTPLHNAIIHNR-SAIE  239 (434)
T ss_pred             -----------------CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCC-CCCCCHHHHHHHCCh-HHHH
Confidence                             345567889999999999999999999999999999999888 899999999999876 5677


Q ss_pred             HHHhcCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcC-CHHHHHHHhhhCCC
Q psy8454         859 LLLAAKQCNVNAQDYRGNTALHYAAINN-HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT-SLSLVRVLTHEAPF  933 (936)
Q Consensus       859 ~LL~~g~~dvn~~d~~g~TpL~~A~~~g-~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g-~~~iv~~Ll~~~~~  933 (936)
                      +|+ .| +++|.+|..|+||||+|++.+ +.+++++|+++|++++.+|..|+|||++|++.+ +.++++.|+.++..
T Consensus       240 ~Ll-~~-~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~  314 (434)
T PHA02874        240 LLI-NN-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL  314 (434)
T ss_pred             HHH-cC-CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc
Confidence            777 45 899999999999999999876 889999999999999999999999999999987 77899999887754

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.7e-41  Score=404.00  Aligned_cols=424  Identities=20%  Similarity=0.203  Sum_probs=302.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      ..|+.++..|+.+.+-..++...-...                           ......++..+.||||+|+..||.++
T Consensus         4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~t~LH~A~~~g~~e~   56 (682)
T PHA02876          4 DDLYRIMCRGNCIDILSAIDNYDLHKH---------------------------GANQCENESIPFTAIHQALQLRQIDI   56 (682)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhh---------------------------hhhhcccccccchHHHHHHHHHhhhH
Confidence            368888999988665444444321100                           00112245668999999999999999


Q ss_pred             HHHHHhcCCC-CCCCCCCCCcHHHHHHHhCcHH-------------------------------HHHHHHh--CCCCCCc
Q psy8454         538 VDLVLELGAD-TNSQDLCGCSPLHYAATRGHQN-------------------------------VLLLLLH--SGASINL  583 (936)
Q Consensus       538 v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~-------------------------------iv~~Ll~--~g~~~~~  583 (936)
                      |+.|++.+.+ ++..|..|.||||+|+..++..                               ++..|.+  .|.++..
T Consensus        57 V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  136 (682)
T PHA02876         57 VEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHY  136 (682)
T ss_pred             HHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence            9999998776 5677888999999888443311                               0111111  1111111


Q ss_pred             C----CCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccC
Q psy8454         584 T----DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKR  659 (936)
Q Consensus       584 ~----d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~  659 (936)
                      .    .....++++.|+..|+.+++++|++.|      +++|.+|..|.||||+|++.|+.++|++|+++|++++..+..
T Consensus       137 ~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G------advn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~  210 (682)
T PHA02876        137 DKINESIEYMKLIKERIQQDELLIAEMLLEGG------ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD  210 (682)
T ss_pred             HhhccchhhhHHHHHHHHCCcHHHHHHHHhCC------CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCC
Confidence            1    112345667777777777777777654      466777777777777777777777777777777777777777


Q ss_pred             CCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhh
Q psy8454         660 KVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKK  739 (936)
Q Consensus       660 g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (936)
                      |.||+++|+..+..++++.+...........                .....................+... ...+..+
T Consensus       211 g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~----------------~~L~~ai~~~~~~~~~~Ll~~g~~v-n~~d~~g  273 (682)
T PHA02876        211 DLSVLECAVDSKNIDTIKAIIDNRSNINKND----------------LSLLKAIRNEDLETSLLLYDAGFSV-NSIDDCK  273 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCCCc----------------HHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            7777777777777776666653322111000                0000000011111111112222111 1223356


Q ss_pred             HHHHHHHHHcCcH-HHHHHHhcCCcCCCCC-CCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc
Q psy8454         740 VEQLFALIENNEI-KLIKSYFGLSNEEKVP-DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL  817 (936)
Q Consensus       740 ~~~l~~ai~~g~~-~~vk~Ll~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~  817 (936)
                      .+|||.|+..++. ++++.|++.+.+.+.. ..+.+|++.+......  ....+.++..|++++..+..|.||||+|+..
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~--~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYD--TENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCC--HHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            7899999999986 6999999999887644 4566788776654321  2234567889999999999999999999986


Q ss_pred             -CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHH
Q psy8454         818 -GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH-TNLATLLL  895 (936)
Q Consensus       818 -g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~-~~iv~~LL  895 (936)
                       ++.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++.| ++++..+..|.||||+|+..++ ..++++|+
T Consensus       352 ~~~~~iv~lLl~~gadin~~d-~~G~TpLh~Aa~~~~~~iv~~Ll~~g-ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll  429 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARD-YCDKTPIHYAAVRNNVVIINTLLDYG-ADIEALSQKIGTALHFALCGTNPYMSVKTLI  429 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCchHHHHHHcCCHHHHHHHHH
Confidence             57999999999999999999 89999999999999999999999999 9999999999999999998766 56899999


Q ss_pred             HcCCCCcCcccCCCcHHHHHHHcC-CHHHHHHHhhhCCCcC
Q psy8454         896 KSGARPQIKNHYGQTCLHMAQQMT-SLSLVRVLTHEAPFVL  935 (936)
Q Consensus       896 ~~Ga~~~~~d~~g~T~L~~A~~~g-~~~iv~~Ll~~~~~~~  935 (936)
                      ++|+++|.+|..|+||||+|+..| +.+++++|++.|+.+.
T Consensus       430 ~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        430 DRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             hCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCC
Confidence            999999999999999999999976 7899999999998763

>KOG0510|consensus

Probab=100.00  E-value=5.1e-41  Score=368.51  Aligned_cols=343  Identities=26%  Similarity=0.330  Sum_probs=268.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN  597 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  597 (936)
                      .+..|.|++|.|+..+..      ++.-+.....|..+.||||+|+.....+.+++|++.|+++...+..+.+|+|+|+.
T Consensus        57 ~~~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~  130 (929)
T KOG0510|consen   57 KRAFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAAD  130 (929)
T ss_pred             hhhhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccc
Confidence            455677888877777654      23334445566777778888887777788888888888877777777888888888


Q ss_pred             cCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHH
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN  677 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~  677 (936)
                      .|+.++++.|+.++      +++|..+.+|.||||.||..++.|..+.|++.|+++...|.+|.+|+|.|+..+..++++
T Consensus       131 ~~~~s~L~~Ll~~~------~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mE  204 (929)
T KOG0510|consen  131 SGNYSCLKLLLDYG------ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECME  204 (929)
T ss_pred             cchHHHHHHHHHhc------CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhh
Confidence            88888888888755      567777777888888888888877777778888888877888888888887777777776


Q ss_pred             HhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHH
Q psy8454         678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS  757 (936)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~  757 (936)
                      ..+.....                                         ......+.......+|||.|+..|+.++++.
T Consensus       205 i~l~~~g~-----------------------------------------~r~~~in~~~n~~~~pLhlAve~g~~e~lk~  243 (929)
T KOG0510|consen  205 IFLPEHGY-----------------------------------------ERQTHINFDNNEKATPLHLAVEGGDIEMLKM  243 (929)
T ss_pred             hhhccccc-----------------------------------------hhhcccccccCCCCcchhhhhhcCCHHHHHH
Confidence            66530000                                         0001112223345567888888888888888


Q ss_pred             HhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccc
Q psy8454         758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVT  837 (936)
Q Consensus       758 Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~  837 (936)
                      +++.+.........          .......          -+|..|.+|.||||+||+.|+++.+..|+..|++++.++
T Consensus       244 ~L~n~~~~a~~~~~----------~~~q~ke----------lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn  303 (929)
T KOG0510|consen  244 CLQNGKKIADVQLD----------AMQQEKE----------LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN  303 (929)
T ss_pred             HHhCccccchhhhH----------HHHHHHH----------HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence            88876554221100          0011111          167889999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHhCCCHHHHHHHHh-cCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc---CcccCCCcHHH
Q psy8454         838 RVKQLTPLHIACQNNNLSIVRLLLA-AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ---IKNHYGQTCLH  913 (936)
Q Consensus       838 ~~~g~TpLh~A~~~g~~~iv~~LL~-~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~---~~d~~g~T~L~  913 (936)
                       .++.||||.|+.+|+.+.|+.||+ .+....|..|..|+||||+|+++||.+++++|++.||...   ..|.+|.||||
T Consensus       304 -~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH  382 (929)
T KOG0510|consen  304 -KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALH  382 (929)
T ss_pred             -CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhh
Confidence             899999999999999999999999 7778899999999999999999999999999999999887   46999999999


Q ss_pred             HHHHcCCHHHHHHHhhhCCCc
Q psy8454         914 MAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       914 ~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      .|+++|+..+|++|+.+|+.+
T Consensus       383 ~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  383 LAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             HHHHhccHHHHHHHHHcCCce
Confidence            999999999999999999987

>KOG4177|consensus

Probab=100.00  E-value=3.2e-41  Score=395.38  Aligned_cols=487  Identities=26%  Similarity=0.344  Sum_probs=346.7

Q ss_pred             cchhhhhhhHHHhhhhhcc------cCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCccccc-------------
Q psy8454         434 EMSDLTTQLKVYNKYNNYK------KISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPL-------------  494 (936)
Q Consensus       434 ~~~~~~~~~~~~~~l~~~~------~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~-------------  494 (936)
                      ..+...++.++++.++..+      +..+.|+|+.|+..|+.+.+..|+..+++.... +..+..|+             
T Consensus        92 h~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k-~~~g~t~l~~a~~~~~~~ll~  170 (1143)
T KOG4177|consen   92 HVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPINIK-TKNGLSPLHMAAQVACARLLL  170 (1143)
T ss_pred             HHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhcccccHHHHHHHHHccCCCccc-ccCCCCchhhhcchhhhHHhh
Confidence            3344456666777766655      456788999999999999999999888654433 11222222             


Q ss_pred             ----------ccCCchhhHHHhh-hccCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy8454         495 ----------CSCDDCEEAINLK-HSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA  563 (936)
Q Consensus       495 ----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  563 (936)
                                +....|....... +.....+.+..+.+|.||+|.|+..+.++++++++.+|+++...|..|.||||.|+
T Consensus       171 ~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~  250 (1143)
T KOG4177|consen  171 EYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAA  250 (1143)
T ss_pred             hcccchhhhhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHH
Confidence                      2222233322222 24566778888999999999999999999999999999999999999999999999


Q ss_pred             HhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHH
Q psy8454         564 TRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII  643 (936)
Q Consensus       564 ~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv  643 (936)
                      ..|+.+++.+|+.+|+.++..+..|.||+|+|+..+..+++++|++.+      +++...+....||++.|.+.|..+++
T Consensus       251 ~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~g------a~~~~~~~~~kt~l~~a~~~g~~~i~  324 (1143)
T KOG4177|consen  251 FMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNG------ADVLAKARDDQTPLHIASRLGHEEIV  324 (1143)
T ss_pred             hccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccC------cccccccccccChhhhhcccchHHHH
Confidence            999999999999999999999999999999999999999999999865      67888999999999999999999999


Q ss_pred             HHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccC----CCCCCCCCCC-----------------C
Q psy8454         644 QLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV----PKEKVSRPPS-----------------P  702 (936)
Q Consensus       644 ~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~----~~~~~~~~~~-----------------~  702 (936)
                      +++++.|+.++..+..|.+|+|.++..+..++...+............    +.........                 .
T Consensus       325 ~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~g  404 (1143)
T KOG4177|consen  325 HLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAG  404 (1143)
T ss_pred             HHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCC
Confidence            999999999999999999999999988888855555433222111000    0000000000                 0


Q ss_pred             CCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcC-cHHHHHHHhcCCcCCCCC-CCCCcccchhcc
Q psy8454         703 PPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENN-EIKLIKSYFGLSNEEKVP-DNACHPLCQCAK  780 (936)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g-~~~~vk~Ll~~~~~~~~~-~~~~~~l~~~~~  780 (936)
                      ....................+.+..+..+.... ..+.+++|.|+..| ..+....++..+.+.+.. ..+.+|++....
T Consensus       405 k~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~-~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq  483 (1143)
T KOG4177|consen  405 KNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKA-KLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQ  483 (1143)
T ss_pred             CCCcceeeehhhccCcceEEEEeccCCChhhHh-hcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhc
Confidence            000000111111122222223333222222222 22355566665555 555555555555555332 344445554444


Q ss_pred             cchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHH
Q psy8454         781 CKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL  860 (936)
Q Consensus       781 ~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~L  860 (936)
                      .......   .++.+.++..+.....|-+++|.|...+...+++.++++|++++.++ ..|.||||.||.+|++++|++|
T Consensus       484 ~Gh~~~~---~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~-~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  484 EGHTEVV---QLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRT-GRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             cCCchHH---HHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhc-ccccchHHHHHhcCCchHHHHh
Confidence            3333222   23444445555555566666666666666666666666788888888 8889999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       861 L~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +++| +|+++++..|+||||.||..|+.+|+.+|+++||++|+.|.+|.|||++|++.|+.+++++|+..+..
T Consensus       560 Le~g-Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  560 LEHG-ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             hhCC-ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999 99999999999999999999999999999999999999999999999999999999999999876654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.1e-39  Score=375.25  Aligned_cols=375  Identities=15%  Similarity=0.133  Sum_probs=249.2

Q ss_pred             hhhhHHHhhhhhcc--------cCCChHHHHHHHH--CCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhh
Q psy8454         439 TTQLKVYNKYNNYK--------KISSLTKLFEFAR--LGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKH  508 (936)
Q Consensus       439 ~~~~~~~~~l~~~~--------~~~~~~~L~~A~~--~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (936)
                      .++.+++++|++.+        +..+.++||.|+.  .|+.++|++|++.|++.+.                        
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~------------------------  207 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL------------------------  207 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC------------------------
Confidence            46788999999887        4457899998865  4689999999999876433                        


Q ss_pred             ccCCCCcccCCCCCCcHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCcHHHHHH---HhCcHHHHHHHHhCCCCCCc
Q psy8454         509 SQSKPTTQSMDDRGFTVLHVAALYGR--IKVVDLVLELGADTNSQDLCGCSPLHYAA---TRGHQNVLLLLLHSGASINL  583 (936)
Q Consensus       509 ~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~g~~~iv~~Ll~~g~~~~~  583 (936)
                               +|..|.||||+|+..|+  .+++++|+++|+++|.++..|+||||+|+   ..++.++++.|++.+..-..
T Consensus       208 ---------kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~  278 (764)
T PHA02716        208 ---------QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV  278 (764)
T ss_pred             ---------CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc
Confidence                     67889999999999995  59999999999999999999999999875   34566666666654322111


Q ss_pred             CCCCCCcHHH---HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHH--HhCCHHHHHHHHHCCCCCCCccc
Q psy8454         584 TDNEGNTALH---LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA--RWGYTSIIQLLLDHGANPTLENK  658 (936)
Q Consensus       584 ~d~~g~t~L~---~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~ga~~~~~d~  658 (936)
                      .  ...++++   .|+..|+.+++++|++.|      ++++.+|..|+||||+|+  ..++.+++++|++.|++++.+|.
T Consensus       279 ~--~~~~~L~~~i~AA~~g~leiVklLLe~G------AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~  350 (764)
T PHA02716        279 K--NIPMILHSYITLARNIDISVVYSFLQPG------VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN  350 (764)
T ss_pred             c--cchhhhHHHHHHHHcCCHHHHHHHHhCC------CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCC
Confidence            0  1112222   255666666666666644      455666666666666554  24566666666666666666666


Q ss_pred             CCCChhhhhhch--------------hHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccc
Q psy8454         659 RKVTPLQNANNL--------------HVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVN  724 (936)
Q Consensus       659 ~g~t~l~~a~~~--------------~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  724 (936)
                      .|.||||+|+..              +..++++.++..+..                                       
T Consensus       351 ~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD---------------------------------------  391 (764)
T PHA02716        351 IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD---------------------------------------  391 (764)
T ss_pred             CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC---------------------------------------
Confidence            666666665421              223333333321111                                       


Q ss_pred             cccCCCCcchhhhhhHHHHH----HHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCc
Q psy8454         725 VREGVRPRNITEIKKVEQLF----ALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNI  800 (936)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~l~----~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~  800 (936)
                             ....+..+.+||+    .|...+..+++++|+..+...........                  .      .+
T Consensus       392 -------In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q------------------~------ll  440 (764)
T PHA02716        392 -------ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQ------------------D------LL  440 (764)
T ss_pred             -------CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhh------------------h------hh
Confidence                   0111123344554    22334567777777765432111000000                  0      01


Q ss_pred             ccCCCCCCcHHHHHHHcCCH------------------HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCH-----HHH
Q psy8454         801 NICNSDGYTALHIATSLGHY------------------DLVRLLINYRADINIVTRVKQLTPLHIACQNNNL-----SIV  857 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~------------------~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~-----~iv  857 (936)
                      +..+..+.. +|.++..++.                  +++..++..+.+++..+ ..|+||||+|+..|+.     +++
T Consensus       441 ~~~d~~~~~-lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D-~~G~TPLh~Aa~~g~~~~v~~e~~  518 (764)
T PHA02716        441 IRVDDTPCI-IHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCE-TSGMTPLHVSIISHTNANIVMDSF  518 (764)
T ss_pred             hccCcchhh-HHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccC-CCCCCHHHHHHHcCCccchhHHHH
Confidence            111222222 3444433332                  33344455677778777 8999999999999876     455


Q ss_pred             HHHHhcCCCCCCCCCCCCCcHHHHHHHcCCH-----HHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHT-----NLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       858 ~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~-----~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      ++|++.| +|+|.+|..|+||||+|+++|+.     ++|+.||++|++++..      .+++|..+++.+++.+|..+++
T Consensus       519 k~LL~~G-ADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~  591 (764)
T PHA02716        519 VYLLSIQ-YNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV------IIFLDKCYANGKFPSLLLSEDD  591 (764)
T ss_pred             HHHHhCC-CCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH------HHHHHhhhhhhHHHHHHHHcch
Confidence            9999998 99999999999999999999976     8999999999998876      4899999999999999988876


Q ss_pred             C
Q psy8454         933 F  933 (936)
Q Consensus       933 ~  933 (936)
                      .
T Consensus       592 ~  592 (764)
T PHA02716        592 I  592 (764)
T ss_pred             h
Confidence            3

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-39  Score=376.95  Aligned_cols=288  Identities=27%  Similarity=0.310  Sum_probs=262.0

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC---cHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC-cHH
Q psy8454         527 HVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG---HQNVLLLLLHSGASINLTDNEGNTALHLATNNG-HET  602 (936)
Q Consensus       527 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g-~~e  602 (936)
                      ..|+..++.+++++|+++|++++.++..|.||||+|+..|   +.+++++|++.|++++.++..|.||||+|+..| +.+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            5567888999999999999999999999999999999999   999999999999999999999999999999999 599


Q ss_pred             HHHHHHhcccccccccCcccccCCCChHHHHHH--HhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhh
Q psy8454         603 CVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA--RWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYV  680 (936)
Q Consensus       603 iv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~  680 (936)
                      ++++|+++|      ++++.++..|.||||+|+  ..++.+++++|++.|++++..+..|.||+|+|...+         
T Consensus        99 iv~lLl~~g------a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~---------  163 (471)
T PHA03095         99 VIKLLIKAG------ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSR---------  163 (471)
T ss_pred             HHHHHHHcC------CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC---------
Confidence            999999866      678999999999999999  567899999999999999999999999999874311         


Q ss_pred             cCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhc
Q psy8454         681 HKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFG  760 (936)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~  760 (936)
                                                                                          .++.+++++|++
T Consensus       164 --------------------------------------------------------------------~~~~~iv~~Ll~  175 (471)
T PHA03095        164 --------------------------------------------------------------------NANVELLRLLID  175 (471)
T ss_pred             --------------------------------------------------------------------CCCHHHHHHHHH
Confidence                                                                                234566776665


Q ss_pred             CCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCcccccc
Q psy8454         761 LSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL--GHYDLVRLLINYRADINIVTR  838 (936)
Q Consensus       761 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~--g~~~~v~~LL~~g~~v~~~~~  838 (936)
                                                         .|++++..+..|.||||.|+..  ++.++++.|+++|++++.++ 
T Consensus       176 -----------------------------------~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d-  219 (471)
T PHA03095        176 -----------------------------------AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD-  219 (471)
T ss_pred             -----------------------------------cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccC-
Confidence                                               4455677789999999999875  78999999999999999999 


Q ss_pred             cCCCcHHHHHHhCCCH--HHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHH
Q psy8454         839 VKQLTPLHIACQNNNL--SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ  916 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~~--~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~  916 (936)
                      ..|.||||+|+..|+.  .+++.|++.| +++|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|.|||++|+
T Consensus       220 ~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~  298 (471)
T PHA03095        220 MLGNTPLHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV  298 (471)
T ss_pred             CCCCCHHHHHHhcCCchHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            8999999999999975  6888999998 999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHhhhCCCc
Q psy8454         917 QMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       917 ~~g~~~iv~~Ll~~~~~~  934 (936)
                      ..|+.+++++|++++|.+
T Consensus       299 ~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        299 RNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HhCCHHHHHHHHHhCCCH
Confidence            999999999999998875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.6e-39  Score=363.23  Aligned_cols=310  Identities=20%  Similarity=0.217  Sum_probs=267.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHH--cCCHH
Q psy8454         459 KLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAAL--YGRIK  536 (936)
Q Consensus       459 ~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~  536 (936)
                      +++.++..|+.+.++.+++....                                      ..+.++||.++.  .++.+
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~~--------------------------------------~g~~~~Lh~~~~~~~~~~~   53 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIEP--------------------------------------SGNYHILHAYCGIKGLDER   53 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccCC--------------------------------------CCCChHHHHHHHhcCCCHH
Confidence            47899999999999999976321                                      124689998774  44789


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC--cHHHHHHHHhccccc
Q psy8454         537 VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG--HETCVKALIYFNEQE  614 (936)
Q Consensus       537 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~eiv~~Ll~~~~~~  614 (936)
                      ++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|   
T Consensus        54 iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G---  130 (446)
T PHA02946         54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG---  130 (446)
T ss_pred             HHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC---
Confidence            999999999999999999999999999999999999999999999999999999999998866  489999999876   


Q ss_pred             ccccCccc-ccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454         615 VLNLNINA-VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK  693 (936)
Q Consensus       615 ~~~~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~  693 (936)
                         ++++. .+..|.|||+ |+..|+.+++++|++.|++++..|..|.||||+|+.                        
T Consensus       131 ---adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~------------------------  182 (446)
T PHA02946        131 ---AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLM------------------------  182 (446)
T ss_pred             ---CCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHH------------------------
Confidence               46664 6889999997 666799999999999999999999999999998742                        


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454         694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH  773 (936)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~  773 (936)
                                                                           ..+++.+++++|++             
T Consensus       183 -----------------------------------------------------~~~~~~~~v~~Ll~-------------  196 (446)
T PHA02946        183 -----------------------------------------------------SDNPKASTISWMMK-------------  196 (446)
T ss_pred             -----------------------------------------------------hcCCCHHHHHHHHH-------------
Confidence                                                                 12333455565554             


Q ss_pred             ccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCcccccccCCCcHHHHHHhC
Q psy8454         774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG--HYDLVRLLINYRADINIVTRVKQLTPLHIACQN  851 (936)
Q Consensus       774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g--~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~  851 (936)
                                            .|++++..|.+|.||||+|+.+|  +.+++++|++ |++++..+ ..|.||||+|+..
T Consensus       197 ----------------------~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d-~~G~TpLh~A~~~  252 (446)
T PHA02946        197 ----------------------LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQN-KFGDSPLTLLIKT  252 (446)
T ss_pred             ----------------------cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCC-CCCCCHHHHHHHh
Confidence                                  56778999999999999999986  8899999995 99999998 8999999999999


Q ss_pred             CC-HHHHHHHHhcCCCCCC--------------------CCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCC
Q psy8454         852 NN-LSIVRLLLAAKQCNVN--------------------AQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQ  909 (936)
Q Consensus       852 g~-~~iv~~LL~~g~~dvn--------------------~~d-~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~  909 (936)
                      ++ .+++++|+.+| ++++                    ..+ ..|.||||+|+++|+.++|++|+++|+       .|.
T Consensus       253 ~~~~~~~~~Ll~~g-~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~  324 (446)
T PHA02946        253 LSPAHLINKLLSTS-NVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICE  324 (446)
T ss_pred             CChHHHHHHHHhCC-CCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccc
Confidence            88 58999999987 4332                    221 357899999999999999999999885       478


Q ss_pred             cHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         910 TCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       910 T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      ||||+|+..++.+++++|+.+|+.+.
T Consensus       325 t~L~~A~~~~~~~~v~~Ll~~ga~~n  350 (446)
T PHA02946        325 DAMYYAVLSEYETMVDYLLFNHFSVD  350 (446)
T ss_pred             cHHHHHHHhCHHHHHHHHHHCCCCCC
Confidence            99999999999999999999998764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-39  Score=373.33  Aligned_cols=293  Identities=26%  Similarity=0.305  Sum_probs=264.0

Q ss_pred             HHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC---CHHH
Q psy8454         461 FEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG---RIKV  537 (936)
Q Consensus       461 ~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~  537 (936)
                      ..|...+++++|+.|++.|.+.+.                                 ++..|.||||+|+..|   +.++
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~---------------------------------~~~~g~t~Lh~a~~~~~~~~~~i   65 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNF---------------------------------RGEYGKTPLHLYLHYSSEKVKDI   65 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCccc---------------------------------CCCCCCCHHHHHHHhcCCChHHH
Confidence            567899999999999999876432                                 6778999999999999   9999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhC-cHHHHHHHHhCCCCCCcCCCCCCcHHHHHH--HcCcHHHHHHHHhccccc
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRG-HQNVLLLLLHSGASINLTDNEGNTALHLAT--NNGHETCVKALIYFNEQE  614 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~~eiv~~Ll~~~~~~  614 (936)
                      +++|++.|+++|.++..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+|+  ..++.+++++|+++|   
T Consensus        66 v~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g---  142 (471)
T PHA03095         66 VRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG---  142 (471)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC---
Confidence            99999999999999999999999999999 599999999999999999999999999999  567899999999865   


Q ss_pred             ccccCcccccCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCC
Q psy8454         615 VLNLNINAVNNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVP  692 (936)
Q Consensus       615 ~~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~  692 (936)
                         ++++..+..|.||||+|+..+  +.+++++|++.|++++..+..|.||+|+++..                      
T Consensus       143 ---ad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~----------------------  197 (471)
T PHA03095        143 ---ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQS----------------------  197 (471)
T ss_pred             ---CCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHH----------------------
Confidence               678899999999999999876  68999999999999999999999999987531                      


Q ss_pred             CCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCC
Q psy8454         693 KEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNAC  772 (936)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~  772 (936)
                                                                             ..+..++++.|+             
T Consensus       198 -------------------------------------------------------~~~~~~i~~~Ll-------------  209 (471)
T PHA03095        198 -------------------------------------------------------FKPRARIVRELI-------------  209 (471)
T ss_pred             -------------------------------------------------------CCCcHHHHHHHH-------------
Confidence                                                                   123344555555             


Q ss_pred             cccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCH--HHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454         773 HPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHY--DLVRLLINYRADINIVTRVKQLTPLHIACQ  850 (936)
Q Consensus       773 ~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~--~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~  850 (936)
                                            +.|++++.+|..|.||||+|+..|+.  .+++.|++.|++++..+ ..|.||||+|+.
T Consensus       210 ----------------------~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d-~~g~TpLh~A~~  266 (471)
T PHA03095        210 ----------------------RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN-RYGQTPLHYAAV  266 (471)
T ss_pred             ----------------------HcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHH
Confidence                                  45677899999999999999999975  68899999999999999 899999999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCccc
Q psy8454         851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH  906 (936)
Q Consensus       851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~  906 (936)
                      .|+.+++++|++.| +|+|.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       267 ~~~~~~v~~LL~~g-ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~~  321 (471)
T PHA03095        267 FNNPRACRRLIALG-ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA  321 (471)
T ss_pred             cCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999 99999999999999999999999999999999999876554

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=371.58  Aligned_cols=262  Identities=34%  Similarity=0.502  Sum_probs=212.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH-----HHHhCcHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHY-----AATRGHQNVLLLLLHSGASINLTDNEGNTAL  592 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-----A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L  592 (936)
                      .+..+.||||.|+..|+.+++++|+++|++++..+..|.||||+     |+..|+.+++++|++.|++++..|..|.|||
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL  110 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPL  110 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchh
Confidence            56778999999999999999999999999999999999999999     9999999999999999999999999999999


Q ss_pred             HHHH--HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCcccCCCChhhhhh
Q psy8454         593 HLAT--NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNAN  668 (936)
Q Consensus       593 ~~A~--~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  668 (936)
                      |+|+  ..|+.+++++|+++|      ++++..+..|.||||+|++.|  +.+++++|+++|++++..            
T Consensus       111 ~~A~~~~~~~~~iv~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~------------  172 (480)
T PHA03100        111 LYAISKKSNSYSIVEYLLDNG------ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK------------  172 (480)
T ss_pred             hHHHhcccChHHHHHHHHHcC------CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc------------
Confidence            9999  999999999999865      578889999999999999999  999999999998876654            


Q ss_pred             chhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHH
Q psy8454         669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIE  748 (936)
Q Consensus       669 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~  748 (936)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (480)
T PHA03100        173 --------------------------------------------------------------------------------  172 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8454         749 NNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN  828 (936)
Q Consensus       749 ~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~  828 (936)
                                                                             +..|.||||+|+..|+.+++++|++
T Consensus       173 -------------------------------------------------------d~~g~tpL~~A~~~~~~~iv~~Ll~  197 (480)
T PHA03100        173 -------------------------------------------------------NRYGYTPLHIAVEKGNIDVIKFLLD  197 (480)
T ss_pred             -------------------------------------------------------cCCCCCHHHHHHHhCCHHHHHHHHH
Confidence                                                                   3455666666666667777777777


Q ss_pred             CCCCcccccccCC------CcHHHHHHhCCC--HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         829 YRADINIVTRVKQ------LTPLHIACQNNN--LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       829 ~g~~v~~~~~~~g------~TpLh~A~~~g~--~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      +|++++..+ ..|      .||||+|+..|+  .+++++|++.| +++|.+|..|.||||+|+..|+.+++++|+++||+
T Consensus       198 ~ga~~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        198 NGADINAGD-IETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN  275 (480)
T ss_pred             cCCCccCCC-CCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            776666665 455      667777777776  77777777766 67777777777777777777777777777777777


Q ss_pred             CcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         901 PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       901 ~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      ++.+|..|.||+++|++.++.+++++|+++|+.+
T Consensus       276 ~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        276 PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCH
Confidence            7777777777777777777777777777766653

>KOG0510|consensus

Probab=100.00  E-value=4e-39  Score=353.67  Aligned_cols=326  Identities=28%  Similarity=0.360  Sum_probs=275.2

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy8454         516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA  595 (936)
Q Consensus       516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A  595 (936)
                      ...|..|+||||+|+.....+.+++|++.|++++.++..+.+|+|+|+..|+.+.++.|+++|++++..|..|.||||.|
T Consensus        82 ~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A  161 (929)
T KOG0510|consen   82 YAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLA  161 (929)
T ss_pred             hhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHH-----CCCCCCCcccCCCChhhhhhch
Q psy8454         596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD-----HGANPTLENKRKVTPLQNANNL  670 (936)
Q Consensus       596 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-----~ga~~~~~d~~g~t~l~~a~~~  670 (936)
                      |..++.|..+.|++.+      +++...|.+|.+|+|.|++.|..++.+..+.     ++..++..+..+.+|||.|+..
T Consensus       162 ~~~~~~E~~k~Li~~~------a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~  235 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKG------ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG  235 (929)
T ss_pred             HhcChHHHHHHHHhcC------CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc
Confidence            9999999888888866      4667788899999999999999999999988     6778888899999999999999


Q ss_pred             hHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcC
Q psy8454         671 HVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENN  750 (936)
Q Consensus       671 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g  750 (936)
                      +.++.++..+..++.........                               -.....--...+..+.+|||.|+++|
T Consensus       236 g~~e~lk~~L~n~~~~a~~~~~~-------------------------------~~q~kelv~~~d~dg~tpLH~a~r~G  284 (929)
T KOG0510|consen  236 GDIEMLKMCLQNGKKIADVQLDA-------------------------------MQQEKELVNDEDNDGCTPLHYAARQG  284 (929)
T ss_pred             CCHHHHHHHHhCccccchhhhHH-------------------------------HHHHHHHhhcccccCCchHHHHHHcC
Confidence            99999988886554432111100                               00000011223445689999999999


Q ss_pred             cHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh-C
Q psy8454         751 EIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN-Y  829 (936)
Q Consensus       751 ~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~-~  829 (936)
                      .++.+.-|+.                                   .|++++.++.++.||||.||.+|+.++++-||+ .
T Consensus       285 ~~~svd~Ll~-----------------------------------~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~  329 (929)
T KOG0510|consen  285 GPESVDNLLG-----------------------------------FGASINSKNKDEESPLHFAAIYGRINTVERLLQES  329 (929)
T ss_pred             ChhHHHHHHH-----------------------------------cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCc
Confidence            9999998886                                   567789999999999999999999999999998 5


Q ss_pred             CCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCccc
Q psy8454         830 RADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVN---AQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH  906 (936)
Q Consensus       830 g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn---~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~  906 (936)
                      |..+-...|-.|+||||+|+++||..++++|++.| ++.+   ..|..|+||||+|+++|+..+|+.|+.+||+++.+|+
T Consensus       330 ~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~  408 (929)
T KOG0510|consen  330 DTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK  408 (929)
T ss_pred             CccccccccccCCCchhhhhhcCHHHHHHHHHhcC-hhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence            54433333489999999999999999999999999 5555   5699999999999999999999999999999999999


Q ss_pred             CCCcHHHH
Q psy8454         907 YGQTCLHM  914 (936)
Q Consensus       907 ~g~T~L~~  914 (936)
                      .|.||+++
T Consensus       409 ~g~SA~~~  416 (929)
T KOG0510|consen  409 KGKSAFDT  416 (929)
T ss_pred             cccccccc
Confidence            99999995

>KOG4177|consensus

Probab=100.00  E-value=3.3e-38  Score=370.19  Aligned_cols=453  Identities=26%  Similarity=0.343  Sum_probs=332.9

Q ss_pred             hHHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhH-HHhhhccCCCCcccCCC
Q psy8454         442 LKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEA-INLKHSQSKPTTQSMDD  520 (936)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  520 (936)
                      ....+.+..+...+-. +++.|...|+.+.++.++....+.... .....+|+..+...... ..........++...|.
T Consensus       163 ~~~~~ll~~~~~~d~l-~~~~~~~~~~~~~~~ll~~~~~~~~a~-~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~  240 (1143)
T KOG4177|consen  163 VACARLLLEYKAPDYL-RLHVAAHCGHARVAKLLLDKKADPNAS-ALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDE  240 (1143)
T ss_pred             hhhhHHhhhcccchhh-hhhHHhhcchHHHHhhhhcccCCcccc-ccCCCCchhhhccccccceeeeeeeccCcCCcccc
Confidence            4444445555544444 668899999999999999888776554 34445555444433333 33344677788889999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc
Q psy8454         521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH  600 (936)
Q Consensus       521 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  600 (936)
                      .|.||||.|+..|+.+++.+|+.+|+.++..+..|.||+|.|++.+..+++++|+++|+++..++..+.||+|.|...|+
T Consensus       241 ~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~  320 (1143)
T KOG4177|consen  241 SGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGH  320 (1143)
T ss_pred             cCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccCcccccCCC---------------------------------ChHHHHHHHhCCHHHHHHHH
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQG---------------------------------DSPLHAAARWGYTSIIQLLL  647 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g---------------------------------~t~L~~A~~~g~~~iv~~Ll  647 (936)
                      .+++++++..++      ..+..+..|                                 .||++.|++.|+.+++++++
T Consensus       321 ~~i~~~~l~~~~------~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll  394 (1143)
T KOG4177|consen  321 EEIVHLLLQAGA------TPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLL  394 (1143)
T ss_pred             HHHHHHHhhccC------CccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhh
Confidence            999999987653      334444444                                 45555555555555555555


Q ss_pred             HCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCccccccccccc-ccccccccc
Q psy8454         648 DHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNE-ANISNVNVR  726 (936)
Q Consensus       648 ~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  726 (936)
                      ..|++++...+.|.||+|.+...+..++++.++....             ........+..-..+..... ..-......
T Consensus       395 ~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA-------------~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~  461 (1143)
T KOG4177|consen  395 EAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGA-------------SPNAKAKLGYTPLHVAAKKGRYLQIARLLL  461 (1143)
T ss_pred             hccCCcccCCCCCcceeeehhhccCcceEEEEeccCC-------------ChhhHhhcCCChhhhhhhcccHhhhhhhHh
Confidence            5555555555555555555544444333333331000             00000111111111111111 111111223


Q ss_pred             cCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCC-CCCCcccchhcccchhhhhccCccccccCCCcccCCC
Q psy8454         727 EGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVP-DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNS  805 (936)
Q Consensus       727 ~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~  805 (936)
                      ......+.....+.++|+.|...|+.++++.+++.+...+.. ....+++..+....   .......++++|++++.++.
T Consensus       462 ~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~---~v~~~~~l~~~ga~v~~~~~  538 (1143)
T KOG4177|consen  462 QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED---TVKVAKILLEHGANVDLRTG  538 (1143)
T ss_pred             hcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh---hHHHHHHHhhcCCceehhcc
Confidence            334445566678889999999999999999999988555433 34445555444332   22334568899999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454         806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN  885 (936)
Q Consensus       806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~  885 (936)
                      .|+||||.||.+|+.++|++|+++|++++.++ +.|+||||.||..|+.+|+.+|+++| +++|+.|.+|.|||++|++.
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPLHIAVRL  616 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCccccccC-CCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchhHHHHHh
Confidence            99999999999999999999999999999999 99999999999999999999999999 99999999999999999999


Q ss_pred             CCHHHHHHHHHcCCC-----CcCcccCCCcHHHHHHHcCC
Q psy8454         886 NHTNLATLLLKSGAR-----PQIKNHYGQTCLHMAQQMTS  920 (936)
Q Consensus       886 g~~~iv~~LL~~Ga~-----~~~~d~~g~T~L~~A~~~g~  920 (936)
                      |+.+++++|+..|++     ....+..|.+|..++.....
T Consensus       617 g~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~  656 (1143)
T KOG4177|consen  617 GYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELDT  656 (1143)
T ss_pred             cccchhhHHHhccCccccccchhhhhcccChhhHHHHhhh
Confidence            999999999999998     66778899999999987655

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-37  Score=349.82  Aligned_cols=366  Identities=18%  Similarity=0.171  Sum_probs=264.8

Q ss_pred             cCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC--cHHHHHHHHhCCC--CCCcCCCCCC
Q psy8454         517 SMDDRGFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRG--HQNVLLLLLHSGA--SINLTDNEGN  589 (936)
Q Consensus       517 ~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~g~--~~~~~d~~g~  589 (936)
                      .+|..|.||||+|+..|   +.+++++|+++||+++.+|..|.||||+|+..+  +.+++++|++.|+  +++..+..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            47888999999999997   599999999999999999999999999999977  7999999999965  5577887789


Q ss_pred             cHHHHHHH--cCcHHHHHHHHhcccccccccCccccc-----CCCChHHHHHHHhCCHHHHHHHHHCCCCCC-------C
Q psy8454         590 TALHLATN--NGHETCVKALIYFNEQEVLNLNINAVN-----NQGDSPLHAAARWGYTSIIQLLLDHGANPT-------L  655 (936)
Q Consensus       590 t~L~~A~~--~g~~eiv~~Ll~~~~~~~~~~~~~~~~-----~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~-------~  655 (936)
                      +||+.++.  +++.++|++|+..+     +++++...     ..|.+|+++|+..++.++|++|+++|++++       .
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~-----~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~  190 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDK-----RIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCM  190 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhc-----CCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccc
Confidence            99998888  99999999999633     23444332     378999999999999999999999999984       1


Q ss_pred             cccCCC-Chhhhhh------chhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccC
Q psy8454         656 ENKRKV-TPLQNAN------NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREG  728 (936)
Q Consensus       656 ~d~~g~-t~l~~a~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  728 (936)
                      .+..+. |.|+++.      .....++++.+...+..                                           
T Consensus       191 ~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-------------------------------------------  227 (672)
T PHA02730        191 YDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-------------------------------------------  227 (672)
T ss_pred             ccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-------------------------------------------
Confidence            233333 4444332      22344444444422221                                           


Q ss_pred             CCCcchhhhhhHHHHHH--HHHcCcHHHHHHHhcCCcCCCCCCCC---C--cccch----hcccc-hhhhhccCcccccc
Q psy8454         729 VRPRNITEIKKVEQLFA--LIENNEIKLIKSYFGLSNEEKVPDNA---C--HPLCQ----CAKCK-EDVVESESRPVTDE  796 (936)
Q Consensus       729 ~~~~~~~~~~~~~~l~~--ai~~g~~~~vk~Ll~~~~~~~~~~~~---~--~~l~~----~~~~~-~~~~~~~~~~l~~~  796 (936)
                         -...+..+.+|||.  +...|+.+++++|+........-...   +  ..+..    .-+-. ......++.++++.
T Consensus       228 ---IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  304 (672)
T PHA02730        228 ---IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEG  304 (672)
T ss_pred             ---CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhc
Confidence               22233466778874  55567799999999732221111000   0  00000    00000 00111111122221


Q ss_pred             CCC---c----ccCCCCCCc---------------------HHHHHHHcC---CHHHHHHHHhCCCCcccccccCCCcHH
Q psy8454         797 CLN---I----NICNSDGYT---------------------ALHIATSLG---HYDLVRLLINYRADINIVTRVKQLTPL  845 (936)
Q Consensus       797 ~~d---~----n~~d~~g~t---------------------~L~~Aa~~g---~~~~v~~LL~~g~~v~~~~~~~g~TpL  845 (936)
                      +..   +    -..+..|.+                     .||.-.+++   +.+++++|+++||+++. . ..|.|||
T Consensus       305 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~-k-~~G~TpL  382 (672)
T PHA02730        305 RHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK-T-TDNNYPL  382 (672)
T ss_pred             cCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc-C-CCCCcHH
Confidence            111   0    114555544                     777777766   59999999999999997 4 6899999


Q ss_pred             HHHHhCCC----HHHHHHHHhcCC-CCCCCCCCCCCcHHHH---HHHcC---------CHHHHHHHHHcCCCCcCcccCC
Q psy8454         846 HIACQNNN----LSIVRLLLAAKQ-CNVNAQDYRGNTALHY---AAINN---------HTNLATLLLKSGARPQIKNHYG  908 (936)
Q Consensus       846 h~A~~~g~----~~iv~~LL~~g~-~dvn~~d~~g~TpL~~---A~~~g---------~~~iv~~LL~~Ga~~~~~d~~g  908 (936)
                      |+|+..++    .+++++|+++|. +++|.+|..|.||||.   |...+         ..+++++|+++||++|++|..|
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G  462 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNEN  462 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCC
Confidence            99998875    899999999983 3799999999999984   33332         2357999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         909 QTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       909 ~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      +||||+|+..++.+++++|+++|+.+.
T Consensus       463 ~TPLh~Aa~~~~~eive~LI~~GAdIN  489 (672)
T PHA02730        463 KTLLYYAVDVNNIQFARRLLEYGASVN  489 (672)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence            999999999999999999999999763

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-37  Score=362.03  Aligned_cols=358  Identities=16%  Similarity=0.166  Sum_probs=274.9

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHH----HHHHHHhCCCCCCcCCCCCCc
Q psy8454         518 MDDRGFTVLHVAALY---GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN----VLLLLLHSGASINLTDNEGNT  590 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~g~~~~~~d~~g~t  590 (936)
                      +|.+|.||||+|+..   |+.+++++|++.|++++..+..|.||||+|+..|+.+    +++.|++.+...+..+  ..+
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~  105 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNI  105 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cch
Confidence            688999999998655   8899999999999999999999999999999999854    5678887754444433  347


Q ss_pred             HHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHH--HHhCCHHHHHHHHHCCCCCCCccc---CC-----
Q psy8454         591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA--ARWGYTSIIQLLLDHGANPTLENK---RK-----  660 (936)
Q Consensus       591 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A--~~~g~~~iv~~Ll~~ga~~~~~d~---~g-----  660 (936)
                      ++++|+.+|+.++|++|+++|      +++|..+..|.|||+.|  +..|+.+++++|+++|++++..|.   .|     
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~G------adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHG------FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcC------CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccc
Confidence            788899999999999999865      78999999999999954  457899999999999999976543   23     


Q ss_pred             ------CChhhhhhc-----------hhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCccccccccccccccccc
Q psy8454         661 ------VTPLQNANN-----------LHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNV  723 (936)
Q Consensus       661 ------~t~l~~a~~-----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (936)
                            .||||+|+.           .+..++++.++..+..                                      
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad--------------------------------------  221 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK--------------------------------------  221 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC--------------------------------------
Confidence                  599999964           2356777777643322                                      


Q ss_pred             ccccCCCCcchhhhhhHHHHHHHHHcCcH--HHHHHHhcCCcCCCC-----CCCCCcccchhc------ccchhhhhccC
Q psy8454         724 NVREGVRPRNITEIKKVEQLFALIENNEI--KLIKSYFGLSNEEKV-----PDNACHPLCQCA------KCKEDVVESES  790 (936)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~l~~ai~~g~~--~~vk~Ll~~~~~~~~-----~~~~~~~l~~~~------~~~~~~~~~~~  790 (936)
                              ....+..+.+|||.|+.+|+.  ++|+.|+. +.+...     ....++++....      .+.......+.
T Consensus       222 --------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv  292 (661)
T PHA02917        222 --------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLV  292 (661)
T ss_pred             --------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHH
Confidence                    222334667899999999985  79999985 554432     223344443333      12222344556


Q ss_pred             ccccccCCCccc-------CCC------------CCCcHHHH---HHHcCC--HHHHHHHHhCCCCcccccccCCCcHHH
Q psy8454         791 RPVTDECLNINI-------CNS------------DGYTALHI---ATSLGH--YDLVRLLINYRADINIVTRVKQLTPLH  846 (936)
Q Consensus       791 ~~l~~~~~d~n~-------~d~------------~g~t~L~~---Aa~~g~--~~~v~~LL~~g~~v~~~~~~~g~TpLh  846 (936)
                      +.|++.|++...       .+.            .+.+++|.   |+..|.  .+++++|+++|++++.++ ..|.|+. 
T Consensus       293 ~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~-~~g~~~~-  370 (661)
T PHA02917        293 KLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEA-IHGYFRN-  370 (661)
T ss_pred             HHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCC-ccccchh-
Confidence            778888876421       112            23344444   334676  569999999999999887 8888854 


Q ss_pred             HHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC-----------------------CHHHHHHHHHcCCCCcC
Q psy8454         847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN-----------------------HTNLATLLLKSGARPQI  903 (936)
Q Consensus       847 ~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g-----------------------~~~iv~~LL~~Ga~~~~  903 (936)
                         ...+.+++++||..++++++.++..|+||||.|++.+                       ..+++++|+++||++|.
T Consensus       371 ---~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~  447 (661)
T PHA02917        371 ---INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINM  447 (661)
T ss_pred             ---hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCC
Confidence               3678889999998544887777778999999998543                       35678999999999999


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         904 KNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       904 ~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      +|..|+||||+|+..++.+++++|+++|+.+.
T Consensus       448 kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin  479 (661)
T PHA02917        448 IDKRGETLLHKAVRYNKQSLVSLLLESGSDVN  479 (661)
T ss_pred             CCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            99999999999999999999999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=348.27  Aligned_cols=328  Identities=22%  Similarity=0.315  Sum_probs=276.6

Q ss_pred             ccchhhhhhhHHHhhhhhcc-------cCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHH
Q psy8454         433 VEMSDLTTQLKVYNKYNNYK-------KISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAIN  505 (936)
Q Consensus       433 ~~~~~~~~~~~~~~~l~~~~-------~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (936)
                      +..+...|+.+.++.++..+       ...+.++|+.|+..|+.++|++|++.|++...                     
T Consensus         5 l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~---------------------   63 (434)
T PHA02874          5 LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINH---------------------   63 (434)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---------------------
Confidence            34556778888888887654       23567999999999999999999999876432                     


Q ss_pred             hhhccCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC
Q psy8454         506 LKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD  585 (936)
Q Consensus       506 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d  585 (936)
                                  .+..|.||||.|+..|+.+++++|+++|+++...          +......+++++|++.|++++.++
T Consensus        64 ------------~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g~d~n~~~  121 (434)
T PHA02874         64 ------------INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCGIDVNIKD  121 (434)
T ss_pred             ------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCcCCCCCCC
Confidence                        5677999999999999999999999999886532          233456899999999999999999


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhh
Q psy8454         586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ  665 (936)
Q Consensus       586 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~  665 (936)
                      ..|.||||+|+..|+.++|++|+++|      ++++.++..|.||||+|++.|+.+++++|++.|++++..+..|.||||
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~g------ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~  195 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFEYG------ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLH  195 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHhCC------CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            99999999999999999999999865      578889999999999999999999999999999999999998988877


Q ss_pred             hhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHH
Q psy8454         666 NANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFA  745 (936)
Q Consensus       666 ~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  745 (936)
                      +|+                                                                             
T Consensus       196 ~A~-----------------------------------------------------------------------------  198 (434)
T PHA02874        196 NAA-----------------------------------------------------------------------------  198 (434)
T ss_pred             HHH-----------------------------------------------------------------------------
Confidence            664                                                                             


Q ss_pred             HHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy8454         746 LIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL  825 (936)
Q Consensus       746 ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~  825 (936)
                        ..|+.+++++|++.                                   |++++..+..|.||||.|+..+. +.+.+
T Consensus       199 --~~g~~~iv~~Ll~~-----------------------------------g~~i~~~~~~g~TpL~~A~~~~~-~~i~~  240 (434)
T PHA02874        199 --EYGDYACIKLLIDH-----------------------------------GNHIMNKCKNGFTPLHNAIIHNR-SAIEL  240 (434)
T ss_pred             --HcCCHHHHHHHHhC-----------------------------------CCCCcCCCCCCCCHHHHHHHCCh-HHHHH
Confidence              45667777777754                                   44567778899999999999875 56666


Q ss_pred             HHhCCCCcccccccCCCcHHHHHHhCC-CHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcC
Q psy8454         826 LINYRADINIVTRVKQLTPLHIACQNN-NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN-HTNLATLLLKSGARPQI  903 (936)
Q Consensus       826 LL~~g~~v~~~~~~~g~TpLh~A~~~g-~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g-~~~iv~~LL~~Ga~~~~  903 (936)
                      |+ .|++++..+ ..|.||||+|+..+ +.+++++|+++| +|++.+|..|.||||+|++++ ..++++.|+.+++.++.
T Consensus       241 Ll-~~~~in~~d-~~G~TpLh~A~~~~~~~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~  317 (434)
T PHA02874        241 LI-NNASINDQD-IDGSTPLHHAINPPCDIDIIDILLYHK-ADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKE  317 (434)
T ss_pred             HH-cCCCCCCcC-CCCCCHHHHHHhcCCcHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhh
Confidence            66 689999988 89999999999876 899999999999 999999999999999999988 77899999999987766


Q ss_pred             cccCC-CcHHHHHHHcCCHHHHHHH
Q psy8454         904 KNHYG-QTCLHMAQQMTSLSLVRVL  927 (936)
Q Consensus       904 ~d~~g-~T~L~~A~~~g~~~iv~~L  927 (936)
                      .+..+ .+++..+...++....+++
T Consensus       318 ~~~~~~~~~~~~~~i~~~~~~~~~~  342 (434)
T PHA02874        318 ADKLKDSDFLEHIEIKDNKEFSDFI  342 (434)
T ss_pred             ccccchhHHHHHHHHhccchHHHHH
Confidence            55544 5567776666655554444

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=351.44  Aligned_cols=315  Identities=23%  Similarity=0.260  Sum_probs=257.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy8454         459 KLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVV  538 (936)
Q Consensus       459 ~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  538 (936)
                      .|+.++...+.+.+...++.......                             ..+.....+.||||+|+..|+.++|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~-----------------------------~~~~~~~~~~tPLh~A~~~g~~e~v   53 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTEN-----------------------------YSTSASLIPFIPLHQAVEARNLDVV   53 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhh-----------------------------hcCcccccCcchHHHHHHcCCHHHH
Confidence            46777888887666666666221111                             0111345688999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccccccc
Q psy8454         539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL  618 (936)
Q Consensus       539 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~  618 (936)
                      ++|+++|+++|.+|..|.||||+||..|+.+++++|++.+...+.  ..+.++++.|+..++.+++++|+..+.......
T Consensus        54 k~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~  131 (477)
T PHA02878         54 KSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI  131 (477)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC
Confidence            999999999999999999999999999999999999998766554  567899999999999999999997542110000


Q ss_pred             CcccccCCCChHHHHHHHh--CCHHHHHHHHHCCCCCCCcccC-CCChhhhhhchhHHHHHHHhhcCCCccccccCCCCC
Q psy8454         619 NINAVNNQGDSPLHAAARW--GYTSIIQLLLDHGANPTLENKR-KVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEK  695 (936)
Q Consensus       619 ~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~ga~~~~~d~~-g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~  695 (936)
                      +        ...+..+...  .+.+++++|+++|++++..+.. |.||||+|+                           
T Consensus       132 ~--------~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~---------------------------  176 (477)
T PHA02878        132 D--------LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYAT---------------------------  176 (477)
T ss_pred             c--------HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHH---------------------------
Confidence            0        0111111112  2356999999999999999888 888887664                           


Q ss_pred             CCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCccc
Q psy8454         696 VSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPL  775 (936)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l  775 (936)
                                                                          ..|+.+++++|++               
T Consensus       177 ----------------------------------------------------~~~~~~iv~~Ll~---------------  189 (477)
T PHA02878        177 ----------------------------------------------------ENKDQRLTELLLS---------------  189 (477)
T ss_pred             ----------------------------------------------------hCCCHHHHHHHHH---------------
Confidence                                                                4566677777665               


Q ss_pred             chhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhC-CCH
Q psy8454         776 CQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQN-NNL  854 (936)
Q Consensus       776 ~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~-g~~  854 (936)
                                          .|++++..+..|.||||.|+..|+.+++++|+++|++++.++ ..|.||||+|+.. ++.
T Consensus       190 --------------------~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d-~~g~TpLh~A~~~~~~~  248 (477)
T PHA02878        190 --------------------YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD-KCGNTPLHISVGYCKDY  248 (477)
T ss_pred             --------------------CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHhcCCH
Confidence                                456688899999999999999999999999999999999999 8999999999975 799


Q ss_pred             HHHHHHHhcCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcC-CHHHHHHHhhh
Q psy8454         855 SIVRLLLAAKQCNVNAQDY-RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT-SLSLVRVLTHE  930 (936)
Q Consensus       855 ~iv~~LL~~g~~dvn~~d~-~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g-~~~iv~~Ll~~  930 (936)
                      +++++|+++| +++|.++. .|.||||+|  .++.+++++|+++||+++..|..|.||||+|++.+ ..+++++|+.+
T Consensus       249 ~iv~~Ll~~g-advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        249 DILKLLLEHG-VDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             HHHHHHHHcC-CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            9999999999 99999986 799999999  57889999999999999999999999999999864 56788887755

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.5e-37  Score=355.27  Aligned_cols=271  Identities=31%  Similarity=0.426  Sum_probs=251.5

Q ss_pred             cCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHH----
Q psy8454         453 KISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHV----  528 (936)
Q Consensus       453 ~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~----  528 (936)
                      ...+.++|+.|+..|+.++|+.|++.|.+...                                 .+..|.||||+    
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~---------------------------------~~~~~~t~L~~~~~~   78 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADINS---------------------------------STKNNSTPLHYLSNI   78 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCCCC---------------------------------ccccCcCHHHHHHHH
Confidence            34678899999999999999999999876533                                 56678999999    


Q ss_pred             -HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH--HhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC--cHHH
Q psy8454         529 -AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA--TRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG--HETC  603 (936)
Q Consensus       529 -A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~ei  603 (936)
                       |+..|+.+++++|+++|++++..+..|.||||+|+  ..|+.+++++|++.|++++..+..|.||||+|+..|  +.++
T Consensus        79 ~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         79 KYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKI  158 (480)
T ss_pred             HHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHH
Confidence             99999999999999999999999999999999999  999999999999999999999999999999999999  9999


Q ss_pred             HHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCC
Q psy8454         604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKP  683 (936)
Q Consensus       604 v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~  683 (936)
                      +++|+++|      ++++..+..|.||||+|++.|+.+++++|+++|++++..+..|.++.++                 
T Consensus       159 v~~Ll~~g------~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~-----------------  215 (480)
T PHA03100        159 LKLLIDKG------VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF-----------------  215 (480)
T ss_pred             HHHHHHCC------CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH-----------------
Confidence            99999876      5788889999999999999999999999999999998887777666542                 


Q ss_pred             CccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCc
Q psy8454         684 KPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSN  763 (936)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~  763 (936)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (480)
T PHA03100        216 --------------------------------------------------------------------------------  215 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCcccccccCC
Q psy8454         764 EEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH--YDLVRLLINYRADINIVTRVKQ  841 (936)
Q Consensus       764 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~--~~~v~~LL~~g~~v~~~~~~~g  841 (936)
                                                                  .||||.|+..|+  .+++++|+++|++++..+ ..|
T Consensus       216 --------------------------------------------~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d-~~g  250 (480)
T PHA03100        216 --------------------------------------------ETPLHIAACYNEITLEVVNYLLSYGVPINIKD-VYG  250 (480)
T ss_pred             --------------------------------------------HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCC-CCC
Confidence                                                        479999999999  999999999999999998 899


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcc
Q psy8454         842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN  905 (936)
Q Consensus       842 ~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d  905 (936)
                      .||||+|+..|+.+++++|++.| +|+|.+|..|.||||+|++.|+.+++++|+++|++++..+
T Consensus       251 ~TpL~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        251 FTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHH
Confidence            99999999999999999999999 8999999999999999999999999999999999887644

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=350.63  Aligned_cols=279  Identities=21%  Similarity=0.228  Sum_probs=243.1

Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh--CcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC------cHHH
Q psy8454         532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATR--GHQNVLLLLLHSGASINLTDNEGNTALHLATNNG------HETC  603 (936)
Q Consensus       532 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g------~~ei  603 (936)
                      ....+++++|+++|+++|.. ..|.||||.++..  ++.++|++|+++|++++.++ .+.||||.|+.++      +.++
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~i   90 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKI   90 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHH
Confidence            47899999999999999998 6799999776654  37899999999999999886 5799999998754      5789


Q ss_pred             HHHHHhcccccccccCcccccCCCChHHHHHHHh---CCHHHHHHHHHCCCCC-CCcccCCCChhhhhhchhHHHHHHHh
Q psy8454         604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW---GYTSIIQLLLDHGANP-TLENKRKVTPLQNANNLHVAKLLNAY  679 (936)
Q Consensus       604 v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~-~~~d~~g~t~l~~a~~~~~~~ll~~~  679 (936)
                      +++|+++|      +++|.++..|.|||+.|+..   |+.+++++|+++|+++ +..+..|.||||+|+.          
T Consensus        91 v~~Ll~~G------adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~----------  154 (494)
T PHA02989         91 VKLLLKFG------ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE----------  154 (494)
T ss_pred             HHHHHHCC------CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH----------
Confidence            99999876      67899999999999988765   6799999999999999 8899999999987742          


Q ss_pred             hcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHh
Q psy8454         680 VHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYF  759 (936)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll  759 (936)
                                                                                         ...++.+++++|+
T Consensus       155 -------------------------------------------------------------------~~~~~~~iv~~Ll  167 (494)
T PHA02989        155 -------------------------------------------------------------------SFSVKKDVIKILL  167 (494)
T ss_pred             -------------------------------------------------------------------hccCCHHHHHHHH
Confidence                                                                               1234567777777


Q ss_pred             cCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCccc-CCCCCCcHHHHHHHcC----CHHHHHHHHhCCCCcc
Q psy8454         760 GLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI-CNSDGYTALHIATSLG----HYDLVRLLINYRADIN  834 (936)
Q Consensus       760 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~-~d~~g~t~L~~Aa~~g----~~~~v~~LL~~g~~v~  834 (936)
                      +                                   .|++++. .+..|.||||.|++++    +.+++++|+++|++++
T Consensus       168 ~-----------------------------------~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn  212 (494)
T PHA02989        168 S-----------------------------------FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE  212 (494)
T ss_pred             H-----------------------------------cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence            5                                   4455666 5788999999998765    8999999999999999


Q ss_pred             cccccCCCcHHHHHHhC------CCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCC
Q psy8454         835 IVTRVKQLTPLHIACQN------NNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG  908 (936)
Q Consensus       835 ~~~~~~g~TpLh~A~~~------g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g  908 (936)
                      ..+ ..|.||||.++..      +..+++++|+. + +++|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|
T Consensus       213 ~~~-~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        213 TNN-NGSESVLESFLDNNKILSKKEFKVLNFILK-Y-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             ccC-CccccHHHHHHHhchhhcccchHHHHHHHh-C-CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC
Confidence            998 6899999987654      45788888765 5 9999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         909 QTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       909 ~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +||||+|++.|+.++|++|++.+|.
T Consensus       290 ~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        290 DTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            9999999999999999999998874

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=311.46  Aligned_cols=116  Identities=21%  Similarity=0.292  Sum_probs=86.8

Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcc
Q psy8454         532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN  611 (936)
Q Consensus       532 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~  611 (936)
                      .++.+++++|+++|++  ..|..|.||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.++|++|+++|
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~G   84 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG   84 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCC
Confidence            4567778888877763  467778888888888888888888888887776654  578888888888888888888654


Q ss_pred             cccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcc
Q psy8454         612 EQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN  657 (936)
Q Consensus       612 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d  657 (936)
                            ++++.+|..|.||||+|+..|+.+++++|++.|++++..+
T Consensus        85 ------advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~  124 (284)
T PHA02791         85 ------MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG  124 (284)
T ss_pred             ------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccC
Confidence                  4667777778888888888888888888887777655443

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.2e-35  Score=337.71  Aligned_cols=284  Identities=22%  Similarity=0.272  Sum_probs=243.1

Q ss_pred             HHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHc--CCHHHHHHH
Q psy8454         464 ARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALY--GRIKVVDLV  541 (936)
Q Consensus       464 ~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~L  541 (936)
                      ....+.++|+.|++.|.+.+.                                 + ..|.|+||.++..  ++.++|++|
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~---------------------------------~-~~g~t~l~~~~~~~~~~~~iv~~L   56 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNE---------------------------------E-YRGNSILLLYLKRKDVKIKIVKLL   56 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCccc---------------------------------c-cCCCCHHHHHHhcCCCChHHHHHH
Confidence            346899999999999986543                                 3 4588998876654  479999999


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHhC------cHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc---CcHHHHHHHHhccc
Q psy8454         542 LELGADTNSQDLCGCSPLHYAATRG------HQNVLLLLLHSGASINLTDNEGNTALHLATNN---GHETCVKALIYFNE  612 (936)
Q Consensus       542 l~~g~~~~~~~~~g~t~L~~A~~~g------~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~---g~~eiv~~Ll~~~~  612 (936)
                      +++|+++|.++ .+.||||.|+..+      +.+++++|+++|++++.+|..|.||||.|+.+   |+.+++++|+++| 
T Consensus        57 l~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-  134 (494)
T PHA02989         57 IDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-  134 (494)
T ss_pred             HHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-
Confidence            99999999886 5799999998754      57899999999999999999999999988765   6799999999876 


Q ss_pred             ccccccCc-ccccCCCChHHHHHHHh--CCHHHHHHHHHCCCCCCC-cccCCCChhhhhhchhHHHHHHHhhcCCCcccc
Q psy8454         613 QEVLNLNI-NAVNNQGDSPLHAAARW--GYTSIIQLLLDHGANPTL-ENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYN  688 (936)
Q Consensus       613 ~~~~~~~~-~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~ga~~~~-~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~  688 (936)
                           +++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|.||++.|..                   
T Consensus       135 -----adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~-------------------  190 (494)
T PHA02989        135 -----INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR-------------------  190 (494)
T ss_pred             -----CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh-------------------
Confidence                 678 78899999999999865  589999999999999988 67899999987732                   


Q ss_pred             ccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCC
Q psy8454         689 YLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVP  768 (936)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~  768 (936)
                                                                              .++..++.+++++|++        
T Consensus       191 --------------------------------------------------------~~~~~~~~~iv~~Ll~--------  206 (494)
T PHA02989        191 --------------------------------------------------------NDIDVISIKVIKYLIK--------  206 (494)
T ss_pred             --------------------------------------------------------cccccccHHHHHHHHh--------
Confidence                                                                    2233467788887775        


Q ss_pred             CCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC------CHHHHHHHHhCCCCcccccccCCC
Q psy8454         769 DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG------HYDLVRLLINYRADINIVTRVKQL  842 (936)
Q Consensus       769 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g------~~~~v~~LL~~g~~v~~~~~~~g~  842 (936)
                                                 .|+++|..+..|.||||.++..+      ..+++++|+. |++++.++ ..|.
T Consensus       207 ---------------------------~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d-~~G~  257 (494)
T PHA02989        207 ---------------------------KGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKD-KKGF  257 (494)
T ss_pred             ---------------------------CCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCC-CCCC
Confidence                                       55667888888999999877653      5678887665 79999999 8999


Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy8454         843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP  901 (936)
Q Consensus       843 TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~  901 (936)
                      ||||+|+..|+.+++++|++.| +|+|.+|..|+||||+|++.|+.++|++|++.++..
T Consensus       258 TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        258 NPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             CHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            9999999999999999999999 999999999999999999999999999999987643

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.1e-35  Score=336.86  Aligned_cols=266  Identities=21%  Similarity=0.257  Sum_probs=192.1

Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh-----CcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454         521 RGFTVLHVAAL--YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATR-----GHQNVLLLLLHSGASINLTDNEGNTALH  593 (936)
Q Consensus       521 ~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-----g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  593 (936)
                      .|.|+++.+..  .++.+++++|+++|+++|..+..|.||||.|+..     ++.+++++|+++|++++.+|..|.||||
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh  114 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLY  114 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHH
Confidence            46677765554  4589999999999999999999999999999864     6789999999999999999999999999


Q ss_pred             HHHHcC---cHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCC---HHHHHHHHHCCCCCCCcc-cCCCChhhh
Q psy8454         594 LATNNG---HETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGY---TSIIQLLLDHGANPTLEN-KRKVTPLQN  666 (936)
Q Consensus       594 ~A~~~g---~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~ga~~~~~d-~~g~t~l~~  666 (936)
                      +|+.++   +.+++++|+++|      ++++..+..|.||||+|++.|+   .+++++|+++|++++..+ ..|.||+|+
T Consensus       115 ~a~~~~~~~~~~iv~~Ll~~G------advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~  188 (489)
T PHA02798        115 CLLSNGYINNLEILLFMIENG------ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHC  188 (489)
T ss_pred             HHHHcCCcChHHHHHHHHHcC------CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHH
Confidence            999876   789999999866      6889999999999999999998   999999999999988764 456677665


Q ss_pred             hhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHH
Q psy8454         667 ANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL  746 (936)
Q Consensus       667 a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  746 (936)
                      +..                                                                           .+
T Consensus       189 ~~~---------------------------------------------------------------------------~~  193 (489)
T PHA02798        189 YFK---------------------------------------------------------------------------YN  193 (489)
T ss_pred             HHH---------------------------------------------------------------------------hc
Confidence            521                                                                           11


Q ss_pred             HHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHH-------HHHHcCC
Q psy8454         747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALH-------IATSLGH  819 (936)
Q Consensus       747 i~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~-------~Aa~~g~  819 (936)
                      +..++.+++++|++                                   .|++++..+..|.++++       .+...++
T Consensus       194 ~~~~~~~ivk~Li~-----------------------------------~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~  238 (489)
T PHA02798        194 IDRIDADILKLFVD-----------------------------------NGFIINKENKSHKKKFMEYLNSLLYDNKRFK  238 (489)
T ss_pred             cccCCHHHHHHHHH-----------------------------------CCCCcccCCccccchHHHHHHHHHhhcccch
Confidence            22334455555553                                   33344555555555544       1233445


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA  899 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga  899 (936)
                      .+++.+|+. |+++|.++ ..|.||||+|+..|+.+++++|++.| +|+|.+|..|+||||+|++.|+.++++.|+++|+
T Consensus       239 ~~i~~~l~~-~~dvN~~d-~~G~TPL~~A~~~~~~~~v~~LL~~G-Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~  315 (489)
T PHA02798        239 KNILDFIFS-YIDINQVD-ELGFNPLYYSVSHNNRKIFEYLLQLG-GDINIITELGNTCLFTAFENESKFIFNSILNKKP  315 (489)
T ss_pred             HHHHHHHHh-cCCCCCcC-cCCccHHHHHHHcCcHHHHHHHHHcC-CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCC
Confidence            555555444 46666666 56666666666666666666666665 6666666666666666666666666666666666


Q ss_pred             CCcCcc
Q psy8454         900 RPQIKN  905 (936)
Q Consensus       900 ~~~~~d  905 (936)
                      +++..+
T Consensus       316 ~~~~i~  321 (489)
T PHA02798        316 NKNTIS  321 (489)
T ss_pred             CHHHHH
Confidence            655443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=304.32  Aligned_cols=218  Identities=24%  Similarity=0.343  Sum_probs=196.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN  597 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  597 (936)
                      .|.+|.||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            67789999999999999999999999999998764  7899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcccccccccCcccccCCC-ChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVNNQG-DSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL  676 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll  676 (936)
                      .|+.+++++|++++      ++++..+..| .||||+|+..|+.+++++|+++|.+..                      
T Consensus       104 ~g~~eivk~Ll~~g------adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~----------------------  155 (284)
T PHA02791        104 SGNMQTVKLFVKKN------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF----------------------  155 (284)
T ss_pred             cCCHHHHHHHHHCC------CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc----------------------
Confidence            99999999999866      5678888887 599999999999999999998753210                      


Q ss_pred             HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454         677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK  756 (936)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk  756 (936)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (284)
T PHA02791        156 --------------------------------------------------------------------------------  155 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccc
Q psy8454         757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIV  836 (936)
Q Consensus       757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~  836 (936)
                                                                  +  ...|.||||+|+.+|+.+++++|+++|++++..
T Consensus       156 --------------------------------------------d--~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~  189 (284)
T PHA02791        156 --------------------------------------------D--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTN  189 (284)
T ss_pred             --------------------------------------------c--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence                                                        0  124789999999999999999999999999998


Q ss_pred             cccCCCcH-HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         837 TRVKQLTP-LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       837 ~~~~g~Tp-Lh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      + ..|.|| ||+|+..|+.++|++|+++| +++|++|..| |+|      |+.|++++||++-++
T Consensus       190 d-~~g~t~~L~~Aa~~~~~e~v~lLl~~G-a~in~~~~~~-~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        190 N-SLLFIPDIKLAIDNKDLEMLQALFKYD-INIYSVNLEN-VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             c-CCCCChHHHHHHHcCCHHHHHHHHHCC-CCCccCcccC-ccC------CCHHHHHHHHHhhhh
Confidence            8 778776 99999999999999999999 9999999854 666      999999999997664

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=328.21  Aligned_cols=253  Identities=27%  Similarity=0.404  Sum_probs=226.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcH
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHE  601 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~  601 (936)
                      ..++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhc
Q psy8454         602 TCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVH  681 (936)
Q Consensus       602 eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~  681 (936)
                      +++++|++.++.     ..+..+..|.||||+|+..|+.+++++|+++|++++.                          
T Consensus        82 ~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~--------------------------  130 (413)
T PHA02875         82 KAVEELLDLGKF-----ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI--------------------------  130 (413)
T ss_pred             HHHHHHHHcCCc-----ccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC--------------------------
Confidence            999999987632     2244567799999999999999999999999887554                          


Q ss_pred             CCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcC
Q psy8454         682 KPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGL  761 (936)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~  761 (936)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (413)
T PHA02875        131 --------------------------------------------------------------------------------  130 (413)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCC
Q psy8454         762 SNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ  841 (936)
Q Consensus       762 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g  841 (936)
                                                               .+..|.||||+|+..|+.+++++|+++|++++..+ ..|
T Consensus       131 -----------------------------------------~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g  168 (413)
T PHA02875        131 -----------------------------------------PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED-CCG  168 (413)
T ss_pred             -----------------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCC
Confidence                                                     35567899999999999999999999999999988 899


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCc---ccCCCcHHHHHHH
Q psy8454         842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN-TALHYAAINNHTNLATLLLKSGARPQIK---NHYGQTCLHMAQQ  917 (936)
Q Consensus       842 ~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~-TpL~~A~~~g~~~iv~~LL~~Ga~~~~~---d~~g~T~L~~A~~  917 (936)
                      .||||+|+..|+.+++++|++.| ++++..+..|. ||+|+|+..|+.++|++|+++||+++..   +..|.||+++++.
T Consensus       169 ~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        169 CTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            99999999999999999999999 99999988875 7899999999999999999999999875   6678899998765


Q ss_pred             c---CCHHHHHHHh
Q psy8454         918 M---TSLSLVRVLT  928 (936)
Q Consensus       918 ~---g~~~iv~~Ll  928 (936)
                      .   ...++++.|+
T Consensus       248 ~~~~~~~~~~~~li  261 (413)
T PHA02875        248 MCTNLESEAIDALI  261 (413)
T ss_pred             hcCCcccHHHHHHH
Confidence            4   3456666555

>KOG0508|consensus

Probab=100.00  E-value=3.2e-36  Score=310.94  Aligned_cols=197  Identities=27%  Similarity=0.376  Sum_probs=168.7

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+-+||..|+++|+.++|++|+++-.......+                        .+..|.....|-+||..|+..|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~G------------------------sV~FDge~IegappLWaAsaAG   95 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGG------------------------SVRFDGETIEGAPPLWAASAAG   95 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCc------------------------eEEeCCcccCCCchhhHHhccC
Confidence            4556899999999999999999996433222111                        1123345677999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      |+++|+.|+++|+++|.....+.|||..||..|+.++|+||+++|+|++..|..|+|.||+||..||.+|++||++.|  
T Consensus        96 Hl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g--  173 (615)
T KOG0508|consen   96 HLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG--  173 (615)
T ss_pred             cHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhC--
Confidence            999999999999999998888999999999999999999999999999999999999999999999999999999865  


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhc
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVH  681 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~  681 (936)
                          +++|.++..|.|+||.|+..|+.+++++|+++|+.... |..|.|||..|...+..+++..+..
T Consensus       174 ----ADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  174 ----ADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ----CCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence                68999999999999999999999999999999987664 5559999999998888888877774

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=324.22  Aligned_cols=424  Identities=13%  Similarity=0.088  Sum_probs=288.7

Q ss_pred             HHHHHHHHCCCHHH--HHHHHHhcccCccCCCCCcccccccCCchhhHHH--hhhccCCCCcccCCCCCCcHHHHH-HHc
Q psy8454         458 TKLFEFARLGDGDK--VRAILQEENKKEDSESLPLCHPLCSCDDCEEAIN--LKHSQSKPTTQSMDDRGFTVLHVA-ALY  532 (936)
Q Consensus       458 ~~L~~A~~~G~~~~--v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~t~L~~A-~~~  532 (936)
                      +.|+..++.=+++.  .+.||+.|+++...  ....+|+...........  ..+.....+++..+.+|.+++|+- +.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n   82 (631)
T PHA02792          5 KILYDSCKTFNIDACSAQSLIESGANPLYE--YDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDN   82 (631)
T ss_pred             hHHHhHhhccchhHHHHHHHHHcCCCcccc--cCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhc
Confidence            34566666665544  36788888887662  444466655433222111  111223335566788899999854 578


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH-hCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcc
Q psy8454         533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAAT-RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN  611 (936)
Q Consensus       533 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~  611 (936)
                      |++|+|++|+++||++|.++..|.||+|+|+. .++.|++++|++.||+++..+..|.||++.-+.....  ..|=-.+.
T Consensus        83 ~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~  160 (631)
T PHA02792         83 IDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEY--YNWDDELD  160 (631)
T ss_pred             ccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccc--cchhhhcc
Confidence            89999999999999999999989999999966 6999999999999999999999999998766543211  00100000


Q ss_pred             cccccccCcccccCCCChHHHHHHHhC-------CHHHHHHHHHCCCCCCCcccCCCChhhhhhchh--HHHHHHHhhcC
Q psy8454         612 EQEVLNLNINAVNNQGDSPLHAAARWG-------YTSIIQLLLDHGANPTLENKRKVTPLQNANNLH--VAKLLNAYVHK  682 (936)
Q Consensus       612 ~~~~~~~~~~~~~~~g~t~L~~A~~~g-------~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~--~~~ll~~~~~~  682 (936)
                       +...+..+|..+..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+...  ..+++..+...
T Consensus       161 -~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        161 -DYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             -ccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence             01123346788889999999999999       899999999999999999999999999998666  55666655521


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHc--CcHHHHHHHhc
Q psy8454         683 PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIEN--NEIKLIKSYFG  760 (936)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~--g~~~~vk~Ll~  760 (936)
                      .-..   ..             ...-...+....-            .                ..+  =+..+|..|++
T Consensus       240 ~~~~---~~-------------~~~~l~~y~~~~~------------~----------------~~~~~id~~iv~~ll~  275 (631)
T PHA02792        240 NYSG---NE-------------LMNILSNYLRKQY------------R----------------NKNHKIDNYIVDKLLS  275 (631)
T ss_pred             cccc---cc-------------hHhHHHHHHHHHh------------c----------------cCccCccHHHHHHHHh
Confidence            1000   00             0000000000000            0                000  01123333333


Q ss_pred             CCcCCCCC---C---CCCc-------------ccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHH
Q psy8454         761 LSNEEKVP---D---NACH-------------PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYD  821 (936)
Q Consensus       761 ~~~~~~~~---~---~~~~-------------~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~  821 (936)
                      .+.....-   .   ....             -+.+.-...........+.+++.|++++.  ..+..+++.||..|+.+
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~e  353 (631)
T PHA02792        276 GHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPK  353 (631)
T ss_pred             CCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHH
Confidence            22210000   0   0000             00000000111223344677788887752  23556789999999999


Q ss_pred             HHHHHHhCCCCcccccccC--CCcHHHHHHhCCCH---HHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454         822 LVRLLINYRADINIVTRVK--QLTPLHIACQNNNL---SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK  896 (936)
Q Consensus       822 ~v~~LL~~g~~v~~~~~~~--g~TpLh~A~~~g~~---~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~  896 (936)
                      ++++|+++|++++..+ ..  +.||||+|+..+..   +++++|+++| +|+|.+|..|+||||+|+..++.+++++|++
T Consensus       354 IVelLIs~GADIN~kD-~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs  431 (631)
T PHA02792        354 VVEYILKNGNVVVEDD-DNIINIMPLFPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYYCIESHSVSLVEWLID  431 (631)
T ss_pred             HHHHHHHcCCchhhhc-CCCCChhHHHHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHHHHHcCCHHHHHHHHH
Confidence            9999999999999888 44  57999998877664   4689999999 9999999999999999999999999999999


Q ss_pred             cCCCCcCcccCCCcHHHHHHH----------cCCHHHHHHHhhhCCCc
Q psy8454         897 SGARPQIKNHYGQTCLHMAQQ----------MTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       897 ~Ga~~~~~d~~g~T~L~~A~~----------~g~~~iv~~Ll~~~~~~  934 (936)
                      +||+++.+|..|.|||++|+.          ....++++.|++++|.+
T Consensus       432 ~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        432 NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999976          22357799999999864

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-34  Score=330.94  Aligned_cols=304  Identities=19%  Similarity=0.248  Sum_probs=250.8

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+.+|||.|+..|+.++|+.|++.|++.+                                 .++..|.||||+|+..|
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn---------------------------------~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVN---------------------------------QPDHRDLTPLHIICKEP   81 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------CCCCCCCCHHHHHHHCc
Confidence            457789999999999999999999986543                                 36788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc--CcHHHHHHHHhcc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN--GHETCVKALIYFN  611 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~--g~~eiv~~Ll~~~  611 (936)
                      +.++++.|++.+.+.+.  ..+.+|++.|+..|+.+++++|+..+.+......  ...+..+...  .+.+++++|+++|
T Consensus        82 ~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~g  157 (477)
T PHA02878         82 NKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSYG  157 (477)
T ss_pred             cHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHcC
Confidence            99999999998766554  5678999999999999999999988654322110  1111111112  2356999999866


Q ss_pred             cccccccCcccccCC-CChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCcccccc
Q psy8454         612 EQEVLNLNINAVNNQ-GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL  690 (936)
Q Consensus       612 ~~~~~~~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~  690 (936)
                            ++++..+.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+                      
T Consensus       158 ------adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~----------------------  209 (477)
T PHA02878        158 ------ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV----------------------  209 (477)
T ss_pred             ------CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----------------------
Confidence                  678889988 999999999999999999999999999999999999987664                      


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCC
Q psy8454         691 VPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDN  770 (936)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~  770 (936)
                                                                               ..|+.+++++|++          
T Consensus       210 ---------------------------------------------------------~~~~~~iv~~Ll~----------  222 (477)
T PHA02878        210 ---------------------------------------------------------KHYNKPIVHILLE----------  222 (477)
T ss_pred             ---------------------------------------------------------HhCCHHHHHHHHH----------
Confidence                                                                     3556666666664          


Q ss_pred             CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCcccccccCCCcHHHHHH
Q psy8454         771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL-GHYDLVRLLINYRADINIVTRVKQLTPLHIAC  849 (936)
Q Consensus       771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~-g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~  849 (936)
                                               .|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+...|.||||+| 
T Consensus       223 -------------------------~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A-  276 (477)
T PHA02878        223 -------------------------NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS-  276 (477)
T ss_pred             -------------------------cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-
Confidence                                     5567889999999999999976 7999999999999999998855899999999 


Q ss_pred             hCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHc-----CCCCcCcccCCCcHHHHHHH
Q psy8454         850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN-HTNLATLLLKS-----GARPQIKNHYGQTCLHMAQQ  917 (936)
Q Consensus       850 ~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g-~~~iv~~LL~~-----Ga~~~~~d~~g~T~L~~A~~  917 (936)
                       .++.+++++|+++| +|+|.+|..|.||||+|++.+ ..+++++|+.+     +++++.++..|.++-..++.
T Consensus       277 -~~~~~~v~~Ll~~g-adin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i~  348 (477)
T PHA02878        277 -IKSERKLKLLLEYG-ADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCIT  348 (477)
T ss_pred             -ccCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHHh
Confidence             57889999999999 999999999999999999854 56778877754     56788888888776544443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.5e-33  Score=315.45  Aligned_cols=226  Identities=26%  Similarity=0.331  Sum_probs=208.4

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHH
Q psy8454         555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA  634 (936)
Q Consensus       555 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  634 (936)
                      .+++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|      ++++..+..+.||||.|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g------a~~~~~~~~~~t~L~~A   75 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG------AIPDVKYPDIESELHDA   75 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC------CCccccCCCcccHHHHH
Confidence            578999999999999999999999999999999999999999999999999999876      35566778899999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccc
Q psy8454         635 ARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSD  714 (936)
Q Consensus       635 ~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (936)
                      +..|+.+++++|++.|+...                                                            
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~~------------------------------------------------------------   95 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFAD------------------------------------------------------------   95 (413)
T ss_pred             HHCCCHHHHHHHHHcCCccc------------------------------------------------------------
Confidence            99999999999999876432                                                            


Q ss_pred             cccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCcccc
Q psy8454         715 VNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVT  794 (936)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  794 (936)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (413)
T PHA02875         96 --------------------------------------------------------------------------------   95 (413)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q psy8454         795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYR  874 (936)
Q Consensus       795 ~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~  874 (936)
                            +..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..
T Consensus        96 ------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~-~~g~tpLh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~  167 (413)
T PHA02875         96 ------DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN-TDKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDCC  167 (413)
T ss_pred             ------ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCC
Confidence                  1225568999999999999999999999999999998 89999999999999999999999999 999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCC-cHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQ-TCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       875 g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~-T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      |.||||+|+..|+.+++++|+++|++++..+..|. ||+++|+..|+.+++++|+++|+.+
T Consensus       168 g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            99999999999999999999999999999988875 8999999999999999999999875

>KOG4412|consensus

Probab=100.00  E-value=2.2e-33  Score=254.73  Aligned_cols=213  Identities=30%  Similarity=0.402  Sum_probs=175.9

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhCCC-CCCcCCC-CCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHH
Q psy8454         555 GCSPLHYAATRGHQNVLLLLLHSGA-SINLTDN-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH  632 (936)
Q Consensus       555 g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~d~-~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  632 (936)
                      +.++.+.+|......-++-+++... +++.++. +|+||||+||..|+.++|.+|++     ..++.+|.+|..|+||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls-----q~nv~~ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLS-----QPNVKPDDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHh-----cCCCCCCCccccCCchhh
Confidence            4456677777666666666766665 5666655 78888888888888888888886     245677788888888888


Q ss_pred             HHHHhCCHHHHHHHHHC-CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCccccc
Q psy8454         633 AAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLD  711 (936)
Q Consensus       633 ~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (936)
                      +|+..|+.++|+.|+.+ |++                                                           
T Consensus        78 ia~s~g~~evVk~Ll~r~~ad-----------------------------------------------------------   98 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGAD-----------------------------------------------------------   98 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCC-----------------------------------------------------------
Confidence            88888888888888775 443                                                           


Q ss_pred             ccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCc
Q psy8454         712 YSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESR  791 (936)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  791 (936)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (226)
T KOG4412|consen   99 --------------------------------------------------------------------------------   98 (226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC
Q psy8454         792 PVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQ  871 (936)
Q Consensus       792 ~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~  871 (936)
                              +|.++..|+|+||+|+..|+.+++++|+++|+.++..+ ..|.||||.|+.-|+++++++|+..| +.+|.+
T Consensus        99 --------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD-~~~qtplHRAAavGklkvie~Li~~~-a~~n~q  168 (226)
T KOG4412|consen   99 --------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKD-KQGQTPLHRAAAVGKLKVIEYLISQG-APLNTQ  168 (226)
T ss_pred             --------cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccc-cccCchhHHHHhccchhhHHHHHhcC-CCCCcc
Confidence                    56667788888999999999999999999999999998 89999999999999999999999999 999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHH
Q psy8454         872 DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS  922 (936)
Q Consensus       872 d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~  922 (936)
                      |..|+||||.|.-.|+.++..+|+++||+++..|+.| ||+..|+..=...
T Consensus       169 Dk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~l~~a  218 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNELLEA  218 (226)
T ss_pred             cccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHHHHHH
Confidence            9999999999988899999999999999999999988 9988776543333

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-32  Score=317.17  Aligned_cols=285  Identities=22%  Similarity=0.266  Sum_probs=233.2

Q ss_pred             hHHHhhhhhcccC----CChHHHH--HHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCc
Q psy8454         442 LKVYNKYNNYKKI----SSLTKLF--EFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT  515 (936)
Q Consensus       442 ~~~~~~l~~~~~~----~~~~~L~--~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (936)
                      .+.++.|+..++.    .+.+++.  .+...++.++|+.|++.|++.+                                
T Consensus        18 ~~~v~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn--------------------------------   65 (489)
T PHA02798         18 LSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPSTDIVKLFINLGANVN--------------------------------   65 (489)
T ss_pred             HHHHHHHHhcCChhhhcccchHHHHHHhCCCCCHHHHHHHHHCCCCCC--------------------------------
Confidence            4455555544321    2234443  3444568999999999987654                                


Q ss_pred             ccCCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC---cHHHHHHHHhCCCCCCcCCCC
Q psy8454         516 QSMDDRGFTVLHVAALY-----GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG---HQNVLLLLLHSGASINLTDNE  587 (936)
Q Consensus       516 ~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~g~~~~~~d~~  587 (936)
                       .++..|.||||.|+.+     ++.+++++|+++|+++|.+|..|.||||+|+..+   +.+++++|+++|++++.+|..
T Consensus        66 -~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~  144 (489)
T PHA02798         66 -GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD  144 (489)
T ss_pred             -CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCC
Confidence             3678899999999865     6799999999999999999999999999999986   789999999999999999999


Q ss_pred             CCcHHHHHHHcCc---HHHHHHHHhcccccccccCccccc-CCCChHHHHHHHh----CCHHHHHHHHHCCCCCCCcccC
Q psy8454         588 GNTALHLATNNGH---ETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW----GYTSIIQLLLDHGANPTLENKR  659 (936)
Q Consensus       588 g~t~L~~A~~~g~---~eiv~~Ll~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~----g~~~iv~~Ll~~ga~~~~~d~~  659 (936)
                      |.||||+|++.|+   .+++++|++.|      ++++..+ ..|.||||.+++.    ++.+++++|+++|++++..+..
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~g------adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~  218 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKG------VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKS  218 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhC------CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcc
Confidence            9999999999998   99999999866      5677764 5789999999875    4899999999999999998888


Q ss_pred             CCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhh
Q psy8454         660 KVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKK  739 (936)
Q Consensus       660 g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (936)
                      +.++++...                                                                       
T Consensus       219 ~~~~~~~~l-----------------------------------------------------------------------  227 (489)
T PHA02798        219 HKKKFMEYL-----------------------------------------------------------------------  227 (489)
T ss_pred             ccchHHHHH-----------------------------------------------------------------------
Confidence            888765221                                                                       


Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH  819 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~  819 (936)
                       ..+..+...+..+++++++                                    .++++|.+|..|.||||+|+.+|+
T Consensus       228 -~~l~~~~~~~~~~i~~~l~------------------------------------~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        228 -NSLLYDNKRFKKNILDFIF------------------------------------SYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             -HHHHhhcccchHHHHHHHH------------------------------------hcCCCCCcCcCCccHHHHHHHcCc
Confidence             0111222334455555544                                    357799999999999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRG  875 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g  875 (936)
                      .+++++|+++|++++..+ ..|.||||+|+..|+.++++.|++.+ ++++..+...
T Consensus       271 ~~~v~~LL~~GAdin~~d-~~G~TpL~~A~~~~~~~iv~~lL~~~-~~~~~i~~~~  324 (489)
T PHA02798        271 RKIFEYLLQLGGDINIIT-ELGNTCLFTAFENESKFIFNSILNKK-PNKNTISYTY  324 (489)
T ss_pred             HHHHHHHHHcCCcccccC-CCCCcHHHHHHHcCcHHHHHHHHccC-CCHHHHHHHH
Confidence            999999999999999999 89999999999999999999999998 7777654433

>KOG4412|consensus

Probab=100.00  E-value=3.7e-32  Score=246.74  Aligned_cols=208  Identities=30%  Similarity=0.407  Sum_probs=180.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCC-CCCCCCC-CCCcHHHHHHHhCcHHHHHHHH-hCCCCCCcCCCCCCcHHHHHHHc
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGA-DTNSQDL-CGCSPLHYAATRGHQNVLLLLL-HSGASINLTDNEGNTALHLATNN  598 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~d~~g~t~L~~A~~~  598 (936)
                      +.++.+.++...-..-++-+++... +.+.++. +|+||||+||.-|+.+++.+|+ +.+..+|.+|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4677888888777777777776644 6777766 8999999999999999999999 66788899999999999999999


Q ss_pred             CcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHH
Q psy8454         599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA  678 (936)
Q Consensus       599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~  678 (936)
                      |+.++|+.|+..     .++++|..++.|.|+||+|+..|+.+|+++|++.|+.++.                       
T Consensus        83 g~~evVk~Ll~r-----~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~-----------------------  134 (226)
T KOG4412|consen   83 GNDEVVKELLNR-----SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI-----------------------  134 (226)
T ss_pred             CcHHHHHHHhcC-----CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc-----------------------
Confidence            999999999985     3578999999999999999999999999999999876554                       


Q ss_pred             hhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHH
Q psy8454         679 YVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSY  758 (936)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~L  758 (936)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (226)
T KOG4412|consen  135 --------------------------------------------------------------------------------  134 (226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc
Q psy8454         759 FGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR  838 (936)
Q Consensus       759 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~  838 (936)
                                                                  +|..|+||||.||.-|.+.++++|+..|+.+|..+ 
T Consensus       135 --------------------------------------------kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qD-  169 (226)
T KOG4412|consen  135 --------------------------------------------KDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQD-  169 (226)
T ss_pred             --------------------------------------------cccccCchhHHHHhccchhhHHHHHhcCCCCCccc-
Confidence                                                        36667788888888899999999999999999888 


Q ss_pred             cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHH
Q psy8454         839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAI  884 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~  884 (936)
                      +.|+||||.|...|+.++..+|+++| +++...|+.| ||+-.|+-
T Consensus       170 k~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  170 KYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             ccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHHH
Confidence            89999999998888999999999998 8999999888 88877754

>KOG0508|consensus

Probab=99.98  E-value=1.7e-31  Score=276.17  Aligned_cols=178  Identities=26%  Similarity=0.349  Sum_probs=161.0

Q ss_pred             ccccchhhhhhhHHHhhhhhcc---------------cCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccc
Q psy8454         431 PTVEMSDLTTQLKVYNKYNNYK---------------KISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLC  495 (936)
Q Consensus       431 ~~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  495 (936)
                      ...-+++..|+.+++++|+...               .-.+-+|||.|+..|++++||.|++.+++.+.           
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-----------  112 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND-----------  112 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc-----------
Confidence            4566888999999999999842               12456899999999999999999999976544           


Q ss_pred             cCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH
Q psy8454         496 SCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL  575 (936)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  575 (936)
                                            ....++|||-.||.-|++++|++|+++|+|++..|..|.|.||+||.+||.+|+++|+
T Consensus       113 ----------------------tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl  170 (615)
T KOG0508|consen  113 ----------------------TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLL  170 (615)
T ss_pred             ----------------------ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHH
Confidence                                  4556789999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHH
Q psy8454         576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD  648 (936)
Q Consensus       576 ~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  648 (936)
                      +.|+|+|.++..|+|+||.|+++|+.++++.|+.+++.       -..|..|.|||..|+..|+.++|++|+.
T Consensus       171 e~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-------i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  171 EQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK-------IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce-------eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999999998743       2456779999999999999999999996

>KOG0509|consensus

Probab=99.96  E-value=4e-29  Score=271.37  Aligned_cols=123  Identities=33%  Similarity=0.510  Sum_probs=75.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCc
Q psy8454         523 FTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD-NEGNTALHLATNNGH  600 (936)
Q Consensus       523 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~  600 (936)
                      ..-+..|++.|.++.++.|++. |.+++..|..|.|+||+|+.+++.+++++|+++|+++|..+ .-|-||||+|+.+|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4456666666666666666666 66666666666666666666666666666666666666655 345556666666666


Q ss_pred             HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCC
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA  651 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga  651 (936)
                      ..+|++|+++|      ++++.+|.+|.||||.|++.|+..+|-+|+.+|+
T Consensus       125 ~~vv~lLlqhG------Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~  169 (600)
T KOG0509|consen  125 ISVVDLLLQHG------ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA  169 (600)
T ss_pred             HHHHHHHHHcC------CCCceecCCCCcHHHHHHHhCchHHHHHHHHhcc
Confidence            66655555544      3455555555555555555555555555555443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=5e-28  Score=272.02  Aligned_cols=370  Identities=13%  Similarity=0.074  Sum_probs=255.0

Q ss_pred             CChHHH-HHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHH-c
Q psy8454         455 SSLTKL-FEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAAL-Y  532 (936)
Q Consensus       455 ~~~~~L-~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~  532 (936)
                      ++.+++ ..|..+|++|+|+.|+++|++.+.                                 ++..|.||+|+|+. .
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~---------------------------------~~n~~~~~l~ya~~~~  116 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGLEINS---------------------------------IKNGINIVEKYATTSN  116 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCCCccc---------------------------------ccCCCCcceeEeecCC
Confidence            444556 467899999999999999987543                                 45568899999965 6


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcH-HHHHHHH--hCCCCCCcCCCCCCcHHHHHHHcC-------cHH
Q psy8454         533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ-NVLLLLL--HSGASINLTDNEGNTALHLATNNG-------HET  602 (936)
Q Consensus       533 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll--~~g~~~~~~d~~g~t~L~~A~~~g-------~~e  602 (936)
                      |+.|++++|+++||++++.+..|.|||+.-+.+... +.-..+-  +.|-.++..|..|.||||+|+.++       +.+
T Consensus       117 ~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~  196 (631)
T PHA02792        117 PNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLD  196 (631)
T ss_pred             CChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHH
Confidence            999999999999999999999999999876653221 1111111  234556788899999999999999       899


Q ss_pred             HHHHHHhcccccccccCcccccCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCcccCCCChhhhhhchh--------H
Q psy8454         603 CVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNANNLH--------V  672 (936)
Q Consensus       603 iv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~--------~  672 (936)
                      ++++|+++|      ++++..+..|.||||+|+.+.  +.+++++|++.--+..  +  .+-.|..-.+..        .
T Consensus       197 v~k~Li~~g------~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~--~--~~~~l~~y~~~~~~~~~~~id  266 (631)
T PHA02792        197 VINYLISHE------KEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN--E--LMNILSNYLRKQYRNKNHKID  266 (631)
T ss_pred             HHHHHHhCC------CCcCccCCCCChHHHHHHHcccchHHHHHHHHhcccccc--c--hHhHHHHHHHHHhccCccCcc
Confidence            999999976      577889999999999999999  8999999998421110  0  111111111111        1


Q ss_pred             HHHHHHhhcCCCc--cccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcC
Q psy8454         673 AKLLNAYVHKPKP--LYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENN  750 (936)
Q Consensus       673 ~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g  750 (936)
                      ..++..++....+  ..+...+.            ...         ..+.....        .-...-...|+.-..++
T Consensus       267 ~~iv~~ll~~~~~~~i~~~~~~~------------~~~---------~~~~~~~~--------~~~~~~q~~l~~Yl~~~  317 (631)
T PHA02792        267 NYIVDKLLSGHDTFYILELCNSL------------RNN---------IIISSILK--------RYTDSIQDLLSEYVSYH  317 (631)
T ss_pred             HHHHHHHHhCCCccchhhhhhhh------------hhh---------hHHHHHHH--------HHhHHHHHHHHHHHhcC
Confidence            1133334332221  11000000            000         00000000        00001112333344444


Q ss_pred             --cHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCC--CcHHHHHHHcCCH---HHH
Q psy8454         751 --EIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDG--YTALHIATSLGHY---DLV  823 (936)
Q Consensus       751 --~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g--~t~L~~Aa~~g~~---~~v  823 (936)
                        +.+++++|++.|....... ....+..+   .......+.+.|+.+|+++|..|..|  .||||.|+..+..   +++
T Consensus       318 ~v~ieiIK~LId~Ga~~~r~~-~~n~~~~A---a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        318 TVYINVIKCMIDEGATLYRFK-HINKYFQK---FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             CccHHHHHHHHHCCCccccCC-cchHHHHH---HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence              6889999999888764221 12222222   11223344567888999999999875  6999998877664   468


Q ss_pred             HHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHH---cC-------CHHHHHH
Q psy8454         824 RLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAI---NN-------HTNLATL  893 (936)
Q Consensus       824 ~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~---~g-------~~~iv~~  893 (936)
                      ++|+++|++++.++ ..|.||||+|+..++.+++++|+++| +++|.+|..|+||||+|+.   .+       ..++++.
T Consensus       394 klLIs~GADIN~kD-~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~l  471 (631)
T PHA02792        394 KLCKPYIDDINKID-KHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVILAHACIPEIAELYIKILEI  471 (631)
T ss_pred             HHHHhcCCcccccc-ccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99999999999999 89999999999999999999999998 9999999999999999976   22       2567999


Q ss_pred             HHHcCCCCc
Q psy8454         894 LLKSGARPQ  902 (936)
Q Consensus       894 LL~~Ga~~~  902 (936)
                      |+++|.++.
T Consensus       472 LLs~~p~i~  480 (631)
T PHA02792        472 ILSKLPTIE  480 (631)
T ss_pred             HHhcCCChh
Confidence            999998765

>KOG0509|consensus

Probab=99.95  E-value=5.4e-28  Score=262.59  Aligned_cols=209  Identities=36%  Similarity=0.491  Sum_probs=168.1

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccccc-CCCChHHH
Q psy8454         555 GCSPLHYAATRGHQNVLLLLLHS-GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLH  632 (936)
Q Consensus       555 g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~-~~g~t~L~  632 (936)
                      ...-+..|++.|..+.|+.|++. |.+++..|.+|.|+||+|+.+++.+++++|+++|      +++|..+ .-+.||||
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g------advn~~gG~l~stPLH  117 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHG------ADVNAIGGVLGSTPLH  117 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcC------CCccccCCCCCCCcch
Confidence            44568899999999999999999 9999999999999999999999999999999976      5788887 66899999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccc
Q psy8454         633 AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDY  712 (936)
Q Consensus       633 ~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (936)
                      +|+++|+..+|++|+++||+++..                                                        
T Consensus       118 WAar~G~~~vv~lLlqhGAdpt~~--------------------------------------------------------  141 (600)
T KOG0509|consen  118 WAARNGHISVVDLLLQHGADPTLK--------------------------------------------------------  141 (600)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCcee--------------------------------------------------------
Confidence            999999999999999999997765                                                        


Q ss_pred             cccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCcc
Q psy8454         713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP  792 (936)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  792 (936)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (600)
T KOG0509|consen  142 --------------------------------------------------------------------------------  141 (600)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC
Q psy8454         793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD  872 (936)
Q Consensus       793 l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d  872 (936)
                                 |..|.+|||.||+.|+..+|-+||.+|++++.+| ..|+||||+|+.+|....+..||..+ +.++.+|
T Consensus       142 -----------D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D-~~grTpLmwAaykg~~~~v~~LL~f~-a~~~~~d  208 (600)
T KOG0509|consen  142 -----------DKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRD-NNGRTPLMWAAYKGFALFVRRLLKFG-ASLLLTD  208 (600)
T ss_pred             -----------cCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcC-CCCCCHHHHHHHhcccHHHHHHHHhc-ccccccc
Confidence                       4455666677777777777777777777777777 67777777777777766677777776 6666666


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHc
Q psy8454         873 -YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM  918 (936)
Q Consensus       873 -~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~  918 (936)
                       ..|+||||.|+..|+..++++|++.|++.+..|.+|.||+++|.+.
T Consensus       209 ~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  209 DNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence             6777777777777777777755566677777777777777777665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=255.81  Aligned_cols=233  Identities=15%  Similarity=0.084  Sum_probs=187.4

Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHH--cCcHHHHHHHHh
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASIN------LTDNEGNTALHLATN--NGHETCVKALIY  609 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~------~~d~~g~t~L~~A~~--~g~~eiv~~Ll~  609 (936)
                      .++++.+|+++|....+|     +|+..+..+++++|+++|++++      .++..++|+||+|+.  .|+.++|++|++
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~  139 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD  139 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH
Confidence            589999999999888777     8999999999999999999988      778889999999999  899999999999


Q ss_pred             cccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccc
Q psy8454         610 FNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNY  689 (936)
Q Consensus       610 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~  689 (936)
                      +|      ++++..  .+.||||.|+..|+.+++++|+++|++...   .+.++++                        
T Consensus       140 ~G------ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n---~~~~~l~------------------------  184 (437)
T PHA02795        140 HG------AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDEN---DVKLDLY------------------------  184 (437)
T ss_pred             CC------CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccc---cccchhh------------------------
Confidence            77      456653  458999999999999999999999985321   1112221                        


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCC
Q psy8454         690 LVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD  769 (936)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~  769 (936)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (437)
T PHA02795        185 --------------------------------------------------------------------------------  184 (437)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHH
Q psy8454         770 NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIAC  849 (936)
Q Consensus       770 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~  849 (936)
                                                        +..|.|++|.|+.+++.+++++|+++|++++..+ ..|.||||+|+
T Consensus       185 ----------------------------------~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD-~~G~TpLh~Aa  229 (437)
T PHA02795        185 ----------------------------------KIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLD-AGGRTLLYRAI  229 (437)
T ss_pred             ----------------------------------hhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCC-CCCCCHHHHHH
Confidence                                              1235578888888888999999999999998888 88889999999


Q ss_pred             hCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC--------HHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH
Q psy8454         850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH--------TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSL  921 (936)
Q Consensus       850 ~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~--------~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~  921 (936)
                      ..|+.+++++|+++| +++|.+|..|+||||+|+..|+        .+++++|+++|++++..+..   .+..  ...+.
T Consensus       230 ~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~--~~~n~  303 (437)
T PHA02795        230 YAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN--TIENH  303 (437)
T ss_pred             HcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc--ccchH
Confidence            999999999999888 8999999999999999998884        68999999998888764322   2111  11256


Q ss_pred             HHHHHHhhhC
Q psy8454         922 SLVRVLTHEA  931 (936)
Q Consensus       922 ~iv~~Ll~~~  931 (936)
                      ++++.|++.+
T Consensus       304 ~~ik~lI~y~  313 (437)
T PHA02795        304 DVIKLCIKYF  313 (437)
T ss_pred             HHHHHHHHHH
Confidence            7777776543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-26  Score=250.46  Aligned_cols=205  Identities=19%  Similarity=0.154  Sum_probs=180.9

Q ss_pred             HHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcc------cccCCCChHHHHHHH--hCCHH
Q psy8454         570 VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN------AVNNQGDSPLHAAAR--WGYTS  641 (936)
Q Consensus       570 iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~  641 (936)
                      ..++++.+|++++..+.+|     +|+..+..+++++|+++|      ++++      .++..++|+||+|+.  .|+.+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~------~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~e  132 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKN------YMEDIFSIIIKNCNSVQDLLLYYLSNAYVEID  132 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcc------cccchhhhhhhccccccHHHHHHHHhcCCCHH
Confidence            3578999999999888777     899999999999999876      4555      677889999999999  88999


Q ss_pred             HHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCccccccccccccccc
Q psy8454         642 IIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANIS  721 (936)
Q Consensus       642 iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (936)
                      +|++|+++|++++..                                                                 
T Consensus       133 iV~~LI~~GADIn~~-----------------------------------------------------------------  147 (437)
T PHA02795        133 IVDFMVDHGAVIYKI-----------------------------------------------------------------  147 (437)
T ss_pred             HHHHHHHCCCCCCCC-----------------------------------------------------------------
Confidence            999999999987642                                                                 


Q ss_pred             ccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcc
Q psy8454         722 NVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNIN  801 (936)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n  801 (936)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (437)
T PHA02795        148 --------------------------------------------------------------------------------  147 (437)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccc-----ccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy8454         802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVT-----RVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN  876 (936)
Q Consensus       802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~-----~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~  876 (936)
                          ++.||||.|+.+|+.+++++|+++|++.....     +..|.|++|.|+..++.+++++|+++| +|+|.+|..|+
T Consensus       148 ----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~kD~~G~  222 (437)
T PHA02795        148 ----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQLDAGGR  222 (437)
T ss_pred             ----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcCCCCCC
Confidence                23579999999999999999999998543222     134779999999999999999999999 99999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcC--------CHHHHHHHhhhCCCcC
Q psy8454         877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT--------SLSLVRVLTHEAPFVL  935 (936)
Q Consensus       877 TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g--------~~~iv~~Ll~~~~~~~  935 (936)
                      ||||+|+..|+.++|++|+++||+++.+|..|.||||+|+..|        |.+++++|+++++++.
T Consensus       223 TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        223 TLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999998        4699999999998763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.3e-26  Score=229.77  Aligned_cols=112  Identities=18%  Similarity=0.284  Sum_probs=100.8

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHHhCCCCcccccccCCCcHHHHHHh--CCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         806 DGYTALHIATSL---GHYDLVRLLINYRADINIVTRVKQLTPLHIACQ--NNNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       806 ~g~t~L~~Aa~~---g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~--~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      .|.||||+|+..   ++.+++++|+++|++++.++ ..|.||||+|+.  .++.+++++|++.| ++++.+|..|.||||
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d-~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh  163 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-EDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILY  163 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHH
Confidence            567777776653   47999999999999999998 899999999886  47899999999999 999999999999999


Q ss_pred             H-HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcC
Q psy8454         881 Y-AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT  919 (936)
Q Consensus       881 ~-A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g  919 (936)
                      . |+..++.+++++|+++|++++.+|..|+|||++|+.++
T Consensus       164 ~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        164 SYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            5 56788999999999999999999999999999998765

>KOG4369|consensus

Probab=99.94  E-value=1.9e-27  Score=265.80  Aligned_cols=322  Identities=24%  Similarity=0.252  Sum_probs=252.1

Q ss_pred             hHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHH
Q psy8454         457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIK  536 (936)
Q Consensus       457 ~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  536 (936)
                      .++|-.||+.|+-|+|+.|+.+|++...                                 +|..|.+||.+|+..||..
T Consensus       758 ~t~LT~acaggh~e~vellv~rganieh---------------------------------rdkkgf~plImaatagh~t  804 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEH---------------------------------RDKKGFVPLIMAATAGHIT  804 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccc---------------------------------cccccchhhhhhcccCchH
Confidence            4567778888888888888877766543                                 6777788888888888888


Q ss_pred             HHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccc
Q psy8454         537 VVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV  615 (936)
Q Consensus       537 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~  615 (936)
                      +|+.|+++.++++.. |..+.|+|.+||..|+.++|++||..|++-..++....|||.+|...|..++|+.|+..|..  
T Consensus       805 vV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~Gse--  882 (2131)
T KOG4369|consen  805 VVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSE--  882 (2131)
T ss_pred             HHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccc--
Confidence            888888777777654 56677788888888888888888888877777777777888888888888888888876521  


Q ss_pred             cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcc-cCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCC
Q psy8454         616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN-KRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKE  694 (936)
Q Consensus       616 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d-~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~  694 (936)
                        ++-..-...|-.||++|..+||.+.++.|++.|.+++..- -+.+|+|..                            
T Consensus       883 --InSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltl----------------------------  932 (2131)
T KOG4369|consen  883 --INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTL----------------------------  932 (2131)
T ss_pred             --cccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceee----------------------------
Confidence              2222334456778888888888888888888777766532 122344433                            


Q ss_pred             CCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcc
Q psy8454         695 KVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHP  774 (936)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~  774 (936)
                                                                         |+-.|..+++..|+.              
T Consensus       933 ---------------------------------------------------a~fqgr~evv~lLLa--------------  947 (2131)
T KOG4369|consen  933 ---------------------------------------------------ALFQGRPEVVFLLLA--------------  947 (2131)
T ss_pred             ---------------------------------------------------ccccCcchHHHHHHH--------------
Confidence                                                               344555666666554              


Q ss_pred             cchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc-cCCCcHHHHHHhCCC
Q psy8454         775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR-VKQLTPLHIACQNNN  853 (936)
Q Consensus       775 l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~-~~g~TpLh~A~~~g~  853 (936)
                                           ..+++..+.+.|-|||+-+|..|.+|+=++||..|+|+|...- ....|+|-+++..||
T Consensus       948 ---------------------~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh 1006 (2131)
T KOG4369|consen  948 ---------------------AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGH 1006 (2131)
T ss_pred             ---------------------HhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCc
Confidence                                 3344677788999999999999999999999999999987542 334589999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       854 ~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      ...|..|+... +-+..++++|+|+|.+|+-.|++..+.+|++++||++..|.+..|+++.|.+.||+.||+|...-
T Consensus      1007 ~kfv~~lln~~-atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1007 TKFVPKLLNGD-ATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             hhhhHHhhCCc-cceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            99999999865 89999999999999999999999999999999999999999999999999999999999997643

>KOG0502|consensus

Probab=99.93  E-value=8.5e-26  Score=211.50  Aligned_cols=128  Identities=30%  Similarity=0.439  Sum_probs=89.6

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL  879 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL  879 (936)
                      +|.+|..|.|||.+|+..|++++|++||+.|+++.... +...|+|.+|+..|..+||++||..+ .|+|..|.+|-|||
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lg-k~resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTpL  230 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALG-KYRESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTPL  230 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhh-hhhhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCcee
Confidence            45556666666666666666666666666666666666 56667777777777777777777776 77777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      -+|++.|+.+||+.|++.||+++..+..|.++++.|+..|+. +|+..+++
T Consensus       231 lyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             eeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            777777777777777777777777777777777777777775 55555543

>smart00167 VPS9 Domain present in VPS9

Probab=99.93  E-value=7.9e-26  Score=200.93  Aligned_cols=102  Identities=24%  Similarity=0.428  Sum_probs=93.8

Q ss_pred             chHHHHHHHhcccccCCcchhHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccC
Q psy8454         298 TVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFS  377 (936)
Q Consensus       298 ~~~~a~~~l~~i~~~~~p~~Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~  377 (936)
                      +|+.|+.||++|+.++||+||+.||++||+.|++....  .....+|||||||+||||||||+||+|.||++||++|+.+
T Consensus         1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~--~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~~~   78 (117)
T smart00167        1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLET--QSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFLEP   78 (117)
T ss_pred             CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc--ccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHCCc
Confidence            58999999999999999999999999999999996653  2356789999999999999999999999999999999988


Q ss_pred             CCCCcccCcchhhHHHHHHHHHHHHcC
Q psy8454         378 QSSNVCIDQDSFLITSLEASIEHIKSG  404 (936)
Q Consensus       378 ~~~~~~~~~~~y~lt~~~aa~~~i~~~  404 (936)
                      +..   .||.|||||+|++|+.||++-
T Consensus        79 ~~l---~gE~gY~lT~l~aAv~fi~~l  102 (117)
T smart00167       79 SLL---TGEGGYYLTSLSAALALIKGL  102 (117)
T ss_pred             ccc---ccHHHHHHHHHHHHHHHHHHC
Confidence            765   699999999999999999864

Domain present in yeast vacuolar sorting protein 9 and other proteins.

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.9e-24  Score=219.81  Aligned_cols=176  Identities=20%  Similarity=0.190  Sum_probs=156.5

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      +...+||+.|++.|+.+.|+.|++...                                    ..+..|.||||+|+..+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~n------------------------------------~~~~~g~TpLh~a~~~~   62 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFVN------------------------------------DCNDLYETPIFSCLEKD   62 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhhh------------------------------------ccCccCCCHHHHHHHcC
Confidence            456789999999999999999997532                                    15667999999999855


Q ss_pred             --CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHh---CcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH--cCcHHHHH
Q psy8454         534 --RIKVVDLVLELGADTNSQD-LCGCSPLHYAATR---GHQNVLLLLLHSGASINLTDNEGNTALHLATN--NGHETCVK  605 (936)
Q Consensus       534 --~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~--~g~~eiv~  605 (936)
                        +.+++++|+++|+++|.++ ..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.++++
T Consensus        63 ~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~  142 (209)
T PHA02859         63 KVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIK  142 (209)
T ss_pred             CCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHH
Confidence              8999999999999999997 4899999998764   47999999999999999999999999999876  46899999


Q ss_pred             HHHhcccccccccCcccccCCCChHHHH-HHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchh
Q psy8454         606 ALIYFNEQEVLNLNINAVNNQGDSPLHA-AARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLH  671 (936)
Q Consensus       606 ~Ll~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  671 (936)
                      +|+++|      ++++.+|..|.||||. |+..++.+++++|++.|++++.+|..|.||+++|...+
T Consensus       143 ~Li~~g------adin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        143 LLIDSG------VSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHcC------CCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999865      6789999999999995 56678999999999999999999999999999997543

>KOG0507|consensus

Probab=99.92  E-value=1.1e-24  Score=238.78  Aligned_cols=271  Identities=27%  Similarity=0.338  Sum_probs=224.8

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      +-|..|++.||.+.+..+|++......  ...                  ........+..|.+|.|+||.|+.+|+.++
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~--~l~------------------~~trsds~n~qd~~gfTalhha~Lng~~~i   64 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSG--LLF------------------FTTRSDSHNLQDYSGFTLLHHAVLNGQNQI   64 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCC--CCC------------------CCCCCccccccCccchhHHHHHHhcCchHH
Confidence            468899999999999999988544110  000                  012234566688899999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN  617 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~  617 (936)
                      +++|++..+-++..|..|.+|||+|++.|+.++++.|+.++..+|..+..|.||||.|++.||.+++.+|+.++      
T Consensus        65 s~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~------  138 (854)
T KOG0507|consen   65 SKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKN------  138 (854)
T ss_pred             HHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcC------
Confidence            99999999999999999999999999999999999999999889999999999999999999999999999876      


Q ss_pred             cCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCC
Q psy8454         618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVS  697 (936)
Q Consensus       618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  697 (936)
                      .+.-..|+.+.|+|..|++.|+.++++.|+..  +....-                                        
T Consensus       139 adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~--~~~~~~----------------------------------------  176 (854)
T KOG0507|consen  139 ADPFIRNNSKETVLDLASRFGRAEVVQMLLQK--KFPVQS----------------------------------------  176 (854)
T ss_pred             CCccccCcccccHHHHHHHhhhhHHHHHHhhh--ccchhh----------------------------------------
Confidence            45567889999999999999999999999986  111100                                        


Q ss_pred             CCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccch
Q psy8454         698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQ  777 (936)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~  777 (936)
                                                                                  +.                  
T Consensus       177 ------------------------------------------------------------~~------------------  178 (854)
T KOG0507|consen  177 ------------------------------------------------------------SL------------------  178 (854)
T ss_pred             ------------------------------------------------------------cc------------------
Confidence                                                                        00                  


Q ss_pred             hcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHH
Q psy8454         778 CAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV  857 (936)
Q Consensus       778 ~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv  857 (936)
                                       ..|  -..++-.+.+|||.|+++|+.++++.|++.|.++|..+ ..| |+||.|+..|..++|
T Consensus       179 -----------------~~~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t-~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  179 -----------------RVG--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT-EDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             -----------------cCC--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc-ccc-hhhhhHhhcCcchhh
Confidence                             000  12335567789999999999999999999999999988 777 999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHH
Q psy8454         858 RLLLAAKQCNVNAQDYRGNTALHYAAIN---NHTNLATLLLK  896 (936)
Q Consensus       858 ~~LL~~g~~dvn~~d~~g~TpL~~A~~~---g~~~iv~~LL~  896 (936)
                      .+|++.| .+.++++.+|+|+|.+-...   ...+++.++..
T Consensus       238 r~ll~~g-in~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  238 RFLLEIG-INTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             hHHHhhc-cccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            9999999 99999999999999887653   45566666654

>KOG0507|consensus

Probab=99.91  E-value=6.8e-24  Score=232.59  Aligned_cols=257  Identities=30%  Similarity=0.390  Sum_probs=210.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcC-------------CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCc
Q psy8454         524 TVLHVAALYGRIKVVDLVLELG-------------ADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNT  590 (936)
Q Consensus       524 t~L~~A~~~g~~~~v~~Ll~~g-------------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t  590 (936)
                      +-|.-|++.|+.+.+..|++..             .+.|..|.+|.|+||.|+.+|+.+++++|+++.+-++..|.+|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            4577899999999999999741             346778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhch
Q psy8454         591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL  670 (936)
Q Consensus       591 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  670 (936)
                      |||+|+.+|+.++++.|+..+      ..+|..+..|.||||.|++.||.+++.+|+.+|+++...|..+.|++..|+..
T Consensus        85 plhlaaw~g~~e~vkmll~q~------d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQT------DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF  158 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcc------cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh
Confidence            999999999999999999865      57899999999999999999999999999999999988877777776666554


Q ss_pred             hHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcC
Q psy8454         671 HVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENN  750 (936)
Q Consensus       671 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g  750 (936)
                      +....+..++                                                                      
T Consensus       159 gr~~Vvq~ll----------------------------------------------------------------------  168 (854)
T KOG0507|consen  159 GRAEVVQMLL----------------------------------------------------------------------  168 (854)
T ss_pred             hhhHHHHHHh----------------------------------------------------------------------
Confidence            4444333322                                                                      


Q ss_pred             cHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy8454         751 EIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYR  830 (936)
Q Consensus       751 ~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g  830 (936)
                               ..                                                .|-          +..+...|
T Consensus       169 ---------~~------------------------------------------------~~~----------~~~~~~~~  181 (854)
T KOG0507|consen  169 ---------QK------------------------------------------------KFP----------VQSSLRVG  181 (854)
T ss_pred             ---------hh------------------------------------------------ccc----------hhhcccCC
Confidence                     10                                                000          00011222


Q ss_pred             CCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCc
Q psy8454         831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT  910 (936)
Q Consensus       831 ~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T  910 (936)
                        -..++ -.+.+|||+|+++||.++++.|++.| .|+|.....| |+||.|+..|..++|++|++.|.+.+++|.+|.|
T Consensus       182 --~~~~~-~~~~~plHlaakngh~~~~~~ll~ag-~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qt  256 (854)
T KOG0507|consen  182 --DIKRP-FPAIYPLHLAAKNGHVECMQALLEAG-FDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQT  256 (854)
T ss_pred             --CCCCC-CCCcCCcchhhhcchHHHHHHHHhcC-CCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchH
Confidence              11222 56778999999999999999999999 9999887665 7999999999999999999999999999999999


Q ss_pred             HHHHHHHc---CCHHHHHHHh
Q psy8454         911 CLHMAQQM---TSLSLVRVLT  928 (936)
Q Consensus       911 ~L~~A~~~---g~~~iv~~Ll  928 (936)
                      +|++-...   ...+++-++.
T Consensus       257 aldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  257 ALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             HHHHHHhcchhhhhhhhhhhh
Confidence            99987665   3345555543

>KOG4369|consensus

Probab=99.91  E-value=1.1e-24  Score=244.09  Aligned_cols=295  Identities=28%  Similarity=0.314  Sum_probs=258.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcC-CCCCCcHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT-DNEGNTALHLAT  596 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-d~~g~t~L~~A~  596 (936)
                      ...+-.|+|..||..||.|++++|+.+|+++..+|..|.+||.+|+..||..+|+.|+.+-++++.+ |..+.|+|.+||
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            3446679999999999999999999999999999999999999999999999999999999999865 778899999999


Q ss_pred             HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcc--cCCCChhhhhhchhHHH
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN--KRKVTPLQNANNLHVAK  674 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d--~~g~t~l~~a~~~~~~~  674 (936)
                      ..|+.++|+.||..+      ++-..++....|||..|...|+.++|..|+..|+.++.+.  +.|.             
T Consensus       833 sggr~~vvelLl~~g------ankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgi-------------  893 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAG------ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGI-------------  893 (2131)
T ss_pred             CCCcchHHHHHHHhh------ccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCc-------------
Confidence            999999999999865      5667788888999999999999999999999998777542  2333             


Q ss_pred             HHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHH
Q psy8454         675 LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKL  754 (936)
Q Consensus       675 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~  754 (936)
                                                                                        .||+.|..+|+-..
T Consensus       894 ------------------------------------------------------------------sPLmlatmngh~~a  907 (2131)
T KOG4369|consen  894 ------------------------------------------------------------------SPLMLATMNGHQAA  907 (2131)
T ss_pred             ------------------------------------------------------------------chhhhhhhccccHH
Confidence                                                                              35666667777777


Q ss_pred             HHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCc
Q psy8454         755 IKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI-CNSDGYTALHIATSLGHYDLVRLLINYRADI  833 (936)
Q Consensus       755 vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~-~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v  833 (936)
                      ++.|++.+.+                                   +|. ...+.+|+|-+|+..|+.+++.+||...+++
T Consensus       908 t~~ll~~gsd-----------------------------------iNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv  952 (2131)
T KOG4369|consen  908 TLSLLQPGSD-----------------------------------INAQIETNRNTALTLALFQGRPEVVFLLLAAQANV  952 (2131)
T ss_pred             HHHHhcccch-----------------------------------hccccccccccceeeccccCcchHHHHHHHHhhhh
Confidence            7777765544                                   332 2446679999999999999999999999999


Q ss_pred             ccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcH
Q psy8454         834 NIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY--RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTC  911 (936)
Q Consensus       834 ~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~--~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~  911 (936)
                      ..+. +.|.|||+-++..|.+++-++|+..| +|+|+.-.  ..-|+|-+++..||...|..|+...|.++.+|++|.|+
T Consensus       953 ehRa-ktgltplme~AsgGyvdvg~~li~~g-ad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~ 1030 (2131)
T KOG4369|consen  953 EHRA-KTGLTPLMEMASGGYVDVGNLLIAAG-ADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTV 1030 (2131)
T ss_pred             hhhc-ccCCcccchhhcCCccccchhhhhcc-cccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcc
Confidence            9999 99999999999999999999999999 99987532  44589999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         912 LHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       912 L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      |-+|+.-|++..+.+|++.++..
T Consensus      1031 Lwla~~Gg~lss~~il~~~~ad~ 1053 (2131)
T KOG4369|consen 1031 LWLASAGGALSSCPILVSSVADA 1053 (2131)
T ss_pred             cchhccCCccccchHHhhcccCh
Confidence            99999999999999999987764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=3.7e-23  Score=252.22  Aligned_cols=260  Identities=22%  Similarity=0.142  Sum_probs=195.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCcHHH-HHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLVLEL--GADTNSQDLCGCSPLH-YAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT  596 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~-~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~  596 (936)
                      ..+...++.|++.|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|++.|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            3568999999999999999999998  9999999999999999 8999999999999999998    6778999999999


Q ss_pred             HcC---cHHHHHHHHhcccccc----cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhc
Q psy8454         597 NNG---HETCVKALIYFNEQEV----LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANN  669 (936)
Q Consensus       597 ~~g---~~eiv~~Ll~~~~~~~----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~  669 (936)
                      .++   ...++.++...+....    ........+..|.||||.|+..|+.+++++|+++|++++..+.... ..     
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~-~~-----  164 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDF-FV-----  164 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCch-hh-----
Confidence            732   2334444443321100    0001122345799999999999999999999999999884322100 00     


Q ss_pred             hhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHc
Q psy8454         670 LHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIEN  749 (936)
Q Consensus       670 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~  749 (936)
                                .                                                                     
T Consensus       165 ----------~---------------------------------------------------------------------  165 (743)
T TIGR00870       165 ----------K---------------------------------------------------------------------  165 (743)
T ss_pred             ----------c---------------------------------------------------------------------
Confidence                      0                                                                     


Q ss_pred             CcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy8454         750 NEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY  829 (936)
Q Consensus       750 g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~  829 (936)
                                                                   ..   -......|.||||.|+..|+.+++++|+++
T Consensus       166 ---------------------------------------------~~---~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       166 ---------------------------------------------SQ---GVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ---------------------------------------------CC---CCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence                                                         00   001134688999999999999999999999


Q ss_pred             CCCcccccccCCCcHHHHHHhCC---------CHHHHHHHHhcCC--CCC----CCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454         830 RADINIVTRVKQLTPLHIACQNN---------NLSIVRLLLAAKQ--CNV----NAQDYRGNTALHYAAINNHTNLATLL  894 (936)
Q Consensus       830 g~~v~~~~~~~g~TpLh~A~~~g---------~~~iv~~LL~~g~--~dv----n~~d~~g~TpL~~A~~~g~~~iv~~L  894 (936)
                      |++++..+ ..|+||||+|+..+         ...+.+++++.+.  .+.    +..|..|.||||+|+..|+.+++++|
T Consensus       198 gadin~~d-~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       198 PADILTAD-SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             CcchhhHh-hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            99999998 89999999999987         2345566666541  233    66789999999999999999999999


Q ss_pred             HHcCCCCcCcccCCCcHHHHHHH
Q psy8454         895 LKSGARPQIKNHYGQTCLHMAQQ  917 (936)
Q Consensus       895 L~~Ga~~~~~d~~g~T~L~~A~~  917 (936)
                      ++.+++...-...+..|.+.+..
T Consensus       277 L~~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       277 LAIKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHhcceeeccCcchHhHhhh
Confidence            98654433333344455554444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.90  E-value=3.8e-24  Score=200.48  Aligned_cols=267  Identities=27%  Similarity=0.291  Sum_probs=225.0

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      +.....++.++..|-.+--..++..-...                                   ++..|.+.+-.|.+.|
T Consensus        29 s~q~a~~~~~~~m~~t~p~~~l~~~~s~~-----------------------------------~~~lge~~~~~~~~s~   73 (296)
T KOG0502|consen   29 STQIAELFEQVEMGTTEPRCALTAEISAL-----------------------------------RNALGESLLTVAVRSG   73 (296)
T ss_pred             hHHHHHHHHHhhccccchhHHHHHHHHHH-----------------------------------HHhcCCcccchhhhcC
Confidence            45556888898888888777777664332                                   3455778888889999


Q ss_pred             CHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454         534 RIKVVDLVLELGAD-TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE  612 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~  612 (936)
                      +.+++..++....+ ++..+..|+++++.|+-.|+...+..++.+|+..|..+..+.+|+++++...+.+++..+.++  
T Consensus        74 nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--  151 (296)
T KOG0502|consen   74 NSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--  151 (296)
T ss_pred             CcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--
Confidence            98887776654333 334566799999999999999999999999999999999999999999999999999888874  


Q ss_pred             ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCC
Q psy8454         613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVP  692 (936)
Q Consensus       613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~  692 (936)
                            .+|..|..|.|||.+|++.|+.++|++|++.|++++..                                    
T Consensus       152 ------~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l------------------------------------  189 (296)
T KOG0502|consen  152 ------KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL------------------------------------  189 (296)
T ss_pred             ------cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh------------------------------------
Confidence                  57999999999999999999999999999999997643                                    


Q ss_pred             CCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCC
Q psy8454         693 KEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNAC  772 (936)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~  772 (936)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (296)
T KOG0502|consen  190 --------------------------------------------------------------------------------  189 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCC
Q psy8454         773 HPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN  852 (936)
Q Consensus       773 ~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g  852 (936)
                                                     .+...++|.+|++.|..++|++||+++.++|..+ .+|-|||.+|++.|
T Consensus       190 -------------------------------gk~resALsLAt~ggytdiV~lLL~r~vdVNvyD-wNGgTpLlyAvrgn  237 (296)
T KOG0502|consen  190 -------------------------------GKYRESALSLATRGGYTDIVELLLTREVDVNVYD-WNGGTPLLYAVRGN  237 (296)
T ss_pred             -------------------------------hhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec-cCCCceeeeeecCC
Confidence                                           1223478899999999999999999999999998 88889999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHH
Q psy8454         853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH  913 (936)
Q Consensus       853 ~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~  913 (936)
                      |.+|++.|++.| +|++..+..|++++.+|+..|+. +|+..+++-+..+..|..-+||+|
T Consensus       238 hvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  238 HVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             hHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999 99999999999999999999988 888888877776777766667654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=4.8e-23  Score=251.19  Aligned_cols=232  Identities=26%  Similarity=0.277  Sum_probs=183.2

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhC--CCCCCcCCCCCCcHHH-HHHHcCcHHHHHHHHhcccccccccCcccccCCCChH
Q psy8454         554 CGCSPLHYAATRGHQNVLLLLLHS--GASINLTDNEGNTALH-LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSP  630 (936)
Q Consensus       554 ~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~d~~g~t~L~-~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~  630 (936)
                      .++.+++.|+..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|++++.          .+..|.||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----------~~~~G~T~   85 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----------RGAVGDTL   85 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----------CCCcChHH
Confidence            467889999999999999999988  8899999999999999 8889999999999998652          57789999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccc
Q psy8454         631 LHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYL  710 (936)
Q Consensus       631 L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (936)
                      ||.|+. +..+.++.++....+....+    .+..                                             
T Consensus        86 Lh~A~~-~~~~~v~~ll~~l~~~~~~~----~~~~---------------------------------------------  115 (743)
T TIGR00870        86 LHAISL-EYVDAVEAILLHLLAAFRKS----GPLE---------------------------------------------  115 (743)
T ss_pred             HHHHHh-ccHHHHHHHHHHHhhccccc----Cchh---------------------------------------------
Confidence            998886 33444444443321111000    0000                                             


Q ss_pred             cccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccC
Q psy8454         711 DYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESES  790 (936)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  790 (936)
                                                                     +..                              
T Consensus       116 -----------------------------------------------~~~------------------------------  118 (743)
T TIGR00870       116 -----------------------------------------------LAN------------------------------  118 (743)
T ss_pred             -----------------------------------------------hhc------------------------------
Confidence                                                           000                              


Q ss_pred             ccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc-------------cCCCcHHHHHHhCCCHHHH
Q psy8454         791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR-------------VKQLTPLHIACQNNNLSIV  857 (936)
Q Consensus       791 ~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~-------------~~g~TpLh~A~~~g~~~iv  857 (936)
                             .........|.||||+||.+|+.+++++|+++|++++....             ..|.||||.|+..|+.+++
T Consensus       119 -------~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv  191 (743)
T TIGR00870       119 -------DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIV  191 (743)
T ss_pred             -------cccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHH
Confidence                   00112245799999999999999999999999999996541             3589999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC-------cCcccCCCcHHHHHHHcCCH
Q psy8454         858 RLLLAAKQCNVNAQDYRGNTALHYAAINN---------HTNLATLLLKSGARP-------QIKNHYGQTCLHMAQQMTSL  921 (936)
Q Consensus       858 ~~LL~~g~~dvn~~d~~g~TpL~~A~~~g---------~~~iv~~LL~~Ga~~-------~~~d~~g~T~L~~A~~~g~~  921 (936)
                      ++|+++| +|+|.+|..|+||||+|+..+         ...+.+++++.|+..       ++.|.+|.||||+|+..|+.
T Consensus       192 ~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~  270 (743)
T TIGR00870       192 ALLSEDP-ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRI  270 (743)
T ss_pred             HHHhcCC-cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCc
Confidence            9999999 999999999999999999987         234667777766654       67799999999999999999


Q ss_pred             HHHHHHhhh
Q psy8454         922 SLVRVLTHE  930 (936)
Q Consensus       922 ~iv~~Ll~~  930 (936)
                      +++++|++.
T Consensus       271 ~l~~lLL~~  279 (743)
T TIGR00870       271 VLFRLKLAI  279 (743)
T ss_pred             cHHHHHHHH
Confidence            999999984

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=2.4e-21  Score=237.19  Aligned_cols=115  Identities=26%  Similarity=0.349  Sum_probs=76.5

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL  879 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL  879 (936)
                      +|.+|.+|.||||.|+..|+.+++++|++.++..+.   ..|.++||.|+..|+.+++++|+++| +|+|.+|..|+|||
T Consensus       584 in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~---~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpL  659 (823)
T PLN03192        584 VHIRDANGNTALWNAISAKHHKIFRILYHFASISDP---HAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATAL  659 (823)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc---ccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHH
Confidence            444556666666777777777777777666554332   33456777777777777777777776 67777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCcccCC-CcHHHHHHHc
Q psy8454         880 HYAAINNHTNLATLLLKSGARPQIKNHYG-QTCLHMAQQM  918 (936)
Q Consensus       880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g-~T~L~~A~~~  918 (936)
                      |+|+..|+.+++++|+++||+++..|..| .||.+++...
T Consensus       660 h~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        660 QVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            77777777777777777777777776666 6666666443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=3.3e-21  Score=236.08  Aligned_cols=193  Identities=21%  Similarity=0.298  Sum_probs=155.7

Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      ..++-..+.+.+..  ..+..+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|  
T Consensus       506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g--  581 (823)
T PLN03192        506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA--  581 (823)
T ss_pred             cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC--
Confidence            34444455444433  23445678899999999999999999999999999999999999999999999999999865  


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK  693 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~  693 (936)
                          +++|.+|.+|.||||.|+..|+.+++++|++.++..+                                       
T Consensus       582 ----adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~---------------------------------------  618 (823)
T PLN03192        582 ----CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD---------------------------------------  618 (823)
T ss_pred             ----CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC---------------------------------------
Confidence                5788888899999999999999999999886543211                                       


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454         694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH  773 (936)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~  773 (936)
                                                                                                      
T Consensus       619 --------------------------------------------------------------------------------  618 (823)
T PLN03192        619 --------------------------------------------------------------------------------  618 (823)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC
Q psy8454         774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN  853 (936)
Q Consensus       774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~  853 (936)
                                                    ...|.++||.|+.+|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus       619 ------------------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d-~~G~TpLh~A~~~g~  667 (823)
T PLN03192        619 ------------------------------PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED-HQGATALQVAMAEDH  667 (823)
T ss_pred             ------------------------------cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCc
Confidence                                          1234578899999999999999999999998888 888999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCC-CcHHHHHHHc
Q psy8454         854 LSIVRLLLAAKQCNVNAQDYRG-NTALHYAAIN  885 (936)
Q Consensus       854 ~~iv~~LL~~g~~dvn~~d~~g-~TpL~~A~~~  885 (936)
                      .+++++|+++| +|++..|..| .||++++...
T Consensus       668 ~~iv~~Ll~~G-Adv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        668 VDMVRLLIMNG-ADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHH
Confidence            99999999888 8999888888 8888877543

>KOG0505|consensus

Probab=99.87  E-value=9.4e-22  Score=209.41  Aligned_cols=93  Identities=32%  Similarity=0.411  Sum_probs=79.6

Q ss_pred             HHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy8454         823 VRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ  902 (936)
Q Consensus       823 v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~  902 (936)
                      -.||- .|...+... ..|-|+||.|+.+|..+++++|+++| .+++.+|..||||||.|+..|..++.++|+++|++.+
T Consensus       182 ~q~l~-~G~~~d~~~-~rG~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d  258 (527)
T KOG0505|consen  182 RQWLN-AGAELDARH-ARGATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD  258 (527)
T ss_pred             HHHHh-ccccccccc-cccchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccc
Confidence            34444 788888888 44889999999999999999999988 8999999999999999999999999998889999999


Q ss_pred             CcccCCCcHHHHHHHc
Q psy8454         903 IKNHYGQTCLHMAQQM  918 (936)
Q Consensus       903 ~~d~~g~T~L~~A~~~  918 (936)
                      .....|.||+++|...
T Consensus       259 ~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  259 AKTKMGETPLDVADEE  274 (527)
T ss_pred             hhhhcCCCCccchhhh
Confidence            9999999999988764

>KOG0514|consensus

Probab=99.85  E-value=4.4e-21  Score=193.37  Aligned_cols=167  Identities=29%  Similarity=0.449  Sum_probs=130.5

Q ss_pred             CcccccCCCChHHHHHHHhCCHHHHHHHHHCC-CCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCC
Q psy8454         619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHG-ANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVS  697 (936)
Q Consensus       619 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  697 (936)
                      .+|..|.+|.|+||||+.++++++|+.||+.| ++++.+|+.|.||++.++-                            
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaAL----------------------------  311 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAAL----------------------------  311 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHH----------------------------
Confidence            35778888999999999999999999998887 6788888888888876631                            


Q ss_pred             CCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccch
Q psy8454         698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQ  777 (936)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~  777 (936)
                                                                    -..-...+..+|..|+..+               
T Consensus       312 ----------------------------------------------A~lk~~~d~~vV~~LF~mg---------------  330 (452)
T KOG0514|consen  312 ----------------------------------------------AKLKQPADRTVVERLFKMG---------------  330 (452)
T ss_pred             ----------------------------------------------HhhcchhhHHHHHHHHhcc---------------
Confidence                                                          1111223445555555433               


Q ss_pred             hcccchhhhhccCccccccCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHH
Q psy8454         778 CAKCKEDVVESESRPVTDECLNINICN-SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI  856 (936)
Q Consensus       778 ~~~~~~~~~~~~~~~l~~~~~d~n~~d-~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~i  856 (936)
                                           ++|.+- +.|+|+|++|+.+|+.++|+.||.+|+|||..+ .+|.|+||.||.+||.+|
T Consensus       331 ---------------------nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQD-dDGSTALMCA~EHGhkEi  388 (452)
T KOG0514|consen  331 ---------------------DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQD-DDGSTALMCAAEHGHKEI  388 (452)
T ss_pred             ---------------------CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcccc-CCccHHHhhhhhhChHHH
Confidence                                 245443 468888888888888888888888888888888 788888888888888888


Q ss_pred             HHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454         857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK  896 (936)
Q Consensus       857 v~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~  896 (936)
                      |++||....+|+...|.+|.|+|++|...|+-||.-+|..
T Consensus       389 vklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  389 VKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             HHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            8888888888888888888888888888888888887775

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=184.67  Aligned_cols=139  Identities=18%  Similarity=0.203  Sum_probs=128.0

Q ss_pred             ccCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHH---HHHHHhcCCCC
Q psy8454         795 DECLNINICNSDGYTALHIATSLGHY----DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI---VRLLLAAKQCN  867 (936)
Q Consensus       795 ~~~~d~n~~d~~g~t~L~~Aa~~g~~----~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~i---v~~LL~~g~~d  867 (936)
                      .++++++..+.++.+++|.||+.|+.    +++++|++.|+.++..+ ..|+||||+|+..|+.++   +++|++.| ++
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d-~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-ad   85 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYD-HHGRQCTHMVAWYDRANAVMKIELLVNMG-AD   85 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccC-CCCCcHHHHHHHhCccCHHHHHHHHHHcC-CC
Confidence            46788899999999999999999998    66678889999999888 899999999999998654   89999999 99


Q ss_pred             CCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         868 VNAQD-YRGNTALHYAAINNHTNLATLLLK-SGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       868 vn~~d-~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      +|.+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+.+|+.+.
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99998 589999999999999999999995 899999999999999999999999999999999988764

>KOG0505|consensus

Probab=99.84  E-value=1.3e-20  Score=200.78  Aligned_cols=232  Identities=26%  Similarity=0.362  Sum_probs=167.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHH
Q psy8454         524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC  603 (936)
Q Consensus       524 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ei  603 (936)
                      -.+.-|+..|..+-++.|+..|++++..+.+|.|+||-+|...+.++|++|+++|++++..|..|+||||.|+..||..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            34556667788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCcccCCCChhhhhhchhHHHHHHHhhcC
Q psy8454         604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNANNLHVAKLLNAYVHK  682 (936)
Q Consensus       604 v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~  682 (936)
                      +++|+.+|      +++-..|..|..|+..+.--...+++..-... |++           +..+-.....         
T Consensus       122 ~~~li~~g------A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-----------iea~R~~~e~---------  175 (527)
T KOG0505|consen  122 VEYLIQHG------ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-----------IEAARKAEEQ---------  175 (527)
T ss_pred             HHHHHHhh------hhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-----------HHHHhhhhHH---------
Confidence            88888765      34555666666666655433333332222211 111           0000000000         


Q ss_pred             CCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCC
Q psy8454         683 PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLS  762 (936)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~  762 (936)
                                                                                +.         ++-++..+   
T Consensus       176 ----------------------------------------------------------~m---------l~D~~q~l---  185 (527)
T KOG0505|consen  176 ----------------------------------------------------------TM---------LDDARQWL---  185 (527)
T ss_pred             ----------------------------------------------------------HH---------HHHHHHHH---
Confidence                                                                      00         01111111   


Q ss_pred             cCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCC
Q psy8454         763 NEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL  842 (936)
Q Consensus       763 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~  842 (936)
                                                      ..|...+..+..|-|+||+|+.+|..+++++|+++|.+++..+ ..|+
T Consensus       186 --------------------------------~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D-~dgW  232 (527)
T KOG0505|consen  186 --------------------------------NAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD-YDGW  232 (527)
T ss_pred             --------------------------------hccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc-ccCC
Confidence                                            1334455666679999999999999999999999999999999 9999


Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454         843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN  885 (936)
Q Consensus       843 TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~  885 (936)
                      ||||.|+..|+.++.++|+++| ++.+.....|.||+.+|...
T Consensus       233 tPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  233 TPLHAAAHWGQEDACELLVEHG-ADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             CcccHHHHhhhHhHHHHHHHhh-cccchhhhcCCCCccchhhh
Confidence            9999999999999999999999 99999999999999998763

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=3.7e-20  Score=182.13  Aligned_cols=131  Identities=24%  Similarity=0.339  Sum_probs=121.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHh------CCCCcccccccCCCcHHHHHHhCCC----HHHHHHHHhcCCCCCC
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLIN------YRADINIVTRVKQLTPLHIACQNNN----LSIVRLLLAAKQCNVN  869 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~------~g~~v~~~~~~~g~TpLh~A~~~g~----~~iv~~LL~~g~~dvn  869 (936)
                      ++..+..|.||||+|++.|+.++++.|+.      .|++++.++ ..|.||||+|+..|+    .+++++|++.| +++|
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d-~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-adin   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATD-DAGQMCIHIAAEKHEAQLAAEIIDHLIELG-ADIN   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccC-CCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CCCC
Confidence            56778999999999999999999999854      368899888 889999999999999    58999999998 9999


Q ss_pred             CCCC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         870 AQDY-RGNTALHYAAINNHTNLATLLLK-SGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       870 ~~d~-~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      .++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+|||++|+..++.+++++|++.++
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            9985 99999999999999999999997 599999999999999999999999999999987654

>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins

Probab=99.82  E-value=2.6e-20  Score=167.05  Aligned_cols=102  Identities=24%  Similarity=0.456  Sum_probs=85.5

Q ss_pred             hHHHHHHHhcccccCCcchhHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCC
Q psy8454         299 VPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQ  378 (936)
Q Consensus       299 ~~~a~~~l~~i~~~~~p~~Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~  378 (936)
                      |++|+++|++|+..+||.+|+.||.++++.|.+... .......++||||+|+|+|||+||+++++.+++.||++|+.+.
T Consensus         1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~-~~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~~~   79 (104)
T PF02204_consen    1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIK-TSKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFIDSS   79 (104)
T ss_dssp             -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHH-HHCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHh-cccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcccc
Confidence            689999999999999999999999999999998662 1345678999999999999999999999999999999998665


Q ss_pred             CCCcccCcchhhHHHHHHHHHHHHcC
Q psy8454         379 SSNVCIDQDSFLITSLEASIEHIKSG  404 (936)
Q Consensus       379 ~~~~~~~~~~y~lt~~~aa~~~i~~~  404 (936)
                      ..   .||.+|++|||++|++||.+-
T Consensus        80 ~~---~~e~~y~ltt~~aA~~~i~~~  102 (104)
T PF02204_consen   80 LL---SGEEGYYLTTFEAAVEYIQNL  102 (104)
T ss_dssp             TT---SCHHHHHHHHHHHHHHHHHC-
T ss_pred             cc---CCHHHHHHHHHHHHHHHHHHc
Confidence            55   699999999999999999864

; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.

>KOG0512|consensus

Probab=99.81  E-value=1.5e-19  Score=163.54  Aligned_cols=146  Identities=31%  Similarity=0.399  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc
Q psy8454         738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL  817 (936)
Q Consensus       738 ~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~  817 (936)
                      .....+..|+..+.+..|+.|++..++.                                  +|.+|.+|+||||.|+.+
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~----------------------------------vNtrD~D~YTpLHRAaYn  107 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANH----------------------------------VNTRDEDEYTPLHRAAYN  107 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhcccc----------------------------------ccccccccccHHHHHHhc
Confidence            4456788899999999999999755443                                  799999999999999999


Q ss_pred             CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH-HHHHHH-
Q psy8454         818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN-LATLLL-  895 (936)
Q Consensus       818 g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~-iv~~LL-  895 (936)
                      |+.++++.|+..|+++++++ ..|+||||-||+.++.+++-+||++| +|+|+......||||+||...+.. .+.+|+ 
T Consensus       108 ~h~div~~ll~~gAn~~a~T-~~GWTPLhSAckWnN~~va~~LLqhg-aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  108 GHLDIVHELLLSGANKEAKT-NEGWTPLHSACKWNNFEVAGRLLQHG-ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             CchHHHHHHHHccCCccccc-ccCccchhhhhcccchhHHHHHHhcc-CcccccccccchhhHHhhcccchHHHHHHHhh
Confidence            99999999999999999999 99999999999999999999999999 999999999999999999876654 677776 


Q ss_pred             HcCCCCcCcccCCCcHHHHHHHcC
Q psy8454         896 KSGARPQIKNHYGQTCLHMAQQMT  919 (936)
Q Consensus       896 ~~Ga~~~~~d~~g~T~L~~A~~~g  919 (936)
                      ..+.++..++..+.||+++|.+-+
T Consensus       186 dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  186 DRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             ccccChhhhcCccchHHHHHHHhh
Confidence            568899999999999999998874

>KOG0514|consensus

Probab=99.80  E-value=2e-19  Score=181.50  Aligned_cols=170  Identities=26%  Similarity=0.357  Sum_probs=150.8

Q ss_pred             hHHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCC
Q psy8454         442 LKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDR  521 (936)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (936)
                      +.++.|..+..+.+|+|+||+|+.++|+++|+.||+.+.-.                                +|..+..
T Consensus       254 ~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~--------------------------------VD~qNrA  301 (452)
T KOG0514|consen  254 PPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCD--------------------------------VDQQNRA  301 (452)
T ss_pred             hHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCccc--------------------------------ccccccc
Confidence            45677778888999999999999999999999999988643                                4458889


Q ss_pred             CCcHHHHHHHc-----CCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy8454         522 GFTVLHVAALY-----GRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA  595 (936)
Q Consensus       522 g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A  595 (936)
                      |.||+++|+..     .+.++|+-|...| ++|.+ ...|+|+||+|+..|+.++|+.||..|+|+|.+|.+|-|+||+|
T Consensus       302 GYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA  380 (452)
T KOG0514|consen  302 GYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCA  380 (452)
T ss_pred             cccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhh
Confidence            99999999954     4678888888764 67765 45799999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       596 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                      |.+||.|+|++||..     ..+++...|.+|.|+|.+|...||-+|.-+|..+
T Consensus       381 ~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  381 AEHGHKEIVKLLLAV-----PSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhhChHHHHHHHhcc-----CcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999974     5688999999999999999999999999888754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=8.6e-19  Score=184.20  Aligned_cols=129  Identities=19%  Similarity=0.156  Sum_probs=114.5

Q ss_pred             cccCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCccccc---ccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCC
Q psy8454         800 INICNSDGYT-ALHIATSLGHYDLVRLLINYRADINIVT---RVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQ-DYR  874 (936)
Q Consensus       800 ~n~~d~~g~t-~L~~Aa~~g~~~~v~~LL~~g~~v~~~~---~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~-d~~  874 (936)
                      +..+|..|.| +||.|++.|+.+++++|+++|++++..+   +..|.||||+|+..|+.+++++|+++| +|+|.+ +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCCC
Confidence            4556777775 5677788899999999999999999874   368999999999999999999999999 999996 468


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhh
Q psy8454         875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTH  929 (936)
Q Consensus       875 g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~  929 (936)
                      |.||||+|+..|+.+++++|+++||+++.+|..|.||||+|++.++.+++..+..
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC
Confidence            9999999999999999999999999999999999999999999887776655543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=3.5e-19  Score=172.76  Aligned_cols=131  Identities=22%  Similarity=0.231  Sum_probs=112.7

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--C-----cccccccCCCcHHHHHHhCCCHH---HHHHHHhcCCCCCC
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRA--D-----INIVTRVKQLTPLHIACQNNNLS---IVRLLLAAKQCNVN  869 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~--~-----v~~~~~~~g~TpLh~A~~~g~~~---iv~~LL~~g~~dvn  869 (936)
                      .+..|..|.||||+||+.|+.  +.++...+.  +     ++..+ ..|.||||+|+..|+.+   ++++|++.| +++|
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adin   85 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYN-RHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADIN   85 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhc-CCCCEEEEeecccCchhHHHHHHHHHHcC-CCcc
Confidence            567789999999999999984  333332222  2     22345 78999999999999874   689999999 9999


Q ss_pred             CCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         870 AQD-YRGNTALHYAAINNHTNLATLLLK-SGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       870 ~~d-~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      .+| ..|+||||+|++.|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+.+|+..
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            998 499999999999999999999997 59999999999999999999999999999999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.4e-18  Score=169.91  Aligned_cols=143  Identities=23%  Similarity=0.256  Sum_probs=127.3

Q ss_pred             cccCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHH---HHHHHhCCCCCCcCC-C
Q psy8454         515 TQSMDDRGFTVLHVAALYGRI----KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNV---LLLLLHSGASINLTD-N  586 (936)
Q Consensus       515 ~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i---v~~Ll~~g~~~~~~d-~  586 (936)
                      ++..+..+.++||.|++.|+.    +++++|++.|+.++.+|..|+||||+|+..|+.++   +++|++.|++++.++ .
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~   92 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG   92 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC
Confidence            344667788999999999998    66778889999999999999999999999988654   899999999999998 5


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCC
Q psy8454         587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVT  662 (936)
Q Consensus       587 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t  662 (936)
                      .|.||||+|+..|+.+++++|++.     .+++++.++..|.||||+|+..|+.+++++|+++|++.+.++..|..
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQ-----LGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhc-----cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            899999999999999999999952     23678899999999999999999999999999999999988877643

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=2.5e-18  Score=169.15  Aligned_cols=133  Identities=25%  Similarity=0.312  Sum_probs=120.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCcHHHHHHHhCc----HHHHHHHHhCCCCCCcCC
Q psy8454         516 QSMDDRGFTVLHVAALYGRIKVVDLVLE------LGADTNSQDLCGCSPLHYAATRGH----QNVLLLLLHSGASINLTD  585 (936)
Q Consensus       516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~d  585 (936)
                      +.++..|.|+||+|++.|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4477889999999999999999999864      368899999999999999999998    589999999999999998


Q ss_pred             C-CCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCC
Q psy8454         586 N-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP  653 (936)
Q Consensus       586 ~-~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  653 (936)
                      . .|.||||+|+..++.+++++|+..     .+++++..|..|.|||+.|+..|+.+++++|+++++..
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~-----~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQ-----PGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5 899999999999999999999973     23678899999999999999999999999999987653

>KOG0195|consensus

Probab=99.77  E-value=6.7e-19  Score=171.73  Aligned_cols=128  Identities=34%  Similarity=0.469  Sum_probs=119.4

Q ss_pred             ccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCC
Q psy8454         791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNA  870 (936)
Q Consensus       791 ~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~  870 (936)
                      .++.+..-|.|.-|..|.+|||+||+.|+..+++.|+..|+.+|..+ ....||||+|+.+||.+||+.|++.. +|+|+
T Consensus        18 lwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tn-mgddtplhlaaahghrdivqkll~~k-advna   95 (448)
T KOG0195|consen   18 LWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTN-MGDDTPLHLAAAHGHRDIVQKLLSRK-ADVNA   95 (448)
T ss_pred             EEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccccccc-CCCCcchhhhhhcccHHHHHHHHHHh-cccch
Confidence            35666677889999999999999999999999999999999999998 77789999999999999999999998 99999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC
Q psy8454         871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS  920 (936)
Q Consensus       871 ~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~  920 (936)
                      .+..|+|||||||-.|...+.+-|+..||-+++.|+.|.|||+.|.-.-.
T Consensus        96 vnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~  145 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLK  145 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHH
Confidence            99999999999999999999999999999999999999999999854433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=5.7e-18  Score=178.02  Aligned_cols=154  Identities=19%  Similarity=0.246  Sum_probs=132.6

Q ss_pred             hhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccC----CCCCCcH
Q psy8454         735 TEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINIC----NSDGYTA  810 (936)
Q Consensus       735 ~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~----d~~g~t~  810 (936)
                      ...+..++++.|+..|+.+++++|++.|                                   +++|..    +..|.||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~G-----------------------------------AdiN~~~~~sd~~g~Tp   73 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLG-----------------------------------ADPEAPFPLSENSKTNP   73 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCC-----------------------------------CCccccCcccCCCCCCH
Confidence            3445567899999999999999998754                                   556665    4589999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy8454         811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL  890 (936)
Q Consensus       811 L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~i  890 (936)
                      ||+|+..|+.+++++|+++|++++..++..|.||||+|+..|+.+++++|+..| ++++.+|..|.||||+|++.++.++
T Consensus        74 Lh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884         74 LIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChhH
Confidence            999999999999999999999999876468999999999999999999999999 9999999999999999999999998


Q ss_pred             HHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       891 v~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      +..+.  |+.   .+..+.+|.+++   ++.+++++|+.++.
T Consensus       153 ~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        153 AFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            86665  332   356678888876   47899999988764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.9e-18  Score=166.31  Aligned_cols=103  Identities=26%  Similarity=0.343  Sum_probs=93.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCH---HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCc
Q psy8454         801 NICNSDGYTALHIATSLGHY---DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT  877 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~---~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~T  877 (936)
                      +.+|..|.||||+|+..|+.   +++++|+++|++++..+...|.||||+|+..|+.+++++|+.+++++++.+|..|.|
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            44588899999999999986   468999999999999874589999999999999999999998644999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcC
Q psy8454         878 ALHYAAINNHTNLATLLLKSGARPQI  903 (936)
Q Consensus       878 pL~~A~~~g~~~iv~~LL~~Ga~~~~  903 (936)
                      |||+|+..|+.+++++|+++||+.++
T Consensus       129 pL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        129 PYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999998763

>KOG0512|consensus

Probab=99.75  E-value=2.3e-17  Score=149.46  Aligned_cols=148  Identities=26%  Similarity=0.304  Sum_probs=129.1

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..++..+..|+..|.+..|+.||+..++.                                ++.+|.+|.||||-|+.+|
T Consensus        61 ~dp~rl~lwaae~nrl~eV~~lL~e~an~--------------------------------vNtrD~D~YTpLHRAaYn~  108 (228)
T KOG0512|consen   61 KDPIRLLLWAAEKNRLTEVQRLLSEKANH--------------------------------VNTRDEDEYTPLHRAAYNG  108 (228)
T ss_pred             cCHHHHHHHHHhhccHHHHHHHHHhcccc--------------------------------ccccccccccHHHHHHhcC
Confidence            35566677899999999999999998763                                5559999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc-HHHHHHHHhccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH-ETCVKALIYFNE  612 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-~eiv~~Ll~~~~  612 (936)
                      +.+||+.|+..|++++++...|+||||-||...+.+++..||++|++++.......||||.||.+.+ ...+.+|+..  
T Consensus       109 h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~d--  186 (228)
T KOG0512|consen  109 HLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHD--  186 (228)
T ss_pred             chHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhc--
Confidence            9999999999999999999999999999999999999999999999999999889999999998665 5667777753  


Q ss_pred             ccccccCcccccCCCChHHHHHHHhC
Q psy8454         613 QEVLNLNINAVNNQGDSPLHAAARWG  638 (936)
Q Consensus       613 ~~~~~~~~~~~~~~g~t~L~~A~~~g  638 (936)
                         ..+.....+..+.||+.+|-+.+
T Consensus       187 ---ryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  187 ---RYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             ---cccChhhhcCccchHHHHHHHhh
Confidence               34556678888999999998765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=6e-17  Score=141.06  Aligned_cols=89  Identities=47%  Similarity=0.721  Sum_probs=78.4

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy8454         811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL  890 (936)
Q Consensus       811 L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~i  890 (936)
                      ||+||+.|+.+++++|++.+.+++.     |.||||+||..|+.+++++|++.| ++++.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            7899999999999999999988764     778999999999999999999988 8999999999999999999999999


Q ss_pred             HHHHHHcCCCCcCcc
Q psy8454         891 ATLLLKSGARPQIKN  905 (936)
Q Consensus       891 v~~LL~~Ga~~~~~d  905 (936)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=9.8e-16  Score=142.88  Aligned_cols=124  Identities=43%  Similarity=0.634  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454         803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA  882 (936)
Q Consensus       803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A  882 (936)
                      .+.+|.||||.|+..|+.+++++|++.|.+.+..+ ..|.||||.|+..++.+++++|++.+ ++++..+..|.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHH
Confidence            46789999999999999999999999999987777 89999999999999999999999998 78999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHh
Q psy8454         883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT  928 (936)
Q Consensus       883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll  928 (936)
                      ++.++.+++++|+++|.+++..+..|.||+++|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.67  E-value=6.3e-16  Score=173.35  Aligned_cols=126  Identities=35%  Similarity=0.415  Sum_probs=118.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc----------------------cCCCcHHHHHHhCCCHHHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTR----------------------VKQLTPLHIACQNNNLSIVRLLL  861 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~----------------------~~g~TpLh~A~~~g~~~iv~~LL  861 (936)
                      .-.|+||||+|+.+.+.++|++|++.||||+++..                      ..|..||-+||--++.+|+++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            45799999999999999999999999999998751                      13568999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         862 AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR--PQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       862 ~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~--~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      ++| +|+|++|.+|+|.||..+..-..++.++++++|++  ..++|++|.|||.+|++.|+.+|.+.+++.
T Consensus       261 ~~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  261 AHG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            998 99999999999999999999999999999999999  999999999999999999999999999887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.64  E-value=1.3e-15  Score=132.61  Aligned_cols=86  Identities=42%  Similarity=0.617  Sum_probs=80.2

Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHH
Q psy8454         845 LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLV  924 (936)
Q Consensus       845 Lh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv  924 (936)
                      ||+||+.|+.+++++|++.+ .+++.    |+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            79999999999999999987 77777    89999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcC
Q psy8454         925 RVLTHEAPFVL  935 (936)
Q Consensus       925 ~~Ll~~~~~~~  935 (936)
                      ++|+++|+.+.
T Consensus        76 ~~Ll~~g~~~~   86 (89)
T PF12796_consen   76 KLLLEHGADVN   86 (89)
T ss_dssp             HHHHHTTT-TT
T ss_pred             HHHHHcCCCCC
Confidence            99999988763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.62  E-value=6.7e-16  Score=150.97  Aligned_cols=118  Identities=42%  Similarity=0.660  Sum_probs=76.2

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccc
Q psy8454         544 LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAV  623 (936)
Q Consensus       544 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~  623 (936)
                      ..-|.|.-|..|.+|||+||+.|+..+++.|+..|+.+|..+.-..||||+|+..||-++|+.|+++.      +++|+.
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~k------advnav   96 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK------ADVNAV   96 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHh------cccchh
Confidence            34455556666666666666666666666666666666666665666666666666666666666533      456666


Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454         624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA  667 (936)
Q Consensus       624 ~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  667 (936)
                      |..|.||||+||-+|+..+++-|+..|+.++..++.|.||+..|
T Consensus        97 nehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            66666666666666666666666666666666666666666655

>KOG3676|consensus

Probab=99.58  E-value=2.6e-14  Score=160.54  Aligned_cols=236  Identities=21%  Similarity=0.155  Sum_probs=170.1

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhCC---------CCCCcCCCCCCcHHHHHHH---cCcHHHHHHHHhcccccccccCcccc
Q psy8454         556 CSPLHYAATRGHQNVLLLLLHSG---------ASINLTDNEGNTALHLATN---NGHETCVKALIYFNEQEVLNLNINAV  623 (936)
Q Consensus       556 ~t~L~~A~~~g~~~iv~~Ll~~g---------~~~~~~d~~g~t~L~~A~~---~g~~eiv~~Ll~~~~~~~~~~~~~~~  623 (936)
                      +.++..|...+..+....|+..+         -+++.+..-|+|.||.|.-   .++-++++.|++.-+.-... .....
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind-~~~~e  180 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND-IYTSE  180 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh-hhhhH
Confidence            35666666666666666655444         4456667788999998875   45668899998754321111 11223


Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCC
Q psy8454         624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPP  703 (936)
Q Consensus       624 ~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (936)
                      ...|.||||.|+.+.+.++|++|++.|||++.+....   +..+                      ..            
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~---FF~~----------------------~d------------  223 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGA---FFCP----------------------DD------------  223 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc---ccCc----------------------cc------------
Confidence            4679999999999999999999999999987542100   0000                      00            


Q ss_pred             CCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccch
Q psy8454         704 PTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKE  783 (936)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~  783 (936)
                                              .....                                                   
T Consensus       224 ------------------------qk~~r---------------------------------------------------  228 (782)
T KOG3676|consen  224 ------------------------QKASR---------------------------------------------------  228 (782)
T ss_pred             ------------------------ccccc---------------------------------------------------
Confidence                                    00000                                                   


Q ss_pred             hhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhc
Q psy8454         784 DVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA  863 (936)
Q Consensus       784 ~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~  863 (936)
                                  ..-+..-----|..||-.||..++.+++++|+++|+|++++| ..|+|.||..+..-..++..+++++
T Consensus       229 ------------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqD-S~GNTVLH~lVi~~~~~My~~~L~~  295 (782)
T KOG3676|consen  229 ------------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQD-SNGNTVLHMLVIHFVTEMYDLALEL  295 (782)
T ss_pred             ------------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccc-cCCChHHHHHHHHHHHHHHHHHHhc
Confidence                        000001112358899999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-C-------------CCCcCccc--CCCcHHHHHHHc
Q psy8454         864 KQCN--VNAQDYRGNTALHYAAINNHTNLATLLLKS-G-------------ARPQIKNH--YGQTCLHMAQQM  918 (936)
Q Consensus       864 g~~d--vn~~d~~g~TpL~~A~~~g~~~iv~~LL~~-G-------------a~~~~~d~--~g~T~L~~A~~~  918 (936)
                      | ++  ...+|..|.|||.+|++-|+.++.+.+++. +             -+.+..|.  +-.++|...+..
T Consensus       296 g-a~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  296 G-ANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             C-CCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            9 77  889999999999999999999999999986 1             12333333  345777777665

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.57  E-value=4.6e-14  Score=131.50  Aligned_cols=124  Identities=46%  Similarity=0.705  Sum_probs=115.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN  597 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  597 (936)
                      ++..|.||||.|+..|+.+++++|+++|.+.+..+..|.||+|+|+..++.+++++|++.|++++..+..|.||+|.|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45779999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHH
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL  647 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  647 (936)
                      .++.+++++|+..+      .+.+..+..|.||++.|+..++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHG------ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcC------CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999865      456778899999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.54  E-value=2.2e-14  Score=116.09  Aligned_cols=105  Identities=27%  Similarity=0.374  Sum_probs=96.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy8454         810 ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN  889 (936)
Q Consensus       810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~  889 (936)
                      -+.+++++|..+-|+-....|.++|..  ..|++|||+|+-.|+++++++|+..| ++++.+|+.|-|||.-|+..||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhHH
Confidence            467899999999999999999888755  48999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCcccCCCcHHHHHHH
Q psy8454         890 LATLLLKSGARPQIKNHYGQTCLHMAQQ  917 (936)
Q Consensus       890 iv~~LL~~Ga~~~~~d~~g~T~L~~A~~  917 (936)
                      ||++||++||+-..+.-.|.+.++.+-+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhccH
Confidence            9999999999988888888888876643

>KOG4214|consensus

Probab=99.47  E-value=1.7e-13  Score=110.95  Aligned_cols=103  Identities=26%  Similarity=0.436  Sum_probs=91.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy8454         459 KLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVV  538 (936)
Q Consensus       459 ~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  538 (936)
                      .+.+++++|.++.|+.....+.+.++                                  ...|++|||+|+-+|+.+++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~----------------------------------~~ggR~plhyAAD~GQl~il   50 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNE----------------------------------IYGGRTPLHYAADYGQLSIL   50 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHH----------------------------------HhCCcccchHhhhcchHHHH
Confidence            46788999999999999998865443                                  23689999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy8454         539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA  595 (936)
Q Consensus       539 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A  595 (936)
                      ++|+..|++++.+|..|-|||..|+..||.++|++||+.|++-..+..+|.+.+..+
T Consensus        51 efli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   51 EFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999999999999999999999999999999999888888887766543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.47  E-value=4.2e-13  Score=139.75  Aligned_cols=130  Identities=38%  Similarity=0.555  Sum_probs=121.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC-----HHHHHHHHhcCC--CCCCCCCC
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN-----LSIVRLLLAAKQ--CNVNAQDY  873 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~-----~~iv~~LL~~g~--~dvn~~d~  873 (936)
                      ...+..+.++++.++..+..+++++++..|++++..+ ..|.||||+|+..|+     .+++++|++.|.  .+.+.+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccccc-CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            4556678999999999999999999999999998888 999999999999999     999999999993  37777899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       874 ~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      .|+||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.+++++|++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999998854

>KOG1710|consensus

Probab=99.41  E-value=1.3e-12  Score=128.37  Aligned_cols=123  Identities=24%  Similarity=0.294  Sum_probs=114.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCCcHHHHHHHcC
Q psy8454         808 YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQ-DYRGNTALHYAAINN  886 (936)
Q Consensus       808 ~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~-d~~g~TpL~~A~~~g  886 (936)
                      ..||.-++-.|+.+....||+---++|.+| ..|+|+|..|+..|+.++|++|++.| +|+|.. +..+.||||+|+..|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D-~sGMs~LahAaykGnl~~v~lll~~g-aDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRD-PSGMSVLAHAAYKGNLTLVELLLELG-ADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccC-CCcccHHHHHHhcCcHHHHHHHHHhC-CCcCcccccccccHHHHHHHcC
Confidence            568999999999999999998877799999 89999999999999999999999999 999974 668999999999999


Q ss_pred             CHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         887 HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       887 ~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      +.++-++|++.||.++..|.-|+||-.+|+.-||-++|..+-++-+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            9999999999999999999999999999999999999998866543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=3.1e-13  Score=105.03  Aligned_cols=56  Identities=50%  Similarity=0.686  Sum_probs=32.8

Q ss_pred             HHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHH
Q psy8454         860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA  915 (936)
Q Consensus       860 LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A  915 (936)
                      ||++|.+++|.+|..|+||||+||++|+.++|++|+++|++++++|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777789999999999999999999999999999999999999999999999987

>KOG1710|consensus

Probab=99.34  E-value=7.1e-12  Score=123.22  Aligned_cols=124  Identities=35%  Similarity=0.485  Sum_probs=111.9

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      ...++|+.|+..|+.+....||.....                                 ++.+|.+|.|+|..|+..|+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~---------------------------------vn~~D~sGMs~LahAaykGn   57 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQ---------------------------------VNQRDPSGMSVLAHAAYKGN   57 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhh---------------------------------hhccCCCcccHHHHHHhcCc
Confidence            455699999999999999999987433                                 34489999999999999999


Q ss_pred             HHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcc
Q psy8454         535 IKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN  611 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~  611 (936)
                      .+++++|++.|+|+|. ++..+.||||+|+.+|+.++.++|++.|+.....+.-|+|+-.+|+--|+.+||..+=++-
T Consensus        58 l~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   58 LTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             HHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence            9999999999999985 4567899999999999999999999999999999999999999999999999998886543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=2.6e-12  Score=99.37  Aligned_cols=54  Identities=33%  Similarity=0.527  Sum_probs=28.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHh
Q psy8454         875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT  928 (936)
Q Consensus       875 g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll  928 (936)
                      |+||||.|++.|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            455555555555555555555555555555555555555555555555555553

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=5.2e-12  Score=150.39  Aligned_cols=106  Identities=28%  Similarity=0.341  Sum_probs=99.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy8454         809 TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHT  888 (936)
Q Consensus       809 t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~  888 (936)
                      +.|+.|+..|+.+.++.|+++|++++..+ ..|.||||+||..|+.+++++|++.| +++|.+|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d-~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRD-YDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcH
Confidence            46889999999999999999999999998 89999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHHHHc-------CCCCcCcccCCCcHHHHHH
Q psy8454         889 NLATLLLKS-------GARPQIKNHYGQTCLHMAQ  916 (936)
Q Consensus       889 ~iv~~LL~~-------Ga~~~~~d~~g~T~L~~A~  916 (936)
                      +++++|+++       |++++..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999999       9999998988888776654

>KOG0515|consensus

Probab=99.31  E-value=4.7e-12  Score=134.02  Aligned_cols=116  Identities=28%  Similarity=0.235  Sum_probs=104.4

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy8454         811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL  890 (936)
Q Consensus       811 L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~i  890 (936)
                      |.=|+..|-+|+|+-.+..-.|+..-+ ..|.||||-|+-.||.+||+||++.| +++|+.|.+||||||+|+.++++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpN-dEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPN-DEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCC-ccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchhhhhhhcCchHH
Confidence            445788999999999999999998888 89999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHcCCCCcCc-ccCCCcHHHHHHH--cCCHHHHHHHh
Q psy8454         891 ATLLLKSGARPQIK-NHYGQTCLHMAQQ--MTSLSLVRVLT  928 (936)
Q Consensus       891 v~~LL~~Ga~~~~~-d~~g~T~L~~A~~--~g~~~iv~~Ll  928 (936)
                      ++.|.++||-+.+. =.++.||.+-+-.  .|..+|.+||-
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999987664 3467788887754  48899999984

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.31  E-value=4e-12  Score=98.37  Aligned_cols=54  Identities=48%  Similarity=0.714  Sum_probs=38.8

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8454         841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL  895 (936)
Q Consensus       841 g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL  895 (936)
                      |+||||+||+.|+.+++++|++.| +|+|.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888876 788888888888888888888888888875

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.29  E-value=2.6e-11  Score=126.22  Aligned_cols=127  Identities=43%  Similarity=0.550  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc-----HHHHHHHHhCCC---CCCcCCCCCC
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH-----QNVLLLLLHSGA---SINLTDNEGN  589 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~g~---~~~~~d~~g~  589 (936)
                      .+..+.++++.|+..+..+++++++..|++++.++..|.||||+|+..|+     .+++++|++.|+   ..+.+|..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            56678999999999999999999999999999999999999999999999     999999999999   5666799999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454         590 TALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG  650 (936)
Q Consensus       590 t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  650 (936)
                      ||||+|+..|+.++++.|++.+      .+++..+..|.|+++.|+..++.++++.+++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~------~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAG------ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcC------CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999865      567788999999999999999999999999976

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.26  E-value=4.6e-12  Score=98.47  Aligned_cols=55  Identities=42%  Similarity=0.559  Sum_probs=26.3

Q ss_pred             HHhCC-CCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454         826 LINYR-ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA  882 (936)
Q Consensus       826 LL~~g-~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A  882 (936)
                      ||++| ++++..+ ..|+||||+||.+|+.++|++|++.| +|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQD-KYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcC-CCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            46666 6777777 77777888887777888888777666 77788888888887776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.25  E-value=2.6e-11  Score=144.46  Aligned_cols=87  Identities=29%  Similarity=0.449  Sum_probs=84.5

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHH
Q psy8454         843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS  922 (936)
Q Consensus       843 TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~  922 (936)
                      +.|+.|+..|+.+++++|++.| +++|.+|..|+||||+|+.+|+.++|++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            3588999999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q psy8454         923 LVRVLTHE  930 (936)
Q Consensus       923 iv~~Ll~~  930 (936)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            99999987

>KOG0515|consensus

Probab=99.24  E-value=2.8e-11  Score=128.23  Aligned_cols=121  Identities=30%  Similarity=0.413  Sum_probs=102.7

Q ss_pred             ChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         456 SLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI  535 (936)
Q Consensus       456 ~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  535 (936)
                      +.-.|..|+-.|.+|.|+.++.+-.+...                                 .++.|-|+||-|+..||.
T Consensus       550 PLaLLLDaaLeGEldlVq~~i~ev~DpSq---------------------------------pNdEGITaLHNAiCaghy  596 (752)
T KOG0515|consen  550 PLALLLDAALEGELDLVQRIIYEVTDPSQ---------------------------------PNDEGITALHNAICAGHY  596 (752)
T ss_pred             hHHHHHhhhhcchHHHHHHHHHhhcCCCC---------------------------------CCccchhHHhhhhhcchh
Confidence            34467899999999999999988765432                                 577899999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcC-CCCCCcHHHHH--HHcCcHHHHHHHHh
Q psy8454         536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT-DNEGNTALHLA--TNNGHETCVKALIY  609 (936)
Q Consensus       536 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-d~~g~t~L~~A--~~~g~~eiv~~Ll~  609 (936)
                      +||++|++.|+++|+.|.+||||||+|+.+++..+++.|++.|+-+-.. -.++.|+..-+  ...|..+|.+||-.
T Consensus       597 eIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  597 EIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999877643 35677877654  34677888888864

>KOG2320|consensus

Probab=98.82  E-value=1.2e-07  Score=103.42  Aligned_cols=153  Identities=15%  Similarity=0.238  Sum_probs=110.5

Q ss_pred             HHHHHHHhhHHHHhcccCcc-------ChHHHHHHHHHHHhccC---CCCcccccc---cccccchHHHHHHHhcccccC
Q psy8454         247 VETYMHHGIYKTLIKGITAC-------TALEDAQFNKMIRNLSD---IQLKDLDIR---EDLYDTVPRARSEISHIDCYS  313 (936)
Q Consensus       247 ~E~yv~~~ly~~~~~~~~~~-------~~~~d~~l~~~~~~l~~---~~~~~l~i~---~~~~~~~~~a~~~l~~i~~~~  313 (936)
                      +|-.+..-+|.-+..+++..       ....|-.+++.=.++.-   -.+..||+-   |+. ..+++...-|.+|-+..
T Consensus       339 leavlEs~Lhk~vLkPlkp~l~~~l~~~h~~dGsl~~l~en~~vvr~~~~~~lG~~~~~Ps~-~~mEqvk~k~~~m~r~Y  417 (651)
T KOG2320|consen  339 LEAVLESALHKSVLKPLKPNLSAQLPPVHSKDGSLQQLKENQDVVRAANPTALGVFLSTPSD-VLMEQVKQKFTAMQRRY  417 (651)
T ss_pred             HHHHHHHHHHHhhccccchhHhhhcchhhhhccHHHHHhcccceecccCccccceeccCCcH-HHHHHHHHHHHHHHHhh
Confidence            44445555555555544321       12234444333333322   456667772   111 23455566788888999


Q ss_pred             CcchhHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHH
Q psy8454         314 TILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITS  393 (936)
Q Consensus       314 ~p~~Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~  393 (936)
                      +|..|+..++++|+.|...... ......-+||||+|+|.||+.|++.+.+.-++.||.+|..++..   .||.|||+|+
T Consensus       418 SP~kkl~~Llk~ckLly~~~~~-~~~g~~~gaDdflP~lsyvla~s~~~e~~~e~eYM~ELLdP~l~---~geggYYLTs  493 (651)
T KOG2320|consen  418 SPSKKLHALLKACKLLYAGMGG-DNEGLAYGADDFLPVLSYVLARSDLQELLTEAEYMMELLDPDLL---SGEGGYYLTS  493 (651)
T ss_pred             ChHHHHHHHHHHHHHHHHHhcc-CCCCCCCCchhhHHHHHHHHHhcchhcchHHHHHHHHhcChhhh---cCccchhHHH
Confidence            9999999999999999875442 23457789999999999999999999999999999999886655   6999999999


Q ss_pred             HHHHHHHHHcC
Q psy8454         394 LEASIEHIKSG  404 (936)
Q Consensus       394 ~~aa~~~i~~~  404 (936)
                      +-+|+++|++.
T Consensus       494 ~~~al~~iks~  504 (651)
T KOG2320|consen  494 LYGALEHIKSL  504 (651)
T ss_pred             HHHHHHHHhcc
Confidence            99999999876

>KOG0506|consensus

Probab=98.70  E-value=1.6e-08  Score=106.63  Aligned_cols=93  Identities=23%  Similarity=0.313  Sum_probs=75.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      +.++...+++|++.|++..++.+.-.|.|++..+ .+.+|+||.|+..|+++++++|++..++|++.+|..|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKD-YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccc-cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            4556677888888888888888888888888777 777888888888888888888888877888888888888888888


Q ss_pred             HcCCHHHHHHHHHc
Q psy8454         884 INNHTNLATLLLKS  897 (936)
Q Consensus       884 ~~g~~~iv~~LL~~  897 (936)
                      ..+|.+++++|-++
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            88888888888764

>KOG0782|consensus

Probab=98.69  E-value=4.4e-08  Score=104.86  Aligned_cols=120  Identities=23%  Similarity=0.222  Sum_probs=108.6

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCC-CCCCCCCCCcHHHHHHHcCCHH
Q psy8454         811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCN-VNAQDYRGNTALHYAAINNHTN  889 (936)
Q Consensus       811 L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~d-vn~~d~~g~TpL~~A~~~g~~~  889 (936)
                      +..|+..+++--++....+|.++-.++ ....|.||+|++.|+-+||+++|++|+.. ++..|..|.|+||-|+-.++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~-~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQG-PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeC-cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            566777888887888889999988888 78889999999999999999999998544 5778899999999999999999


Q ss_pred             HHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         890 LATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       890 iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +.++|.+.||.+--+|..|.||-+.|.+.|..++..||-.+-
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            999999999999999999999999999999999999997653

>KOG0783|consensus

Probab=98.68  E-value=1.3e-08  Score=113.92  Aligned_cols=78  Identities=36%  Similarity=0.403  Sum_probs=52.6

Q ss_pred             cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHH
Q psy8454         839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY-RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ  917 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~-~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~  917 (936)
                      ..|+|+||+|+..|..++++||+++| +|++.+|. .|+||||-|+.+|++|++-.||.+|+.+.+.|+.|.+||+.-++
T Consensus        50 ~~GR~alH~~~S~~k~~~l~wLlqhG-idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   50 RYGRTALHIAVSENKNSFLRWLLQHG-IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hhccceeeeeeccchhHHHHHHHhcC-ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            56666666666666666666666665 66666665 46666666666666666666666666666666666666666555

>PF13606 Ank_3: Ankyrin repeat

Probab=98.66  E-value=2.8e-08  Score=65.46  Aligned_cols=30  Identities=40%  Similarity=0.567  Sum_probs=23.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Q psy8454         874 RGNTALHYAAINNHTNLATLLLKSGARPQI  903 (936)
Q Consensus       874 ~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~  903 (936)
                      +|+||||+||++|+.++|++|+++|+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            477888888888888888888888877763

>KOG0506|consensus

Probab=98.64  E-value=2.7e-08  Score=104.87  Aligned_cols=91  Identities=26%  Similarity=0.434  Sum_probs=85.6

Q ss_pred             cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCcccCCCcHHHHHHH
Q psy8454         839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS-GARPQIKNHYGQTCLHMAQQ  917 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~-Ga~~~~~d~~g~T~L~~A~~  917 (936)
                      .++..++++|++.|.+..++.+.-.| .|++.+|.+.+|+||+|+..|+.+++++|++. +.+++.+|..|+|||+-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQG-MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhc-ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            56677999999999999999998888 99999999999999999999999999999975 89999999999999999999


Q ss_pred             cCCHHHHHHHhhh
Q psy8454         918 MTSLSLVRVLTHE  930 (936)
Q Consensus       918 ~g~~~iv~~Ll~~  930 (936)
                      .+|.+++++|.+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            9999999999764

>KOG0818|consensus

Probab=98.61  E-value=1.2e-07  Score=100.40  Aligned_cols=87  Identities=29%  Similarity=0.372  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy8454         810 ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN  889 (936)
Q Consensus       810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~  889 (936)
                      -||..++.|+.++.--||..|+++|.-....|.||||.|++.|+.--+++|+-+| +|+++.|.+|.||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCCCcHHHHHHhcCchH
Confidence            3888889999998888899999999888788889999999999888888888888 899999999999999998888888


Q ss_pred             HHHHHHHc
Q psy8454         890 LATLLLKS  897 (936)
Q Consensus       890 iv~~LL~~  897 (936)
                      +..-|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            88888763

>KOG0818|consensus

Probab=98.58  E-value=1.6e-07  Score=99.46  Aligned_cols=86  Identities=30%  Similarity=0.306  Sum_probs=78.8

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH
Q psy8454         843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSL  921 (936)
Q Consensus       843 TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d-~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~  921 (936)
                      --||..++.|++++--.||..| +++|-.+ ..|.||||+|++.|+.--+++|+=+|||+++.|..|+||+++|-..||-
T Consensus       135 rQLhasvRt~nlet~LRll~lG-A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLG-AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcc-cccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            3588899999999998999999 9999866 4799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy8454         922 SLVRVLTH  929 (936)
Q Consensus       922 ~iv~~Ll~  929 (936)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            98888765

>KOG0783|consensus

Probab=98.58  E-value=2.7e-08  Score=111.35  Aligned_cols=86  Identities=28%  Similarity=0.324  Sum_probs=82.3

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL  879 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL  879 (936)
                      .|..|..|+|+||+|+..|..++++|||++|++++..|...|+||||-|+.+|+++++-+||.+| +-+..+|+.|..||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCCCHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHcC
Q psy8454         880 HYAAINN  886 (936)
Q Consensus       880 ~~A~~~g  886 (936)
                      ...++-.
T Consensus       124 q~~~r~~  130 (1267)
T KOG0783|consen  124 QFLSRVL  130 (1267)
T ss_pred             HHHhhcc
Confidence            9998843

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.54  E-value=1.1e-07  Score=64.79  Aligned_cols=32  Identities=47%  Similarity=0.745  Sum_probs=25.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcc
Q psy8454         874 RGNTALHYAAINNHTNLATLLLKSGARPQIKN  905 (936)
Q Consensus       874 ~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d  905 (936)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888887776

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.52  E-value=3.2e-07  Score=98.48  Aligned_cols=120  Identities=24%  Similarity=0.250  Sum_probs=96.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      ..+..|+..+|+-.++.....|.+...                                 ++....|+||+|+..|+-++
T Consensus       868 eeil~av~~~D~~klqE~h~~gg~ll~---------------------------------~~~~~~sllh~a~~tg~~ei  914 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHLNGGSLLI---------------------------------QGPDHCSLLHYAAKTGNGEI  914 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCceEe---------------------------------eCcchhhHHHHHHhcCChHH
Confidence            456778888887776666666544322                                 45667889999999999999


Q ss_pred             HHHHHhcCCC--CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy8454         538 VDLVLELGAD--TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF  610 (936)
Q Consensus       538 v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  610 (936)
                      |+|++++|..  .+..|..|.|+||-|+..++-.+..+|++.|+++..+|..|.||-.-|-+.|+.+...||-+.
T Consensus       915 vkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  915 VKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999998764  456678899999999988888899999999999998999999999999999999998888753

>KOG0705|consensus

Probab=98.47  E-value=8e-07  Score=96.20  Aligned_cols=238  Identities=17%  Similarity=0.220  Sum_probs=142.2

Q ss_pred             cchHHHHH--HHhcccccCCcchhHHHHHHH----HHHHHhhcccccccCCCCCccc--------hhhHHHhHhhhcCCc
Q psy8454         297 DTVPRARS--EISHIDCYSTILGKIGCVRRC----ISAISKEDTRDKLQGNIITVDD--------LLPMIVFLVVKCALP  362 (936)
Q Consensus       297 ~~~~~a~~--~l~~i~~~~~p~~Kl~~l~~~----~~~i~~~~~~~~~~~~~~~aD~--------llp~li~vvi~a~~~  362 (936)
                      ..|.+|++  .|..+..+.+...|...--..    ++.|-+    ...+...++.+.        =|.+|+.+-+-.=-+
T Consensus       469 daWvQai~sqIlaSlq~cessk~Ks~~~sqsea~a~qairn----~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr  544 (749)
T KOG0705|consen  469 DAWVQAIQSQILASLQSCESSKSKSRLTSQSEAMALQAIRN----MRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHR  544 (749)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcchhccchhhhHHHHHHHhc----CcCCceeeecCCCCcccccccCCeEEEEEchhhhh
Confidence            34777776  455667777777775532221    222222    111222222222        233343333322247


Q ss_pred             chHHHHHHHHHhccCCCCCcccCcchhhHHHHHHHH-HHHHcCcCCCCCCccccCCcchHHHHhhhcCCccccchhhhhh
Q psy8454         363 NWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASI-EHIKSGLLIGPSEPEALMSYDDQEELANAKFKPTVEMSDLTTQ  441 (936)
Q Consensus       363 ~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~~aa~-~~i~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (936)
                      ||.+|+.-++..-..+-.    -|.--.+++....+ .-+..+......++....++-+++.|.+.|+.--.-.+     
T Consensus       545 ~lgt~lSrvr~LeLDdWP----vEl~~Vm~aiGN~~AN~vWE~~~~G~~KPs~~s~REEkErwIr~KYeqklFLa-----  615 (749)
T KOG0705|consen  545 NLGTHLSRVRSLELDDWP----VELLKVMSAIGNDLANSVWEGSSQGQTKPSPDSSREEKERWIRAKYEQKLFLA-----  615 (749)
T ss_pred             hhhhhhhhhhccccccCc----HHHHHHHHHhhhhHHHHHhhhhccCCcCCCccccHHHHHHHHHHHHHHHhhcC-----
Confidence            899999888766443311    34333344333222 11222233333455555566667776665543211110     


Q ss_pred             hHHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCC
Q psy8454         442 LKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDR  521 (936)
Q Consensus       442 ~~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (936)
                            -+......--..|+.|+...|+..+-.||.+|......                             ....+..
T Consensus       616 ------Pl~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~-----------------------------~t~~~~~  660 (749)
T KOG0705|consen  616 ------PLPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVN-----------------------------ETCGEGD  660 (749)
T ss_pred             ------CCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhh-----------------------------ccccCCC
Confidence                  00000111124689999999999999999998764332                             1124566


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCC
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASIN  582 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~  582 (936)
                      |.|+||+||+.|++.+.++|+=+|+|+..+|..|+|+|.||-+.|..+++..|+++|+.-+
T Consensus       661 grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  661 GRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            8999999999999999999998999999999999999999999999999999999987643

>KOG0705|consensus

Probab=98.39  E-value=7.9e-07  Score=96.23  Aligned_cols=89  Identities=27%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCC--cccc-cccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC
Q psy8454         811 LHIATSLGHYDLVRLLINYRAD--INIV-TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH  887 (936)
Q Consensus       811 L~~Aa~~g~~~~v~~LL~~g~~--v~~~-~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~  887 (936)
                      |..|+...++..+-+||.+|..  +|.. .+..|+|+||+||..|++.+.++|+=+| +|+-++|.+|+|||.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhccc
Confidence            5677778889999999999854  3322 2367799999999999999999999988 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy8454         888 TNLATLLLKSGAR  900 (936)
Q Consensus       888 ~~iv~~LL~~Ga~  900 (936)
                      .+|+..|+++|..
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>PF13606 Ank_3: Ankyrin repeat

Probab=98.38  E-value=4.5e-07  Score=59.72  Aligned_cols=28  Identities=54%  Similarity=0.731  Sum_probs=17.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGADTN  549 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  549 (936)
                      |+||||+|+..|+.+++++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666655

>KOG2319|consensus

Probab=98.32  E-value=1.8e-06  Score=98.37  Aligned_cols=160  Identities=18%  Similarity=0.233  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhccCCCCcccccccccc-----cchHHHHHHHhcccccCC
Q psy8454         240 IDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDLY-----DTVPRARSEISHIDCYST  314 (936)
Q Consensus       240 ~~~i~~~~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l~~~~~~~l~i~~~~~-----~~~~~a~~~l~~i~~~~~  314 (936)
                      ......-.+.+.+..+|..++......+..+|..++..++.++++++..++|+..-.     .+...+...+..|+.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  254 (477)
T KOG2319|consen  175 ENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELLT  254 (477)
T ss_pred             HHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccccccccccchhHHHHHHHHHHHHHHHhhc
Confidence            344555677788999999999999999999999999999999999999999974333     467888899999999999


Q ss_pred             cch-hHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHH
Q psy8454         315 ILG-KIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITS  393 (936)
Q Consensus       315 p~~-Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~  393 (936)
                      |++ |..|.++|++.+......  ......++|+++|.++|.+.+.+++++.++.+|+..|+.....   .++..|+..+
T Consensus       255 ~~~~~~~~~~~~~~~~f~~l~~--~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~---~~~~~~~~~~  329 (477)
T KOG2319|consen  255 PRDKKEACALNCEKPIFSALKI--TDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERL---SGEEKYYLFT  329 (477)
T ss_pred             chhhhHHHHHHHHHHHHhhhhc--cchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhh---hccchhhhhh
Confidence            999 799999999999985442  2335679999999999999999999999999999999998877   6888899888


Q ss_pred             HHHHHHHHHcC
Q psy8454         394 LEASIEHIKSG  404 (936)
Q Consensus       394 ~~aa~~~i~~~  404 (936)
                      +..+..++...
T Consensus       330 ~~~~~~~~~~~  340 (477)
T KOG2319|consen  330 YACASSDIFDA  340 (477)
T ss_pred             hhhhhhhhhhh
Confidence            88887776544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.31  E-value=9e-07  Score=60.20  Aligned_cols=31  Identities=45%  Similarity=0.636  Sum_probs=17.0

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC
Q psy8454         841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD  872 (936)
Q Consensus       841 g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d  872 (936)
                      |+||||+|+..|+.+++++|+++| ++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHG-ADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCc-CCCCCCC
Confidence            455555555555555555555555 5555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG2384|consensus

Probab=98.30  E-value=1e-06  Score=82.44  Aligned_cols=63  Identities=27%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcCcccCCCcHHHHHHHcCCHHHHHHHhh
Q psy8454         867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSG-ARPQIKNHYGQTCLHMAQQMTSLSLVRVLTH  929 (936)
Q Consensus       867 dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~G-a~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~  929 (936)
                      ++|++|..||||||+|+..|+.+.+.||+++| +.+.++|..|++++.+|-+.|+.++|..|.+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe   67 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE   67 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHH
Confidence            44555555555555555555555555555555 4555555555555555555555555555443

>KOG0522|consensus

Probab=98.28  E-value=1.8e-06  Score=93.38  Aligned_cols=86  Identities=24%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             cHHHHHHHcCCHHHHHHHH--hCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC
Q psy8454         809 TALHIATSLGHYDLVRLLI--NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN  886 (936)
Q Consensus       809 t~L~~Aa~~g~~~~v~~LL--~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g  886 (936)
                      -|||.++.....+-+..++  +.+..++..+ ..|.||||+|+..|+.+.++.|+.+| +|+..+|..|++|||-|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D-~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRD-PPGRTPLHLAVRLGHVEAARILLSAG-ADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceecccc-CCCCccHHHHHHhcCHHHHHHHHhcC-CCccccccccccHHHHHHHcC
Confidence            3577776666555444322  3334455555 66677777777777777777777776 777777777777777777777


Q ss_pred             CHHHHHHHHH
Q psy8454         887 HTNLATLLLK  896 (936)
Q Consensus       887 ~~~iv~~LL~  896 (936)
                      +..++..++.
T Consensus       100 ~~q~i~~vlr  109 (560)
T KOG0522|consen  100 NEQIITEVLR  109 (560)
T ss_pred             CHHHHHHHHH
Confidence            7766666654

>KOG3609|consensus

Probab=98.22  E-value=3.8e-06  Score=96.40  Aligned_cols=125  Identities=25%  Similarity=0.249  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC
Q psy8454         739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG  818 (936)
Q Consensus       739 ~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g  818 (936)
                      ....+..|+..|+...|+..++....                               ...++|..|.-|+++|+.|+.+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~-------------------------------~~lninc~d~lGr~al~iai~ne   73 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV-------------------------------SKLNINCRDPLGRLALHIAIDNE   73 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc-------------------------------cccchhccChHhhhceecccccc
Confidence            44568889999999999998863321                               33568999999999999999999


Q ss_pred             CHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCC----------CCCCCCCCcHHHHHHHcCCH
Q psy8454         819 HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV----------NAQDYRGNTALHYAAINNHT  888 (936)
Q Consensus       819 ~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dv----------n~~d~~g~TpL~~A~~~g~~  888 (936)
                      +.+++++|+++...+        -.+|.+|+..|..++|++++.+. .+.          ...-..+-|||++||..++.
T Consensus        74 nle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~-~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nny  144 (822)
T KOG3609|consen   74 NLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHF-VDAPYLERSGDANSPHFTPDITPLMLAAHLNNF  144 (822)
T ss_pred             cHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcc-cccchhccccccCcccCCCCccHHHHHHHhcch
Confidence            999999999998765        15899999999999999999885 111          12223578999999999999


Q ss_pred             HHHHHHHHcCCCCcC
Q psy8454         889 NLATLLLKSGARPQI  903 (936)
Q Consensus       889 ~iv~~LL~~Ga~~~~  903 (936)
                      ||+++|+++|+++..
T Consensus       145 Eil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  145 EILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHcCCCCCC
Confidence            999999999998654

>KOG0521|consensus

Probab=98.20  E-value=1.2e-06  Score=103.92  Aligned_cols=99  Identities=32%  Similarity=0.386  Sum_probs=87.4

Q ss_pred             CCCCccccc-ccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccC
Q psy8454         829 YRADINIVT-RVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY  907 (936)
Q Consensus       829 ~g~~v~~~~-~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~  907 (936)
                      +|++++..+ ...|.|+||.|+..|..-++++|+++| +++|..|..|+||||.+...|+...+..|+++||+.++.+..
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~g-a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~  721 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNG-ADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPD  721 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcC-CcchhhhccCCCcchhhhhhcccchhhhhccccccccccCcc
Confidence            344444321 156789999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHh
Q psy8454         908 GQTCLHMAQQMTSLSLVRVLT  928 (936)
Q Consensus       908 g~T~L~~A~~~g~~~iv~~Ll  928 (936)
                      |++|+++|....+.+++-+|.
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             CcchhhHHhhhccccHHHHHh
Confidence            999999998888888887764

>KOG0522|consensus

Probab=98.06  E-value=9.1e-06  Score=88.09  Aligned_cols=86  Identities=30%  Similarity=0.371  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCHHHH-HHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHH
Q psy8454         844 PLHIACQNNNLSIV-RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS  922 (936)
Q Consensus       844 pLh~A~~~g~~~iv-~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~  922 (936)
                      |||+++.....+-. +.|...-...++..|..|+||||+|+.-|+.+.++.|+.+||++..+|+.|++|||.|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            36666555444433 22222222455666666667777777767777777777666666666666777777777666666


Q ss_pred             HHHHHhh
Q psy8454         923 LVRVLTH  929 (936)
Q Consensus       923 iv~~Ll~  929 (936)
                      ++.-++.
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            6555544

>KOG3609|consensus

Probab=97.94  E-value=2.9e-05  Score=89.29  Aligned_cols=122  Identities=24%  Similarity=0.268  Sum_probs=100.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCC----CCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         805 SDGYTALHIATSLGHYDLVRLLINYR----ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       805 ~~g~t~L~~Aa~~g~~~~v~~LL~~g----~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      ..+.-....|+.+|+...|+..++..    .++|.++ .-|+++|+.|+.+.+.+++++|++++ ...       ..||-
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d-~lGr~al~iai~nenle~~eLLl~~~-~~~-------gdALL   93 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRD-PLGRLALHIAIDNENLELQELLLDTS-SEE-------GDALL   93 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccC-hHhhhceecccccccHHHHHHHhcCc-ccc-------chHHH
Confidence            34555678899999999999988653    4678888 89999999999999999999999987 222       45999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC----------cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         881 YAAINNHTNLATLLLKSGARP----------QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       881 ~A~~~g~~~iv~~LL~~Ga~~----------~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      +|+..|..++|++++.+-...          ...-.-+.|||.+||...|.+|+++|+.+|..+.
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999999999999863322          1223357899999999999999999999998874

>KOG2319|consensus

Probab=97.93  E-value=5.3e-06  Score=94.59  Aligned_cols=160  Identities=14%  Similarity=0.197  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhccC-CCCcccccccccc--cchHHHHHHHhcccccCCcc
Q psy8454         240 IDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSD-IQLKDLDIREDLY--DTVPRARSEISHIDCYSTIL  316 (936)
Q Consensus       240 ~~~i~~~~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l~~-~~~~~l~i~~~~~--~~~~~a~~~l~~i~~~~~p~  316 (936)
                      .+......++++|....+.+|. -.......|..........+. ..++..+..+.+.  ..+..|+.++.+++.+.+|.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~~~~~  110 (477)
T KOG2319|consen   32 LDEARDGLEKYVMTALFQRVFA-SDVEEVDADVLNEIDDSSLQTIISPEASGDQETFNQNTSIENAQSELEKIELYKAPH  110 (477)
T ss_pred             hhhccccccchhcccccccCcc-hhhhhhhhHhhhccccchhhhhcCHhhccCccchhhccchhhhcccccccccccCch
Confidence            5677889999999999999987 111122222222222222222 4555666655544  67999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHHHHH
Q psy8454         317 GKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEA  396 (936)
Q Consensus       317 ~Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~~a  396 (936)
                      +|+.|+.+|++.++.......  ....-+|+++|.+++++.+++++.+++++.|..+|+.....   .++.+|+++.+..
T Consensus       111 ~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l---~~~~~~~~~~~~~  185 (477)
T KOG2319|consen  111 DKLQCILSQCKLIFELLLKSS--IAPNQASQFLPVLIFVTKKANPQQFHSNVLYEMRNRREGPL---EGENKLYFTCEDS  185 (477)
T ss_pred             hHHHHHHHHHhhhhHHHHHhh--cccccccccccceeeeccccCchhhhhhHHHHHHHHHhhhH---HHHHHHHHHHhhH
Confidence            999999999999998433211  12223999999999999999999999999999999877765   4888999999999


Q ss_pred             HHHHHHcCc
Q psy8454         397 SIEHIKSGL  405 (936)
Q Consensus       397 a~~~i~~~~  405 (936)
                      +..++....
T Consensus       186 ~~~~~~~~~  194 (477)
T KOG2319|consen  186 AEAFISNIL  194 (477)
T ss_pred             HHHHHhccc
Confidence            999887543

>KOG0511|consensus

Probab=97.92  E-value=2.2e-05  Score=81.11  Aligned_cols=85  Identities=28%  Similarity=0.389  Sum_probs=69.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHH
Q psy8454         523 FTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHET  602 (936)
Q Consensus       523 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~e  602 (936)
                      .--|..||+.|.++.|++|++.|+++|++|....+||.+|+..||.++|++|+++|+--+.-.-+|...+. ++-+.  .
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y-gaLnd--~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY-GALND--R  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh-hhhhH--H
Confidence            55789999999999999999999999999999999999999999999999999999876655566666544 33332  3


Q ss_pred             HHHHHHhc
Q psy8454         603 CVKALIYF  610 (936)
Q Consensus       603 iv~~Ll~~  610 (936)
                      |=+.|+++
T Consensus       114 IR~mllsy  121 (516)
T KOG0511|consen  114 IRRMLLSY  121 (516)
T ss_pred             HHHHHHHH
Confidence            34455544

>KOG2384|consensus

Probab=97.92  E-value=2.1e-05  Score=73.89  Aligned_cols=67  Identities=19%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             CCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454         830 RADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS  897 (936)
Q Consensus       830 g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~  897 (936)
                      +.++|.+| ..|+||+|.|+..|+.+.+.||+..|-+.+..+|..|.+++.+|-+.|..++|+.|.++
T Consensus         2 e~~in~rD-~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARD-AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchh-hhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            34566666 67777777777777777777777777677777777777777777777777777777765

>KOG0520|consensus

Probab=97.88  E-value=1.3e-05  Score=94.22  Aligned_cols=129  Identities=20%  Similarity=0.250  Sum_probs=107.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcH
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTA  878 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~-g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~Tp  878 (936)
                      .....-.|.|.+|+++..+..-+++.+++- |-.....+ ..|.-.+|+ |..++.+++-+|+.-.+..++.+|..|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld-~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELD-RDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhc-ccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            345567899999999999999999999986 55555555 777788888 677788888777766668999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcC------cccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         879 LHYAAINNHTNLATLLLKSGARPQI------KNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       879 L~~A~~~g~~~iv~~LL~~Ga~~~~------~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      ||+|+..|+..++..|.+.|++.++      ..-.|.|+.+.|..+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999988876544      344699999999999999998888654

>KOG0511|consensus

Probab=97.76  E-value=7.2e-05  Score=77.42  Aligned_cols=85  Identities=27%  Similarity=0.444  Sum_probs=64.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC
Q psy8454         808 YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH  887 (936)
Q Consensus       808 ~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~  887 (936)
                      .--|..||+.|+.+.|+.|++.|.++|.++ ....+||.+|+..||.++|++||++| +-...-...|... |+++.+. 
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD-~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~RC-~YgaLnd-  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVD-RFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGDRC-HYGALND-  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhh-cccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcchh-hhhhhhH-
Confidence            345788999999999999999999999999 77789999999999999999999998 5555444455544 3444332 


Q ss_pred             HHHHHHHHHc
Q psy8454         888 TNLATLLLKS  897 (936)
Q Consensus       888 ~~iv~~LL~~  897 (936)
                       .+=+.||.+
T Consensus       113 -~IR~mllsy  121 (516)
T KOG0511|consen  113 -RIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHH
Confidence             344556654

>KOG0521|consensus

Probab=97.72  E-value=3e-05  Score=92.16  Aligned_cols=91  Identities=33%  Similarity=0.381  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      -..|.|+||.|+..|..-++++|+++|+++|..+ ..|+||||.+...|+...+..|++.| ++.++.+..|.+||++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d-~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALD-SKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhh-ccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhHHh
Confidence            4568899999999999999999999999999999 99999999999999999999999988 999999999999999998


Q ss_pred             HcCCHHHHHHHHH
Q psy8454         884 INNHTNLATLLLK  896 (936)
Q Consensus       884 ~~g~~~iv~~LL~  896 (936)
                      ...+.+++-+|.-
T Consensus       731 ~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  731 EAANADIVLLLRL  743 (785)
T ss_pred             hhccccHHHHHhh
Confidence            8877777666653

>KOG0520|consensus

Probab=97.67  E-value=4.7e-05  Score=89.62  Aligned_cols=134  Identities=23%  Similarity=0.269  Sum_probs=110.2

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHH-hCCCCCCcCCCCCCcHH
Q psy8454         515 TQSMDDRGFTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLL-HSGASINLTDNEGNTAL  592 (936)
Q Consensus       515 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~d~~g~t~L  592 (936)
                      .......|.+.+|+++..+...+++.+++. |......|..|.-.+|+++ .++.+...+|+ -.|..++.+|..|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            344667899999999999999999999986 6666777888888899954 44555554444 56788999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       593 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                      |+|+..|+..++..|.+.++....-.+.......|.|+-..|...|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998877665556666677799999999999999999988775

>smart00248 ANK ankyrin repeats

Probab=96.26  E-value=0.0073  Score=38.66  Aligned_cols=27  Identities=44%  Similarity=0.587  Sum_probs=15.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy8454         875 GNTALHYAAINNHTNLATLLLKSGARP  901 (936)
Q Consensus       875 g~TpL~~A~~~g~~~iv~~LL~~Ga~~  901 (936)
                      |.||+|+|+..|+.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666655544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.19  E-value=0.0077  Score=65.30  Aligned_cols=42  Identities=29%  Similarity=0.442  Sum_probs=21.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHH
Q psy8454         875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ  916 (936)
Q Consensus       875 g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~  916 (936)
                      --|+||+|+.+|.-++|.+||+.|+|+.++|..|+||.+++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            334555555555555555555555555555555555554444

>KOG2505|consensus

Probab=95.93  E-value=0.016  Score=62.98  Aligned_cols=85  Identities=19%  Similarity=0.188  Sum_probs=62.7

Q ss_pred             HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhh
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYV  680 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~  680 (936)
                      ++.|.+|.+++..-...+.....+.--.|+||+|+..|...+|.+||+.|+|+...|..|+||...+.+...-..+....
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a~~  483 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFIARR  483 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHHHHH
Confidence            56677777765322222223344455679999999999999999999999999999999999999998777776666555


Q ss_pred             cCCCc
Q psy8454         681 HKPKP  685 (936)
Q Consensus       681 ~~~~~  685 (936)
                      ..+..
T Consensus       484 ~l~es  488 (591)
T KOG2505|consen  484 VLNES  488 (591)
T ss_pred             Hhccc
Confidence            43333

>smart00248 ANK ankyrin repeats

Probab=95.34  E-value=0.027  Score=35.85  Aligned_cols=24  Identities=50%  Similarity=0.776  Sum_probs=12.1

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhcC
Q psy8454         841 QLTPLHIACQNNNLSIVRLLLAAK  864 (936)
Q Consensus       841 g~TpLh~A~~~g~~~iv~~LL~~g  864 (936)
                      |.||+|+|+..|+.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.33  E-value=0.089  Score=51.52  Aligned_cols=91  Identities=19%  Similarity=0.259  Sum_probs=62.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCC----CCcccccccCCCcHHHHHHh--CCCHHHHHHHHhcCCCCCCCC---CCCCCcH
Q psy8454         808 YTALHIATSLGHYDLVRLLINYR----ADINIVTRVKQLTPLHIACQ--NNNLSIVRLLLAAKQCNVNAQ---DYRGNTA  878 (936)
Q Consensus       808 ~t~L~~Aa~~g~~~~v~~LL~~g----~~v~~~~~~~g~TpLh~A~~--~g~~~iv~~LL~~g~~dvn~~---d~~g~Tp  878 (936)
                      .++|.+|+.++..+++-+|+.+-    -++...  ..+.--+.++..  ..+..|+++.++.|-+++|.+   -..|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            46888888888889998888752    111111  112223334333  346778888888888888864   3468888


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Q psy8454         879 LHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       879 L~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      |.-|+++++.+++.+||++||-
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            8888888888888888888874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.02  E-value=0.1  Score=51.14  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=85.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC----CCCcHHHHHHHc
Q psy8454         810 ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY----RGNTALHYAAIN  885 (936)
Q Consensus       810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~----~g~TpL~~A~~~  885 (936)
                      .|.-|+...+.+-+.-++...        ..-.++|.+|..++.-+++-+|+..-  .....|.    .+.--+.++...
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f--~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKF--NFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhc--ceecchhhhcCcchhhHHHHHhh
Confidence            466788888888777776532        33357999999999999999999863  2233332    233345555543


Q ss_pred             --CCHHHHHHHHHcC-CCCcC---cccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         886 --NHTNLATLLLKSG-ARPQI---KNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       886 --g~~~iv~~LL~~G-a~~~~---~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                        -+..++++.+++| +++|.   +-+.|.|.|+-|.++++.+|+.+|+++|+..-
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence              4566899999988 57765   45679999999999999999999999998653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.77  E-value=0.18  Score=48.13  Aligned_cols=137  Identities=16%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         741 EQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHY  820 (936)
Q Consensus       741 ~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~  820 (936)
                      -.+..|++.+-++++++.-+...+                                      .-..+++....||+..+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~--------------------------------------~~~~~q~LFElAC~~qky   89 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN--------------------------------------ERYLNQELFELACEEQKY   89 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc--------------------------------------chhHHHHHHHHHHHHccc
Confidence            356678899999998887652211                                      023456788999999999


Q ss_pred             HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHH----HHHhcCCCCCCCCCCCCC----cHHHHHHHcCCHHHHH
Q psy8454         821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR----LLLAAKQCNVNAQDYRGN----TALHYAAINNHTNLAT  892 (936)
Q Consensus       821 ~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~----~LL~~g~~dvn~~d~~g~----TpL~~A~~~g~~~iv~  892 (936)
                      |+|+|+-++-.-      .+-.+-+-.|...+.+++..    ++++.. ..-  .+.+-.    .-|..|+..|-++.|.
T Consensus        90 diV~WI~qnL~i------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~-~~~--~~~d~~~ll~~hl~~a~~kgll~F~l  160 (192)
T PF03158_consen   90 DIVKWIGQNLHI------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRM-MSE--HNEDPTSLLTQHLEKAAAKGLLPFVL  160 (192)
T ss_pred             cHHHHHhhccCC------CCchhhhhhhhhccchhHHHHHHHHHHhhc-ccc--cccCHHHHHHHHHHHHHHCCCHHHHH
Confidence            999999544322      22235677788888877632    333332 111  111111    2367899999999999


Q ss_pred             HHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         893 LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       893 ~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      -.+++|.+++.      ++|..|+.+.|..++.+++++
T Consensus       161 etlkygg~~~~------~vls~Av~ynhRkIL~yfi~q  192 (192)
T PF03158_consen  161 ETLKYGGNVDI------IVLSQAVKYNHRKILDYFIRQ  192 (192)
T ss_pred             HHHHcCCcccH------HHHHHHHHhhHHHHHHHhhcC
Confidence            99999988763      799999999999999998763

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.01  E-value=1.5  Score=42.17  Aligned_cols=137  Identities=11%  Similarity=0.080  Sum_probs=90.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHH
Q psy8454         459 KLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVV  538 (936)
Q Consensus       459 ~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  538 (936)
                      -|..|++.+-+.++++.=+......                                    ..+.+++-.||+..+.|+|
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~~------------------------------------~~~q~LFElAC~~qkydiV   92 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENER------------------------------------YLNQELFELACEEQKYDIV   92 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcch------------------------------------hHHHHHHHHHHHHccccHH
Confidence            3568889999999988876654321                                    1257899999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHH----HHHHhCCCCCCcCCCC--CCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454         539 DLVLELGADTNSQDLCGCSPLHYAATRGHQNVL----LLLLHSGASINLTDNE--GNTALHLATNNGHETCVKALIYFNE  612 (936)
Q Consensus       539 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv----~~Ll~~g~~~~~~d~~--g~t~L~~A~~~g~~eiv~~Ll~~~~  612 (936)
                      +|.-..   ..  -.+-.+.+..|...++.+..    .++.++..+-...|..  -..-|..|+..|-...+.-.+++|+
T Consensus        93 ~WI~qn---L~--i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg  167 (192)
T PF03158_consen   93 KWIGQN---LH--IYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGG  167 (192)
T ss_pred             HHHhhc---cC--CCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCC
Confidence            998332   21  12334567788888887763    2333332221111100  0123667889999998888888763


Q ss_pred             ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHH
Q psy8454         613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD  648 (936)
Q Consensus       613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  648 (936)
                      .      +      ..++|..|+.++|-.++.+++.
T Consensus       168 ~------~------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  168 N------V------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             c------c------cHHHHHHHHHhhHHHHHHHhhc
Confidence            1      1      1278999999999999888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.63  E-value=0.5  Score=39.06  Aligned_cols=47  Identities=23%  Similarity=0.403  Sum_probs=37.4

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454         843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS  897 (936)
Q Consensus       843 TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~  897 (936)
                      ..+..|+..|+.+|++.+++.+.  +      -...+..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--~------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--P------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--c------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            46788999999999999887651  1      14578999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.92  E-value=1.2  Score=36.80  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcC
Q psy8454         810 ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAK  864 (936)
Q Consensus       810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g  864 (936)
                      -+..|+..|+.|+++.+++.+   .     .-...+..|+..-+.++++||++..
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~---~-----~~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN---K-----PDNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh---c-----cHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            456666666666666666543   1     1124566666666666666666653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	936
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-34
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-24
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-18
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-21
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-17
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-19
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-19
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-14
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-19
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-19
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-18
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-15
1uoh_A	226	Human Gankyrin Length = 226		1e-18
1uoh_A	226	Human Gankyrin Length = 226		6e-15
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-18
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-16
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-18
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-18
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-18
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-15
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-17
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-15
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-17
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-15
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-13
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-13
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		9e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-14
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-16
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-16
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-15
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-15
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-10
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-14
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-14
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		6e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-13
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		7e-13
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-12
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-08
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		4e-12
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		7e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-12
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-12
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		6e-12
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-11
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-11
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-10
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-11
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-11
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		9e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-10
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		5e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-10
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		6e-10
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		8e-10
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-07
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		8e-10
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-09
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-09
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-09
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		4e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		5e-09
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		7e-09
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		7e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-08
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		3e-08
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		3e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		8e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		8e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		8e-06
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		3e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		3e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		5e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		7e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		7e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		1e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		6e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		2e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 200/421 (47%), Gaps = 71/421 (16%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
           T LH+AA  G  +V   +L+  A  N++     +PLH AA  GH N++ LLL + A+ NL
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII 643
               G+T LH+A   GH   V AL+   E+E    +   +  +G +PLH AA++G   + 
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALL---EKEA---SQACMTKKGFTPLHVAAKYGKVRVA 162
Query: 644 QLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPP 700
           +LLL+  A+P    K  +TPL  A   NNL + KL              L+P+     P 
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL--------------LLPRG--GSPH 206
Query: 701 SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS--- 757
           SP                         G  P +I             + N++++ +S   
Sbjct: 207 SP----------------------AWNGYTPLHIAA-----------KQNQVEVARSLLQ 233
Query: 758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL 817
           Y G +N E V      PL   A  +E   E  +  ++ +  N N+ N  G T LH+    
Sbjct: 234 YGGSANAESV--QGVTPLHLAA--QEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQE 288
Query: 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT 877
           GH  +  +LI +   ++  TR+   TPLH+A    N+ +V+ LL   Q +VNA+   G +
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYS 346
Query: 878 ALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS---LVRVLTHEAPFV 934
            LH AA   HT++ TLLLK+GA P   +  G T L +A+++  +S   +++V+T E  FV
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406
Query: 935 L 935
           L
Sbjct: 407 L 407

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 809 TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
           T LH+A+ +GH  +V+ L+   A  N V+ VK  TPLH+A +  +  + + LL  K   V
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNK-AKV 73
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           NA+     T LH AA   HTN+  LLL++ A P +    G T LH+A +   +  V  L
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  108 bits (271), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D  G T LHLA  NGH   VK L+          ++NA +  G +PLH AAR G+  
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 642 IIQLLLDHGA 651
           +++LLL+ GA
Sbjct: 116 VVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           +G T LH+A   GH ++V+LL+   AD+N   +  + TPLH+A +N +L +V+LLL A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            +VNA+D  G T LH AA N H  +  LLL++GA    K+  G+T LH+A +   L +V+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 926 VLTHEAPF 933
           +L     +
Sbjct: 119 LLLEAGAY 126

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 457 LTKLFEFARLGDGDKVRAILQ-EENKKEDSESL------PLCHPLCSCDDCEEAIN--LK 507
           + KL      GD + VR +L+  E   ED+E          CHPLC C  C  A     K
Sbjct: 12  VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAK 71
Query: 508 HSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH 567
              S          G + LHVAAL+GR  ++ L+L+ GA+  +++     PLH A  +GH
Sbjct: 72  VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH 131
Query: 568 QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG 627
             V+  LL S A  N  D  GNT L  A + GH   V  L+          +INA NN+G
Sbjct: 132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA------SINASNNKG 185
Query: 628 DSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
           ++ LH A    +  +++LLL HGA+  + NKR+ T +  A
Sbjct: 186 NTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 738 KKVEQLFALIENNEIKLIKSYFGLSNE--EKVPDNA-------CHPLCQCAKCKEDVVES 788
           ++VE+L   + + ++++++     + E  E   D         CHPLCQC KC       
Sbjct: 10  REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRL 69
Query: 789 ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA 848
              P +   L +N+ + DG + LH+A   G  DL+ LL+ + A+        Q  PLH+A
Sbjct: 70  AKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLA 126
Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
           CQ  +  +V+ LL +     N +D  GNT L YA    H  L  LLL+ GA     N+ G
Sbjct: 127 CQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 909 QTCLHMA 915
            T LH A
Sbjct: 186 NTALHEA 192

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           M + G  ++  A    + +V DL LE GAD N+ D  G +PLH AA  GH+ V+ LLL  
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDL-LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA  N  D++G T LHLA  NGH+  VK L+          + NA ++ G +PLH AA  
Sbjct: 60  GADPNAKDSDGKTPLHLAAENGHKEVVKLLL------SQGADPNAKDSDGKTPLHLAAEN 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G+  +++LLL  GA+P   +    TPL  A    N  V KLL
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +SDG T LH+A   GH ++V+LL++  AD N      + TPLH+A +N +  +V+
Sbjct: 29  DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LLL+ +  + NA+D  G T LH AA N H  +  LLL  GA P   +  G+T L +A++ 
Sbjct: 88  LLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREH 146
Query: 919 TSLSLVRVLTHEA 931
            +  +V++L  + 
Sbjct: 147 GNEEVVKLLEKQG 159

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           M + G  ++  A    + +V DL LE GAD N+ D  G +PLHYAA  GH+ ++ LLL  
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDL-LENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA  N  D++G T LH A  NGH+  VK L+          + NA ++ G +PLH AA  
Sbjct: 60  GADPNAKDSDGRTPLHYAAENGHKEIVKLLL------SKGADPNAKDSDGRTPLHYAAEN 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G+  I++LLL  GA+P   +    TPL  A    N  + KLL
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 783 EDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL 842
           +D++E+ + P        N  +SDG T LH A   GH ++V+LL++  AD N        
Sbjct: 21  KDLLENGADP--------NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGR 71
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           TPLH A +N +  IV+LLL+ K  + NA+D  G T LHYAA N H  +  LLL  GA P 
Sbjct: 72  TPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
             +  G+T L +A++  +  +V++L  + 
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           M + G  ++  A    + +V DL+ E GAD N+ D  G +PLHYAA  GH+ ++ LL+  
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA +N  D++G T LH A   GH+  VK LI          ++NA ++ G +PLH AA+ 
Sbjct: 60  GADVNAKDSDGRTPLHYAAKEGHKEIVKLLI------SKGADVNAKDSDGRTPLHYAAKE 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G+  I++LL+  GA+    +    TPL  A    N  + KLL
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +SDG T LH A   GH ++V+LLI+  AD+N        TPLH A +  +  IV+
Sbjct: 29  DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LL++ K  +VNA+D  G T LHYAA   H  +  LL+  GA     +  G+T L +A++ 
Sbjct: 88  LLIS-KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 919 TSLSLVRVLTHEA 931
            +  +V++L  + 
Sbjct: 147 GNEEIVKLLEKQG 159

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           M + G  ++  A    + +V DL+ E GAD N+ D  G +PLH+AA  GH+ V+ LL+  
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK 59
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA +N  D++G T LH A  NGH+  VK LI          ++NA ++ G +PLH AA  
Sbjct: 60  GADVNAKDSDGRTPLHHAAENGHKEVVKLLI------SKGADVNAKDSDGRTPLHHAAEN 113
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G+  +++LL+  GA+    +    TPL  A    N  V KLL
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +SDG T LH A   GH ++V+LLI+  AD+N        TPLH A +N +  +V+
Sbjct: 29  DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVK 87
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LL++ K  +VNA+D  G T LH+AA N H  +  LL+  GA     +  G+T L +A++ 
Sbjct: 88  LLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 919 TSLSLVRVLTHEA 931
            +  +V++L  + 
Sbjct: 147 GNEEVVKLLEKQG 159

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AAT GH  ++ +LL  GA +N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
           +T LHLA   GH   V+ L+          ++NAV+  GD+PLH AA  G+  I+++LL 
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGA------DVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 135 HGADVNAQDK 144

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  ++ G T LH+A + GH ++V +L+ + AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
            +  +   TPLH+A    +L IV +LL     +VNA D  G+T LH AAI  H  +  +L
Sbjct: 75  AID-IXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA  GH  ++ +LL  GA ++ +D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+          ++NA+++ G +PLH AA+WGY  I+++LL 
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGA------DVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 135 HGADVNAQDK 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  ++ G T LH+A   GH ++V +L+ + AD++
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
             + V   TPLH+A    +L IV +LL     +VNA D  G T LH AA   +  +  +L
Sbjct: 75  -ASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AAT GH  ++ +LL  GA +N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
           +T LHLA   GH   V+ L+          ++NAV+  GD+PLH AA  G+  I+++LL 
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGA------DVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 135 HGADVNAQDK 144

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  ++ G T LH+A + GH ++V +L+ + AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
            +  +   TPLH+A    +L IV +LL     +VNA D  G+T LH AAI  H  +  +L
Sbjct: 75  AID-IMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA+ GH  ++ +LL +GA +N +D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+          ++NA +N G +PLH AA++G+  I+++LL 
Sbjct: 81  ITPLHLAAATGHLEIVEVLLKHGA------DVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 135 HGADVNAQDK 144

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  ++DGYT LH+A S GH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
             + +  +TPLH+A    +L IV +LL     +VNA D  G+T LH AA   H  +  +L
Sbjct: 75  -ASDLTGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD G++ LH+AA  GR ++V  +L  GA  N+ +  GC+PLHYAA++    + ++LL  G
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ +  D+   TA+H A   G+   +  L+Y+        + N  + +G++PLH A    
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
                +LL+  GA+  +ENK + TPLQ A  
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVAKG 214

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
           + D  TALH A S GH ++V  L+     +N        +PLHIA       IV+ LL  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALLG- 94
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
           K   VNA +  G T LHYAA  N   +A +LL+ GA P  K+HY  T +H A    +L +
Sbjct: 95  KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 924 VRVL 927
           + +L
Sbjct: 155 IHIL 158

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD G++ LH+AA  GR ++V  +L  GA  N+ +  GC+PLHYAA++    + ++LL  G
Sbjct: 71  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ +  D+   TA+H A   G+   +  L+Y+        + N  + +G++PLH A    
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA------STNIQDTEGNTPLHLACDEE 184
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
                +LL+  GA+  +ENK + TPLQ A  
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVAKG 215

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
           + D  TALH A S GH ++V  L+     +N        +PLHIA       IV+ LL  
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLHIAASAGRDEIVKALLG- 95
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
           K   VNA +  G T LHYAA  N   +A +LL+ GA P  K+HY  T +H A    +L +
Sbjct: 96  KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 924 VRVL 927
           + +L
Sbjct: 156 IHIL 159

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA  GH  ++ +LL +GA +N  D  G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA + GH   V+ L+ +        ++NA +  G +PL+ AA WG+  I+++LL 
Sbjct: 69  TTPLHLAASLGHLEIVEVLLKYGA------DVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 123 HGADVNAQDK 132

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     + N  +  G T LH+A ++GH ++V +L+   AD+N
Sbjct: 6   LLEAARAGQD---DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
            V      TPLH+A    +L IV +LL     +VNA+D  G T L+ AA   H  +  +L
Sbjct: 63  AVD-TNGTTPLHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++  + +  L  +L
Sbjct: 121 LKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G+T LH+AA  G +++V+++L+ GAD N++D  G +PLH AA  GH  ++ +LL +G
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  D +G T LHLA   GH   V+ L+          ++NA +  G +P   A R G
Sbjct: 92  ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------AGADVNAQDKFGKTPFDLAIREG 145
Query: 639 YTSIIQLL 646
           +  I ++L
Sbjct: 146 HEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  + DGYT LH+A   GH ++V +L+   AD+N
Sbjct: 6   LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
              +    TPLH+A +  +L IV +LL A   +VNA+D  G T LH AA   H  +  +L
Sbjct: 63  AKDK-DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
           LK+GA    ++ +G+T   +A +     +  VL   A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPL------CHPLCSCDDCEEAINLKHS 509
           KL E AR G  D+VR ++    + N  +D  S PL       HP     +  E + LKH 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHP-----EIVEVL-LKHG 70
Query: 510 QSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
                  + D  G+T LH+AA  G +++V+++L+ GAD N+QD  G +PLH AA RGH  
Sbjct: 71  AD---VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
Query: 570 VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
           ++ +LL  GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA  GH  ++ +LL  GA +N  D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA +NGH   V+ L+ +        ++NA +  G +PLH AA  G+  I+++LL 
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGA------DVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 135 HGADVNAQDK 144

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G T LH+A  +GH ++V +L+ + AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
                   TPLH+A  N +L IV +LL     +VNAQD  G T LH AA   H  +  +L
Sbjct: 75  -ARDTDGWTPLHLAADNGHLEIVEVLLKYG-ADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 9/151 (5%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +N  D +G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+          ++NA +  G +PLH AAR G+  I+++LL 
Sbjct: 69  YTPLHLAAREGHLEIVEVLLK------AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 649 HGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            GA+   ++K   TP   A    N  +A++L
Sbjct: 123 AGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  + DGYT LH+A   GH ++V +L+   AD+N
Sbjct: 6   LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
              +    TPLH+A +  +L IV +LL A   +VNA+D  G T LH AA   H  +  +L
Sbjct: 63  AKDK-DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA 931
           LK+GA    ++ +G+T   +A    +  +  VL   A
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAIN--LKHSQSKP 513
           KL E AR G  D+VR ++    + N ++DS   PL   L +     E +   LKH     
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAEDDSGKTPL--HLAAIKGHLEIVEVLLKHGAD-- 72
Query: 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL 573
              + D  G T LH+AALYG +++V+++L+ GAD N+ D  G +PLH AA  GH  ++ +
Sbjct: 73  -VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
           LL  GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N++D  G +PLH AA +GH  ++ +LL  GA +N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
           +T LHLA   GH   V+ L+          ++NA +  G +PLH AA  G+  I+++LL 
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGA------DVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 YGADVNAQDK 144

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G T LH+A   GH ++V +L+ + AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
              ++   TPLH+A    +L IV +LL     +VNA D  G T LH AA   H  +  +L
Sbjct: 75  AADKMGD-TPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD G++ LH+AA  GR ++V  +L  GA  N+ +  GC+PLHYAA++    + ++LL  G
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ +  D+   TA+H A   G+   V  L+++        + N  + +G++PLH A    
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
                + L+  GA+  +ENK + TPLQ A  
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
           E + R + D+ L     + D  TALH A S GH ++V  L+     +N        +PLH
Sbjct: 21  ELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLH 78
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
           IA       IV+ LL  K  +VNA +  G T LHYAA  N   +A +LL+ GA P  K+H
Sbjct: 79  IAASAGRDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
           Y  T +H A    +L +V +L
Sbjct: 138 YDATAMHRAAAKGNLKMVHIL 158

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA  GH  ++ +LL  GA +N  DN G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA +NGH   V+ L+          ++NA + +G +PLH AA  G+  I+++LL 
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGA------DVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 YGADVNAQDK 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G+T LH+A   GH ++V +L+ Y AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
                   TPLH+A  N +L IV +LL     +VNA+DY G T LH AA + H  +  +L
Sbjct: 75  AWDNYGA-TPLHLAADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +N  D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+          ++NA +  G +PLH AAR G+  I+++LL 
Sbjct: 81  YTPLHLAAREGHLEIVEVLLK------AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
            GA+   ++K
Sbjct: 135 AGADVNAQDK 144

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  + DGYT LH+A   GH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
              +    TPLH+A +  +L IV +LL A   +VNA+D  G T LH AA   H  +  +L
Sbjct: 75  AKDK-DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK+GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 9/151 (5%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  GR   V +++  GAD N+ D+ G +PLH AA  GH  ++ +LL +GA +N  D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
           +T LHLA + GH   V+ L+          ++NA ++ G +PLH AA  G+  I+++LL 
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGA------DVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 649 HGANPTLENKRKVTPLQ---NANNLHVAKLL 676
           +GA+   ++K   T      N  N  +A++L
Sbjct: 135 YGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
           + E R +     ++N  +  G+T LH+A   GH ++V +L+   AD+N    +   TPLH
Sbjct: 27  DDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLH 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
           +A    +L IV +LL     +VNA+D  G T LH AA   H  +  +LLK GA    ++ 
Sbjct: 86  LAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
           +G+T   ++    +  L  +L
Sbjct: 145 FGKTAFDISINNGNEDLAEIL 165

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
           KL E AR G  D+VR ++    + N  +++   PL     S       + LKH       
Sbjct: 17  KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD---V 73
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
            + D  GFT LH+AA+ G +++V+++L+ GAD N+ D+ G +PLH AA  GH  ++ +LL
Sbjct: 74  DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKA 606
             GA +N  D  G TA  ++ +NG+E   K+
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA  GH  ++ +LL  GA ++  D  G
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+ +        ++NA +  G +PLH AA  G+  I+++LL 
Sbjct: 81  FTPLHLAAMTGHLEIVEVLLKYGA------DVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 YGADVNAQDK 144

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  ++ G T LH+A   GH ++V +L+ + AD++
Sbjct: 18  LLEAARAGQD---DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
               V   TPLH+A    +L IV +LL     +VNA D  G+T LH AA   H  +  +L
Sbjct: 75  -AADVYGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMA 915
           LK GA    ++ +G+T   ++
Sbjct: 133 LKYGADVNAQDKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
           +T LHLA   GH   V+ L+ +        ++NA +  G +PLH AA  G+  I+++LL 
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGA------DVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 YGADVNAQDK 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  ++ G T LH+A  +GH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
            +      TPLH+A +  +L IV +LL     +VNA D  G+T LH AA   H  +  +L
Sbjct: 75  ALD-FSGSTPLHLAAKRGHLEIVEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +N  D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+          ++NA ++ G +PLH AA+ G+  I+++LL 
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGA------DVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 NGADVNAQDK 144

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G+T LH+A   GH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
               +  +TPLH+A +  +L IV +LL     +VNA D  G T LH AA   H  +  +L
Sbjct: 75  AKDSLG-VTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK+GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 459 KLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCE-EAINLKHSQSKPT 514
           KL E AR G  D+VR ++    + N  +     PL H        E   + LK+      
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNASDHVGWTPL-HLAAYFGHLEIVEVLLKNGAD--- 72
Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
             + D  G T LH+AA  G ++VV+++L+ GAD N+ D  G +PLH AA  GH  ++ +L
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
           L  GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH AA  GH  ++ +LL +GA +N  D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA + GH   V+ L+          ++NA ++ G +PLH AA  G+  I+++LL 
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGA------DVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           HGA+   ++K
Sbjct: 135 HGADVNAQDK 144

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G+T LH+A   GH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
               +  +TPLH+A    +L +V +LL     +VNA D+ G T LH AA   H  +  +L
Sbjct: 75  ADDSLG-VTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD G++ LH+AA  G  ++V  +L  GA  N+ +  GC+PLHYAA++    + ++LL  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ +  D+   TA+H A   G+   V  L+++        + N  + +G++PLH A    
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEE 183
Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
                + L+  GA+  +ENK + TPLQ A  
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
           E + R + D+ L     + D  TALH A S GH ++V  L+     +N        +PLH
Sbjct: 21  ELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WSPLH 78
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
           IA       IV+ LL  K  +VNA +  G T LHYAA  N   +A +LL+ GA P  K+H
Sbjct: 79  IAASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
           Y  T +H A    +L +V +L
Sbjct: 138 YDATAMHRAAAKGNLKMVHIL 158

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 56/87 (64%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 582 NLTDNEGNTALHLATNNGHETCVKALI 608
           N  D  G T LHLA  NGH   VK L+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
           G +PLH AA  GH  V+ LLL +GA +N  D  G T LHLA  NGH   VK L+      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
               ++NA +  G +PLH AAR G+  +++LLL+ GA
Sbjct: 57  -AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           +G T LH+A   GH ++V+LL+   AD+N   +  + TPLH+A +N +L +V+LLL A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG- 58
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            +VNA+D  G T LH AA N H  +  LLL++GA
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           TPLH+A +N +L +V+LLL A   +VNA+D  G T LH AA N H  +  LLL++GA   
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933
            K+  G+T LH+A +   L +V++L     +
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           D  G T LH+AA  G  +VV  +L  G  D N QD  G +P+ +A    H +++ LLL  
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           G+ IN+ DNE N  LH A  +G     + L+          +++AVN  GDSPLH AAR 
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILL------AAKCDLHAVNIHGDSPLHIAARE 187
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
                + L L   ++ TL+NK   TPLQ A+
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 8/223 (3%)
Query: 713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNAC 772
           ++    +I ++ V+ G      +E ++   L    ENN ++ +K Y   +     P +A 
Sbjct: 19  AEAGHVDICHMLVQAGANIDTCSEDQRTP-LMEAAENNHLEAVK-YLIKAGALVDPKDAE 76
Query: 773 HPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
              C     K+   E     +++  +++N  +  G+T +  AT   H DLV+LL++  +D
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT 892
           INI    + +  LH A  +  + I  +LLAAK C+++A +  G++ LH AA  N  +   
Sbjct: 137 INIRDNEENIC-LHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVV 194
Query: 893 LLLKSGARPQIKNHYGQTCLHMA----QQMTSLSLVRVLTHEA 931
           L L   +   +KN  G+T L  A    Q  ++L + + L   A
Sbjct: 195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
           +++G T LH+A   GHY++V+ LL N + D+N        TP+  A +  ++ +V+LLL+
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLS 132
Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
            K  ++N +D   N  LH+AA +   ++A +LL +       N +G + LH+A +     
Sbjct: 133 -KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 923 -LVRVLTHEAPFVLK 936
            +V  L+ ++   LK
Sbjct: 192 CVVLFLSRDSDVTLK 206

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N+ D  G +PLH     GH  ++ +LL   A +N +D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T LHLA   GH   V+ L+ +        ++NA++ QG +PLH AA  G+  I+++LL 
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGA------DVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 YGADVNAQDK 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G T LH+  + GH +++ +L+ Y AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
              +    TPLH+A    +L IV +LL     +VNA DY+G T LH AA + H  +  +L
Sbjct: 75  ASDK-SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 895 LKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           LK GA    ++ +G+T   ++    +  L  +L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  GR   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +N  D+ G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            T L LA   GH   V+ L+          ++NA + +G +PLH AA +G+  I+++LL 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGA------DVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 649 HGANPTLENK 658
           +GA+   ++K
Sbjct: 135 NGADVNAQDK 144

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
           + E R +     ++N  ++ G+T LH+A   GH ++V +L+   AD+N V     +TPL 
Sbjct: 27  DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG-MTPLR 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
           +A    +L IV +LL     +VNA D  G+T LH AA+  H  +  +LLK+GA    ++ 
Sbjct: 86  LAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
           +G+T   ++    +  L  +L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           +MDD G T LH+AA  G +++V+++L+ GAD N++D+ G +PLH AAT GH  ++ +LL 
Sbjct: 42  AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
            GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           AT  G  D VR+L+   AD+N +     +TPLH+A +  +L IV +LL     +VNA+D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK-HGADVNARDI 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G T LH AA   H  +  +LL+ GA    ++ +G+T   ++    +  L  +L
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
           D G  +L  AA  G+   V +++  GAD N+ D  G +PLH AA  G   ++ +LL +GA
Sbjct: 5   DLGKKLLEAAAA-GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGY 639
            +N +D+ G T LHLA  +GH   V+ L+          ++NA +  G +PLH AA  G 
Sbjct: 64  DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA------DVNAYDRAGWTPLHLAALSGQ 117
Query: 640 TSIIQLLLDHGANPTLENKRKVT 662
             I+++LL HGA+   ++   +T
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLT 140

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A + G  D VR+L+   AD+N  T    LTPLH+A  N  L IV +LL     +VNA D 
Sbjct: 13  AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDS 70
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G T LH AA + H  +  +LLK GA     +  G T LH+A     L +V VL
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           +MDD G T LH+AA  G +++V+++L+ GAD N+ D+ G +PLH AAT GH  ++ +LL 
Sbjct: 42  AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
            GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLH 846
           + E R +     ++N  +  G T LH+A   GH ++V +L+ + AD+N  + +   TPLH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLH 85
Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           +A    +L IV +LL     +VNAQD  G TA   +  N + +LA +L K
Sbjct: 86  LAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           +MDD G T LH+AA  G +++V+++L+ GAD N+ D  G +PLH AAT GH  ++ +LL 
Sbjct: 42  AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
            GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 563 ATR-GHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
           ATR G  + + +L+ +GA +N  D+ G T LHLA   GH   V+ L+          ++N
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
           A ++ G +PLH AA  G+  I+++LL++GA+   ++K
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           AT  G  D VR+L+   AD+N +     +TPLH+A +  +L IV +LL     +VNA D 
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK-HGADVNASDS 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G T LH AA   H  +  +LL+ GA    ++ +G+T   ++    +  L  +L
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 61/95 (64%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           ++D+ G T LH+AA  G +++V+++L+ GAD N++D  G +PLH AA RGH  ++ +LL 
Sbjct: 42  ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
            GA +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  + DG T LH+A  LGH ++V +L+ Y AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
                  +TPLH+A    +L IV +LL     +VNAQD  G TA   +  N + +LA +L
Sbjct: 75  AEDNFG-ITPLHLAAIRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 895 LK 896
            K
Sbjct: 133 QK 134

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A   G  D VR+L+   AD+N +     LTPLH+A Q  +L IV +LL     +VNA+D 
Sbjct: 21  AARAGQDDEVRILMANGADVNALDE-DGLTPLHLAAQLGHLEIVEVLLKYG-ADVNAEDN 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G T LH AAI  H  +  +LLK GA    ++ +G+T   ++    +  L  +L
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 547 DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKA 606
           D N  D  G SPLH+A   G   V+ +L+  GA IN+ +   +T LHLA ++GH   V+ 
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 607 LIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN 666
           L+ +        +INAVN  G+ PLH A  WG   + + L+ +GA  ++ NK    P+  
Sbjct: 91  LLQYKA------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 144
Query: 667 A 667
           A
Sbjct: 145 A 145

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G++ LH A   G   +V +LI   A IN++ R    TPLH+A  + +  IV+
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 89
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
            LL  K  ++NA +  GN  LHYA       +A  L+ +GA   I N YG+  +  A+
Sbjct: 90  KLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 547 DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKA 606
           D N  D  G SPLH+A   G   V+ +L+  GA IN+ +   +T LHLA ++GH   V+ 
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 607 LIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN 666
           L+ +        +INAVN  G+ PLH A  WG   + + L+ +GA  ++ NK    P+  
Sbjct: 86  LLQYKA------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 139
Query: 667 A 667
           A
Sbjct: 140 A 140

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G++ LH A   G   +V +LI   A IN++ R    TPLH+A  + +  IV+
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 84
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
            LL  K  ++NA +  GN  LHYA       +A  L+ +GA   I N YG+  +  A+
Sbjct: 85  KLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           L++   N DG TALH+A +    + V+LL+   ADI+ V      +PL  A +NN+LS+V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           +LLL     NVNAQ Y G++ALH A+      L   L++SGA   +KN +  T L +A+ 
Sbjct: 167 QLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
Query: 918 MTSLSLVR 925
              + ++R
Sbjct: 226 RRVIDILR 233

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
           +PLH AA RG+ + L   L +   +N  D  G+TAL+ A + GH+  V+ L  F +    
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL--FTQP--- 129
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676
           N+ +N  N  GD+ LHAAA  GY  I+QLLL  GA   L N  K      A N   A LL
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLL 189

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 811 LHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNA 870
           LH A   G+   +R  ++ R  +N + +    T L+ AC   +  IV  L       +N 
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
           Q+  G+TALH AA   + ++  LLL  GAR  ++N   +     A      SL++
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLK 190

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
           + ++ R  T LH AA Y R+ VV+ +L+ GAD +++D  G  PLH A + GH  V  LL+
Sbjct: 38  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 97
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
             GA +N+ D                     L  F                  +PLH AA
Sbjct: 98  KHGAVVNVAD---------------------LWKF------------------TPLHEAA 118
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL 664
             G   I +LLL HGA+PT +N+   TPL
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
           VE+  +  T + +N         T LH A       +V  L+ + AD++   +   L PL
Sbjct: 23  VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPL 81
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           H AC   +  +  LL+      VN  D    T LH AA      +  LLL+ GA P  KN
Sbjct: 82  HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 906 HYGQTCLHMAQ 916
             G T L + +
Sbjct: 141 RDGNTPLDLVK 151

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 840 KQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           +Q TPLH A   N +S+V  LL     +V+A+D  G   LH A    H  +A LL+K GA
Sbjct: 43  RQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
              + + +  T LH A       + ++L
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLL 129

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
           + ++ R  T LH AA Y R+ VV+ +L+ GAD +++D  G  PLH A + GH  V  LL+
Sbjct: 40  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 99
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
             GA +N+ D                     L  F                  +PLH AA
Sbjct: 100 KHGAVVNVAD---------------------LWKF------------------TPLHEAA 120
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL 664
             G   I +LLL HGA+PT +N+   TPL
Sbjct: 121 AKGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
           VE+  +  T + +N         T LH A       +V  L+ + AD++   +   L PL
Sbjct: 25  VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPL 83
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           H AC   +  +  LL+      VN  D    T LH AA      +  LLL+ GA P  KN
Sbjct: 84  HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 906 HYGQTCLHMAQ 916
             G T L + +
Sbjct: 143 RDGNTPLDLVK 153

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 39/149 (26%)
Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
           + ++ R  T LH AA Y R+ VV+ +L+ GAD +++D  G  PLH A + GH  V  LL+
Sbjct: 36  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV 95
Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
             GA +N+ D                     L  F                  +PLH AA
Sbjct: 96  KHGAVVNVAD---------------------LWKF------------------TPLHEAA 116
Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL 664
             G   I +LLL HGA+PT +N+   TPL
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 786 VESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPL 845
           VE+  +  T + +N         T LH A       +V  L+ + AD++   +   L PL
Sbjct: 21  VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPL 79
Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           H AC   +  +  LL+      VN  D    T LH AA      +  LLL+ GA P  KN
Sbjct: 80  HNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 906 HYGQTCLHMAQ 916
             G T L + +
Sbjct: 139 RDGNTPLDLVK 149

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 840 KQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           +Q TPLH A   N +S+V  LL     +V+A+D  G   LH A    H  +A LL+K GA
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
              + + +  T LH A       + ++L
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLL 127

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D +G T LH+AA Y  +++V+++L+ GAD N+ D  G +PLH AA  GH  ++ +LL  G
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
           A +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
           AA  G  + + +L+ +GA +N  D +GNT LHLA +  H   V+ L+          ++N
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
           A +N G +PLH AA +G+  I+++LL HGA+   ++K
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A   G  D VR+L+   AD+N   R K  TPLH+A   ++L IV +LL     +VNA D 
Sbjct: 21  AARAGQDDEVRILMANGADVNANDR-KGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDN 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G+T LH AA+  H  +  +LLK GA    ++ +G+T   ++    +  L  +L
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
           RG T+LH+A++ G I  V+ +L+ G+D N +D  G +PLH A   GH  V+ LLL   A 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
           +N T  + ++ LH A  NGH   VK L+ +          NAVN  G  P+
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR------NAVNIFGLRPV 113

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
             N  G T LHIA+  G    V  L+   +D N+       TPLH AC + +L +V LLL
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG-WTPLHEACNHGHLKVVELLL 63
Query: 862 AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
             K   VN   Y+ ++ LH AA N H ++  LLL  GA     N +G
Sbjct: 64  QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 498 DDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCS 557
           D   + I+   +Q      +MD  G T LH+AA + R      +L+ GAD NSQD  G +
Sbjct: 27  DSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 86
Query: 558 PLHYAATRGHQNVLLLLLHSGAS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
           PLH A       V  +LL + A+ +N   ++G T L LA     E  V+ LI        
Sbjct: 87  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI------TA 140
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
           + +INA +N G + LH AA    T  + +LL H AN   ++ +  TPL
Sbjct: 141 DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNN 853
           D   + N  ++ G T LH A +     + ++L+  RA  N+  R+    TPL +A +   
Sbjct: 72  DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA-TNLNARMHDGTTPLILAARLAI 130
Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
             +V  L+ A   ++NA D  G TALH+AA  N+T    +LL   A    ++   +T L 
Sbjct: 131 EGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 914 MAQQMTSLSLVRVL 927
           +A +  S    + L
Sbjct: 190 LAAREGSYEASKAL 203

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 48/86 (55%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T LH AA  G  + V  +L  GAD N++   G +PLH AA  GH  ++ LLL  GA +
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 582 NLTDNEGNTALHLATNNGHETCVKAL 607
           N    +GNT  HLA  NGH   VK L
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
           G +PLH AA  GH   +  LL  GA +N    +GNT LHLA  NGH   VK L+      
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL------ 62
Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
               ++NA +  G++P H A + G+  I++LL   GA+
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
           + DG T LH A   GH + V+ L++  AD+N  ++    TPLH+A +N +  IV+LLLA 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLA- 63
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           K  +VNA+   GNT  H A  N H  +  LL   GA
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           TPLH A +N +   V+ LL+ K  +VNA+   GNT LH AA N H  +  LLL  GA   
Sbjct: 11  TPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
            ++  G T  H+A++     +V++L
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+ G T L++A  +G +++V+++L+ GAD N+ D  G +PLH AA  GH  +  +LL  G
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
           A +N  D  G TA  ++  NG+E   + L   N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
           AA  G  + + +L+ +GA +N  D  G T L+LAT +GH   V+ L+          ++N
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA------DVN 74
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
           AV+  G +PLH AA  G+  I ++LL HGA+   ++K
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +     ++N  +  G T L++AT+ GH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
            V  +   TPLH+A    +L I  +LL     +VNAQD  G TA   +  N + +LA +L
Sbjct: 75  AVDAIG-FTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 895 LK 896
            K
Sbjct: 133 QK 134

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA Y R      +LE  AD N QD  G +PLH A +   Q V  +L+ + 
Sbjct: 54  DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A+ ++   ++G T L LA     E  ++ LI  +       ++NAV++ G S LH AA  
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 167
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
                  +LL +GAN  ++N R+ TPL
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPL 194

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  +  G TALH+A +    D  + L+   AD NI   + + TPLH A   +   + ++L
Sbjct: 51  NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
                               LAA+               +VNA D  G +ALH+AA  N+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            + A +LLK+GA   ++N+  +T L +A +  S    +VL
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA Y R      +LE  AD N QD  G +PLH A +   Q V  +L+ + 
Sbjct: 55  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A+ ++   ++G T L LA     E  ++ LI  +       ++NAV++ G S LH AA  
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 168
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
                  +LL +GAN  ++N R+ TPL
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPL 195

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  +  G TALH+A      D  + L+   AD NI   + + TPLH A   +   + ++L
Sbjct: 52  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 110
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
                               LAA+               +VNA D  G +ALH+AA  N+
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 170
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            + A +LLK+GA   ++N+  +T L +A +  S    +VL
Sbjct: 171 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 210

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA Y R      +LE  AD N QD  G +PLH A +   Q V  +L+ + 
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A+ ++   ++G T L LA     E  ++ LI  +       ++NAV++ G S LH AA  
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 167
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
                  +LL +GAN  ++N R+ TPL
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPL 194

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  +  G TALH+A      D  + L+   AD NI   + + TPLH A   +   + ++L
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
                               LAA+               +VNA D  G +ALH+AA  N+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            + A +LLK+GA   ++N+  +T L +A +  S    +VL
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA+   +++V+++L+ GAD N+ D  G +PLH  A  GH  ++ +LL  G
Sbjct: 44  DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
           A +N  D  G TA  ++ +NG+E   + L   N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A   G  D VR+L+   AD+N   +V  LTPLH+A  N++L IV +LL     +VNA D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVG-LTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G T LH  A+  H  +  +LLK GA    ++ +G+T   ++    +  L  +L
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA Y R      +LE  AD N QD  G +PLH A +   Q V  +L+ + 
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A+ ++   ++G T L LA     E  ++ LI  +       ++NAV++ G S LH AA  
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 135
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
                  +LL +GAN  ++N R+ TPL
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPL 162

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  +  G TALH+A      D  + L+   AD NI   + + TPLH A   +   + ++L
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 77
Query: 861 --------------------LAAK-------------QCNVNAQDYRGNTALHYAAINNH 887
                               LAA+               +VNA D  G +ALH+AA  N+
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            + A +LLK+GA   ++N+  +T L +A +  S    +VL
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 62/139 (44%), Gaps = 39/139 (28%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D R  T LH+AA Y R+++V L+L+ GAD +++D  G  PLH A + GH  V  LLL  G
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  D                     L  F                  +PLH AA   
Sbjct: 115 ACVNAMD---------------------LWQF------------------TPLHEAASKN 135
Query: 639 YTSIIQLLLDHGANPTLEN 657
              +  LLL HGA+PTL N
Sbjct: 136 RVEVCSLLLSHGADPTLVN 154

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 51/347 (14%)
Query: 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPT 654
           A  +G+E  + AL+       LN+N +A + +  +PLH AA +    I+QLLL HGA+  
Sbjct: 31  AARSGNEEKLMALL-----TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 655 LENKRKVTPLQNA---NNLHVAKLL--NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKY 709
            ++K  + PL NA    +  V +LL  +        L+ +    E  S+           
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK----------- 134
Query: 710 LDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD 769
                 N   + ++ +  G  P  +    K     A       +L   + G         
Sbjct: 135 ------NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG--------- 179
Query: 770 NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH---YDLVRLL 826
              H L Q A+  E  +    + +  E +N     S   TALH A +  H     +  LL
Sbjct: 180 ---HSLLQAAR--EADLAKVKKTLALEIINFKQPQSH-ETALHCAVASLHPKRKQVAELL 233
Query: 827 INYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886
           +   A++N   +   +TPLH+A +  +  ++ +L       +NA D  G TALH AA+  
Sbjct: 234 LRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQTALHRAALAG 291
Query: 887 HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF 933
           H     LLL  G+ P I +  G T    A QM + ++ ++L+   P 
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQILSESTPM 334

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA+ G +++V+++L+ GAD N+    G +PLH AA   H  ++ +LL  G
Sbjct: 44  DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKAL 607
           A +N  D  G TA  ++ +NG+E   + L
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           L + A+  +D    E R +T    ++N  +  G+T LH+A  LGH ++V +L+   AD+N
Sbjct: 18  LLEAARAGQD---DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
                 + TPLH+A   ++L IV +LL     +VNAQD  G TA   +  N + +LA +L
Sbjct: 75  ATGNTGR-TPLHLAAWADHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Query: 895 LK 896
            K
Sbjct: 133 QK 134

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A   G  D VR+L    AD+N        TPLH+A    +L IV +LL     +VNA   
Sbjct: 21  AARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVNATGN 78
Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G T LH AA  +H  +  +LLK GA    ++ +G+T   ++    +  L  +L
Sbjct: 79  TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA Y R      +LE  AD   QD  G +PLH A +   Q V  +LL + 
Sbjct: 19  DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A+ ++   ++G T L LA     E  ++ LI  +       ++NAV++ G S LH AA  
Sbjct: 79  ATDLDARMHDGTTPLILAARLALEGMLEDLINSHA------DVNAVDDLGKSALHWAAAV 132
Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPL 664
                  +LL +GAN  ++N ++ TPL
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPL 159

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           + D  G + LH+AA YG     +++L  G   +++     +PLH AA+ GH N++ +LL 
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYF 610
            GA +N  D    TALH AT + H+  V+ LI +
Sbjct: 89  HGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVK-QLTPLHIACQNNNLSIVRLLLAAKQ 865
           G + LH+A   GH+    +L+  RA ++   R K   TPLH+A    + +IV +LL    
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLL--RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HG 90
Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            +VNA+D    TALH+A  +NH  +  LL+K GA    ++ + +T   ++    +  L  
Sbjct: 91  ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 926 VL 927
           +L
Sbjct: 151 IL 152

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
           T L  A + G    V+L+L+ GA    + DL   SP+H AA RGH   +  L+  G +I+
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNID 184
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG---DSPLHAAARWGY 639
              +   T L+LA  N    CVK L          L   A  NQG   DSPLHA  R   
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKL----------LESGADVNQGKGQDSPLHAVVRTAS 234
Query: 640 TSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRP 699
             +  LL+D GA+   +N     P++              V    PL    + +E  S P
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVE-------------LVPPESPLAQLFLEREGASLP 281
Query: 700 PSPP 703
              P
Sbjct: 282 KPKP 285

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 805 SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL-TPLHIACQNNNLSIVRLLLAA 863
           SD  + +H A   GH + V  LI Y  +I+   ++  L TPL++AC+N   + V+ LL +
Sbjct: 155 SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLES 212
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQ 909
              +VN Q    ++ LH         LA LL+  GA  Q KN  G+
Sbjct: 213 G-ADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGK 256

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+RGFT L  A+ +G I+ V  +LE GAD +       S L  A+T G+ +++ LLL   
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             IN+ D  G T L  A    H  CV+AL+          ++    + G +P+  A   G
Sbjct: 93  VDINIYDWNGGTPLLYAVRGNHVKCVEALL------ARGADLTTEADSGYTPMDLAVALG 146
Query: 639 YTSIIQLLLDH 649
           Y  + Q++ +H
Sbjct: 147 YRKVQQVIENH 157

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           +N  +  G+T L  A++ G  + VR L+ + AD +I+ + ++ + L +A       IV L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVGL 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           LL  +  ++N  D+ G T L YA   NH      LL  GA    +   G T + +A
Sbjct: 88  LLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+RGFT L  A+ +G I+ V  +LE GAD +       S L  A+T G+ +++ LLL   
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             IN+ D  G T L  A +  H  CV+AL+          ++    + G +P+  A   G
Sbjct: 93  VDINIYDWNGGTPLLYAVHGNHVKCVEALL------ARGADLTTEADSGYTPMDLAVALG 146
Query: 639 YTSIIQLLLDH 649
           Y  + Q++ +H
Sbjct: 147 YRKVQQVIENH 157

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           +N  +  G+T L  A++ G  + VR L+ + AD +I+ + ++ + L +A       IV L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVGL 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           LL  +  ++N  D+ G T L YA   NH      LL  GA    +   G T + +A
Sbjct: 88  LLE-RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T   +AA+ G +K++ L L  GAD N  D  G +    AA  G    L  L   GA++
Sbjct: 92  GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 582 NLT-----DNE-----GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
           NL      D E     G TAL  A   GH   +K L+     + +  ++NA +N G + L
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNACDNMGRNAL 206
Query: 632 -HA---AARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
            HA   +      +I  LLLDHGA+  +  +R  TPL
Sbjct: 207 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 43/286 (15%)
Query: 619 NINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN 677
           N+N    +G  +PLH A +     I++LLL HGA+P L  K   TP   A      KLL 
Sbjct: 50  NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLK 109
Query: 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEI 737
            ++ K                              +DVNE +         +      ++
Sbjct: 110 LFLSKG-----------------------------ADVNECDFYGFTAF--MEAAVYGKV 138
Query: 738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDEC 797
           K ++ L+    N  ++         ++E++       L   A+     VE     + +  
Sbjct: 139 KALKFLYKRGANVNLRRKTK----EDQERLRKGGATALMDAAEKGH--VEVLKILLDEMG 192
Query: 798 LNINICNSDGYTAL-HIATSLGHYD---LVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
            ++N C++ G  AL H   S    D   +  LL+++ AD+N+    +  TPL +A +  +
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKH 251
Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           L +V+ LL  +   +N  D  G TAL  A       +A LL K GA
Sbjct: 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---------LTPLHIAC 849
           ++N C+  G+TA   A   G    ++ L    A++N+  + K+          T L  A 
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKN 905
           +  ++ ++++LL     +VNA D  G  AL +A +++  +    +  LLL  GA   ++ 
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 236
Query: 906 HYGQTCLHMAQQMTSLSLV-RVLTHE 930
             G+T L +A +   L LV R+L  E
Sbjct: 237 ERGKTPLILAVEKKHLGLVQRLLEQE 262

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T   +AA+ G +K++ L L  GAD N  D  G +    AA  G    L  L   GA++
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 582 NL-----TDNE-----GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
           NL      D E     G TAL  A   GH   +K L+     + +  ++NA +N G + L
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNACDNMGRNAL 186
Query: 632 -HA---AARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
            HA   +      +I  LLLDHGA+  +  +R  TPL
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---------LTPLHIAC 849
           ++N C+  G+TA   A   G    ++ L    A++N+  + K+          T L  A 
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKN 905
           +  ++ ++++LL     +VNA D  G  AL +A +++  +    +  LLL  GA   ++ 
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216
Query: 906 HYGQTCLHMAQQMTSLSLV-RVLTHE 930
             G+T L +A +   L LV R+L  E
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQE 242

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  L G  ++   +L  GA+ + +D  G + +H AA  G  + L  LL + A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ DNEGN  LHLA   GH   V+ L+          N+   N++GD+    A  +G   
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
           ++ L+  +GA
Sbjct: 152 VVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N ++ +  G+  +H A   G  D ++ L+  +AD+NI      L PLH+A +  +L +V 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+     NV  ++++G+TA   A +     + +L+  +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  L G  ++   +L  GA+ + +D  G + +H AA  G  + L  LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ DNEGN  LHLA   GH   V+ L+          N+   N++GD+    A  +G   
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
           ++ L+  +GA
Sbjct: 152 VVSLMQANGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N ++ +  G+  +H A   G  D ++ L+ ++AD+NI      L PLH+A +  +L +V 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+     NV  ++++G+TA   A +     + +L+  +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
           T L  A + G    V+L+L+ GA    + DL   SP+H AA RGH   +  L+  G +I+
Sbjct: 71  TPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNID 128
Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG---DSPLHAAARWGY 639
              +   T L+LA  N    CVK L          L   A  NQG   DSPLHA AR   
Sbjct: 129 HKISHLGTPLYLACENQQRACVKKL----------LESGADVNQGKGQDSPLHAVARTAS 178
Query: 640 TSIIQLLLDHGANPTLENKRKVTPLQ 665
             +  LL+D GA+   +N     P++
Sbjct: 179 EELACLLMDFGADTQAKNAEGKRPVE 204

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 805 SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL-TPLHIACQNNNLSIVRLLLAA 863
           SD  + +H A   GH + V  LI Y  +I+   ++  L TPL++AC+N   + V+ LL +
Sbjct: 99  SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLES 156
Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
              +VN Q    ++ LH  A      LA LL+  GA  Q KN  G+  + +    + L+ 
Sbjct: 157 G-ADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 214
Query: 924 VRVLTHEAP 932
           +  L  E P
Sbjct: 215 L-FLEREGP 222

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 481 KKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDL 540
           ++ D E++ L H   + ++  + +    S+     Q   D   T LH A   G + +V  
Sbjct: 36  RQPDKENVTLLH-WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 541 VLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH 600
           +++ GAD +  D  GCS +H AA  GH +++  L+  G  +++ D  G T L  A    H
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 601 ETCVKALIYFNEQEVLNLNINAVNNQGD-----SPLHAAARWGYTSIIQLLLDHGANPTL 655
                 L+         L  N   N GD     + LH A   G T++I LLL+ GAN   
Sbjct: 155 SVDPTRLL---------LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Query: 656 ENKRKVTPL 664
           +N +  + L
Sbjct: 206 QNIKGESAL 214

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIAC-QNNNLSIVRL 859
           ++ + +G + +H+A   GH  +V  LI    D++++ +   +TPL  A  + +++   RL
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRL 161
Query: 860 LLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LL     +VN  D Y  NTALH+A +  +T + +LLL++GA    +N  G++ L +A+Q 
Sbjct: 162 LLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 919 TSLSLV 924
            ++ ++
Sbjct: 221 KNVWMI 226

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  L G  ++   +L  GA+ + +D  G + +H AA  G  + L  LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ DNEGN  LHLA   GH   V+ L+          N+   N++GD+    A  +G   
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
           ++ L+  +GA
Sbjct: 152 VVSLMQANGA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N ++ +  G+  +H A   G  D ++ L+ ++AD+NI      L PLH+A +  +L +V 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+     NV  ++++G+TA   A +     + +L+  +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  L G  ++   +L  GA+ + +D  G + +H AA  G  + L  LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ DNEGN  LHLA   GH   V+ L+          N+   N++GD+    A  +G   
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
           ++ L+  +GA
Sbjct: 152 VVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N ++ +  G+  +H A   G  D ++ L+ ++AD+NI      L PLH+A +  +L +V 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+     NV  ++++G+TA   A +     + +L+  +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 23/194 (11%)
Query: 495 CSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC 554
           CS  D EE + L    +     ++D  G T LH A +   + +V  ++E GA+ N  D  
Sbjct: 48  CSSGDTEEVLRLLERGADINYANVD--GLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN-----------NGHETC 603
           G  PLH AA+ G+ ++   L+  GA +   ++EG+T L +A             N     
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 604 VKALIYFNEQEVLN-----LNINAVNN-----QGDSPLHAAARWGYTSIIQLLLDHGANP 653
           ++A     E+ +L      LN   +N+      G + LH AA  GYT +++LL+    + 
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 654 TLENKRKVTPLQNA 667
            +++    TPL  A
Sbjct: 226 NIKDYDGWTPLHAA 239

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
           A + G    +L LL  GA IN  + +G TALH A  + +   VK L+          NIN
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG------ANIN 100
Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
             +N+G  PLHAAA  GY  I + L+  GA+    N    TPL
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIAC--------- 849
           NIN  +++G+  LH A S G+ D+   LI+  A +  V      TPL IA          
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQ 156
Query: 850 -----QNNNLSIVR------LLLAAKQC--NVNAQDYR----GNTALHYAAINNHTNLAT 892
                Q  ++   R      +L  A+Q   + +  D R    G TALH AA   +T +  
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 893 LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT 928
           LL+++     IK++ G T LH A         R+L 
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  L G  ++   +L  GA+ + +D  G + +H AA  G  + L  LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ DNEGN  LHLA   GH   V+ L+          N+   N++GD+    A  +G   
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNE 151
Query: 642 IIQLLLDHGA 651
           ++ L+  +GA
Sbjct: 152 VVSLMQANGA 161

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N ++ +  G   +H A   G  D ++ L+ ++AD+NI      L PLH+A +  +L +V 
Sbjct: 62  NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLHLAAKEGHLRVVE 120
Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+     NV  ++++G+TA   A +     + +L+  +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  ++G   +   +L+ GA  N QD  G SP+H AA  G  + L +L+  GA +
Sbjct: 42  GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ D  G   +HLA   GH   V  L           +++  + +G +PL  A + G   
Sbjct: 101 NVPDGTGALPIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLTPLELALQRGAQD 153
Query: 642 IIQLLLDHGANP 653
           ++ +L  H   P
Sbjct: 154 LVDILQGHMVAP 165

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           IN  + +G+T L  A + G   +V  L+   AD  ++ + ++ + L +AC      IV++
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKM 87
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
           LL     +VN  D+ G T L YA   NH     +LL+SGA P I+   G   + +A  + 
Sbjct: 88  LLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Query: 920 SLSLVRVL 927
             S+ +V+
Sbjct: 147 YRSVQQVI 154

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           IN  + +G+T L  A + G   +V  L+   AD  ++ + ++ + L +AC      IV++
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKM 103
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
           LL     +VN  D+ G T L YA   NH     +LL+SGA P I+   G   + +A  + 
Sbjct: 104 LLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Query: 920 SLSLVRVL 927
             S+ +V+
Sbjct: 163 YRSVQQVI 170

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  ++G   +   +L+ GA  N QD  G SP+H AA  G  + L +L+  GA +
Sbjct: 36  GKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+ D  G   +HLA   GH   V  L           +++  + +G +PL  A + G   
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLTPLELALQRGAQD 147
Query: 642 IIQLLLDH 649
           ++ +L  H
Sbjct: 148 LVDILQGH 155

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           IN  + +G+T L  A + G   +V  L+   AD  ++ + ++ + L +AC      IV++
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKM 85
Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
           LL     +VN  D+ G T L YA   NH     +LL+SGA P I+   G   + +A  + 
Sbjct: 86  LLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Query: 920 SLSLVRVL 927
             S+ +V+
Sbjct: 145 YRSVQQVI 152

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  ++G   V   +L+ GA  N QD  G SP+H AA  G  + L +L+  GA +
Sbjct: 44  GKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D+ G+  +HLA   GH + V  L           +++  +  G +PL  A + G  +
Sbjct: 103 NALDSTGSLPIHLAIREGHSSVVSFL-------APESDLHHRDASGLTPLELARQRGAQN 155
Query: 642 IIQLLLDHGANP 653
           ++ +L  H   P
Sbjct: 156 LMDILQGHMMIP 167

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T L V  ++G   V   +L+ GA  N QD  G SP+H AA  G  + L +L+  GA +
Sbjct: 42  GKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D+ G+  +HLA   GH + V  L           +++  +  G +PL  A + G  +
Sbjct: 101 NALDSTGSLPIHLAIREGHSSVVSFL-------APESDLHHRDASGLTPLELARQRGAQN 153
Query: 642 IIQLLLDHGANP 653
           ++ +L  H   P
Sbjct: 154 LMDILQGHMMIP 165

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD  ++D  G +PLH AA  GH  V+ LLL +GA +N  D  G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 589 NTALHLATNNGHETCVKAL 607
            TA  ++ +NG+E   + L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A   G  D VR+L+   AD+    +    TPLH+A +N +L +V+LLL A   +VNAQD 
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAG-ADVNAQDK 70
Query: 874 RGNTALHYAAINNHTNLATLL 894
            G TA   +  N + +LA +L
Sbjct: 71  FGKTAFDISIDNGNEDLAEIL 91

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +N  D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 589 NTALHLATNNGHETCVKAL 607
            TA  ++ +NG+E   + L
Sbjct: 69  KTAFDISIDNGNEDLAEIL 87

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 118/314 (37%), Gaps = 73/314 (23%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNE-QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
           +G+TALHLA  + HE  +  L+ F+   E L+L     N+ G + LH AA  G  S ++ 
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQTALHLAAILGEASTVEK 63
Query: 646 LLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPT 705
           L   GA   +  +   T       LH+A  + A+      L           RP  P   
Sbjct: 64  LYAAGAGVLVAERGGHTA------LHLACRVRAHTCACVLLQ---------PRPSHPRDA 108
Query: 706 QDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEE 765
            D YL  S     + S+       +P                                  
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPN--------------------------------- 135
Query: 766 KVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL 825
             P+N                E E R   D  L +   N DG+T LH+A      ++VRL
Sbjct: 136 --PEN----------------EEEPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 826 LINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
           L +  AD+N        TPLH+A +    S++ LLL A   +  A+ Y G T L  A + 
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR 235
Query: 886 NHTNLATLLLKSGA 899
            +  LA LL   GA
Sbjct: 236 PNPILARLLRAHGA 249

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 118/314 (37%), Gaps = 73/314 (23%)
Query: 587 EGNTALHLATNNGHETCVKALIYFNE-QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
           +G+TALHLA  + HE  +  L+ F+   E L+L     N+ G + LH AA  G  S ++ 
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQTALHLAAILGEASTVEK 63
Query: 646 LLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPT 705
           L   GA   +  +   T       LH+A  + A+      L           RP  P   
Sbjct: 64  LYAAGAGVLVAERGGHTA------LHLACRVRAHTCACVLLQ---------PRPSHPRDA 108
Query: 706 QDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEE 765
            D YL  S     + S+       +P                                  
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPN--------------------------------- 135
Query: 766 KVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL 825
             P+N                E E R   D  L +   N DG+T LH+A      ++VRL
Sbjct: 136 --PEN----------------EEEPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 826 LINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
           L +  AD+N        TPLH+A +    S++ LLL A   +  A+ Y G T L  A + 
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR 235
Query: 886 NHTNLATLLLKSGA 899
            +  LA LL   GA
Sbjct: 236 PNPILARLLRAHGA 249

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQLTPLHIACQNNNLSIVRLLL 861
           + DG   LH + S   +++   L++   ++N+         TP HIAC   NL +V+ L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 862 AAK-QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
               + ++N    +G T LH A       ++  L+++GA  +IK+ + Q  LH A  + S
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 921 LSLVRVL 927
           L L+ +L
Sbjct: 153 LKLIELL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQLTPLHIACQNNNLSIVRLLL 861
           + DG   LH + S   +++   L++   ++N+         TP HIAC   NL +V+ L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 862 AAK-QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
               + ++N    +G T LH A       ++  L+++GA  +IK+ + Q  LH A  + S
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 921 LSLVRVL 927
           L L+ +L
Sbjct: 153 LKLIELL 159

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINI--VTRVKQLTPLHIACQNNNLSIVRLLL 861
           + DG   LH + S   +++   L++   ++N+         TP HIAC   NL +V+ L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 862 AAK-QCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
               + ++N    +G T LH A       ++  L+++GA  +IK+ + Q  LH A  + S
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152
Query: 921 LSLVRVL 927
           L L+ +L
Sbjct: 153 LKLIELL 159

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
           AA  G+   V +++  GAD  ++D  G +PLH AA  GH  V+ LLL +GA +   D  G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 589 NTALHLATNNGHETCVKAL 607
            TA  ++ +NG+E   + L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
           A   G  D VR+L+   AD+    +    TPLH+A +N +L +V+LLL A   +V AQD 
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDK 88
Query: 874 RGNTALHYAAINNHTNLATLL 894
            G TA   +  N + +LA +L
Sbjct: 89  FGKTAFDISIDNGNEDLAEIL 109

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL-H 576
           +D  G T L++A     I++   +++ GAD N Q+    SP  YA  +G   +L  +L H
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA- 635
           +   +N  +  G  AL  A   GH   VK L+    ++     I+  N+ G + L  A  
Sbjct: 95  ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-----IDFQNDFGYTALIEAVG 149
Query: 636 -RWG---YTSIIQLLLDHGANPTLENKRKVTPLQNANN---LHVAKLLNAY 679
            R G   Y  I++LL+++GA+ ++++    T +  AN      ++K+L  Y
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T L  A    R+ + + +L  G++ N++D  G +PL ++   G+  +   LL  G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A++N  + EG T L +A+  G    VK L+       L  +I+A +  G +   +A  +G
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLE------LGADISARDLTGLTAEASARIFG 178
Query: 639 YTSIIQLL 646
              +I++ 
Sbjct: 179 RQEVIKIF 186

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           T L  A +NN L I   LL+ K  NVN +D+ G T L ++ I  ++ ++  LL+ GA   
Sbjct: 70  TALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
            +N  G+T L +A +     +V+ L
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKL 153

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAA 563
           IN K SQ+          G T L +A  +GR+ VV  +L   AD N QD  G + L  A 
Sbjct: 175 INAKASQA----------GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC 224
Query: 564 TRGHQNVL-LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIY 609
             GH+ +  LLL      I+LTD +G+TAL +A + G ++ + +++Y
Sbjct: 225 EHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG-QSEIASMLY 270

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 799 NINICNSD-GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           NIN   S  G TAL +A S G  D+V+ L+   AD+N V      T L  AC++ +  I 
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEHGHKEIA 232
Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
            LLLA   C+++  D  G+TAL  A     + +A++L
Sbjct: 233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 516 QSMDDRGFTVLHVAALYG-RIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVL 571
           Q + + G + LH+A ++  +   ++++ ++  D    N Q+    +PLH A       + 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 572 LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
             LL +G    L D  GNT LHLA   G    V  L        L+  + A N  G + L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 632 HAAARWGYTSIIQLLLDHGAN 652
           H A+  GY  I++LL+  GA+
Sbjct: 122 HLASIHGYLGIVELLVSLGAD 142

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850
           R V  +   +N  N+   T LH+A      ++   L+    D  +    +  TPLH+AC+
Sbjct: 29  RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACE 87
Query: 851 NNNLSIVRLLLAAKQCN-------VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
              L+ V +L   + C        + A +Y G+T LH A+I+ +  +  LL+  GA    
Sbjct: 88  QGCLASVGVL--TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 904 KNH-YGQTCLHMAQQMTSLSLVRVL 927
           +    G+T LH+A  + +  LV +L
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLL 170

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 521 RGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
           +G T LH AA      +V  LV E G++ + QD  G +P+  AA  G   V+  L+  GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 580 SINLTDNEGNTALHLATNNGHETCV 604
           S+   D   +TA  LA  N H   V
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIV 362

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAATRGHQNVLLLLLHSGAS 580
           G T LH+A+++G + +V+L++ LGAD N+Q+ C G + LH A    + +++ LLL  GA 
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 581 INLTDNEGNTALHL 594
           +N    +G +   L
Sbjct: 174 VNRVTYQGYSPYQL 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 44/96 (45%)
Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
           +PLH A       +   LL +G    L D  GNT LHLA   G    V  L        L
Sbjct: 44  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
           +  + A N  G + LH A+  GY  I++LL+  GA+
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 139

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 791 RPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ 850
           R V  +   +N  N+   T LH+A      ++   L+    D  +    +  TPLH+AC+
Sbjct: 26  RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACE 84
Query: 851 NNNLSIVRLLLAAKQCN-------VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
              L+ V +L   + C        + A +Y G+T LH A+I+ +  +  LL+  GA    
Sbjct: 85  QGCLASVGVL--TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 142
Query: 904 KNHY-GQTCLHMAQQMTSLSLVRVL 927
           +    G+T LH+A  + +  LV +L
Sbjct: 143 QEPCNGRTALHLAVDLQNPDLVSLL 167

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD     +HVAA  G+   V  ++E G     Q+  GC+ LH A   G  +    L   G
Sbjct: 17  DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYF---------------NEQEVLNLNINAV 623
              +L    G   +HLA        V AL+                 +E+EV  +  +  
Sbjct: 77  EVHSLW--HGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 624 NNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNA 667
           + +G + LH     G  Y   I++L+  GA+PT ++K   TPL  A
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRA 180

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 827 INYRADINIVTRVKQ-LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
           + + AD+N V   +   TPL  A   N+L     LL     NVN  D  G   LH+A I 
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATIL 278
Query: 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            HT LA L LK GA    ++  G+  L +A +  +  +V +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 827 INYRADINIVTRVKQ-LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
           + + AD+N V   +   TPL  A   N+L     LL     NVN  D  G   LH+A I 
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATIL 278
Query: 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            HT LA L LK GA    ++  G+  L +A +  +  +V +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 827 INYRADINIVTRVK-QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
           + + AD+N V   +   TPL  A   N+L     LL     NVN  D  G   LH+A I 
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATIL 278
Query: 886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            HT LA L LK GA    ++  G+  L +A +  +  +V +L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 31/64 (48%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
           G D N     G  PLHYAA  G   +L  LL  GA IN  D    T L  A   GH +CV
Sbjct: 30  GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89
Query: 605 KALI 608
           K L+
Sbjct: 90  KLLL 93

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +D G T LH A   G  ++V  +++ G + N+ D  G +PLH AA+  +  V   L+ SG
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 579 ASI 581
           A++
Sbjct: 127 AAV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           +L ++EG TALH A   GH   VK L+ F       +N+NA ++ G +PLH AA      
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFG------VNVNAADSDGWTPLHCAASCNNVQ 117
Query: 642 IIQLLLDHGA 651
           + + L++ GA
Sbjct: 118 VCKFLVESGA 127

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 810 ALHIATSL-GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
           AL + +SL G +DLV+ +I Y  D   +   + +T LH A    +  IV+ L+     NV
Sbjct: 39  ALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNV 96
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           NA D  G T LH AA  N+  +   L++SGA
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +D G T LH A   G  ++V  +++ G + N+ D  G +PLH AA+  +  V   L+ SG
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 579 ASI 581
           A++
Sbjct: 127 AAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           +L ++EG TALH A   GH   VK L+ F       +N+NA ++ G +PLH AA      
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFG------VNVNAADSDGWTPLHCAASCNNVQ 117
Query: 642 IIQLLLDHGA 651
           + + L++ GA
Sbjct: 118 VCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 810 ALHIATSL-GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
           AL + +SL G +DLV+ +I Y  D   +   + +T LH A    +  IV+ L+     NV
Sbjct: 39  ALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNV 96
Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           NA D  G T LH AA  N+  +   L++SGA
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 31/64 (48%)
Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
           G D N     G  PLHYAA  G   +L  LL  GA IN  D    T L  A   GH +CV
Sbjct: 25  GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 84
Query: 605 KALI 608
           K L+
Sbjct: 85  KLLL 88

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 501 EEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLH 560
           ++A+   +  S+P     ++ G T LH A       +VD ++  GA+ NS D  G +PLH
Sbjct: 38  QQAVKEMNDPSQP-----NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLH 92
Query: 561 YAATRGHQNVLLLLLHSGASINLTD-NEGNTAL 592
            AA+     + + L+  GA+I  T  ++G TA 
Sbjct: 93  CAASCNDTVICMALVQHGAAIFATTLSDGATAF 125

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADI 833
           PL   AK  E+ V++ S+ +  E   ++   + G TALHIA    + +   +L+    ++
Sbjct: 6   PLLLAAK--ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 834 NIVTRVKQL----TPLHIACQNNNLSIVRLLLAAKQCNVNAQD-------------YRGN 876
                  +L    T LHIA  N N+++VR LLA +  +V+A+              Y G 
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGE 122
Query: 877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHM 914
             L +AA      +  LL++ GA  + ++  G T LH+
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA--- 899
           +PL +A + N++  +  LL  + C V+ +   G TALH AA+ ++   A +L+++     
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 900 -RPQIKNHY-GQTCLHMAQQMTSLSLVRVL 927
             P     Y GQT LH+A    +++LVR L
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRAL 94

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLL 575
           ++D+ G T L   A  G  K V L+ E GAD + +D+  G + LH AA      V+  L+
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 576 HSGASINLTDNEGNTALHLA 595
             GA I + D  G TAL LA
Sbjct: 132 ELGADIEVEDERGLTALELA 151

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLL 575
           ++D+ G T L   A  G  K V L+ E GAD + +D+  G + LH AA      V+  L+
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 576 HSGASINLTDNEGNTALHLA 595
             GA I + D  G TAL LA
Sbjct: 131 ELGADIEVEDERGLTALELA 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	936
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-49
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-44
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-40
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-44
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-36
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-41
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-42
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-34
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-37
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-42
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-41
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-41
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-41
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-40
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-40
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-40
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-36
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-40
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-35
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-39
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-35
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-34
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-39
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-37
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-32
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-37
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-38
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-38
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-34
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-32
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-34
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-32
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-34
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-32
2rfa_A	232	Transient receptor potential cation channel subfa	5e-32
2rfa_A	232	Transient receptor potential cation channel subfa	4e-31
2rfa_A	232	Transient receptor potential cation channel subfa	2e-29
2rfa_A	232	Transient receptor potential cation channel subfa	2e-29
2rfa_A	232	Transient receptor potential cation channel subfa	3e-27
2rfa_A	232	Transient receptor potential cation channel subfa	2e-25
2rfa_A	232	Transient receptor potential cation channel subfa	6e-22
2rfa_A	232	Transient receptor potential cation channel subfa	6e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-30
2etb_A	256	Transient receptor potential cation channel subfam	6e-29
2etb_A	256	Transient receptor potential cation channel subfam	6e-25
2etb_A	256	Transient receptor potential cation channel subfam	1e-21
2etb_A	256	Transient receptor potential cation channel subfam	6e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-30
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	3e-24
2pnn_A	273	Transient receptor potential cation channel subfa	3e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-19
2pnn_A	273	Transient receptor potential cation channel subfa	2e-19
2pnn_A	273	Transient receptor potential cation channel subfa	3e-19
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	9e-09
2efe_A	267	Similarity to vacuolar protein sorting-associated	1e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-27
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	2e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-17
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-17
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  173 bits (442), Expect = 8e-49
 Identities = 61/316 (19%), Positives = 97/316 (30%), Gaps = 68/316 (21%)

Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL---ENKRKVTPLQNA---NNLHVA 673
              V   GD+ LH A    +   +  LL   A       +N    T L  A         
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 674 K-LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRP- 731
           + L  A                                    V  A       R G    
Sbjct: 62  EKLYAAGA---------------------------------GVLVAE------RGGHTAL 82

Query: 732 -----RNITEIKKVEQLFALIEN--NEIKLIKSYFGLSNEEKVPDNACHPLCQCAK--CK 782
                        V     L++   +  +     +   +++  PD +  P    ++   +
Sbjct: 83  HLACRVRAHTCACV-----LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137

Query: 783 EDVVES-ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ 841
            +     E   +      +   N DG+T LH+A      ++VRLL +  AD+N       
Sbjct: 138 NEEEPRDEDWRL-----QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192

Query: 842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP 901
            TPLH+A +    S++ LLL A   +  A+ Y G T L  A +  +  LA LL   GA  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 902 QIKNHYGQTCLHMAQQ 917
                   +    +  
Sbjct: 252 PEDGGDKLSPCSSSGS 267

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  137 bits (347), Expect = 3e-36
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 14/172 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVLLLLL 575
            + G T LH+A ++     +D +L   A     + Q+  G + LH AA  G  + +  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLNINAVNNQGDSP- 630
            +GA + + +  G+TALHLA      TC   L+                 + +   D+  
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 631 ---LHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
                 +             D       EN    TPL  A    +  + +LL
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  134 bits (341), Expect = 2e-35
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 10/165 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D         +      +      +      +++  G +PLH A       ++ LL  +G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 579 ASINLTD-NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A +N  +   G T LHLA      + ++ L+   +      +  A    G +PL +A   
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLL---KA---GADPTARMYGGRTPLGSALLR 235

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAY 679
               + +LL  HGA    +   K++P  ++   ++       + Y
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  132 bits (334), Expect = 2e-34
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHS 577
           +  G T LHVA ++   ++V L+ + GAD N  +  CG +PLH A      +VL LLL +
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA        G T L  A    +    + L                     SP  ++   
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAH------GAPEPEDGGDKLSPCSSSGSD 268

Query: 638 GYTSIIQLLLDHG 650
             +       ++ 
Sbjct: 269 SDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  131 bits (331), Expect = 5e-34
 Identities = 41/170 (24%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +D G T LH+AA+ G    V+ +   GA     +  G + LH A          +LL   
Sbjct: 42  NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 579 ASINLTDNEGNTALHLATN--NGHETCVKALIYFNEQEVLNL------NINAVNNQGDSP 630
            S     ++              H           E E           + A N  G +P
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 631 LHAAARWGYTSIIQLLLDHGANP-TLENKRKVTPLQNA---NNLHVAKLL 676
           LH A       +++LL D GA+    E     TPL  A       V +LL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (301), Expect = 5e-30
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINI------------VTRVKQLTPLH 846
            + +    G+TALH+A  +  +    +L+  R                  T      P  
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK-N 905
           +  Q N  +         +  + A++Y G+T LH A I+    +  LL  +GA       
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
             G+T LH+A +  + S++ +L
Sbjct: 190 TCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (287), Expect = 4e-28
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
            + +      +    + +     +       ++R  +         TPLH+A  + +  +
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEM 173

Query: 857 VRLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           VRLL  A   ++N  +   G T LH A      ++  LLLK+GA P  + + G+T L  A
Sbjct: 174 VRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

Query: 916 QQMTSLSLVRVL 927
               +  L R+L
Sbjct: 233 LLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (279), Expect = 4e-27
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +++ N  G TALH+A  LG    V  L    A + +  R    T LH+AC+    +   
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCAC 95

Query: 859 LLLAAKQCNVNAQDYRGNT--------------ALHYAAINNHTNLATLLLKSGARPQIK 904
           +LL  +  +                        A   +  N              + + +
Sbjct: 96  VLLQPR-PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 905 NHYGQTCLHMAQQMTSLSLVRVL 927
           N+ G T LH+A       +VR+L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (278), Expect = 6e-27
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 12/136 (8%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGA---SINLTDNEGNTALHLATNNGHETCVK 605
                 G + LH A    H+  L  LL   A    ++L ++ G TALHLA   G  + V+
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 606 ALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL- 664
            L            +      G + LH A R    +   +LL    +   +         
Sbjct: 63  KLY---AAGA---GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 665 --QNANNLHVAKLLNA 678
                +  H    +++
Sbjct: 117 QDCTPDTSHAPAAVDS 132

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (277), Expect = 8e-27
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 799 NINICNSD-GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           ++N      G T LH+A       ++ LL+   AD        + TPL  A    N  + 
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRPNPILA 241

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           RLL A              +    +  ++ ++      +
Sbjct: 242 RLLRAHG-APEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 97.6 bits (244), Expect = 2e-22
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 843 TPLHIACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
           T LH+A  + +   +  LL   A    ++ Q+  G TALH AAI    +    L  +GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
             +    G T LH+A ++ + +   VL
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.8 bits (229), Expect = 2e-20
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
                 +G+TALHLA  + HE  +  L+        +  ++  N+ G + LH AA  G  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLL---GFSAGHEYLDLQNDLGQTALHLAAILGEA 58

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           S ++ L   GA   +  +   T L  A        A +L
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 7e-11
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 868 VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ---IKNHYGQTCLHMAQQMTSLSLV 924
                  G+TALH A I+ H      LL   A  +   ++N  GQT LH+A  +   S V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 925 RVL 927
             L
Sbjct: 62  EKL 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 4/31 (12%), Positives = 6/31 (19%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY 829
                  D  +    + S    D       Y
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  157 bits (399), Expect = 3e-44
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 10/162 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
                  +      G    V L L+    D N  D  G SPLH+A   G   V+ +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA IN+ +   +T LHLA ++GH   V+ L+   + +    +INAVN  G+ PLH A  W
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLL---QYKA---DINAVNEHGNVPLHYACFW 115

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G   + + L+ +GA  ++ NK    P+  A       + +  
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  146 bits (371), Expect = 1e-40
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 18/155 (11%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD GF+ LH A   GR  VV++++  GA  N  +    +PLH AA+ GH++++  LL   
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A IN  +  GN  LH A   G +   + L+           ++  N  G+ P+  A    
Sbjct: 96  ADINAVNEHGNVPLHYACFWGQDQVAEDLV---ANGA---LVSICNKYGEMPVDKAKAPL 149

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673
              + +     G N             N       
Sbjct: 150 RELLRERAEKMGQNL------------NRIPYKDT 172

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  143 bits (364), Expect = 1e-39
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G++ LH A   G   +V +LI   A IN++ R    TPLH+A  + +  IV+
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGHRDIVQ 89

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL  K  ++NA +  GN  LHYA       +A  L+ +GA   I N YG+  +  A+  
Sbjct: 90  KLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP 148

Query: 919 TSLSLVRVL 927
               L    
Sbjct: 149 LRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  122 bits (308), Expect = 5e-32
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRA-DINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
           + +    +      G+   VRL ++    D+N        +PLH AC+    ++V +L+ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIM 60

Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
                +N  +   +T LH AA + H ++   LL+  A     N +G   LH A       
Sbjct: 61  RG-ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 923 LVRVL 927
           +   L
Sbjct: 120 VAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (301), Expect = 3e-31
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            IN+ N    T LH+A S GH D+V+ L+ Y+ADIN V       PLH AC      +  
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQDQVAE 122

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+A     V+  +  G   +  A       L     K G 
Sbjct: 123 DLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.6 bits (195), Expect = 6e-17
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           ++ G   LH A  +G+ +V + ++  GA  +  +  G  P+  A     + +       G
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 579 ASINLTDNEGNTALHLATNNGH 600
            ++N                G 
Sbjct: 162 QNLNRIP------YKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.5 bits (148), Expect = 1e-10
 Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 7/53 (13%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQN 851
            ++ICN  G   +  A +     L         ++N         P       
Sbjct: 130 LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR-------IPYKDTFWK 175

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  156 bits (397), Expect = 3e-44
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
                +H  A  G +  +   +E     N  D  G +PL +AA  G   V+  LL +GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
             L      +AL LA + G+   VK L+   +  V   ++N  +  G +PL  A    + 
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLL---DCGV---DVNEYDWNGGTPLLYAVHGNHV 115

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             +++LL+ GA+PT+E       +  A       V +++
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  148 bits (377), Expect = 2e-41
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+ GFT L  AA +G+I VV+ +L+ GAD         S L  A ++G+ +++ +LL  G
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             +N  D  G T L  A +  H  CVK L+   E      +     + G + +  A   G
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLL---ESGA---DPTIETDSGYNSMDLAVALG 146

Query: 639 YTSIIQLLLDHGANPTLENK 658
           Y S+ Q++  H        K
Sbjct: 147 YRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  140 bits (356), Expect = 1e-38
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            IN  + +G+T L  A + G   +V  L+   AD  ++ +  + + L +AC      IV+
Sbjct: 28  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVK 86

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LL     +VN  D+ G T L YA   NH     +LL+SGA P I+   G   + +A  +
Sbjct: 87  MLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145

Query: 919 TSLSLVRVL 927
              S+ +V+
Sbjct: 146 GYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (315), Expect = 3e-33
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
               ++H   + G    +   I     IN     +  TPL  A  +  +++V  LL    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNG- 59

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            +         +AL  A    +T++  +LL  G      +  G T L  A     +  V+
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 926 VL 927
           +L
Sbjct: 120 ML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (300), Expect = 3e-31
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +  +      +AL +A S G+ D+V++L++   D+N        TPL  A   N++  V+
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG-TPLLYAVHGNHVKCVK 119

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           +LL +   +   +   G  ++  A    + ++  ++     +     
Sbjct: 120 MLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 76.7 bits (190), Expect = 2e-16
 Identities = 17/69 (24%), Positives = 29/69 (42%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T L  A     +K V ++LE GAD   +   G + +  A   G+++V  ++    
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

Query: 579 ASINLTDNE 587
             +     E
Sbjct: 159 LKLLQNIKE 167

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  163 bits (415), Expect = 1e-43
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
             +GFT LHVAA YG+++V +L+LE  A  N+    G +PLH A    + +++ LLL  G
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
            S +     G T LH+A         ++L+   +      + NA + QG +PLH AA+ G
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLL---QYGG---SANAESVQGVTPLHLAAQEG 256

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +  ++ LLL   AN  L NK  +TPL       ++ VA +L
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  161 bits (411), Expect = 5e-43
 Identities = 54/161 (33%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                T LH AA  G   +V L+LE  A+ N     G +PLH AA  GH   +L LL   
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           AS      +G T LH+A   G     + L+   E++    + NA    G +PLH A    
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDA---HPNAAGKNGLTPLHVAVHHN 190

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
              I++LLL  G +P        TPL  A   N + VA+ L
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  160 bits (408), Expect = 1e-42
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G+T LH+AA   +++V   +L+ G   N++ + G +PLH AA  GH  ++ LLL   
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ NL +  G T LHL    GH      LI   +  V    ++A    G +PLH A+ +G
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLI---KHGV---MVDATTRMGYTPLHVASHYG 322

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
              +++ LL H A+   + K   +PL  A    +  +  LL
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (406), Expect = 2e-42
 Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
            + G T LHVA+  G + +V  +L+ GA  N  ++   +PLH AA  GH  V   LL + 
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N    +  T LH A   GH   VK L+   E      N N     G +PLH AAR G
Sbjct: 71  AKVNAKAKDDQTPLHCAARIGHTNMVKLLL---ENNA---NPNLATTAGHTPLHIAAREG 124

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +   +  LL+  A+     K+  TPL  A     + VA+LL
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (378), Expect = 1e-38
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +  G T LH+ A  G + V D++++ G   ++    G +PLH A+  G+  ++  LL   
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N     G + LH A   GH   V  L+   +      + N V++ G +PL  A R G
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLL---KNGA---SPNEVSSDGTTPLAIAKRLG 388

Query: 639 YTSIIQLL---LDHGANPTLENKRKVTPLQNANNL 670
           Y S+  +L    D  +   + +K +++  +  + +
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  147 bits (374), Expect = 3e-38
 Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N N+ N  G T LH+    GH  +  +LI +   ++  TR+   TPLH+A    N+ +V+
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYGNIKLVK 328

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL   Q +VNA+   G + LH AA   HT++ TLLLK+GA P   +  G T L +A+++
Sbjct: 329 FLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387

Query: 919 TSLSLVRVL 927
             +S+  VL
Sbjct: 388 GYISVTDVL 396

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  145 bits (369), Expect = 2e-37
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + +    +GYT LHIA      ++ R L+ Y    N  +  + +TPLH+A Q  +  +V 
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVA 262

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LLL+ KQ N N  +  G T LH  A   H  +A +L+K G         G T LH+A   
Sbjct: 263 LLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321

Query: 919 TSLSLVRVL 927
            ++ LV+ L
Sbjct: 322 GNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (359), Expect = 3e-36
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +       G T LH+A+ +GH  +V+ L+   A  N+   VK  TPLH+A +  +  + +
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAK 64

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL  K   VNA+     T LH AA   HTN+  LLL++ A P +    G T LH+A + 
Sbjct: 65  YLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 919 TSLSLVRVL 927
             +  V  L
Sbjct: 124 GHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (358), Expect = 4e-36
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +       G+T LH+A   G   +  LL+   A  N   +   LTPLH+A  +NNL IV+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVK 196

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LLL  +  + ++  + G T LH AA  N   +A  LL+ G     ++  G T LH+A Q 
Sbjct: 197 LLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255

Query: 919 TSLSLVRVL 927
               +V +L
Sbjct: 256 GHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (349), Expect = 5e-35
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N    D  T LH A  +GH ++V+LL+   A+ N+ T     TPLHIA +  ++  V 
Sbjct: 72  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVL 130

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL  K+ +      +G T LH AA      +A LLL+  A P      G T LH+A   
Sbjct: 131 ALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189

Query: 919 TSLSLVRVL 927
            +L +V++L
Sbjct: 190 NNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (344), Expect = 2e-34
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
           G         G +PLH A+  GH  ++  LL  GAS N+++ +  T LH+A   GH    
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
           K L+   + +     +NA      +PLH AAR G+T++++LLL++ ANP L      TPL
Sbjct: 64  KYLL---QNKA---KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117

Query: 665 QNA---NNLHVAKLL 676
             A    ++     L
Sbjct: 118 HIAAREGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (327), Expect = 4e-32
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            ++     GYT LH+A+  G+  LV+ L+ ++AD+N  T++   +PLH A Q  +  IV 
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY-SPLHQAAQQGHTDIVT 361

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL---LKSGARPQIKNHYGQTCLHMA 915
           LLL     + N     G T L  A    + ++  +L       +   + + +  +     
Sbjct: 362 LLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

Query: 916 QQMTSLS 922
            ++  +S
Sbjct: 421 DEILDVS 427

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  128 bits (325), Expect = 7e-32
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G+T LHVA+ YG IK+V  +L+  AD N++   G SPLH AA +GH +++ LLL +G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           AS N   ++G T L +A   G+ +    L    ++      +   +    S         
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS---FVLVSDKHRMSFPE------ 418

Query: 639 YTSIIQLLLDHGANP 653
               +  +LD   + 
Sbjct: 419 ---TVDEILDVSEDE 430

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 9e-13
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            +       G T LH A+   H  +   LL+ GA P + N   +T LHMA +     + +
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 926 VL 927
            L
Sbjct: 65  YL 66

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  157 bits (399), Expect = 2e-43
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                + LH AA  G + +  ++++ GA+ ++      +PL  AA   H   +  L+ +G
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A ++  D EG+T LHLA   GH   V+ L+         +++N  ++ G +P+  A  + 
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKGHYEVVQYLL-----SNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +  +++LLL  G++  + +  +   L  A     + +A++L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  154 bits (393), Expect = 8e-43
 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           D  G T LH+AA  G  +VV  +L  G  D N QD  G +P+ +A    H +++ LLL  
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           G+ IN+ DNE N  LH A  +G     + L+     +    +++AVN  GDSPLH AAR 
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILL---AAKC---DLHAVNIHGDSPLHIAARE 187

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAY 679
                + L L   ++ TL+NK   TPLQ A   + +  A  ++  
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  141 bits (357), Expect = 6e-38
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           NI+ C+ D  T L  A    H + V+ LI   A ++     +  T LH+A +  +  +V+
Sbjct: 36  NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQ 94

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL+  Q +VN QD  G T + +A    H +L  LLL  G+   I+++    CLH A   
Sbjct: 95  YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154

Query: 919 TSLSLVRVL 927
             + +  +L
Sbjct: 155 GCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  137 bits (347), Expect = 1e-36
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G+T +  AT   H DLV+LL++  +DINI    ++   LH A  +  + I  
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAE 161

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LLAAK C+++A +  G++ LH AA  N  +   L L   +   +KN  G+T L  A   
Sbjct: 162 ILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220

Query: 919 TSLSLVRVL 927
           + +     +
Sbjct: 221 SQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  134 bits (341), Expect = 1e-35
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD G+T +  A  Y  + +V L+L  G+D N +D      LH+AA  G  ++  +LL + 
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             ++  +  G++ LH+A       CV   +    ++    ++   N +G++PL  A+   
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFL---SRDS---DVTLKNKEGETPLQCASLNS 221

Query: 639 YTSIIQLLLDHGAN 652
                  +     +
Sbjct: 222 QVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (331), Expect = 2e-34
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 3/130 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N  + + +  + LH A   GH D+  +L+   A+I+  +   Q TPL  A +NN+L  V+
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVK 61

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQ 917
            L+ A    V+ +D  G+T LH AA   H  +   LL +G      ++  G T +  A +
Sbjct: 62  YLIKAG-ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 918 MTSLSLVRVL 927
              + LV++L
Sbjct: 121 YKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  117 bits (296), Expect = 8e-30
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 546 ADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVK 605
            +   +     SPLH AA  GH ++  +L+ +GA+I+    +  T L  A  N H   VK
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 606 ALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA-NPTLENKRKVTPL 664
            LI   +       ++  + +G + LH AA+ G+  ++Q LL +G  +   ++    TP+
Sbjct: 62  YLI---KAGA---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

Query: 665 QNA---NNLHVAKLL 676
             A    ++ + KLL
Sbjct: 116 IWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (292), Expect = 3e-29
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +INI +++    LH A   G  D+  +L+  + D++ V      +PLHIA + N    V 
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCVV 194

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           L L+    +V  ++  G T L  A++N+    A  + K+  
Sbjct: 195 LFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 94.8 bits (237), Expect = 6e-22
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
            +  +  + K+ +PLH A +  ++ I  +L+ A   N++       T L  AA NNH   
Sbjct: 2   MNFKMEHQNKR-SPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
              L+K+GA    K+  G TCLH+A +     +V+ L
Sbjct: 60  VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.4 bits (166), Expect = 1e-12
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVA 673
           ++N    +    SPLHAAA  G+  I  +L+  GAN    ++ + TPL  A   N+L   
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 674 KLL 676
           K L
Sbjct: 61  KYL 63

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.0 bits (113), Expect = 1e-05
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
           ++ + N +G T L  A+          +     D
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  157 bits (399), Expect = 6e-43
 Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 13/172 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                T L  A + G    V+L+L+ GA    +     SP+H AA RGH   +  L+  G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
            +I+   +   T L+LA  N    CVK L+   E      ++N      DSPLHA  R  
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKLL---ESGA---DVNQGKG-QDSPLHAVVRTA 233

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA-NNLHVAKLL----NAYVHKPKP 685
              +  LL+D GA+   +N     P++       +A+L      A + KPKP
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASLPKPKP 285

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  154 bits (392), Expect = 5e-42
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 17/176 (9%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
            ++ +H AA++G    +  ++  G   N       SPLH A   GH + + +LL  GA +
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N    + +T L  A  +G   CV  L+   +      ++   ++   SP+H AAR G+  
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLL---QHGA---SVQPESD-LASPIHEAARRGHVE 171

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL---NAYVHKPK----PLY 687
            +  L+ +G N   +     TPL  A         K L    A V++ K    PL+
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLH 227

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  152 bits (386), Expect = 3e-41
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                + LH A L G +  V ++L+ GA  N       +PL  A   G  + + LLL  G
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           AS+   +++  + +H A   GH  CV +LI          NI+   +   +PL+ A    
Sbjct: 149 ASVQ-PESDLASPIHEAARRGHVECVNSLI---AYGG---NIDHKISHLGTPLYLACENQ 201

Query: 639 YTSIIQLLLDHGANPTLENKRK--VTPLQNA---NNLHVAKLL 676
             + ++ LL+ GA+    N+ K   +PL       +  +A LL
Sbjct: 202 QRACVKKLLESGADV---NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (336), Expect = 1e-34
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N   +D +T L  A   G +D V LL+ + A +   +     +P+H A +  ++  V 
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES--DLASPIHEAARRGHVECVN 174

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            L+A    N++ +     T L+ A  N        LL+SGA    +     + LH   + 
Sbjct: 175 SLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRT 232

Query: 919 TSLSLVRVL 927
            S  L  +L
Sbjct: 233 ASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (333), Expect = 3e-34
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +NI  +D  + LH A   GH   V++L+ + A +N VT     TPL  AC + +   V 
Sbjct: 84  AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN 142

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LLL     +V  +     + +H AA   H      L+  G     K  +  T L++A + 
Sbjct: 143 LLLQHG-ASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 200

Query: 919 TSLSLVRVL 927
              + V+ L
Sbjct: 201 QQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (332), Expect = 5e-34
 Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G          G       +  L        +   SP+H AA  GHQ  L  L+  G ++
Sbjct: 33  GSKPAGPRDFPG-------IRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N+   +  + LH A   GH +CVK L+   +       +N V     +PL  A   G   
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILL---KHGA---QVNGVTADWHTPLFNACVSGSWD 139

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            + LLL HGA+   E+    +P+  A    ++     L
Sbjct: 140 CVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (322), Expect = 1e-32
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++    SD  + +H A   GH + V  LI Y  +I+        TPL++AC+N   + V+
Sbjct: 150 SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVK 207

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
            LL +   +VN      ++ LH         LA LL+  GA  Q KN  G+  + + 
Sbjct: 208 KLLESG-ADVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  123 bits (312), Expect = 2e-31
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 21/157 (13%)

Query: 528 VAALYGRIKVVDLVLELGADTNSQD-----LCGCSPLHYAATRGHQNVLLLLLHSGASIN 582
           + + +        ++  G+   S D     + G  P       G       LL +    +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 583 LTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI 642
                  + +H A  +GH+  ++ LI    Q      +N +     SPLH A   G+ S 
Sbjct: 56  --AVSDWSPMHEAAIHGHQLSLRNLI---SQGW---AVNIITADHVSPLHEACLGGHLSC 107

Query: 643 IQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +++LL HGA          TPL NA    +     LL
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (274), Expect = 2e-26
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           NI+   S   T L++A        V+ L+   AD+N      Q +PLH   +  +  +  
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQDSPLHAVVRTASEELAC 239

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           LL+     +  A++  G   +      +       L + GA
Sbjct: 240 LLMDFG-ADTQAKNAEGKRPVELVPPESPLA-QLFLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (270), Expect = 7e-26
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++   +      +  +   G  D   + +       +   V   +P+H A  + +   +R
Sbjct: 20  HMASMD-GKQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAVSDWSPMHEAAIHGHQLSLR 76

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            L++ +   VN       + LH A +  H +   +LLK GA+         T L  A   
Sbjct: 77  NLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135

Query: 919 TSLSLVRVL 927
            S   V +L
Sbjct: 136 GSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 90.2 bits (225), Expect = 6e-20
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 813 IATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD 872
           + +S  H+     L+   + +  +    +   +  +          + L +     +A  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD--GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS 58

Query: 873 YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
               + +H AAI+ H      L+  G    I      + LH A     LS V++L
Sbjct: 59  --DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
                 + LH        ++  L+++ GADT +++  G  P+           L L    
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE- 276

Query: 578 GASINLT 584
           GAS+   
Sbjct: 277 GASLPKP 283

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  152 bits (387), Expect = 8e-43
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADT-NSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
               +H  A  G +  +   L  G +  N  D  G +PL +A+  G    +  LL  GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
            ++   E  +AL LA+  G+   V  L+   E++V   +IN  +  G +PL  A R  + 
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLL---ERDV---DINIYDWNGGTPLLYAVRGNHV 115

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             ++ LL  GA+ T E     TP+  A       V +++
Sbjct: 116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  152 bits (386), Expect = 1e-42
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+RGFT L  A+ +G I+ V  +LE GAD +       S L  A+T G+ +++ LLL   
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             IN+ D  G T L  A    H  CV+AL+    +     ++    + G +P+  A   G
Sbjct: 93  VDINIYDWNGGTPLLYAVRGNHVKCVEALL---ARGA---DLTTEADSGYTPMDLAVALG 146

Query: 639 YTSIIQLLLDHGANPTLENKRKVTP 663
           Y  + Q++ +H       N     P
Sbjct: 147 YRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  138 bits (350), Expect = 8e-38
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           +N  +  G+T L  A++ G  + VR L+ + AD +I+ + ++ + L +A       IV L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVGL 87

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
           LL     ++N  D+ G T L YA   NH      LL  GA    +   G T + +A  + 
Sbjct: 88  LLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

Query: 920 SLSLVRVL 927
              + +V+
Sbjct: 147 YRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  128 bits (324), Expect = 2e-34
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + +I   +  +AL +A++ G+ D+V LL+    DINI       TPL  A + N++  V 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNHVKCVE 119

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT 910
            LLA    ++  +   G T +  A    +  +  ++     +    N     
Sbjct: 120 ALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  119 bits (301), Expect = 3e-31
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 807 GYTALHIATSLGHYDLVRLLINYRAD-INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
              ++H   + G  D ++  +    + +N     +  TPL  A     +  VR LL    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWG- 59

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            + +       +AL  A+   +T++  LLL+      I +  G T L  A +   +  V 
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 926 VL 927
            L
Sbjct: 120 AL 121

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  153 bits (389), Expect = 2e-42
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLHS 577
            +     LH AA  G +  +   L+     N  D  G + L++A   GH++++ +L    
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
              +N  +  G+TALH A   G+   V+ L+    +       +  N +       A   
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL---AKGA---RTDLRNIEKKLAFDMATNA 183

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
              S+++      A  TL N       ++++
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  152 bits (387), Expect = 3e-42
 Identities = 49/164 (29%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
            D   T        GR  ++            Q     +PLH AA RG+ + L   L + 
Sbjct: 42  TDMSDTNWWKGTSKGRTGLIP-----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             +N  D  G+TAL+ A + GH+  V+ L         N+ +N  N  GD+ LHAAA  G
Sbjct: 97  VGVNGLDKAGSTALYWACHGGHKDIVEMLF-----TQPNIELNQQNKLGDTALHAAAWKG 151

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAY 679
           Y  I+QLLL  GA   L N  K      A       + K     
Sbjct: 152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  147 bits (373), Expect = 2e-40
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
               +          LH A   G+   +R  ++ R  +N + +    T L+ AC   +  
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKD 120

Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           IV +L       +N Q+  G+TALH AA   + ++  LLL  GAR  ++N   +    MA
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA 180

Query: 916 QQMTSLSLVRVL 927
                 SL++  
Sbjct: 181 TNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  126 bits (319), Expect = 4e-33
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 15/162 (9%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G   +  A      +  D +     D         +      ++G        L   
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPS 63

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             +       +  LH A   G+ + ++  +   +  V    +N ++  G + L+ A   G
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECL---DNRV---GVNGLDKAGSTALYWACHGG 117

Query: 639 YTSIIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +  I+++L          +NK   T L  A       + +LL
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  125 bits (316), Expect = 9e-33
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLI-NYRADINIVTRVKQLTPLHIACQNNNLSIV 857
            +N  +  G TAL+ A   GH D+V +L      ++N   ++   T LH A       IV
Sbjct: 98  GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD-TALHAAAWKGYADIV 156

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           +LLLA      + ++     A   A      +L      + A   + N         +  
Sbjct: 157 QLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

Query: 918 MTSL 921
               
Sbjct: 216 EHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (299), Expect = 2e-30
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +I        T     TS G   L+          +I        PLH A +  NLS +R
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI------DNPLHEAAKRGNLSWLR 90

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCLHMAQQ 917
             L  +   VN  D  G+TAL++A    H ++  +L  +       +N  G T LH A  
Sbjct: 91  ECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149

Query: 918 MTSLSLVRVL 927
                +V++L
Sbjct: 150 KGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  117 bits (296), Expect = 6e-30
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           D  G T L+ A   G   +V+ L  +   + N Q+  G + LH AA +G+ +++ LLL  
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA  +L + E   A  +ATN    + +K        +         N +       +   
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQ---GTDA---VRTLSNAEDYLDDEDSDLE 216

Query: 638 G 638
            
Sbjct: 217 H 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  109 bits (275), Expect = 3e-27
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 14/131 (10%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
                 G   +  A           L      I    +  +T     T+ G    + +  
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS-- 63

Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
                      +       D+PLH AA+ G  S ++  LD+       +K   T L  A 
Sbjct: 64  ---------NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC 114

Query: 668 --NNLHVAKLL 676
              +  + ++L
Sbjct: 115 HGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  105 bits (265), Expect = 7e-26
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 7/122 (5%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
            G   +  A           L     DI  +T     T            ++        
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLIPSN----- 64

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
             V  Q    +  LH AA   + +     L +       +  G T L+ A       +V 
Sbjct: 65  -YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123

Query: 926 VL 927
           +L
Sbjct: 124 ML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 19/82 (23%), Positives = 32/82 (39%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +  G T LH AA  G   +V L+L  GA T+ +++        A      ++L     + 
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

Query: 579 ASINLTDNEGNTALHLATNNGH 600
           A   L++ E       +    H
Sbjct: 197 AVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.1 bits (219), Expect = 9e-20
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N  N  G TALH A   G+ D+V+LL+   A  ++    K+     +A      S+++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-LAFDMATNAACASLLK 190

Query: 859 LLLAAKQCNVNAQDYRG---------NTALHY 881
                        +                H+
Sbjct: 191 KKQGTD-AVRTLSNAEDYLDDEDSDLEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 5/56 (8%), Positives = 7/56 (12%)

Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLV 924
                 G   +  A           L               T            L+
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  152 bits (388), Expect = 4e-42
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
            +DD     +  A  YG  +    ++E G D    D    + LH+AA     +++   + 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 577 SGASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
            GA ++    +  +T LH AT  GH + V  L+   +      + + ++ +G S +H AA
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM---KYGA---DPSLIDGEGCSCIHLAA 117

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPL----QNANNLHVAKLL 676
           ++G+TSI+  L+  G +  + ++  +TPL       +++   +LL
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  150 bits (382), Expect = 3e-41
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
            D   T LH A   G + +V  +++ GAD +  D  GCS +H AA  GH +++  L+  G
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132

Query: 579 ASINLTDNEGNTALHLATNNGHET-CVKALIYFNEQEVLNLNINAVNNQ-GDSPLHAAAR 636
             +++ D  G T L  A    H     + L+        N+++N  +    ++ LH A  
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL------TFNVSVNLGDKYHKNTALHWAVL 186

Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            G T++I LLL+ GAN   +N +  + L  A    N+ +   L
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  138 bits (350), Expect = 5e-37
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ-NVLLLLLHS 577
           D  G + +H+AA +G   +V  ++  G D +  D  G +PL +AA R H  +   LLL  
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 578 GASINLTDN-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
             S+NL D    NTALH A   G+ T +  L+   E      N++A N +G+S L  A +
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLL---EAGA---NVDAQNIKGESALDLAKQ 219

Query: 637 WGYTSIIQLLLDHGANPTLEN 657
                +I  L +       +N
Sbjct: 220 RKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  135 bits (342), Expect = 7e-36
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++   +      +  AT  G Y+  R L+    D+    + + +T LH A  NN + +V+
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVK 59

Query: 859 LLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
             ++ K   V+       +T LH+A    H ++   L+K GA P + +  G +C+H+A Q
Sbjct: 60  YYIS-KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 918 MTSLSLVRVL 927
               S+V  L
Sbjct: 119 FGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  133 bits (338), Expect = 2e-35
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++   + +  T LH A      DLV+  I+  A ++ +      TPLH A +  +LS+V 
Sbjct: 34  DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
            L+     + +  D  G + +H AA   HT++   L+  G    + +  G T L  A
Sbjct: 94  QLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  131 bits (331), Expect = 2e-34
 Identities = 39/131 (29%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN-LSIV 857
           + ++ + +G + +H+A   GH  +V  LI    D++++ +   +TPL  A    + +   
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPT 159

Query: 858 RLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
           RLLL     +VN  D Y  NTALH+A +  +T + +LLL++GA    +N  G++ L +A+
Sbjct: 160 RLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

Query: 917 QMTSLSLVRVL 927
           Q  ++ ++  L
Sbjct: 219 QRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  121 bits (305), Expect = 6e-31
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 799 NINICNSDGYTALHIATSLGHY-DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           ++++ + +G T L  A    H  D  RLL+ +   +N+  +  + T LH A    N +++
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
            LLL A   NV+AQ+ +G +AL  A    +  +   L ++       N
Sbjct: 194 SLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  120 bits (303), Expect = 1e-30
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
              D      +  A   G       L+ +G  +   D E  T LH A  N     VK  I
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 609 YFNEQEVLNLNINAV-NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
               +      ++ +  +   +PLH A R G+ S++  L+ +GA+P+L +    + +  A
Sbjct: 63  ---SKGA---IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

Query: 668 ---NNLHVAKLL 676
               +  +   L
Sbjct: 117 AQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.0 bits (222), Expect = 6e-20
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
           +   D+     +  AT  G     + L+   E      ++   + +  + LH AA     
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELV---EAGY---DVRQPDKENVTLLHWAAINNRI 55

Query: 641 SIIQLLLDHGANP-TLENKRKVTPLQNA---NNLHVAKLL 676
            +++  +  GA    L      TPL  A    +L +   L
Sbjct: 56  DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.9 bits (162), Expect = 5e-12
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKL 675
           ++  +++     +  A ++G     + L++ G +    +K  VT L  A   N + + K 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 676 L 676
            
Sbjct: 61  Y 61

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  152 bits (388), Expect = 5e-42
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL----GADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
           D+ G T LH+A + G +  V  ++ L    G + +  +    +PLH A      +V+ LL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA 634
           + +GAS    D  G TA HLA  +   TC++AL+         L++ A N  G + LH A
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG--TLDLEARNYDGLTALHVA 123

Query: 635 ARWGYTSIIQLLLDHGANPTLEN-KRKVTPLQNA---NNLHVAKLL 676
                   +QLLL+ GA+    + K   +PL +A   N+L + +LL
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  142 bits (362), Expect = 1e-38
 Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           L++   N DG TALH+A +    + V+LL+   ADI+ V      +PL  A +NN+LS+V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           +LLL     NVNAQ Y G++ALH A+      L   L++SGA   +KN +  T L +A+ 
Sbjct: 167 QLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225

Query: 918 MTSLSLVRVL 927
              + ++R  
Sbjct: 226 RRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  142 bits (362), Expect = 2e-38
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA----DTNSQDLCGCSPLHYAATRGHQNVLLLL 574
           D  G T  H+A  +     +  +L+  A    D  +++  G + LH A     Q  + LL
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 575 LHSGASINLTD-NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633
           L  GA I+  D   G + L  A  N   + V+ L+   +      N+NA    G S LH+
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL---QHGA---NVNAQMYSGSSALHS 189

Query: 634 AARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           A+  G   +++ L+  GA+ +L+N    TPL  A     + + +  
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  139 bits (353), Expect = 2e-37
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 7/135 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAATRGHQNVLLLLLHS 577
           +  G T LHVA      + V L+LE GAD ++ D+  G SPL +A      +++ LLL  
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA++N     G++ALH A+  G    V+ L+          + +  N   D+PL  A   
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLV---RSGA---DSSLKNCHNDTPLMVARSR 226

Query: 638 GYTSIIQLLLDHGAN 652
               I++      A+
Sbjct: 227 RVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  136 bits (346), Expect = 2e-36
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            ++I N+   T LH+A       +VRLL+   A    + R  Q T  H+AC++ + + +R
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLR 96

Query: 859 LLL---AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN-HYGQTCLHM 914
            LL   A    ++ A++Y G TALH A          LLL+ GA     +   G++ L  
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156

Query: 915 AQQMTSLSLVRVL 927
           A +  SLS+V++L
Sbjct: 157 AVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (314), Expect = 4e-32
 Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYR----ADINIVTRVKQLTPLHIACQNNNLS 855
               + DG T LHIA   G+   V  L+N       +++I     + TPLH+A      S
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPS 60

Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ----IKNHYGQTC 911
           +VRLL+ A   +  A D  G TA H A  +        LL S A        +N+ G T 
Sbjct: 61  VVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 912 LHMAQQMTSLSLVRVL 927
           LH+A        V++L
Sbjct: 120 LHVAVNTECQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (288), Expect = 1e-28
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 799 NINICNS-DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           +I+  +   G + L  A       +V+LL+ + A++N        + LH A     L +V
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLV 199

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           R L+     + + ++   +T L  A      ++        A
Sbjct: 200 RTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  109 bits (275), Expect = 5e-27
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 17/139 (12%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLL----HSGASINLTDNEGNTALHLATNNGHETCV 604
              D  G +PLH A  +G+   +  L+      G  +++ +N   T LHLA      + V
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62

Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL----ENKRK 660
           + L+          +  A++  G +  H A      + ++ LLD  A  TL     N   
Sbjct: 63  RLLV---TAGA---SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 661 VTPLQNA---NNLHVAKLL 676
           +T L  A         +LL
Sbjct: 117 LTALHVAVNTECQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL---NINAVNNQGDSPLHAAARW 637
               D +G+T LH+A   G+   V  L+      +       ++  NN   +PLH A   
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLV-----NLFQQGGRELDIYNNLRQTPLHLAVIT 56

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
              S+++LL+  GA+P   ++   T    A    +    + L
Sbjct: 57  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  151 bits (383), Expect = 6e-42
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLHS 577
           D  G T L++A     I++   +++ GAD N Q+    SP  YA  +G   +L  +L H+
Sbjct: 36  DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
              +N  +  G  AL  A   GH   VK L+     E    +I+  N+ G + L  A   
Sbjct: 96  TPDLNKHNRYGGNALIPAAEKGHIDNVKLLL-----EDGREDIDFQNDFGYTALIEAVGL 150

Query: 638 -----GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
                 Y  I++LL+++GA+ ++++    T +  A       ++K+L
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  141 bits (357), Expect = 2e-38
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 14/167 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                 +L  A      KV +++ +     +  D  G +PL+ A       +   L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A INL ++  ++    A   G    +  ++     +    ++N  N  G + L  AA  G
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYML-----KHATPDLNKHNRYGGNALIPAAEKG 117

Query: 639 YTSIIQLLLDHG-ANPTLENKRKVTPLQNA--------NNLHVAKLL 676
           +   ++LLL+ G  +   +N    T L  A            + KLL
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  129 bits (328), Expect = 2e-34
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            ++  +++G T L+IA      ++ + LI+  ADIN+       +P   A       I+ 
Sbjct: 31  QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQGRTEILA 89

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG-ARPQIKNHYGQTCLHMA 915
            +L     ++N  +  G  AL  AA   H +   LLL+ G      +N +G T L  A
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (308), Expect = 7e-32
 Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRA-DINIVTRVKQLTPLHIACQNNNLSIV 857
           +IN+ NS   +    A + G  +++  ++ +   D+N   R      L  A +  ++  V
Sbjct: 64  DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNV 122

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAI-----NNHTNLATLLLKSGARPQIKNHYGQTCL 912
           +LLL   + +++ Q+  G TAL  A         + ++  LL+++GA   IK++ G+T +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182

Query: 913 HMAQQMTSLSLVRVL 927
             A Q     + ++L
Sbjct: 183 DYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  120 bits (304), Expect = 2e-31
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
             +    L  A       +  +L +    ++ V      TPL+IA  NN++ I + L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDR 61

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQMTSLS 922
              ++N Q+   ++   YA     T +   +LK         N YG   L  A +   + 
Sbjct: 62  G-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 923 LVRVL 927
            V++L
Sbjct: 121 NVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (297), Expect = 2e-30
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF 610
           +     + L  A  R  + V  +L  +   ++  D EGNT L++A +N      KALI  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-- 59

Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA-NPTLENKRKVTPLQNA-- 667
            ++     +IN  N+  DSP   A   G T I+  +L H   +    N+     L  A  
Sbjct: 60  -DRGA---DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 668 -NNLHVAKLL 676
             ++   KLL
Sbjct: 116 KGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  116 bits (294), Expect = 7e-30
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVL-LLLLH 576
           +    +    A   GR +++  +L+    D N  +  G + L  AA +GH + + LLL  
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 577 SGASINLTDNEGNTALHLA-----TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
               I+  ++ G TAL  A      N  ++  VK L+   E      + +  +N G + +
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM---ENGA---DQSIKDNSGRTAM 182

Query: 632 HAAARWGYTSIIQLLLDH 649
             A + GYT I ++L  +
Sbjct: 183 DYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (255), Expect = 9e-25
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIAC-----QNN 852
           ++N  N  G  AL  A   GH D V+LL+   R DI+        T L  A         
Sbjct: 98  DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY-TALIEAVGLREGNQL 156

Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
              IV+LL+     + + +D  G TA+ YA    +T ++ +L +
Sbjct: 157 YQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.8 bits (141), Expect = 1e-09
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           + Y     L  A   +   +  +L  +  +    +  G T L++A     + + + L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY 829
           + +I ++ G TA+  A   G+ ++ ++L  Y
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  151 bits (385), Expect = 9e-42
 Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL----GADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
            + G + LH+A ++    +   V+       A  N Q+    +PLH A       +   L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA 634
           L +G    L D  GNT LHLA   G    V  L        L+  + A N  G + LH A
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

Query: 635 ARWGYTSIIQLLLDHGANP-TLENKRKVTPLQNA---NNLHVAKLL 676
           +  GY  I++LL+  GA+    E     T L  A    N  +  LL
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  135 bits (342), Expect = 5e-36
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N  N+   T LH+A      ++   L+    D  +       TPLH+AC+   L+ V 
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVG 95

Query: 859 LLL-----AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK-NHYGQTCL 912
           +L            + A +Y G+T LH A+I+ +  +  LL+  GA    +    G+T L
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155

Query: 913 HMAQQMTSLSLVRVL 927
           H+A  + +  LV +L
Sbjct: 156 HLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  133 bits (336), Expect = 4e-35
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 1/117 (0%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +   N +G+T LH+A+  G+  +V LL++  AD+N        T LH+A    N  +V 
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           LLL     +VN   Y+G +          T +   L +            +      
Sbjct: 169 LLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  130 bits (329), Expect = 3e-34
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 12/134 (8%)

Query: 804 NSDGYTALHIATSLGH----YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
             DG + LH+A          +++R +    A +N    ++Q TPLH+A   N   I   
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEA 63

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI------KNHYGQTCLH 913
           LL A  C+   +D+RGNT LH A          +L +S   P +       N+ G TCLH
Sbjct: 64  LLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 914 MAQQMTSLSLVRVL 927
           +A     L +V +L
Sbjct: 123 LASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  129 bits (327), Expect = 6e-34
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-----LTPLHIACQNNN 853
           +  + +  G T LH+A   G    V +L       ++ + +K       T LH+A  +  
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 854 LSIVRLLLAAKQCNVNAQD-YRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912
           L IV LL++    +VNAQ+   G TALH A    + +L +LLLK GA      + G +  
Sbjct: 130 LGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 188

Query: 913 HMAQQMTSLSLVRVL 927
            +     S  + + L
Sbjct: 189 QLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  128 bits (325), Expect = 9e-34
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 13/156 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADT------NSQDLCGCSPLHYAATRGHQNVLL 572
           D RG T LH+A   G +  V ++ +            + +  G + LH A+  G+  ++ 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 573 LLLHSGASINLTDN-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
           LL+  GA +N  +   G TALHLA +  +   V  L+   +      ++N V  QG SP 
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL---KCGA---DVNRVTYQGYSPY 188

Query: 632 HAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
                   T I Q L                     
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  110 bits (278), Expect = 2e-27
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHS 577
           +  G T LH+A+++G + +V+L++ LGAD N+Q+   G + LH A    + +++ LLL  
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA +N    +G +   L          + L        L L    +  + +         
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ------LTLENLQMLPESEDEESYDTES 227

Query: 638 GYTSI 642
            +T  
Sbjct: 228 EFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.8 bits (229), Expect = 6e-21
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 799 NINIC-NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           ++N     +G TALH+A  L + DLV LL+   AD+N VT     +P  +     +  I 
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-SPYQLTWGRPSTRIQ 200

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
           + L                    Y   +  T   
Sbjct: 201 QQLGQLT-LENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.5 bits (223), Expect = 3e-20
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 843 TPLHIACQNNN----LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
           + LH+A  +      + ++R +       +N Q+    T LH A I N   +A  LL +G
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 899 ARPQIKNHYGQTCLHMAQQMTSLSLVRVLT 928
             P++++  G T LH+A +   L+ V VLT
Sbjct: 69  CDPELRDFRGNTPLHLACEQGCLASVGVLT 98

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 870 AQDYRGNTALHYAAINNHTNLAT----LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
                G++ LH A I+    L       +    A    +N+  QT LH+A       +  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 926 VL 927
            L
Sbjct: 63  AL 64

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 622 AVNNQGDSPLHAAARWGYTS----IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAK 674
            +   GDS LH A      +    +I+ +    A    +N  + TPL  A   N   +A+
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 675 LL 676
            L
Sbjct: 63  AL 64

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  150 bits (381), Expect = 3e-41
 Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA Y R      +LE  AD N QD  G +PLH A +   Q V  +L+ + 
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 579 AS-INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A+ ++   ++G T L LA     E  ++ LI        + ++NAV++ G S LH AA  
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLI------NSHADVNAVDDLGKSALHWAAAV 135

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
                  +LL +GAN  ++N R+ TPL  A    +   AK+L
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  147 bits (375), Expect = 2e-40
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 10/162 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           D+ G T LH A       V  +++   A D +++   G +PL  AA    + +L  L++S
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
            A +N  D+ G +ALH A    +      L+   +      N +  NN+ ++PL  AAR 
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLL---KNGA---NKDMQNNREETPLFLAARE 168

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G     ++LLDH AN  + +     P   A    +  + +LL
Sbjct: 169 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  135 bits (342), Expect = 4e-36
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +++    DG T L +A  L    ++  LIN  AD+N V  + + + LH A   NN+    
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAV 142

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LL     N + Q+ R  T L  AA       A +LL   A   I +H  +    +AQ+ 
Sbjct: 143 VLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201

Query: 919 TSLSLVRVL 927
               +VR+L
Sbjct: 202 MHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  134 bits (340), Expect = 8e-36
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G T L +AA      +++ ++   AD N+ D  G S LH+AA   + +  ++LL +G
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ ++ +N   T L LA   G     K L+   +      N +  ++    P   A    
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKVLL---DHFA---NRDITDHMDRLPRDIAQERM 202

Query: 639 YTSIIQLLLDHGAN 652
           +  I++LL ++   
Sbjct: 203 HHDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (334), Expect = 4e-35
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  +  G TALH+A      D  + L+   AD NI   + + TPLH A   +   + ++L
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 77

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
           +  +  +++A+ + G T L  AA      +   L+ S A     +  G++ LH A  + +
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 921 LSLVRVL 927
           +    VL
Sbjct: 138 VDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (323), Expect = 2e-33
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 537 VVDLVLELGAD-TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
           V+   +  GA   N  D  G + LH AA     +    LL + A  N+ DN G T LH A
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

Query: 596 TNNGHETCVKALIYFNEQEVLN--LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP 653
            +   +   + LI        N   +++A  + G +PL  AAR     +++ L++  A+ 
Sbjct: 66  VSADAQGVFQILI-------RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 654 TLENKRKVTPLQNA---NNLHVAKLL 676
              +    + L  A   NN+  A +L
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  119 bits (300), Expect = 2e-30
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 2/108 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G +ALH A ++ + D   +L+   A+ ++    ++ TPL +A +  +    +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGSYETAK 175

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
           +LL     N +  D+        A    H ++  LL +       + H
Sbjct: 176 VLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  102 bits (257), Expect = 9e-25
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT 877
               ++   I   A ++  T     T LH+A + +     + LL A   + N QD  G T
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRT 60

Query: 878 ALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            LH A   +   +  +L+++ A     + H G T L +A ++    ++  L
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  147 bits (375), Expect = 7e-41
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 9/162 (5%)

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
            D    T L VA + G    +D ++E       +D+ G + L +A       +   LL  
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           G+++N  D  G T L  +   G+      L+          N+N  N +G++PL  A+++
Sbjct: 91  GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL------EHGANVNDRNLEGETPLIVASKY 144

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G + I++ LL+ GA+ +  +   +T   +A       V K+ 
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  133 bits (337), Expect = 1e-35
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 15/163 (9%)

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
            MD  G  V  +       + +D +       N +D    +PL  A   G +N +  L+ 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
           +   +   D EG+TAL  A  N      + L+    +     N+N  +  G +PL  +  
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL---SKGS---NVNTKDFSGKTPLMWSII 110

Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +GY+ +   LL+HGAN    N    TPL  A       + K L
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  127 bits (322), Expect = 1e-33
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +   + +G TAL  A       +   L++  +++N      + TPL  +       +  
Sbjct: 60  KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGYSEMSY 118

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL     NVN ++  G T L  A+    + +   LL+ GA    ++  G T    A+  
Sbjct: 119 FLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIF 177

Query: 919 TSLSLVRVL 927
               ++++ 
Sbjct: 178 GRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  126 bits (319), Expect = 2e-33
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
              N  +S   T L +A  LG  + +  L+     +         T L  A +NN L I 
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIA 84

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
             LL+    NVN +D+ G T L ++ I  ++ ++  LL+ GA    +N  G+T L +A +
Sbjct: 85  EKLLSKG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143

Query: 918 MTSLSLVRVL 927
                +V+ L
Sbjct: 144 YGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  125 bits (317), Expect = 4e-33
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T L  A    R+ + + +L  G++ N++D  G +PL ++   G+  +   LL  G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A++N  + EG T L +A+  G    VK L+   E      +I+A +  G +   +A  +G
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLL---ELGA---DISARDLTGLTAEASARIFG 178

Query: 639 YTSIIQLLLDHGA 651
              +I++  +   
Sbjct: 179 RQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (275), Expect = 2e-27
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           +  + +G     I         +  L NYR   N        TPL +AC     + +  L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNR-------TPLMVACMLGMENAIDKL 54

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
           +      +  +D  G+TAL +A  NN   +A  LL  G+    K+  G+T L  +     
Sbjct: 55  VENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

Query: 921 LSLVRVL 927
             +   L
Sbjct: 114 SEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  108 bits (273), Expect = 3e-27
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N+N  +  G T L  +   G+ ++   L+ + A++N      + TPL +A +     IV+
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVASKYGRSEIVK 151

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
            LL     +++A+D  G TA   A I     +  +  
Sbjct: 152 KLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 97.5 bits (244), Expect = 2e-23
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 15/131 (11%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           +  D  G         +     L  L       N  D+   T L +A   G E  +  L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
              E       +   + +G + L  A +     I + LL  G+N   ++    TPL  + 
Sbjct: 56  ---ENFD---KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109

Query: 668 --NNLHVAKLL 676
                 ++  L
Sbjct: 110 IFGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.2 bits (181), Expect = 6e-15
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N+N  N +G T L +A+  G  ++V+ L+   ADI+        T    A       +++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGRQEVIK 184

Query: 859 LLLAAK 864
           +    +
Sbjct: 185 IFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
           +I+  +  G TA   A   G  +++++    R 
Sbjct: 159 DISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  146 bits (372), Expect = 7e-41
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 9/158 (5%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
               L  AA  GR   V +++  GAD N++D  G +PLH AA  GH  ++ +LL +GA +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D+ G T L LA   GH   V+ L+   +      ++NA + +G +PLH AA +G+  
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLL---KNGA---DVNANDMEGHTPLHLAAMFGHLE 127

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           I+++LL +GA+   ++K   T    +    N  +A++L
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  131 bits (333), Expect = 1e-35
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  ++ G+T LH+A   GH ++V +L+   AD+N V      TPL +A    +L IV 
Sbjct: 39  DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVE 97

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LL     +VNA D  G+T LH AA+  H  +  +LLK+GA    ++ +G+T   ++   
Sbjct: 98  VLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156

Query: 919 TSLSLVRVL 927
            +  L  +L
Sbjct: 157 GNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  126 bits (320), Expect = 1e-33
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G+T LH+AA  G +++V+++L+ GAD N+ D  G +PL  AA  GH  ++ +LL +G
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  D EG+T LHLA   GH   V+ L+   +      ++NA +  G +    +   G
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLL---KNGA---DVNAQDKFGKTAFDISIDNG 157

Query: 639 YTSIIQLLLDH 649
              + ++L   
Sbjct: 158 NEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  125 bits (318), Expect = 1e-33
 Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 3/130 (2%)

Query: 799 NINICN-SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           + +  + SD    L  A   G  D VR+L+   AD+N        TPLH+A  N +L IV
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIV 63

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
            +LL     +VNA D+ G T L  AA+  H  +  +LLK+GA     +  G T LH+A  
Sbjct: 64  EVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 918 MTSLSLVRVL 927
              L +V VL
Sbjct: 123 FGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  117 bits (297), Expect = 1e-30
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%)

Query: 545 GADTN-SQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC 603
           G+  +          L  AA  G  + + +L+ +GA +N  D  G T LHLA  NGH   
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663
           V+ L+   +      ++NAV++ G +PL  AA +G+  I+++LL +GA+    +    TP
Sbjct: 63  VEVLL---KNGA---DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116

Query: 664 LQNA---NNLHVAKLL 676
           L  A    +L + ++L
Sbjct: 117 LHLAAMFGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  112 bits (282), Expect = 1e-28
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G T L +A   GH ++V +L+   AD+N        TPLH+A    +L IV 
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFGHLEIVE 130

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           +LL     +VNAQD  G TA   +  N + +LA +L K
Sbjct: 131 VLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.8 bits (232), Expect = 5e-22
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
           +  +          L  A +      VR+L+A    +VNA+D  G T LH AA N H  +
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
             +LLK+GA     +H G T L +A     L +V VL
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  146 bits (371), Expect = 9e-41
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           M +     L  AA  G ++ +  +L+   + N+Q+  G + L      G+  +   LL  
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA+ +L D  G   +H A   G    ++ L+   E +    ++N  +N+G+ PLH AA+ 
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLL---EFQA---DVNIEDNEGNLPLHLAAKE 113

Query: 638 GYTSIIQLLLDHGA-NPTLENKRKVTPLQNA---NNLHVAKLL 676
           G+  +++ L+ H A N    N +  T    A       V  L+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  132 bits (335), Expect = 7e-36
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +  G T L V    G  ++   +L  GA+ + +D  G + +H AA  G  + L  LL   
Sbjct: 35  NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N+ DNEGN  LHLA   GH   V+ L+     +    N+   N++GD+    A  +G
Sbjct: 94  ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-----KHTASNVGHRNHKGDTACDLARLYG 148

Query: 639 YTSIIQLLLDHGA 651
              ++ L+  +GA
Sbjct: 149 RNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  127 bits (322), Expect = 4e-34
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N+N  N  G TAL +   LG+ ++ R L+   A+ ++  R      +H A +   L  ++
Sbjct: 30  NVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGF-AVIHDAARAGFLDTLQ 87

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR-PQIKNHYGQTCLHMAQQ 917
            LL   Q +VN +D  GN  LH AA   H  +   L+K  A     +NH G T   +A+ 
Sbjct: 88  TLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146

Query: 918 MTSLSLVRVL 927
                +V ++
Sbjct: 147 YGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  120 bits (305), Expect = 7e-32
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N ++ +  G+  +H A   G  D ++ L+ ++AD+NI        PLH+A +  +L +V 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVVE 120

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            L+     NV  ++++G+TA   A +     + +L+  +GA
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (296), Expect = 1e-30
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
                L  A + G  + +  L+    ++N      + T L +  +  N  I R LL    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQVM-KLGNPEIARRLLLRG- 60

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            N + +D  G   +H AA     +    LL+  A   I+++ G   LH+A +   L +V 
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 926 VL 927
            L
Sbjct: 121 FL 122

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  147 bits (375), Expect = 2e-40
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 522 GFTVLHVAALYGRIK-VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
               LH A +      V +L+    +    +D  G  PLH++ +     +   LL    +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 581 INL---TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           +NL    D+ G T  H+A + G+   VK+L        L  ++N + NQG + LH A   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            +  + Q L+++GA+  +++K    PL  A    +L + +LL
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  144 bits (366), Expect = 3e-39
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE--LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           DD G+T  H+A   G ++VV  + +  L  D N     G + LH A  +    V   L+ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
           +GAS+ + D      LH A + G    ++ L       +    +N  + QG +PL  A  
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLC-----GLGKSAVNWQDKQGWTPLFHALA 183

Query: 637 WGYTSIIQLLLD-HGANPTLENKRKVTPLQNANNLHVAKLL 676
            G+     LL++ +GA   L + +       A N  V K  
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  139 bits (352), Expect = 2e-37
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC---GCSPLHYAATRGHQNV--LLL 573
           D  G   LH +  +   ++   +L    + N  D     G +P H A + G+  V   L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92

Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633
                  +N   N+G T LHLA         + LI   E      ++   +     PLH 
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI---ENGA---SVRIKDKFNQIPLHR 146

Query: 634 AARWGYTSIIQLLLDHGANPT-LENKRKVTPLQNA---NNLHVAKLL 676
           AA  G   +I+LL   G +    ++K+  TPL +A    +   A LL
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  137 bits (348), Expect = 7e-37
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ--LTPLHIACQNNNLSI 856
            +   + DG   LH + S   +++   L++   ++N+         TP HIAC   NL +
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87

Query: 857 VRLLLA-AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           V+ L     + ++N    +G T LH A       ++  L+++GA  +IK+ + Q  LH A
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147

Query: 916 QQMTSLSLVRVL 927
             + SL L+ +L
Sbjct: 148 ASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  134 bits (339), Expect = 1e-35
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N   + G T LH+A     +++ + LI   A + I  +  Q  PLH A    +L ++ 
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIE 157

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCLHMA 915
           LL    +  VN QD +G T L +A    H + A LL+ K GA   + ++ G     +A
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  119 bits (301), Expect = 2e-30
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 799 NINICNS---DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNNL 854
           N+N+ +     G+T  HIA S+G+ ++V+ L +     ++     Q +T LH+A      
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG-ARPQIKNHYGQTCLH 913
            + + L+     +V  +D      LH AA      L  LL   G +    ++  G T L 
Sbjct: 121 EVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

Query: 914 MAQQMTSLSLVRVL 927
            A          +L
Sbjct: 180 HALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  109 bits (276), Expect = 3e-27
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 807 GYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
               LH A     +  V+ LL +  + +    +  +  PLH +       I   LL +K 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLL-SKM 59

Query: 866 CNVNAQDYR---GNTALHYAAINNHTNLATLLLKSGARPQI--KNHYGQTCLHMAQQMTS 920
            NVN  DY    G T  H A    +  +   L     +P +    + G TCLH+A     
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119

Query: 921 LSLVRVL 927
             + + L
Sbjct: 120 FEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  101 bits (254), Expect = 2e-24
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIACQNNNLSIV 857
           ++ I +      LH A S+G   L+ LL    ++ +N   +    TPL  A    +    
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAA 190

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
            LL+       +  D +G  A   A        
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.4 bits (127), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVL-LLLLH 576
           D +G+T L  A   G       LV + GA+ +  D  G      A    ++ V    L +
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (384), Expect = 3e-40
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 22/178 (12%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD     +HVAA  G+   V  ++E G     Q+  GC+ LH A   G  +    L   G
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI---------------YFNEQEVLNLNINAV 623
              +     G   +HLA        V AL+                 +E+EV  +  +  
Sbjct: 77  EVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK 134

Query: 624 NNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           + +G + LH     G  Y  +I++L+  GA+PT ++K   TPL  A    N     L+
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  148 bits (376), Expect = 4e-39
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL-----GADTNSQDLCGCSPLHYAATRGHQNVLLL 573
           D    T L  A  +   + +DL+++          +  +  G S LH+A     ++V + 
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLN---INAVNNQ 626
            +  G  +N+ DNE    L+L+         K L+     F  Q     N   +      
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
               + AAA      ++QLL +                          V ++ 
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  142 bits (360), Expect = 4e-37
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG--HQNVLLLLLH 576
            +RG     +       +V          ++ +   G + LH+    G  +  ++ +L+ 
Sbjct: 108 KERGQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
            GAS    D    T L  A    +   +  ++        +L ++  N QG+S LH A  
Sbjct: 162 LGASPTAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAIL 220

Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             +  +    ++ G +  +E+     PL  +     + + K L
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (350), Expect = 1e-35
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 25/169 (14%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL--- 575
           + +G + LH A L     V    +E+G D N +D     PL+ +       +   LL   
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

Query: 576 ----------HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
                     H+G ++          +  A +   +  ++ L    E+      +    N
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ---EKLD---EVVRSLN 321

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK 674
            G        +    ++ ++ L   A     ++ +           V+K
Sbjct: 322 TGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARS------SAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  136 bits (345), Expect = 4e-35
 Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 798 LNINICNSDGYTALHIATSLG--HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
           +  ++ +  G TALH    LG  + +++++L+   A      +    TPL  A +  N  
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFRNRE 187

Query: 856 IVRLLLAAKQC----NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTC 911
            + L++          ++  + +GN+ LH+A + N  ++A   ++ G    ++++     
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP 247

Query: 912 LHMAQQMTSLSLVRVL 927
           L+++ +   + L + L
Sbjct: 248 LYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  127 bits (321), Expect = 7e-32
 Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 13/141 (9%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            ++  N  G + LH A  +   D+    +    D+N+    +   PL+++ +   + + +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRAAMVLLTK 261

Query: 859 LLLAAKQ------------CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
            LL                  V          +  AA  +   +  LL +         +
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 321

Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
            G       ++  + ++ R+ 
Sbjct: 322 TGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (319), Expect = 1e-31
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 13/130 (10%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINI------------VTRVKQLTPLH 846
           ++N+ +++    L+++       L + L+       I              RV  L  + 
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH 906
            A   +   +++LL   K   V      G              +  + L   A  + ++ 
Sbjct: 296 AAADPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354

Query: 907 YGQTCLHMAQ 916
                  +++
Sbjct: 355 SRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (310), Expect = 2e-30
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 10/133 (7%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           LN    + +    +H+A   G  D VR LI       I  R    T LH+AC+   +   
Sbjct: 11  LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTA 69

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           + L  +     +     G   +H A + N T+L   L++           GQ    +  +
Sbjct: 70  KYLA-SVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNE 120

Query: 918 MTSLSLVRVLTHE 930
                +  + +H 
Sbjct: 121 CDEREVNEIGSHV 133

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  109 bits (276), Expect = 4e-26
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 540 LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG 599
           +      +    D      +H AA +G  + +  L+ +G S  + +  G TALHLA   G
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 600 HETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKR 659
                K L    E        +  +  G  P+H A     T ++  L++          R
Sbjct: 65  CVDTAKYLASVGE------VHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE------R 110

Query: 660 KVTPLQNA---NNLHVAKL 675
              P       +   V ++
Sbjct: 111 GQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  106 bits (268), Expect = 5e-25
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
             ++    G   +H+A      DLV  L+    +           P  +  + +   +  
Sbjct: 78  VHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERG-------QMPESLLNECDEREVNE 128

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAI--NNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
           +         + +  +G TALH+       +  +  +L++ GA P  K+   +T L  A 
Sbjct: 129 I-------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181

Query: 917 QMTSLSLVRVL 927
           +  +   + ++
Sbjct: 182 EFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 3e-14
 Identities = 17/68 (25%), Positives = 30/68 (44%)

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
           +    + N    D      +H AA    T+    L+++G  P I+N +G T LH+A +  
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 920 SLSLVRVL 927
            +   + L
Sbjct: 65  CVDTAKYL 72

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (366), Expect = 4e-40
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 521 RGFTVLHVAALYGRIKVV-DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
           R    L  AA  G ++ V  L+       ++ +  G + L      G   + L LL  GA
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59

Query: 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGY 639
           S N+ D  G + +H A   G    +K L+   E      ++N  +  G  P+H A + G+
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLV---EHGA---DVNVPDGTGALPIHLAVQEGH 113

Query: 640 TSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           T+++  L    ++    + R +TPL+ A       +  +L
Sbjct: 114 TAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  133 bits (337), Expect = 2e-36
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +  G T L V   +G   +   +L+ GA  N QD  G SP+H AA  G  + L +L+  G
Sbjct: 33  NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N+ D  G   +HLA   GH   V  L           +++  + +G +PL  A + G
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQRG 144

Query: 639 YTSIIQLLLDH 649
              ++ +L  H
Sbjct: 145 AQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  130 bits (330), Expect = 3e-35
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + +  N  G TAL +    G   +   L+   A  N+       +P+H A +   L  ++
Sbjct: 28  HPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDTLK 85

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +L+     +VN  D  G   +H A    HT + + L  + +    ++  G T L +A Q 
Sbjct: 86  VLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQR 143

Query: 919 TSLSLVRVL 927
            +  LV +L
Sbjct: 144 GAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  117 bits (297), Expect = 7e-31
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + N+ ++ G + +H A   G  D +++L+ + AD+N+        P+H+A Q  + ++V 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LPIHLAVQEGHTAVVS 118

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
            L    + +++ +D RG T L  A      +L  +L  
Sbjct: 119 FLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (283), Expect = 5e-29
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 807 GYTALHIATSLGHYDLVR-LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
               L  A + G    VR LL       + + R  + T L +     + +I   LL    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQVMM-FGSTAIALELLKQG- 58

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            + N QD  G + +H AA     +   +L++ GA   + +  G   +H+A Q    ++V 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 926 VLTHEA 931
            L  E+
Sbjct: 119 FLAAES 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 874 RGNTALHYAAINNHTN-LATLLLKSGARPQIKNHYGQTCLHMAQ 916
           R    L  AA       +  LL +    P   N +G+T L +  
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM 44

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  144 bits (366), Expect = 5e-40
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           +      L  AA  G ++ V  +  +   +    +    +PLH+AA     +V+  LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA ++  D  G   LH A + GH    + L+   +       +N  +    +PLH AA  
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLV---KHGA---VVNVADLWKFTPLHEAAAK 118

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA--NNLHVAKLL 676
           G   I +LLL HGA+PT +N+   TPL      +  +  LL
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  131 bits (333), Expect = 1e-35
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           + R  T LH AA Y R+ VV+ +L+ GAD +++D  G  PLH A + GH  V  LL+  G
Sbjct: 39  EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N+ D    T LH A   G     K L+   +      +    N  G++PL      G
Sbjct: 99  AVVNVADLWKFTPLHEAAAKGKYEICKLLL---QHGA---DPTKKNRDGNTPLDLVKD-G 151

Query: 639 YTSIIQLLLDHGA 651
            T I  LL    A
Sbjct: 152 DTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  128 bits (325), Expect = 2e-34
 Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N         T LH A       +V  L+ + AD++   +     PLH AC   +  +  
Sbjct: 34  NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL-VPLHNACSYGHYEVAE 92

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
           LL+      VN  D    T LH AA      +  LLL+ GA P  KN  G T L + +
Sbjct: 93  LLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  118 bits (299), Expect = 5e-31
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
           NS+    L  A   G  + V+ L   +  +   +   +  TPLH A   N +S+V  LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQ 63

Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
               +V+A+D  G   LH A    H  +A LL+K GA   + + +  T LH A       
Sbjct: 64  HG-ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 923 LVRVL 927
           + ++L
Sbjct: 123 ICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  110 bits (277), Expect = 5e-28
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +++  +  G   LH A S GHY++  LL+ + A +N+    K  TPLH A       I +
Sbjct: 67  DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICK 125

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           LLL     +   ++  GNT L     +  T++  LL    A
Sbjct: 126 LLLQHG-ADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 94.4 bits (236), Expect = 1e-22
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
           A  N     +    L  A +  ++  V+ L   +  N    + R +T LH+AA  N  ++
Sbjct: 2   AMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
              LL+ GA    K+  G   LH A       +  +L
Sbjct: 58  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLD-HGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            N++ D  L  AA+ G    ++ L      N      R+ TPL  A   N + V + L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  143 bits (362), Expect = 1e-39
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
            +     L  AA  GR++ V  +LE GA+ N+ +  G  P+      G   V  LLL  G
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67

Query: 579 ASINLTDNEGNT-ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A  N  D    T  +H A   G    +  L            ++  +  G  P+  A   
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLH---RAGA---RLDVRDAWGRLPVDLAEEL 121

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
           G+  + + L          N  ++   +  
Sbjct: 122 GHRDVARYLRAAAGGTRGSNHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  124 bits (313), Expect = 5e-33
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 2/115 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N N  NS G   + +   +G   +  LL+ + A+ N         P+H A +   L  + 
Sbjct: 37  NPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
           +L  A    ++ +D  G   +  A    H ++A  L  +    +  NH       
Sbjct: 96  VLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  122 bits (309), Expect = 1e-32
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 542 LELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHE 601
           +E  A ++ +       L  AA RG    +  LL +GA+ N  ++ G   + +    G  
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 602 TCVKALIYFNEQEVLNLNINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660
              + L+            N  +      P+H AAR G+   + +L   GA   + +   
Sbjct: 58  RVAELLL---LHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111

Query: 661 VTPLQNA---NNLHVAKLL 676
             P+  A    +  VA+ L
Sbjct: 112 RLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  117 bits (295), Expect = 1e-30
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
                      L  A + G  + VR L+   A+ N         P+ +    +   +  L
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMMMGS-ARVAEL 62

Query: 860 LLAAKQCNVNAQDYRGNT-ALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LL       N  D    T  +H AA     +   +L ++GAR  +++ +G+  + +A+++
Sbjct: 63  LLLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

Query: 919 TSLSLVRVL 927
               + R L
Sbjct: 122 GHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  112 bits (282), Expect = 7e-29
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGC-SPLHYAATRGHQNVLLLLLHS 577
           +  G   + V    G  +V +L+L  GA+ N  D      P+H AA  G  + L++L  +
Sbjct: 42  NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA +++ D  G   + LA   GH    + L              A   +G +     A  
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-----------AAGGTRGSNHARIDAAE 149

Query: 638 GYTSI 642
           G + I
Sbjct: 150 GPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.8 bits (229), Expect = 9e-22
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 799 NINICNSDGYT-ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
             N  +    T  +H A   G  D + +L    A +++     +  P+ +A +  +  + 
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELGHRDVA 127

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
           R L AA        +          A    +++ 
Sbjct: 128 RYLRAAA-GGTRGSN-----HARIDAAEGPSDIP 155

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  149 bits (378), Expect = 1e-39
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 10/163 (6%)

Query: 519 DDRGFTVLHVAALYGRIK-VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
            +     L  AA  G  + ++ L+  L  + ++ D    +PLH AA      ++ LLL  
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA ++  D  G   LH A + GH    + L+           +NA++    +PLH AA  
Sbjct: 81  GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA------CVNAMDLWQFTPLHEAASK 134

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLN 677
               +  LLL HGA+PTL N    + +  A             
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  140 bits (356), Expect = 1e-36
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N +  +    T LH+A       +V+LL+ + AD++   +   L PLH AC   +  +  
Sbjct: 50  NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYGHYEVTE 108

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LLL      VNA D    T LH AA  N   + +LLL  GA P + N +G++ + MA   
Sbjct: 109 LLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167

Query: 919 TSLSLVRVL 927
                +   
Sbjct: 168 ELRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  138 bits (351), Expect = 5e-36
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 33/183 (18%)

Query: 519 DDRGFTVLHVAALYGRIKVVDL---------------------VLELGADTNSQDLCGCS 557
           +  G + + +A      + +                        L L      Q     +
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213

Query: 558 PLHYAATRGHQNVL----LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ 613
            LH A    H        LLL   GA++N  + +  T LH+A    H   ++ L    + 
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLH---KH 269

Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA 673
                 +NA+++ G + LH AA  G+    +LLL +G++P++ + +  T  Q   N  V 
Sbjct: 270 GA---KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-NEAVQ 325

Query: 674 KLL 676
           ++L
Sbjct: 326 QIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  134 bits (339), Expect = 2e-34
 Identities = 48/185 (25%), Positives = 67/185 (36%), Gaps = 33/185 (17%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D R  T LH+AA Y R+++V L+L+ GAD +++D  G  PLH A + GH  V  LLL  G
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  D    T LH A +         L+          +   VN  G S +  A    
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLL---SHGA---DPTLVNCHGKSAVDMAPTPE 168

Query: 639 YTSIIQLLLDH---------------------GANPTLENKRKVTPLQNA------NNLH 671
               +                                 + +   T L  A          
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228

Query: 672 VAKLL 676
           VA+LL
Sbjct: 229 VAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 3e-32
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 519 DDRGFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
                T LH A       R +V +L+L  GA+ N ++    +PLH AA R H +V+ +L 
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
             GA +N  D+ G TALH A   GH    + L+          + + ++ QG +      
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLL---SYGS---DPSIISLQGFTAAQMGN 321

Query: 636 RWGYTSIIQLLLDHGANPTLENK 658
                  +Q +L         + 
Sbjct: 322 E-----AVQQILSESTPMRTSDV 339

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (322), Expect = 4e-32
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYD-LVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
              +        L  A   G+ + L+ LL     + +     K  TPLH+A   N + IV
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAGYNRVRIV 74

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           +LLL     +V+A+D  G   LH A    H  +  LLLK GA     + +  T LH A  
Sbjct: 75  QLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133

Query: 918 MTSLSLVRVL 927
              + +  +L
Sbjct: 134 KNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (319), Expect = 1e-31
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 799 NINICNSDGYTALHIATSLGHY---DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
                     TALH A +  H     +  LL+   A++N   +   +TPLH+A +  +  
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHND 261

Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           ++ +L       +NA D  G TALH AA+  H     LLL  G+ P I +  G T   M 
Sbjct: 262 VMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (310), Expect = 1e-30
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 24/152 (15%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR-----VKQL----------- 842
           +  + N  G +A+ +A +    + +       + +          VK+            
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208

Query: 843 ----TPLHIACQN---NNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
               T LH A  +       +  LLL     NVN ++    T LH AA   H ++  +L 
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           K GA+    +  GQT LH A     L   R+L
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (310), Expect = 2e-30
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH-QNVLLLLLHSGASINLTDNEGNT 590
           +G+  +   + +  A            L  AA  G+ + ++ LL     + + +D   +T
Sbjct: 3   FGKSAL--DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60

Query: 591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
            LHLA        V+ L+   +      +++A +  G  PLH A  +G+  + +LLL HG
Sbjct: 61  PLHLAAGYNRVRIVQLLL---QHGA---DVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114

Query: 651 ANPTLENKRKVTPLQNA---NNLHVAKLL 676
           A     +  + TPL  A   N + V  LL
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (309), Expect = 2e-30
 Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           MD   FT LH AA   R++V  L+L  GAD    +  G S +  A T   +  L      
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF-- 177

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
                    +G++ L  A         K L        L +         ++ LH A   
Sbjct: 178 ---------KGHSLLQAAREADLAKVKKTLA-------LEIINFKQPQSHETALHCAVAS 221

Query: 638 GYTS---IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            +     + +LLL  GAN   +NK  +TPL  A    +  V ++L
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (309), Expect = 2e-30
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 23/138 (16%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +++  +  G   LH A S GHY++  LL+ + A +N +    Q TPLH A   N + +  
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCS 141

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK---------------------S 897
           LLL+    +    +  G +A+  A         T   K                      
Sbjct: 142 LLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200

Query: 898 GARPQIKNHYGQTCLHMA 915
                 +    +T LH A
Sbjct: 201 EIINFKQPQSHETALHCA 218

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 1e-27
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N+N  N D  T LH+A    H D++ +L  + A +N +  + Q T LH A    +L   R
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGHLQTCR 297

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           LLL+    + +    +G TA               +L      +  +   +  L  A
Sbjct: 298 LLLSYG-SDPSIISLQGFTAAQMGNEAVQ-----QILSESTPMRTSDVDYR--LLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  108 bits (272), Expect = 1e-25
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +    T LHVAA      V++++ + GA  N+ D  G + LH AA  GH     LLL  G
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           +  ++   +G TA  +     +E   + L         +  +   +      L  A++ G
Sbjct: 304 SDPSIISLQGFTAAQMG----NEAVQQILSE-------STPMRTSDVDY--RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 98.7 bits (247), Expect = 2e-22
 Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
            G +AL              L +  A   +    K+   L  A   N   ++ LL     
Sbjct: 3   FGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP-LN 48

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            N +A D R +T LH AA  N   +  LLL+ GA    K+  G   LH A       +  
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

Query: 926 VL 927
           +L
Sbjct: 109 LL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.5 bits (205), Expect = 6e-17
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N  +S G TALH A   GH    RLL++Y +D +I++  +  T   +  +      V+
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL-QGFTAAQMGNE-----AVQ 325

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINN 886
            +L+ +   +   D   +  L  A+   
Sbjct: 326 QILS-ESTPMRTSD--VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 5e-10
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 23/95 (24%)

Query: 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG-YTSIIQ 644
             G +AL LA  +                                L  AAR G    ++ 
Sbjct: 2   EFGKSALDLADPSA-------------------KAVLTGEYKKDELLEAARSGNEEKLMA 42

Query: 645 LLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           LL     N    + RK TPL  A   N + + +LL
Sbjct: 43  LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
           + +I +  G+TA  +       + V+ +++    +           L  A +  +
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD---YRLLEASKAGD 351

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  145 bits (368), Expect = 3e-39
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 10/162 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGA-DTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           D+ G T LH A       V  +++   A D +++   G +PL  AA    + +L  L++S
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
            A +N  D+ G +ALH A    +      L+   +      N +  NN+ ++PL  AAR 
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLL---KNGA---NKDMQNNREETPLFLAARE 200

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G     ++LLDH AN  + +     P   A    +  + +LL
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  139 bits (353), Expect = 3e-37
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 22/175 (12%)

Query: 519 DDRGFTVLHVAALYG-------------RIKVVDLVLELGAD-TNSQDLCGCSPLHYAAT 564
              GFT L +A+  G                V+   +  GA   N  D  G + LH AA 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 565 RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
               +    LL + A  N+ DN G T LH A +   +   + LI          +++A  
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI-----RNRATDLDARM 121

Query: 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           + G +PL  AAR     +++ L++  A+    +    + L  A   NN+  A +L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (349), Expect = 1e-36
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +++    DG T L +A  L    ++  LIN  AD+N V  + + + LH A   NN+    
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAV 174

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LL     N + Q+ R  T L  AA       A +LL   A   I +H  +    +AQ+ 
Sbjct: 175 VLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233

Query: 919 TSLSLVRVL 927
               +VR+L
Sbjct: 234 MHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  133 bits (338), Expect = 3e-35
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G T L +AA      +++ ++   AD N+ D  G S LH+AA   + +  ++LL +G
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ ++ +N   T L LA   G     K L+   +      N +  ++    P   A    
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLL---DHFA---NRDITDHMDRLPRDIAQERM 234

Query: 639 YTSIIQLLLDHGANP 653
           +  I++LL     + 
Sbjct: 235 HHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  131 bits (332), Expect = 2e-34
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL 860
           N  +  G TALH+A      D  + L+   AD NI   + + TPLH A   +   + ++L
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
           +  +  +++A+ + G T L  AA      +   L+ S A     +  G++ LH A  + +
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169

Query: 921 LSLVRVL 927
           +    VL
Sbjct: 170 VDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (295), Expect = 2e-29
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G +ALH A ++ + D   +L+   A+ ++    ++ TPL +A +  +    +
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAK 207

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           +LL     N +  D+        A    H ++  LL          +
Sbjct: 208 VLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  102 bits (256), Expect = 3e-24
 Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 24/148 (16%)

Query: 547 DTNSQDLCGCSPLHYAATRGHQNVLL-------------LLLHSGASI-NLTDNEGNTAL 592
           D N +   G +PL  A+  G                     ++ GAS+ N TD  G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA- 651
           HLA         K L+   E      + N  +N G +PLHAA       + Q+L+ + A 
Sbjct: 62  HLAARYSRSDAAKRLL---EASA---DANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115

Query: 652 NPTLENKRKVTPLQNA---NNLHVAKLL 676
           +         TPL  A       + + L
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 95.2 bits (238), Expect = 6e-22
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 21/130 (16%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           +++N+   DG+T L IA+  G                           +   + +  +++
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVI 39

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
              +       N  D  G TALH AA  + ++ A  LL++ A   I+++ G+T LH A  
Sbjct: 40  SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99

Query: 918 MTSLSLVRVL 927
             +  + ++L
Sbjct: 100 ADAQGVFQIL 109

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.1 bits (178), Expect = 4e-14
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           ++R  T L +AA  G  +   ++L+  A+ +  D     P   A  R H +++ LL    
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 579 ASIN 582
              +
Sbjct: 247 HHHH 250

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  141 bits (357), Expect = 3e-39
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                  L  AA  G+++ V  +LE GAD N+ +  G  P+      G   V  LLL  G
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67

Query: 579 ASINLTDNEGNT-ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A  N  D    T  +H A   G    +  L            ++  +  G  P+  A   
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLH---RAGA---RLDVCDAWGRLPVDLAEEQ 121

Query: 638 GYTSIIQLLLDHGAN 652
           G+  I + L     +
Sbjct: 122 GHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  129 bits (327), Expect = 4e-35
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            I++        L  A + G  + VR L+   AD N + R  +  P+ +    +   +  
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMMMGS-AQVAE 61

Query: 859 LLLAAKQCNVNAQDYRGNT-ALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           LLL       N  D    T  +H AA     +   +L ++GAR  + + +G+  + +A++
Sbjct: 62  LLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 918 MTSLSLVRVL 927
                + R L
Sbjct: 121 QGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  126 bits (318), Expect = 6e-34
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 11/136 (8%)

Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
               +       + L  AA RG    +  LL +GA  N  +  G   + +    G     
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60

Query: 605 KALIYFNEQEVLNLNINAVNNQGD-SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663
           + L+            N  +      P+H AAR G+   + +L   GA   + +     P
Sbjct: 61  ELLL---LHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114

Query: 664 LQNA---NNLHVAKLL 676
           +  A    +  +A+ L
Sbjct: 115 VDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  118 bits (299), Expect = 2e-31
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + N  N  G   + +   +G   +  LL+ + A+ N         P+H A +   L  + 
Sbjct: 37  DPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           +L       ++  D  G   +  A    H ++A  L  +  
Sbjct: 96  VLH-RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
            +++C++ G   + +A   GH D+ R L     D
Sbjct: 103 RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  141 bits (357), Expect = 3e-39
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           + RG T+LH+A++ G I  V+ +L+ G+D N +D  G +PLH A   GH  V+ LLL   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N T  + ++ LH A  NGH   VK L+          + NAVN  G  P+       
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLL---SYGA---SRNAVNIFGLRPVDYTDDES 120

Query: 639 YTSIIQLLLDHGAN 652
             S++ L   + ++
Sbjct: 121 MKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  135 bits (342), Expect = 3e-37
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +    N  G T LHIA+  G    V  L+   +D N+       TPLH AC + +L +V 
Sbjct: 3   DPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVVE 60

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           LLL  K   VN   Y+ ++ LH AA N H ++  LLL  GA     N +G   +      
Sbjct: 61  LLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 919 TSLSLVRVLTHEA 931
           +  SL+ +     
Sbjct: 120 SMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  128 bits (325), Expect = 7e-35
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 10/135 (7%)

Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
           G D  + +  G + LH A+ +G    +  LL +G+  N+ D+ G T LH A N+GH   V
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
           + L+   + +     +N    Q DSPLH AA+ G+  I++LLL +GA+    N   + P+
Sbjct: 60  ELLL---QHKA---LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

Query: 665 QNA---NNLHVAKLL 676
                 +   +  L 
Sbjct: 114 DYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  117 bits (295), Expect = 6e-31
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + N+ +  G+T LH A + GH  +V LL+ ++A +N        +PLH A +N ++ IV+
Sbjct: 35  DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGHVDIVK 93

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           LLL+    + NA +  G   + Y    +  +L  L  K+ +
Sbjct: 94  LLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 831 ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
            D    T  +  T LHIA    ++  V  LL     + N +D+ G T LH A  + H  +
Sbjct: 2   IDPF--TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 891 ATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
             LLL+  A      +   + LH A +   + +V++L
Sbjct: 59  VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 5/34 (14%), Positives = 9/34 (26%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRAD 832
           + N  N  G   +          L+ L     + 
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  140 bits (356), Expect = 6e-39
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
               L  AA  G+   V +++  GA     D  G SPLH AA  GH +   +LL +G S 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           +       T LH+A + GH   V+ L+   +      ++NA +    + LH A    +  
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLL---KHGA---DVNAKDMLKMTALHWATEHNHQE 114

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +++LL+ +GA+   ++K   T    +    N  +A++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  130 bits (330), Expect = 2e-35
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
                +  G + LH+A   GH+    +L+      +  T+V + TPLH+A    + +IV 
Sbjct: 27  PFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVE 84

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LL     +VNA+D    TALH+A  +NH  +  LL+K GA    ++ + +T   ++   
Sbjct: 85  VLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143

Query: 919 TSLSLVRVL 927
            +  L  +L
Sbjct: 144 GNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  124 bits (313), Expect = 4e-33
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G + LH+AA YG     +++L  G   +++     +PLH AA+ GH N++ +LL  G
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  D    TALH AT + H+  V+ LI   +      +++  +    +    +   G
Sbjct: 91  ADVNAKDMLKMTALHWATEHNHQEVVELLI---KYGA---DVHTQSKFCKTAFDISIDNG 144

Query: 639 YTSIIQLL 646
              + ++L
Sbjct: 145 NEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  121 bits (306), Expect = 4e-32
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           D    L  A   G  D VR+L+   A     T     +PLH+A Q  + S   +LL A  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG- 57

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            + +A+     T LH AA   H N+  +LLK GA    K+    T LH A +     +V 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 926 VL 927
           +L
Sbjct: 118 LL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.1 bits (186), Expect = 6e-16
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
           +    L  A   G +  V+ L+               +  G SPLH AA++G+ S  ++L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILM---ANGA---PFTT-DWLGTSPLHLAAQYGHFSTTEVL 53

Query: 647 LDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           L  G +     K   TPL  A    + ++ ++L
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  144 bits (367), Expect = 1e-38
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 13/162 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G +  + A     +++V  +L  GA  N  +     PLH AAT     ++ +LL SG
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQG-DSPLHAAARW 637
              +  D++GNTAL+ A ++G+   VK  +   ++   N  +      G  +  + A   
Sbjct: 86  LDDSQFDDKGNTALYYAVDSGNMQTVKLFV---KK---NWRLMFYGKTGWKTSFYHAVML 139

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
              SI+   L    +   +    ++ +       ++ +  LL
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  141 bits (357), Expect = 2e-37
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 12/160 (7%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
               LH AA     K+V ++L  G D +  D  G + L+YA   G+   + L +     +
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 582 NLTDNEG-NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
                 G  T+ + A      + V   +         +          S +H   + G+ 
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFL-------SEIPSTFDLAILLSCIHITIKNGHV 174

Query: 641 SIIQLLLDHGANPTLENKRKVTP-LQNA---NNLHVAKLL 676
            ++ LLLD+  +    N     P ++ A    ++ + + L
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  134 bits (340), Expect = 3e-35
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +    +  G++A + A +  +  LV  L+N  A  N++       PLH A    +  IV+
Sbjct: 23  DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN---EFPLHQAATLEDTKIVK 79

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG-QTCLHMAQQ 917
           +LL +   + +  D +GNTAL+YA  + +     L +K   R       G +T  + A  
Sbjct: 80  ILLFSG-LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 918 MTSLSLVRVL 927
           +  +S+V   
Sbjct: 139 LNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  130 bits (329), Expect = 1e-33
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G  +  +     + K +        DT   D+ G S  +YA    +  ++  LL++GA  
Sbjct: 1   GMDLSRIN--TWKSKQLKS-FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           NL +NE    LH A        VK L+         L+ +  +++G++ L+ A   G   
Sbjct: 58  NLLENE--FPLHQAATLEDTKIVKILL---FS---GLDDSQFDDKGNTALYYAVDSGNMQ 109

Query: 642 IIQLLLDHGANPTLENKR-KVTPLQNA---NNLHVAKLL 676
            ++L +          K    T   +A   N++ +    
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  129 bits (327), Expect = 2e-33
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + +  +  G TAL+ A   G+   V+L +     +    +    T  + A   N++SIV 
Sbjct: 87  DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQT-CLHMAQQ 917
             L   +           + +H    N H ++  LLL         N       + +A  
Sbjct: 147 YFL--SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204

Query: 918 MTSLSLVRVL 927
              + +++ L
Sbjct: 205 NKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  117 bits (295), Expect = 4e-29
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 519 DDRGF-TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
              G+ T  + A +   + +V   L              S +H     GH ++++LLL  
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 578 GASINLTDNEGNT-ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
             S N  ++      + LA +N     ++AL    + ++   NI +              
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF---KYDI---NIYS-------ANLENVL 230

Query: 637 WGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLH 671
                I +++++       ++  K   +   N L 
Sbjct: 231 LDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLD 265

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  109 bits (275), Expect = 2e-26
 Identities = 15/123 (12%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
                 +   + +HI    GH D++ LL++Y    N    +  +  + +A  N ++ +++
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            L      N+        +A     + +   +A ++++     +  ++     +    ++
Sbjct: 213 ALFKYD-INI-------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264

Query: 919 TSL 921
             +
Sbjct: 265 DEI 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  107 bits (270), Expect = 7e-26
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQC 866
           G     I T       ++  ++   D          +  + A  +NN+ +V  LL     
Sbjct: 1   GMDLSRINT--WKSKQLKSFLS-SKDTFKADV-HGHSASYYAIADNNVRLVCTLLN-AGA 55

Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
             N  +      LH AA    T +  +LL SG      +  G T L+ A    ++  V++
Sbjct: 56  LKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113

Query: 927 L 927
            
Sbjct: 114 F 114

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.1 bits (235), Expect = 3e-21
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 14/135 (10%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSP-LHYAATRGHQNVLLLLLHS 577
                + +H+    G + ++ L+L+    TN+ +     P +  A       +L  L   
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
             +I        +A             K +I   E+ V      + +   D  +    + 
Sbjct: 218 DINI-------YSANLENVLLDDAEIAKMII---EKHV---EYKSDSYTKDLDIVKNNKL 264

Query: 638 GYTSIIQLLLDHGAN 652
                    L     
Sbjct: 265 DEIISKNKELRLMYV 279

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 89.9 bits (224), Expect = 7e-20
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 799 NINICNSDGYT-ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           + N  NS  +   + +A      ++++ L  Y  +I         +        ++  I 
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLDDAEIA 237

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           ++++  K     +  Y  +  +      +        L+
Sbjct: 238 KMIIE-KHVEYKSDSYTKDLDIVKNNKLDEIISKNKELR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.0 bits (188), Expect = 4e-15
 Identities = 7/107 (6%), Positives = 27/107 (25%), Gaps = 13/107 (12%)

Query: 519 DDRGFT-VLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           +   F   + +A     I+++  + +   +  S                   +  +++  
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAKMIIEK 243

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
                      +  +            + +    E  ++ +N    N
Sbjct: 244 HVEYKSDSYTKDLDIVKNNK-----LDEIISKNKELRLMYVNCVKKN 285

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  144 bits (366), Expect = 1e-38
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           ++ G+T LH A    R  +V+L+L  GAD   +   G +P   AA  G   +L L L  G
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLNINAVNNQGDSPLHAA 634
           A +N  D  G TA   A   G    +K L       N +     +   +   G + L  A
Sbjct: 96  ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155

Query: 635 ARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNA-------NNLHVAKLL 676
           A  G+  ++++LLD  GA+    +      L +A       +   +  LL
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  141 bits (358), Expect = 2e-37
 Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 22/175 (12%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G T   +AA+ G +K++ L L  GAD N  D  G +    AA  G    L  L   G
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 579 ASINLTDN----------EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGD 628
           A++NL              G TAL  A   GH   +K L+     + +  ++NA +N G 
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNACDNMGR 183

Query: 629 SPLHAAARWG----YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           + L  A          +I  LLLDHGA+  +  +R  TPL  A    +L + + L
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  141 bits (357), Expect = 2e-37
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 20/169 (11%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLLHSGAS 580
              +L  A     + +V  +LE GA+ N Q+   G +PLH A     ++++ LLL  GA 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
             L    G T   LA   G    +K  +    +     ++N  +  G +    AA +G  
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFL---SKGA---DVNECDFYGFTAFMEAAVYGKV 118

Query: 641 SIIQLLLDHGANPTLENKRKV----------TPLQNA---NNLHVAKLL 676
             ++ L   GAN  L  K K           T L +A    ++ V K+L
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  139 bits (353), Expect = 7e-37
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYA 562
           +NL+  ++K   + +   G T L  AA  G ++V+  L+ E+GAD N+ D  G + L +A
Sbjct: 131 VNLR-RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189

Query: 563 ATRGHQNVLL----LLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
                 + +     LLL  GA +N+    G T L LA    H   V+ L+     E  ++
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL-----EQEHI 244

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP 653
            IN  ++ G + L  A       I +LL   GA+ 
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  138 bits (350), Expect = 2e-36
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 23/176 (13%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD----------LCGCSPLHYAATRGHQ 568
           D  GFT    AA+YG++K +  + + GA+ N +             G + L  AA +GH 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 569 NVL-LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL---NLNINAVN 624
            VL +LL   GA +N  DN G  AL  A  +  ++ V+A+       +L     ++N   
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT-----HLLLDHGADVNVRG 216

Query: 625 NQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVAKLL 676
            +G +PL  A    +  ++Q LL+         +    T L  A       +A+LL
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  130 bits (330), Expect = 8e-34
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL---------TPLHIAC 849
           ++N C+  G+TA   A   G    ++ L    A++N+  + K+          T L  A 
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 850 QNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKN 905
           +  ++ ++++LL     +VNA D  G  AL +A +++  +    +  LLL  GA   ++ 
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216

Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
             G+T L +A +   L LV+ L
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  129 bits (328), Expect = 1e-33
 Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
             +    L  A      DLV+ L+   A++N        TPLH A Q +   IV LLL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-R 60

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
              +   +   G T    AAI     L  L L  GA     + YG T    A     +  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 924 VRVL 927
           ++ L
Sbjct: 121 LKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (308), Expect = 8e-31
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +  +   +G T   +A   G   L++L ++  AD+N        T    A     +  ++
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALK 122

Query: 859 LLLAAKQCNVNAQD----------YRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHY 907
            L   +  NVN +             G TAL  AA   H  +  +LL + GA     ++ 
Sbjct: 123 FLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 908 GQTCLHMA 915
           G+  L  A
Sbjct: 182 GRNALIHA 189

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  117 bits (297), Expect = 2e-29
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 799 NINICNSDGYTALHIATSLGHYD----LVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
           ++N C++ G  AL  A           +  LL+++ AD+N+     + TPL +A +  +L
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHL 232

Query: 855 SIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
            +V+ LL  +   +N  D  G TAL  A       +A LL K GA     +
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  115 bits (290), Expect = 2e-28
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLS-- 855
           +       G TAL  A   GH +++++L++   AD+N    + +   L  A  +++ S  
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDSDV 198

Query: 856 --IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCL 912
             I  LLL     +VN +  RG T L  A    H  L   LL +        +  G+T L
Sbjct: 199 EAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 913 HMAQQMTSLSLVRVL 927
            +A ++    +  +L
Sbjct: 258 LLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.7 bits (203), Expect = 4e-17
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ-GDSPLHAAARWGYTSII 643
             E N  L  A  N     V+ L+   E      N+N    + G +PLH A +     I+
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLL---EGGA---NVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 644 QLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +LLL HGA+P L  K   TP   A    ++ + KL 
Sbjct: 56  ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.4 bits (171), Expect = 5e-13
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE-LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
            +RG T L +A     + +V  +LE    + N  D  G + L  A     + +  LL   
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 578 GASINLTDN 586
           GAS +  D 
Sbjct: 276 GASTDCGDL 284

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  142 bits (361), Expect = 2e-38
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +     +L  ++L G   +V  ++    D +  +  G + LH A   GH  ++  L+  G
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN---QGDSPLHAAA 635
            ++N  D++G T LH A +  +    K L+   E       + A+     Q  +      
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLV---ESGA---AVFAMTYSDMQTAADKCEEM 147

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNA 678
             GYT   Q L        + NK  +  L +    N+  +      
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  140 bits (356), Expect = 7e-38
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 25/231 (10%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +  G   L         K     +  G       L   + L  ++  G  +++  +++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
              +L ++EG TALH A   GH   VK L+   +  V   N+NA ++ G +PLH AA   
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLV---QFGV---NVNAADSDGWTPLHCAASCN 114

Query: 639 YTSIIQLLLDHGANPTLENK---RKVTPLQNA---NNLHVAKLLNAYVHKPK-------- 684
              + + L++ GA          +                ++ L     K          
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIY 174

Query: 685 PLYNYLV--PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRN 733
            L++Y      E   +         +  +  D  E   + +N +EG  PRN
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHR--EDEDEIEWWWARLNDKEGYVPRN 223

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  122 bits (309), Expect = 1e-31
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + ++ N +G TALH A   GH ++V+ L+ +  ++N        TPLH A   NN+ + +
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCK 120

Query: 859 LLLAAKQCNVNAQDYRGN---TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
            L+      V A  Y                +T  +  L     +  I N      L   
Sbjct: 121 FLV-ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  122 bits (309), Expect = 2e-31
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 3/122 (2%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
            G  +L               I +   +        L  L  +       +V+ ++  + 
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY-EV 60

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            + +  +  G TALH A    HT +   L++ G      +  G T LH A    ++ + +
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 926 VL 927
            L
Sbjct: 121 FL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  117 bits (295), Expect = 1e-29
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +   N      L  ++  G +DLV+ +I    D ++    + +T LH A    +  IV+
Sbjct: 30  RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVK 87

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH---YGQTCLHMA 915
            L+     NVNA D  G T LH AA  N+  +   L++SGA      +            
Sbjct: 88  FLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146

Query: 916 QQMTSLSLVRVL 927
            +       + L
Sbjct: 147 MEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  106 bits (266), Expect = 8e-26
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR--VKQLTPLHIACQNNNLSI 856
           N+N  +SDG+T LH A S  +  + + L+   A +  +T   ++         +      
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI--KNHYGQTCLHM 914
            + L    Q  +   +     AL      N   L    +K G    I  +    +     
Sbjct: 155 SQFLY-GVQEKMGIMNKGVIYALWDYEPQNDDELP---MKEGDCMTIIHREDEDEIEWWW 210

Query: 915 AQ 916
           A+
Sbjct: 211 AR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 872 DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           +  G  +L      N     +  +  G R +         L  +       LV+ +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRI 56

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  140 bits (355), Expect = 2e-38
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 14/162 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G     +    G          + AD  S+     +P   AA +  +  L  LL   
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE-D 66

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW 637
             ++  D  G TAL      G + CV+ L    E      +++  +   G + LH AA +
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLLA---EAGA---DLDHRDMRGGLTALHMAAGY 120

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
               +++ L++ GA+  +E++R +T L+ A            
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  130 bits (329), Expect = 6e-35
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                T    AA     + +  +LE   D ++ D  G + L + A  G    + LL  +G
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99

Query: 579 ASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A ++  D   G TALH+A        V+AL+   E      +I   + +G + L  A   
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYVRPEVVEALV---ELGA---DIEVEDERGLTALELAREI 153

Query: 638 GYTSIIQLLLDHGAN 652
             T+     +  G  
Sbjct: 154 LKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (314), Expect = 7e-33
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
             ++  S+  T    A        +  L+    D++ V    + T L       +   VR
Sbjct: 37  AADV-VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGR-TALLFVAGLGSDKCVR 93

Query: 859 LLLAAKQCNVNAQDYR-GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           LL  A   +++ +D R G TALH AA      +   L++ GA  ++++  G T L +A++
Sbjct: 94  LLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

Query: 918 MTSLSLVRVL 927
           +   +     
Sbjct: 153 ILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 1e-31
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +++  + +G TAL     LG    VRLL    AD++       LT LH+A       +V 
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
            L+     ++  +D RG TAL  A     T      ++ G R  ++ 
Sbjct: 128 ALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  120 bits (303), Expect = 2e-31
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           +  +    +G     I    GH           AD+      +  TP   A +  +   +
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQAL 60

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN-HYGQTCLHMAQ 916
             LL  +  +V+A D  G TAL + A         LL ++GA    ++   G T LHMA 
Sbjct: 61  SQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118

Query: 917 QMTSLSLVRVL 927
                 +V  L
Sbjct: 119 GYVRPEVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  110 bits (278), Expect = 4e-28
 Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLLHS 577
           D+ G T L   A  G  K V L+ E GAD + +D+  G + LH AA      V+  L+  
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA I + D  G TAL LA      T     +                           R 
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGNPM-----------------------QFGRRI 169

Query: 638 GYTSIIQLLLDH 649
           G   +I +L   
Sbjct: 170 GLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.8 bits (198), Expect = 3e-17
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 15/104 (14%)

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAAA 635
           +    + T  EG     +   +GH        Y          I A V ++ ++P   AA
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY----------IAADVVSEYETPWWTAA 52

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           R      +  LL    +    ++   T L       +    +LL
Sbjct: 53  RKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 6/66 (9%)

Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNL 670
           EV  +  +    +G        + G++          A+         TP   A    + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 57

Query: 671 HVAKLL 676
                L
Sbjct: 58  QALSQL 63

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL 842
           +I + +  G TAL +A  +         + +   I +   +  L
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 3/65 (4%)

Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
             +     G         + H+          A         +T    A +      +  
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQ 62

Query: 927 LTHEA 931
           L  + 
Sbjct: 63  LLEDR 67

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  137 bits (347), Expect = 6e-38
 Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 6/130 (4%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D  G T LHLA  NGH   VK L+   E      ++NA +  G +PLH AAR G+  
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL---EAGA---DVNAKDKNGRTPLHLAARNGHLE 115

Query: 642 IIQLLLDHGA 651
           +++LLL+ GA
Sbjct: 116 VVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  126 bits (320), Expect = 2e-34
 Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 2/122 (1%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           +G T LH+A   GH ++V+LL+   AD+N   +    TPLH+A +N +L +V+LLL A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAG- 58

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            +VNA+D  G T LH AA N H  +  LLL++GA    K+  G+T LH+A +   L +V+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

Query: 926 VL 927
           +L
Sbjct: 119 LL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  121 bits (306), Expect = 2e-32
 Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 9/125 (7%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
           G +PLH AA  GH  V+ LLL +GA +N  D  G T LHLA  NGH   VK L+   E  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG 58

Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
               ++NA +  G +PLH AAR G+  +++LLL+ GA+   ++K   TPL  A    +L 
Sbjct: 59  A---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115

Query: 672 VAKLL 676
           V KLL
Sbjct: 116 VVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  117 bits (295), Expect = 5e-31
 Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 2/101 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  + +G T LH+A   GH ++V+LL+   AD+N   +  + TPLH+A +N +L +V+
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 85

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           LLL A   +VNA+D  G T LH AA N H  +  LLL++GA
Sbjct: 86  LLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  103 bits (261), Expect = 2e-26
 Identities = 46/90 (51%), Positives = 57/90 (63%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +G
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
           A +N  D  G T LHLA  NGH   VK L+
Sbjct: 92  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 32/61 (52%), Positives = 41/61 (67%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +G
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 579 A 579
           A
Sbjct: 125 A 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  141 bits (357), Expect = 3e-37
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 10/161 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D +      +    G    ++  +     T  +   G      A + G    +L LL  G
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERG 63

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A IN  + +G TALH A  + +   VK L+   E      NIN  +N+G  PLHAAA  G
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLV---ENGA---NINQPDNEGWIPLHAAASCG 117

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           Y  I + L+  GA+    N    TPL  A       + +  
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  137 bits (347), Expect = 6e-36
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 15/161 (9%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           +  G T LH A +   + +V  ++E GA+ N  D  G  PLH AA+ G+ ++   L+  G
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +   ++EG+T L +A     E  ++              +N      ++      R  
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNE------------VNRQGVDIEAARKEEERIM 177

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
                Q L     N     K   T L  A       V KLL
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (318), Expect = 5e-32
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
              +   DG      A S G  + V  L+   ADIN    V  LT LH AC ++N+ +V+
Sbjct: 33  KTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVK 90

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            L+     N+N  D  G   LH AA   + ++A  L+  GA     N  G T L +A++ 
Sbjct: 91  FLVENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149

Query: 919 TSLSLVRVL 927
               L++  
Sbjct: 150 AMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  123 bits (312), Expect = 2e-31
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 519 DDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           +  G T L +A      +++   V   G D  +                 ++    L   
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-------ARKEEERIMLRDARQWLNSG 188

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
             +       G TALH+A   G+   +K LI   +      ++N  +  G +PLHAAA W
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLI---QA---RYDVNIKDYDGWTPLHAAAHW 242

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G     ++L+++  +    NK   T    A      ++ +L 
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  120 bits (304), Expect = 3e-30
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           +N    D   A      +   D  + L +   +     +    T LH+A       +++L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG-TALHVAAAKGYTEVLKL 217

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           L+   + +VN +DY G T LH AA         +L+++    +  N  GQT   +A +
Sbjct: 218 LIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  118 bits (298), Expect = 2e-29
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 6/142 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                                 +     +       G + LH AA +G+  VL LL+ + 
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
             +N+ D +G T LH A + G E   + L+   E      ++ AVN  G +    A    
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILV---ENLC---DMEAVNKVGQTAFDVADEDI 276

Query: 639 YTSIIQLLLDHGANPTLENKRK 660
              + +L        + + ++K
Sbjct: 277 LGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (295), Expect = 5e-29
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIV 857
           ++   NS+G T L IA      +L++  +N +  DI                +       
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEERIMLRDAR 182

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
           + L +    N       G TALH AA   +T +  LL+++     IK++ G T LH A  
Sbjct: 183 QWLNS-GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

Query: 918 MTSLSLVRVL 927
                  R+L
Sbjct: 242 WGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  116 bits (292), Expect = 1e-28
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           + + ++       +   +G    +   +  R    +            AC + +   V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLR 58

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
           LL     ++N  +  G TALH A I+++ ++   L+++GA     ++ G   LH A    
Sbjct: 59  LLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 920 SLSLVRVL 927
            L +   L
Sbjct: 118 YLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (276), Expect = 1e-26
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N       G TALH+A + G+ ++++LLI  R D+NI       TPLH A         R
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEACR 249

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           +L+    C++ A +  G TA   A  +    L  L  K   
Sbjct: 250 ILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 99.1 bits (248), Expect = 6e-23
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
              D             G +  L   +       +  ++G   L  A ++G    V  L+
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLL 60

Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA- 667
              E+     +IN  N  G + LH A       +++ L+++GAN    +     PL  A 
Sbjct: 61  ---ERGA---DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

Query: 668 --NNLHVAKLL 676
               L +A+ L
Sbjct: 115 SCGYLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 1e-15
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 581 INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYT 640
           + + D +      L    G ET ++  +    +           + G +   AA   G T
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPV---VKRK---KTKVKFDDG-AVFLAACSSGDT 53

Query: 641 SIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             +  LL+ GA+    N   +T L  A   +N+ + K L
Sbjct: 54  EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.3 bits (155), Expect = 7e-11
 Identities = 13/71 (18%), Positives = 27/71 (38%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G+T LH AA +G+ +   +++E   D  + +  G +    A       +  L     
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

Query: 579 ASINLTDNEGN 589
              +    + +
Sbjct: 289 LLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.3 bits (98), Expect = 8e-04
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
           ++   N  G TA  +A       L  L        +
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  138 bits (351), Expect = 4e-37
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 8/170 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                T    AA     + +  +LE   D ++ D  G + L + A  G    + LL  +G
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 579 ASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           A ++  D   G TALH+A        V+AL+   E      +I   + +G + L  A   
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALV---ELGA---DIEVEDERGLTALELAREI 154

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLY 687
             T+     +  G    LE    V   Q      V +++          Y
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  136 bits (344), Expect = 4e-36
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 14/162 (8%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G     +    G          + AD  S+     +P   AA +  +  L  LL   
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE-D 67

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW 637
             ++  D  G TAL      G + CV+ L    E      +++  +   G + LH AA +
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLA---EA---GADLDHRDMRGGLTALHMAAGY 121

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
               +++ L++ GA+  +E++R +T L+ A            
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  123 bits (312), Expect = 6e-32
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +++  + +G TAL     LG    VRLL    AD++       LT LH+A       +V 
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            L+     ++  +D RG TAL  A     T      ++ G R           +   Q  
Sbjct: 129 ALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---IGLEKVINVLEGQVF 184

Query: 919 TSLSLVRVL 927
               +  ++
Sbjct: 185 EYAEVDEIV 193

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  119 bits (301), Expect = 2e-30
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           +  +    +G     I    GH           AD+      +  TP   A +  +   +
Sbjct: 6   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQAL 61

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN-HYGQTCLHMAQ 916
             LL  +  +V+A D  G TAL + A         LL ++GA    ++   G T LHMA 
Sbjct: 62  SQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119

Query: 917 QMTSLSLVRVL 927
                 +V  L
Sbjct: 120 GYVRPEVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  106 bits (266), Expect = 8e-26
 Identities = 28/146 (19%), Positives = 44/146 (30%), Gaps = 19/146 (13%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T LH+AA Y R +VV+ ++ELGAD   +D  G + L  A            +  G  I
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
            L        +       +                   I     +G    +         
Sbjct: 171 GLEK---VINVLEGQVFEYAEVD--------------EIVEKRGKGKDVEYLVRWKDGGD 213

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA 667
              +   H A    ++      L+ A
Sbjct: 214 CEWVKGVHVAEDVAKDYE--DGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 91.9 bits (229), Expect = 7e-21
 Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 15/117 (12%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           +I + +  G TAL +A  +         + +   I     ++++  +          +  
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG----LEKVINVLEGQVFEYAEVD- 190

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
                    +  +  +G    +     +  +   +     A    K+   +  L  A
Sbjct: 191 --------EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 15/105 (14%)

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAA 634
            +    + T  EG     +   +GH        Y          I A V ++ ++P   A
Sbjct: 3   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY----------IAADVVSEYETPWWTA 52

Query: 635 ARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           AR      +  LL    +    ++   T L       +    +LL
Sbjct: 53  ARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 24/104 (23%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC----------------------GC 556
           D+RG T L +A    +       ++ G     + +                       G 
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200

Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH 600
              +    +   +   +     A     D E    L  A     
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 17/98 (17%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQ-------------CNVNAQDYRGNTALHYAAINNHTN 889
               I  +      +  L+  K               +V +      T    AA      
Sbjct: 3   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQ 59

Query: 890 LATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
             + LL+        +  G+T L     + S   VR+L
Sbjct: 60  ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 5/60 (8%)

Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVK-QLTPLHIACQNNNL 854
           E   I      G    ++       D   +   + A+       K     L  A   + +
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV----AKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 6/66 (9%)

Query: 614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNL 670
           EV  +  +    +G        + G++          A+         TP   A    + 
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 58

Query: 671 HVAKLL 676
                L
Sbjct: 59  QALSQL 64

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  138 bits (351), Expect = 9e-36
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 519 DDRGFTVLHVAALYGRIKVVDL--------VLELGADTNSQDLCGCSPLHYAATRGHQNV 570
                TVLH  A     +  +          +  GAD N+ D    +PL  A     + +
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 571 LLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSP 630
           +  L+ +GA   + +    +ALH A  N     +  ++       L  +I  ++  G + 
Sbjct: 182 VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML---NSTKLKGDIEELDRNGMTA 238

Query: 631 LHAAARWGYT---SIIQLLLDHGAN--------PTLENKRKVTPLQNA---NNLHVAKLL 676
           L   A        +  +LL++ GA            E  +  T L  A   +N+ + K L
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  137 bits (347), Expect = 3e-35
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 22/175 (12%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLE---LGADTNSQDLCGCSPLHYAATRGHQNVLL--- 572
           +    + LH AA      ++  +L    L  D    D  G + L   A    ++ +    
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

Query: 573 LLLHSGASINLT--------DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN 624
           LL+  GA ++            +G TALH A    +   VK L+          N +  +
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-----GSNKDKQD 310

Query: 625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
             G +P+  AA+ G   ++  L+  GA+    +    T  Q A   N+ ++  + 
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  133 bits (336), Expect = 8e-34
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 799 NINICNSDGYTALHIATSLGHYDLV---RLLINYRADINIVTRVKQ-------LTPLHIA 848
           +I   + +G TAL I       D V   +LL+   A ++     ++        T LH A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

Query: 849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYG 908
            Q +N+ IV+ L+  K  N + QD  G T +  AA      +   L++ GA  +  +   
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 346

Query: 909 QTCLHMAQQMTSLSLVRVL 927
            T   +AQ     ++V + 
Sbjct: 347 HTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (311), Expect = 1e-30
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 519 DDRGFTVLHVAALYG---RIKVVDLVLELGADTN--------SQDLCGCSPLHYAATRGH 567
           D  G T L + A      ++    L++E GA  +        S+   G + LHYAA   +
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 568 QN-VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ 626
              V  L+   G++ +  D +G T + LA   G    V  LI   +Q     ++ AV+  
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI---QQGA---SVEAVDAT 345

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGAN 652
             +    A    + +I+ +       
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  122 bits (309), Expect = 3e-30
 Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
                  +    LH   + G Y +   +     +I         T LH    N++     
Sbjct: 86  IPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSE 142

Query: 859 LLLAAKQ-------CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTC 911
            L+  +         +VNA D   NT L  A +     L   L+K+GA P I N   ++ 
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202

Query: 912 LHMAQQMTSLSLVRVL 927
           LH A       ++  +
Sbjct: 203 LHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  112 bits (282), Expect = 8e-27
 Identities = 36/164 (21%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYR--- 830
            L   A     + E    P+T E +NI        T LH   S    +    LI +    
Sbjct: 97  KLHTEAAGSYAITE----PITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKE 151

Query: 831 -----ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN 885
                AD+N +    + TPL +A       +V  L+ A   +    +    +ALH AA N
Sbjct: 152 CIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAAN 209

Query: 886 NHTNLATLLL---KSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
               +   +L   K     +  +  G T L +         V  
Sbjct: 210 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (261), Expect = 4e-24
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIV 857
             +     G TALH A  + +  +V+ L+  + ++ +      + TP+ +A Q   + +V
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TPIMLAAQEGRIEVV 329

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
             L+  +  +V A D   +TA   A  NNH N+  +  +   
Sbjct: 330 MYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (261), Expect = 5e-24
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYA 562
           ++   +  K +      +G T LH AA    + +V  LV E G++ + QD  G +P+  A
Sbjct: 264 VDYDGAARKDSE---KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           A  G   V++ L+  GAS+   D   +TA  LA  N H   V    
Sbjct: 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (253), Expect = 4e-23
 Identities = 26/179 (14%), Positives = 44/179 (24%), Gaps = 28/179 (15%)

Query: 509 SQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQ 568
            +               L  A+  G IK            N        P       G+ 
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGND 74

Query: 569 NVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGD 628
            +      +       + E    LH      +    + +     + V   NI    +   
Sbjct: 75  FLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAI-TEPIT---RESV---NIIDPRH-NR 126

Query: 629 SPLHAAARWGYTSIIQLLLDH--------GANPTLENKRKVTPLQNA---NNLHVAKLL 676
           + LH  A        + L+ H        GA+    +  + TPL  A       +   L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  100 bits (250), Expect = 1e-22
 Identities = 21/137 (15%), Positives = 35/137 (25%), Gaps = 12/137 (8%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
             N                G+  L                 +    LH      + +I  
Sbjct: 53  QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP-ESPIKLHTEA-AGSYAITE 110

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS--------GARPQIKNHYGQT 910
            +   +  N+    +   T LH+ A N+    +  L+          GA     +    T
Sbjct: 111 PIT-RESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168

Query: 911 CLHMAQQMTSLSLVRVL 927
            L +A       LV  L
Sbjct: 169 PLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.8 bits (213), Expect = 6e-18
 Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 13/128 (10%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
            +   +    +L  A+  G+    R  + +            L P      N N  +   
Sbjct: 30  NHQSITSSQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDF 79

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMT 919
                Q      +      LH  A      +   + +          + +T LH     +
Sbjct: 80  NHTNLQ-IPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR-HNRTVLHWIASNS 136

Query: 920 SLSLVRVL 927
           S      L
Sbjct: 137 SAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+ G T + +AA  GRI+VV  +++ GA   + D    +    A    H N++ +     
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

Query: 579 ASI 581
              
Sbjct: 370 PER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 6/35 (17%), Positives = 18/35 (51%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADI 833
           ++   ++  +TA  +A +  H+++V +    R + 
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  130 bits (330), Expect = 2e-34
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
              +L  AAL G ++VV   ++   D +  +  G + LH A    + +++  L+ +GA++
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAAARW--G 638
           N  D+ G T LH A +        AL+   +       I A   + G +       +  G
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMALV---QHGA---AIFATTLSDGATAFEKCDPYREG 134

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL 676
           Y      L D   +  L N   V  L + +     +L 
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS 172

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  120 bits (304), Expect = 5e-31
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 10/152 (6%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           ++ G T LH A       +VD ++  GA+ NS D  G +PLH AA+     + + L+  G
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110

Query: 579 ASINLTD-NEGNTALHLATN--NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
           A+I  T  ++G TA         G+  C   L    +      ++  +N+     L   +
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ------SMGLMNSGAVYALWDYS 164

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
              +   +             +  + T    A
Sbjct: 165 A-EFGDELSFREGESVTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  118 bits (298), Expect = 3e-30
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 799 NINICNSDGY---TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
           +              L  A   G  ++V+  +    D +     + +T LH A    N S
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANYS 68

Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH-YGQTCLHM 914
           IV  L+ A   NVN+ D  G T LH AA  N T +   L++ GA         G T    
Sbjct: 69  IVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

Query: 915 A 915
            
Sbjct: 128 C 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  113 bits (286), Expect = 1e-28
 Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           + +  N +G TALH A    +Y +V  LI   A++N        TPLH A   N+  I  
Sbjct: 46  DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASCNDTVICM 104

Query: 859 LLLAAKQCNVNAQDYR-GNTALHYAAI--NNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
            L+      + A     G TA          + + AT L        + N      L   
Sbjct: 105 ALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  104 bits (262), Expect = 2e-25
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 4/119 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA--CQNNNLSI 856
           N+N  +S G+T LH A S     +   L+ + A I   T     T        +      
Sbjct: 79  NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC 138

Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
              L    + ++   +     AL   +      L+            ++   +T    A
Sbjct: 139 ATYLA-DVEQSMGLMNSGAVYALWDYSAEFGDELS-FREGESVTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  101 bits (254), Expect = 2e-24
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 823 VRLLINYRADINIVTRVKQ--LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH 880
           +R ++          R +   L  L  A     L +V+  +  +  + +  +  G TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALH 59

Query: 881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            A    + ++   L+ +GA     + +G T LH A       +   L
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 11/154 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC-GCSPLHYAAT--RGHQNVLLLLL 575
           D  G+T LH AA      +   +++ GA   +  L  G +          G+ +    L 
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
               S+ L ++    AL   +    +     L +   +   ++ +   +   ++    AA
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAEFGDE----LSFREGE---SVTVLRRDGPEETDWWWAA 196

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
             G    +      G  P ++ +R      + ++
Sbjct: 197 LHGQEGYVPRNY-FGLFPRVKPQRSKVKHHHHHH 229

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.0 bits (237), Expect = 4e-22
 Identities = 37/261 (14%), Positives = 63/261 (24%), Gaps = 69/261 (26%)

Query: 573 LLLHSGASINLTDNEGN---TALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS 629
            +L    S              L  A   G    V+  +   ++     + +  N +G +
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV---KEMN---DPSQPNEEGIT 56

Query: 630 PLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPL 686
            LH A      SI+  L+  GAN    +    TPL  A   N+  +   L          
Sbjct: 57  ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL---------- 106

Query: 687 YNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL 746
                    V                   + A I    + +G                  
Sbjct: 107 ---------VQ------------------HGAAIFATTLSDGATAFEKC---------DP 130

Query: 747 IENNEIKLIKSYFGLSNEEKVP---DNACHPLCQCAKCKEDVVE-SESRPVTDECLNINI 802
                       +    E+ +      A + L   +    D +   E      E + +  
Sbjct: 131 YREGYADCAT--YLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREG-----ESVTVLR 183

Query: 803 CNSDGYTALHIATSLGHYDLV 823
            +    T    A   G    V
Sbjct: 184 RDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 7/118 (5%)

Query: 799 NINICN-SDGYTALHIATSL--GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
            I     SDG TA         G+ D    L +    + ++        L          
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV-YALWDYSAEFGD- 169

Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
                   +   V  +D    T   +AA++            G  P++K    +   H
Sbjct: 170 -ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF-GLFPRVKPQRSKVKHH 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 4/83 (4%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNNLSIV 857
           ++ + NS    AL    S    D +         + ++ R     T    A  +     V
Sbjct: 148 SMGLMNSGAVYALWDY-SAEFGDELSFREG--ESVTVLRRDGPEETDWWWAALHGQEGYV 204

Query: 858 RLLLAAKQCNVNAQDYRGNTALH 880
                     V  Q  +     H
Sbjct: 205 PRNYFGLFPRVKPQRSKVKHHHH 227

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  126 bits (319), Expect = 3e-34
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 2/122 (1%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
            S        A   G  D V+  +    D+N         PLH A     L I+  LL  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLL- 61

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
           K  ++NA D    T L  A    H +   LLL  GA   +K   G T           +L
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

Query: 924 VR 925
           ++
Sbjct: 122 LQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  121 bits (306), Expect = 2e-32
 Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
                  A   G +  V   +  G D N     G  PLHYAA  G   +L  LL  GA I
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D    T L  A   GH +CVK L+    +     +       G +   A       +
Sbjct: 67  NAPDKHHITPLLSAVYEGHVSCVKLLL---SKGA---DKTVKGPDGLTAFEATDNQAIKA 120

Query: 642 IIQ 644
           ++Q
Sbjct: 121 LLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  117 bits (296), Expect = 4e-31
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
                 +A   G  + +   +  G  +N T   G   LH A + G    ++ L+    + 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL---LKG 63

Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK 674
               +INA +    +PL +A   G+ S ++LLL  GA+ T++    +T  +  +N  +  
Sbjct: 64  A---DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

Query: 675 LL 676
           LL
Sbjct: 121 LL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  104 bits (263), Expect = 9e-27
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N     G   LH A   G  +++  L+   ADIN   +    TPL  A    ++S V+
Sbjct: 32  DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI-TPLLSAVYEGHVSCVK 90

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNL 890
           LLL+    +   +   G TA           L
Sbjct: 91  LLLSKG-ADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.8 bits (250), Expect = 5e-25
 Identities = 26/87 (29%), Positives = 43/87 (49%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
            + G   LH AA  G++++++ +L  GAD N+ D    +PL  A   GH + + LLL  G
Sbjct: 37  LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

Query: 579 ASINLTDNEGNTALHLATNNGHETCVK 605
           A   +   +G TA     N   +  ++
Sbjct: 97  ADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.1 bits (230), Expect = 3e-22
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
                A +N +L  V+  +A    +VN     G   LHYAA      +   LL  GA   
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
             + +  T L  A     +S V++L
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 84.8 bits (211), Expect = 9e-20
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQ 644
            +  +     A  NG    VK  +    +     ++N     G  PLH AA  G   I++
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYV---AKGE---DVNRTLEGGRKPLHYAADCGQLEILE 57

Query: 645 LLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            LL  GA+    +K  +TPL +A    ++   KLL
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            + +  D     A + G    ++  +  G +     +    PL  A     L + + L
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 9/53 (16%), Positives = 16/53 (30%)

Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +    +A  N   +     +  G         G+  LH A     L ++  L
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  125 bits (316), Expect = 6e-34
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
               + DG T LH A   GH + V+ L++  AD+N  ++    TPLH+A +N +  IV+L
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKL 60

Query: 860 LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
           LLA K  +VNA+   GNT  H A  N H  +  LL   GA    ++       H
Sbjct: 61  LLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  116 bits (294), Expect = 5e-31
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 8/120 (6%)

Query: 545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCV 604
           G    S+D  G +PLH AA  GH   +  LL  GA +N    +GNT LHLA  NGH   V
Sbjct: 1   GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 605 KALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL 664
           K L+    +     ++NA +  G++P H A + G+  I++LL   GA+    +       
Sbjct: 59  KLLL---AKGA---DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  114 bits (289), Expect = 3e-30
 Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G T LH AA  G  + V  +L  GAD N++   G +PLH AA  GH  ++ LLL  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLH 632
           A +N    +GNT  HLA  NGH   VK L     +     ++NA +       H
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLD---AKGA---DVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  + DG T LH+A   GH ++V+LL+   AD+N  ++    TP H+A +N +  IV+
Sbjct: 34  DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGHHEIVK 92

Query: 859 LLLAAKQCNVNAQDYRGNTALHY 881
           LL A    +VNA+ +  +   H+
Sbjct: 93  LLDAKG-ADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.0 bits (235), Expect = 5e-23
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           TPLH A +N +   V+ LL+ K  +VNA+   GNT LH AA N H  +  LLL  GA   
Sbjct: 11  TPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
            ++  G T  H+A++     +V++L
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.0 bits (222), Expect = 3e-21
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 11/102 (10%)

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           G        +GNT LH A  NGH   VK L+    +     ++NA +  G++PLH AA+ 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLL---SKGA---DVNARSKDGNTPLHLAAKN 52

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G+  I++LLL  GA+    +K   TP   A    +  + KLL
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 2e-11
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
              ++D  GNT LH AA N H      LL  GA    ++  G T LH+A +     +V++
Sbjct: 3   MWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 927 L 927
           L
Sbjct: 61  L 61

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHY 561
              G T  H+A   G  ++V L+   GAD N++        H+
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  125 bits (316), Expect = 4e-33
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLL------ 572
            +  + VL       R K+   ++  GAD  S+   G +        G  ++        
Sbjct: 39  SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK 98

Query: 573 LLLHSGASINLTDNEGNTALHLATNNGHETCVKAL-IYFNEQEVLNLNINAVNNQGDSPL 631
           + L  GA I          +     N      + + +Y        L +   +  G + L
Sbjct: 99  IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158

Query: 632 HAAARWGYTSIIQLLLDHGANPTLENK 658
               R      ++++ D+     L+  
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  113 bits (285), Expect = 5e-29
 Identities = 23/174 (13%), Positives = 51/174 (29%), Gaps = 25/174 (14%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGAD---TNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
            +  +  AA+ G  +    + E G +   +  +       L          + + L++ G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL------NINAVNNQGDSPLH 632
           A I     EG T        G              E+  +      +I A+       + 
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTT------ELCKIFLEKGADITALYKPYKIVVF 119

Query: 633 AAARWGYTS------IIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVAKLL 676
                 +        + +L+    G    +++K  +T L+           K++
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  111 bits (279), Expect = 4e-28
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 799 NINICNSDGYTALHIATSLGHYD------LVRLLINYRADINIVTRVKQLTPLHIACQNN 852
           +I     +G T        G  D      L ++ +   ADI  + +  +   +     N 
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK-IVVFKNIFNY 125

Query: 853 NLS------IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
            +       + +L+ +     +  +D  G TAL +           ++     +  +K 
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  108 bits (271), Expect = 3e-27
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 13/145 (8%)

Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
            E     + ++  Y  L        Y +   LIN  ADI   T+    T      Q    
Sbjct: 30  YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGT-TLFFPLFQGGGN 88

Query: 855 SIVRLLLAAKQ-----CNVNAQDYRGNTALHYAAINNHTNLA-------TLLLKSGARPQ 902
            I       K       ++ A        +     N   +          +  +SG +  
Sbjct: 89  DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148

Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
           IK+ +G T L   ++      ++++
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.8 bits (231), Expect = 9e-22
 Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 9/118 (7%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL--TPLHIACQNNNLSIVRLLLAA 863
             Y  +  A  LG Y+    L     +         +    L          I   L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTN------LATLLLKSGARPQIKNHYGQTCLHMA 915
              ++ ++   G T           +      L  + L+ GA         +  +   
Sbjct: 65  G-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 11/85 (12%), Positives = 19/85 (22%), Gaps = 11/85 (12%)

Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW----GYTSI 642
                +  A   G       L             +  +    + L+   R         I
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELF-------EKGYEDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 643 IQLLLDHGANPTLENKRKVTPLQNA 667
              L++ GA+     K   T     
Sbjct: 58  SMFLINKGADIKSRTKEGTTLFFPL 82

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  130 bits (327), Expect = 1e-32
 Identities = 59/437 (13%), Positives = 108/437 (24%), Gaps = 90/437 (20%)

Query: 435 MSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPL 494
            +D   +L  +  + N  +            L   + +   L      E    L   +  
Sbjct: 13  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY-- 70

Query: 495 CSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLV---LELGADTNSQ 551
                     N    Q          +   +  VAA+ G    +D +   L         
Sbjct: 71  ------YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124

Query: 552 DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD--NEGNTALHLATNNGHETCVKALIY 609
                     AA  GH +VL  L     +  +     E   A  LA  NGH   +  L  
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC- 183

Query: 610 FNEQEVLNLNINAVNNQGDSPLH-AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
              +         +  +       AA   G+ ++I  LLD                    
Sbjct: 184 ---ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML------------AYA 228

Query: 669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREG 728
            +H  +    YV+       ++       +             +     +N   V     
Sbjct: 229 EIHEFEYGEKYVNP------FIARHVNRLKE-----------MHDAFKLSNPDGV----- 266

Query: 729 VRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVES 788
                          F L+               +E          L +  +  E +++ 
Sbjct: 267 ---------------FDLVTK-------------SECLQGFYMLRNLIR--RNDEVLLDD 296

Query: 789 ----ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTP 844
                S P             D    L +A  LG+     LL++  + + +     +   
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL----TKANN 352

Query: 845 LHIACQNNNLSIVRLLL 861
            +I      L +  + L
Sbjct: 353 YYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 94.6 bits (235), Expect = 8e-21
 Identities = 24/185 (12%), Positives = 57/185 (30%), Gaps = 11/185 (5%)

Query: 737 IKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKE--DVVESESRPVT 794
           +++V QL  L   +  +  K  +  ++++ +       +     C    D +      + 
Sbjct: 60  MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCL----LL 115

Query: 795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ-LTPLHIACQNNN 853
                + +  ++ Y A  +A   GH  ++  L        +     +      +A +N +
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 854 LSIVRLLLAAKQCNVNAQDYR--GNTALHYAAINN-HTNLATLLLKSGARPQIKNHYGQT 910
           L ++  L             +     A  +AA+   H N+   LL           +   
Sbjct: 176 LHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 234

Query: 911 CLHMA 915
                
Sbjct: 235 YGEKY 239

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 28/136 (20%)

Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL--------LHS 577
             ++   G   +V           S+ L G   L     R  + +L  +        + +
Sbjct: 258 FKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS-PLHAAAR 636
            A       + N  L LA   G++     L+          +I +V     +   +    
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLL----------SIPSVLALTKANNYYINET 358

Query: 637 WGYTSIIQLLLDHGAN 652
            G   +  + L+H  +
Sbjct: 359 GGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 20/131 (15%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN---LSIVRLL 860
             + + A  ++   G +DLV               ++    L    + N+   L  +R L
Sbjct: 251 LKEMHDAFKLSNPDGVFDLV----------TKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 861 LAAKQ----CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
           L+                 N  L  A    +     LLL   +   +         ++ +
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYYINE 357

Query: 917 QMTSLSLVRVL 927
               L L  V 
Sbjct: 358 TGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 9e-11
 Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 13/105 (12%)

Query: 806 DGYTALHIATSLGHYDLVRLL--------INYRADINIVTRVKQLTPLHIACQNNNLSIV 857
            G+  L          L+  +        I   A    +        L +A +  N    
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGAC 335

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
            LLL+        +        +        +L  + L+      
Sbjct: 336 ALLLSIPSVLALTK----ANNYYINETGGRLDLRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 12/129 (9%), Positives = 33/129 (25%), Gaps = 22/129 (17%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
              I   + Y     A   GH++++  L++    +                +     +  
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI--------HEFEYGEKYVNP 242

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            +          +    + A   +  +   +L T         + +   G   L    + 
Sbjct: 243 FI-----ARHVNRLKEMHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRR 288

Query: 919 TSLSLVRVL 927
               L+  +
Sbjct: 289 NDEVLLDDI 297

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  124 bits (314), Expect = 2e-32
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 16/171 (9%)

Query: 522 GFTVLHVAALYGRIKVVD-LVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGAS 580
             + L +AA    ++ +  L+   G + + +   G + LH AA   +    ++L+ +   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 581 I-----NLTDNEGNTALHLATNNGHETCVKALI-------YFNEQEVLNLNINAVNNQGD 628
           +          EG TALH+A  N +   V+AL+             V +   + +   G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 629 SPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            PL  AA  G   I++LL++HGA+   ++    T L       N   A  +
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQM 173

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  123 bits (312), Expect = 5e-32
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 37/189 (19%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGAD-----TNSQDLCGCSPLHYAATRGHQNVLLL 573
              G T LH+AALY  ++   +++E   +       S+   G + LH A    + N++  
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 574 LLHSGASINLTDN-------------EGNTALHLATNNGHETCVKALIYFNEQEVLNLNI 620
           LL  GAS++                  G   L  A   G E  V+ LI   E      +I
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI---EHGA---DI 147

Query: 621 NAVNNQGDSPLHAAARWGYTSI----IQLLLDHGAN------PTLENKRKVTPLQNA--- 667
            A ++ G++ LH        +       LLL +           + N + +TP + A   
Sbjct: 148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207

Query: 668 NNLHVAKLL 676
            N+ + + L
Sbjct: 208 GNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  116 bits (293), Expect = 2e-29
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 18/134 (13%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR----VKQLTPLHIACQNNNL 854
            ++   + G TALHIA    + +   +L+    ++          +  T LHIA  N N+
Sbjct: 29  EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88

Query: 855 SIVRLLLAAKQCNVNAQD-------------YRGNTALHYAAINNHTNLATLLLKSGARP 901
           ++VR LLA    +V+A+              Y G   L +AA      +  LL++ GA  
Sbjct: 89  NLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147

Query: 902 QIKNHYGQTCLHMA 915
           + ++  G T LH+ 
Sbjct: 148 RAQDSLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  116 bits (292), Expect = 2e-29
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 23/151 (15%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL------------TPLH 846
            +     +G TALHIA    + +LVR L+   A ++                     PL 
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

Query: 847 IACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT----LLLKSGA--- 899
            A    +  IVRLL+     ++ AQD  GNT LH   +  +   A     LLL       
Sbjct: 127 FAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185

Query: 900 ---RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
                 + N+ G T   +A    ++ + + L
Sbjct: 186 LKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (276), Expect = 3e-27
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 807 GYTALHIATSLGHYDLV-RLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA-- 863
             + L +A        + +LL     +++    + + T LHIA   +NL    +L+ A  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAP 61

Query: 864 --KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA-------------RPQIKNHYG 908
                 + ++ Y G TALH A IN + NL   LL  GA             RP    +YG
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 909 QTCLHMAQQMTSLSLVRVL 927
           +  L  A  + S  +VR+L
Sbjct: 122 EHPLSFAACVGSEEIVRLL 140

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  121 bits (306), Expect = 2e-32
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 799 NINICN-SDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           + +  + SD    L  A   G  D VR+L+   AD+N        TPL++A  + +L IV
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEIV 63

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
            +LL     +VNA D  G T LH AA   H  +A +LLK GA    ++ +G+T   ++  
Sbjct: 64  EVLLKNG-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 918 MTSLSLVRVL 927
             +  L  +L
Sbjct: 123 NGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  116 bits (294), Expect = 9e-31
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
               L  AA  G+   V +++  GAD N++D  G +PL+ A   GH  ++ +LL +GA +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D  G T LHLA   GH    + L+   +      ++NA +  G +    +   G   
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVLL---KHGA---DVNAQDKFGKTAFDISIGNGNED 127

Query: 642 IIQLLLDH 649
           + ++L   
Sbjct: 128 LAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  111 bits (281), Expect = 5e-29
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 545 GADTN-SQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC 603
           G+  +          L  AA  G  + + +L+ +GA +N  D  G T L+LAT +GH   
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP 663
           V+ L+   +      ++NAV+  G +PLH AA  G+  I ++LL HGA+   ++K   T 
Sbjct: 63  VEVLL---KNGA---DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116

Query: 664 LQNA---NNLHVAKLL 676
              +    N  +A++L
Sbjct: 117 FDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  108 bits (272), Expect = 8e-28
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +  G T L++AT+ GH ++V +L+   AD+N V  +   TPLH+A    +L I  
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF-TPLHLAAFIGHLEIAE 97

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           +LL     +VNAQD  G TA   +  N + +LA +L K
Sbjct: 98  VLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 99.0 bits (248), Expect = 2e-24
 Identities = 34/90 (37%), Positives = 54/90 (60%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D+ G T L++A  +G +++V+++L+ GAD N+ D  G +PLH AA  GH  +  +LL  G
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALI 608
           A +N  D  G TA  ++  NG+E   + L 
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINY 829
           ++N  +  G TA  I+   G+ DL  +L   
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  123 bits (310), Expect = 7e-32
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 9/161 (5%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D    T LH A   G  ++V+ +L+LG   N +D  G SPLH AA+ G   ++  LL  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A +N  +  G T LH A +         L+          N +A ++   + +H AA  G
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA------NPDAKDHYDATAMHRAAAKG 150

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
              ++ +LL + A+  +++    TPL  A     +  AK L
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  123 bits (309), Expect = 9e-32
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
              + ++A      ++ + +L   +     D    + LH+A + GH  ++  LL  G  +
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 582 NLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTS 641
           N  D+ G + LH+A + G +  VKAL+          ++NAVN  G +PLH AA      
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGA------HVNAVNQNGCTPLHYAASKNRHE 120

Query: 642 IIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           I  +LL+ GANP  ++    T +  A    NL +  +L
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  119 bits (301), Expect = 1e-30
 Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           DD G++ LH+AA  G  ++V  +L  GA  N+ +  GC+PLHYAA++    + ++LL  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A+ +  D+   TA+H A   G+   V  L+++        + N  + +G++PLH A    
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEE 183

Query: 639 YTSIIQLLLDHGANPTLENKRKVTPLQNA-NNLHVAKLL 676
                + L+  GA+  +ENK + TPLQ A   L +    
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  115 bits (289), Expect = 5e-29
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 2/124 (1%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
                   ++A S    +L   ++  ++      +    T LH AC   +  IV  LL  
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQL 62

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
               VN +D  G + LH AA      +   LL  GA     N  G T LH A       +
Sbjct: 63  G-VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 924 VRVL 927
             +L
Sbjct: 122 AVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  114 bits (286), Expect = 1e-28
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
                + D  TALH A S GH ++V  L+     +N        +PLHIA       IV+
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVK 90

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL  K  +VNA +  G T LHYAA  N   +A +LL+ GA P  K+HY  T +H A   
Sbjct: 91  ALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149

Query: 919 TSLSLVRVL 927
            +L +V +L
Sbjct: 150 GNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (279), Expect = 9e-28
 Identities = 47/284 (16%), Positives = 91/284 (32%), Gaps = 62/284 (21%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
                + A +     +   +L   +    TD +  TALH A + GH   V+ L+   +  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLG 63

Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
           V    +N  ++ G SPLH AA  G   I++ LL  GA+    N+   TPL  A   N   
Sbjct: 64  V---PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 672 VAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRP 731
           +A +L                                    ++ +  +            
Sbjct: 121 IAVMLLEGG--------------------------------ANPDAKD------HYDATA 142

Query: 732 RNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESR 791
            +    K   ++  ++              S   +  +        C + + +  +    
Sbjct: 143 MHRAAAKGNLKMVHILLFY---------KASTNIQDTEGNTPLHLACDEERVEEAKF--- 190

Query: 792 PVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINI 835
            +  +  +I I N +  T L +A   G   L+   +    + ++
Sbjct: 191 -LVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (255), Expect = 2e-24
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
            +++  G T LH AA   R ++  ++LE GA+ +++D    + +H AA +G+  ++ +LL
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
              AS N+ D EGNT LHLA +       K L+          +I   N +  +PL  A 
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA------SIYIENKEEKTPLQVAK 213

Query: 636 RWGYTSIIQLLLDHGANP 653
             G   +I   L  G   
Sbjct: 214 --GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.4 bits (245), Expect = 4e-23
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N  +  G++ LHIA S G  ++V+ L+   A +N V +    TPLH A   N   I  
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAV 123

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           +LL     N +A+D+   TA+H AA   +  +  +LL   A   I++  G T LH+A   
Sbjct: 124 MLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

Query: 919 TSLSLVRVL 927
             +   + L
Sbjct: 183 ERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.4 bits (219), Expect = 8e-20
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  N +G T LH A S   +++  +L+   A+ +        T +H A    NL +V 
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVH 156

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
           +LL   + + N QD  GNT LH A        A  L+  GA   I+N   +T L +A+
Sbjct: 157 ILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 40/249 (16%)

Query: 624 NNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL---N 677
                   + A       + + +L   +  T  ++   T L  A    +  + + L    
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKY----LDY-SDVNEANISNVNVREGVRPR 732
             V+                        +D      L   +      I    + +G    
Sbjct: 64  VPVND-----------------------KDDAGWSPLHIAASAGXDEIVKALLVKGAHV- 99

Query: 733 NITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP 792
           N         L      N  ++              D+        A  K ++       
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI-- 157

Query: 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
           +     + NI +++G T LH+A      +  + L+   A I I  + ++ TPL +A    
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKGGL 216

Query: 853 NLSIVRLLL 861
              ++   L
Sbjct: 217 G--LILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 450 NYKKISSLTKLFEFARLGDGDKVRAILQ---EENKKEDSESLPLCHPLCSCDDCEEAINL 506
           N    +  T L   A     +    +L+     + K+  ++  +     +     + +++
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH--RAAAKGNLKMVHI 157

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
                  +T   D  G T LH+A    R++    ++  GA    ++    +PL  A   G
Sbjct: 158 LLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--G 214

Query: 567 HQNVLLLLLHSGASINL 583
              ++L  L  G   ++
Sbjct: 215 GLGLILKRLAEGEEASM 231

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  119 bits (300), Expect = 3e-30
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL------------TPLH 846
                   G++ALHIA        V+LL+   AD+++    +               PL 
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 847 IACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAI----------------NNHT 888
           +A       +V  LL    +  ++ A D  GNT LH   +                +   
Sbjct: 142 LAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL 201

Query: 889 NLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +   L  +    +I NH G T L +A +   + + R +
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  115 bits (290), Expect = 6e-29
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 42/177 (23%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-------------LCGCSPLHYAATR 565
             +G + LH+A     ++ V L++E GAD + +                G  PL  AA  
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 566 GHQNVLLLLL---HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
              +V+  LL   H  AS+  TD+ GNT LH                             
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD---------------------- 184

Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
            N+  +S L      G   +   L        + N + +TPL+ A     + + + +
Sbjct: 185 -NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (260), Expect = 6e-25
 Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 30/162 (18%)

Query: 783 EDVVESESRPVTDECLNINICNSDGYTALHIA---TSLGHYDLVRLLINYRADINIVTRV 839
             ++E           +     S G T L  A      G    +  L+    D      +
Sbjct: 19  TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78

Query: 840 KQ----------LTPLHIACQNNNLSIVRLLLAAKQCNVNAQD-------------YRGN 876
                        + LHIA +  +L  V+LL+     +V+ +              Y G 
Sbjct: 79  VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGE 137

Query: 877 TALHYAAINNHTNLATLLLKSG---ARPQIKNHYGQTCLHMA 915
             L  AA     ++ T LL++    A  +  +  G T LH  
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 94.5 bits (235), Expect = 1e-21
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 19/130 (14%)

Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLI---NYRADINIVTR--------------- 838
             +   C   G   L +A     +D+V  L+   +  A +                    
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185

Query: 839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
             + + L I   +  L +   L           +++G T L  AA      +   +L+  
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 899 ARPQIKNHYG 908
                 +H+ 
Sbjct: 245 FSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 86.8 bits (215), Expect = 6e-19
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 25/141 (17%)

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELG---ADTNSQDLCGCSPLHYAA 563
                +    +    G   L +AA   +  VV  +LE     A   + D  G + LH   
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 564 T----------------RGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
                             G   +   L  +     +++++G T L LA   G     + +
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 608 IYFNEQEVLNLNINAVNNQGD 628
           +   ++E    +  A ++   
Sbjct: 241 L---QREF---SGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 33/152 (21%)

Query: 809 TALHIATSLGHYDLVRLLINY------RADINIVTRVKQ-LTPLHIA---CQNNNLSIVR 858
             L    S G  + +  L+ Y          +  T      T L  A    Q+   + + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 859 LLLAA----------KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA--------- 899
            LL                   + Y+G++ALH A          LL+++GA         
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 900 ----RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
                     ++G+  L +A       +V  L
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 19/108 (17%)

Query: 588 GNTALHLATNNGHETCVKALIYF--NEQEVLNLNINAVNNQGDSPLHAAA---RWGYTSI 642
               L    + G    +  L+ +     + L  +     + G + L  A    + G  + 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 643 IQLLLDHG-----------ANPTLENKRKVTPLQNA---NNLHVAKLL 676
           I  LL              A  T E  +  + L  A    +L   KLL
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (300), Expect = 4e-30
 Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 34/176 (19%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD--------------LCGCSPLHYAAT 564
             +G T LH+A     + +V L++E GAD  +                  G  PL  AA 
Sbjct: 98  YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157

Query: 565 RGHQNVLLLLLHSG---ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL--- 618
                ++  LL +    A I+  D+ GNT LH        T        +    + +   
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 619 -------NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
                       N +G +PL  AA  G   ++  +L    +       +      A
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (280), Expect = 2e-27
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 50/205 (24%)

Query: 519 DDRGFTVLHVAAL---YGRIKVVDLVLELGADT-----------NSQDLCGCSPLHYAAT 564
            + G T L  A L    G+   + L+L++   T                 G + LH A  
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 565 RGHQNVLLLLLHSGASINLTDNE--------------GNTALHLATNNGHETCVKALIYF 610
           R +  ++ LL+ +GA +    N               G   L LA        VK L+  
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL-- 168

Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWG---------YTSIIQLLLDHGAN-------PT 654
            +      +I+A ++ G++ LHA               TS+   +L  GA          
Sbjct: 169 -QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 655 LENKRKVTPLQNA---NNLHVAKLL 676
           + N++ +TPL  A     + V   +
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (256), Expect = 3e-24
 Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 32/148 (21%)

Query: 799 NINICNSD-GYTALHIAT---SLGHYDLVRLLINYRADINIVTRV----------KQLTP 844
           +    + + G T L  A      G  D + LL++     + + +           K  T 
Sbjct: 45  DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTA 104

Query: 845 LHIACQNNNLSIVRLLLAAKQCNVNAQD--------------YRGNTALHYAAINNHTNL 890
           LHIA +  N+++V LL+     +V A                Y G   L  AA  N   +
Sbjct: 105 LHIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 891 ATLLLKSG---ARPQIKNHYGQTCLHMA 915
              LL++    A    ++  G T LH  
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 94.1 bits (234), Expect = 3e-21
 Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 26/135 (19%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQNNNLS 855
                   G   L +A       +V+ L+      ADI+    V   T LH   +  + +
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN-TVLHALVEVADNT 198

Query: 856 IVRLLLAAKQCN---------------VNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
           +          N                   + +G T L  AA +    +   +L+    
Sbjct: 199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI- 257

Query: 901 PQIKNHYGQTCLHMA 915
                 +   C H A
Sbjct: 258 ------HEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.7 bits (220), Expect = 1e-19
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 33/166 (19%)

Query: 544 LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS-------GASINLTDNE-GNTALHLA 595
           + A      L     +  A  + +   L  LL                D E G T L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 596 T---NNGHETCVKALIYF-----NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
               +NG    +  L+       + ++ +N +      +G + LH A      +++ LL+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 648 DHGAN--------------PTLENKRKVTPLQNA---NNLHVAKLL 676
           ++GA+                        PL  A   N L + K L
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 32/140 (22%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELG---ADTNSQDLCGCSPLHYAATRGHQNV----- 570
              G   L +AA   ++ +V  +L+     AD +++D  G + LH         V     
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204

Query: 571 ------LLL-----LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLN 619
                  +L     L  +     +T+ +G T L LA ++G    +  ++   ++E+    
Sbjct: 205 VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL---QREI---- 257

Query: 620 INAVNNQGDSPLHAAARWGY 639
                       HAAA   +
Sbjct: 258 ------HEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.9 bits (218), Expect = 3e-19
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 34/163 (20%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYR-------ADINIVTRVKQLTPLHIA--- 848
                      ++  A +  +   +  L+ +         D          T L  A   
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 849 CQNNNLSIVRLLLAAKQ----------CNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
             N     + LLL   +           +     Y+G TALH A    +  L TLL+++G
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 899 A--------------RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           A              + +   ++G+  L +A     L++V+ L
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 40/303 (13%), Positives = 87/303 (28%), Gaps = 66/303 (21%)

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLD-------HGANPTL-ENKRKVTPLQNANNL 670
                       +  A        ++ LL           +    + +   T L      
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCL------ 58

Query: 671 HVAKLLNAYVHK--PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREG 728
             A L            L +     + + +  +   T   Y   + ++ A I   N+   
Sbjct: 59  LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA-IERRNM--- 114

Query: 729 VRPRNITEIKKVEQLFALIENN---EIKLIKSYFGLSNEEKVPDNACHPLCQCAKC-KED 784
                +  +        L+EN    +      +F  +           PL   A   +  
Sbjct: 115 ----TLVTL--------LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

Query: 785 VVE---SESRPVTDECLNINICNSDGYTALHIATSLGHYDLVR---------LLINYRAD 832
           +V+     S    D    I+  +S G T LH    +    +            ++   A 
Sbjct: 163 IVKFLLQNSWQPAD----ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218

Query: 833 INIVTRVKQ------LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886
           ++   ++++      LTPL +A  +  + ++  +L         ++       H AA ++
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REIHEPECRHAAAHHH 270

Query: 887 HTN 889
           H +
Sbjct: 271 HHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 23/99 (23%)

Query: 519 DDRGFTVLHVAALYGR---------IKVVDLVLELGADTNSQ-------DLCGCSPLHYA 562
           D  G TVLH                  + + +L LGA  +         +  G +PL  A
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHE 601
           A+ G   VL  +L                 H A ++ H 
Sbjct: 241 ASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
           + +G T L +AA  G+I V+  +L+                H AA   H +
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHHHH 273

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* Length = 267

 Score =  117 bits (295), Expect = 1e-29
 Identities = 45/268 (16%), Positives = 104/268 (38%), Gaps = 17/268 (6%)

Query: 158 ASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQ 217
            S+ N        D L  E   K       ++IK F+++      +P +K   +V++ + 
Sbjct: 1   GSMENTDVFLGLHDFL--ERMRKPSAGDFVKSIKSFIVSFSNNAPDP-EKDCAMVQEFFS 57

Query: 218 NCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKM 277
                             ++  +DS    +E Y+   ++  +    T     ++  F KM
Sbjct: 58  KMEAAFRAHPLWS---GCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKM 114

Query: 278 IRNLSDIQLKDLDIREDLYD--TVPRARSEISHIDCYSTILGKIGCVRRCISAISK--ED 333
                 I  ++LDI+    +  +   A+ E+  I+ Y     K+ C+  C   I+    +
Sbjct: 115 SLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLN 174

Query: 334 TRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITS 393
                  N    D+ LP+++++ +K   P   ++L Y++++      +  + + ++  T+
Sbjct: 175 ASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR---ESKLVGEAAYFFTN 231

Query: 394 LEASIEHIK----SGLLIGPSEPEALMS 417
           + ++   I       + +  +E E  M 
Sbjct: 232 ILSAESFISNIDAKSISLDEAEFEKNME 259

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  110 bits (278), Expect = 4e-29
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 2/94 (2%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           +G T LH+A   GH ++V+LL+   AD+N   +  + TPLH+A +N +L +V+LLL A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG- 58

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
            +VNA+D  G T LH AA N H  +  LLL++GA
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  107 bits (271), Expect = 3e-28
 Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
           G +PLH AA  GH  V+ LLL +GA +N  D  G T LHLA  NGH   VK L+   E  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG 58

Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
               ++NA +  G +PLH AAR G+  +++LLL+ GA
Sbjct: 59  A---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  103 bits (260), Expect = 9e-27
 Identities = 45/87 (51%), Positives = 56/87 (64%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI 581
           G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 582 NLTDNEGNTALHLATNNGHETCVKALI 608
           N  D  G T LHLA  NGH   VK L+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.0 bits (235), Expect = 2e-23
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
           TPLH+A +N +L +V+LLL     +VNA+D  G T LH AA N H  +  LLL++GA   
Sbjct: 4   TPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVL 927
            K+  G+T LH+A +   L +V++L
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLL 647
           G T LHLA  NGH   VK L+   E      ++NA +  G +PLH AAR G+  +++LLL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL---EAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 648 DHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           + GA+   ++K   TPL  A    +L V KLL
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  + +G T LH+A   GH ++V+LL+   AD+N   +  + TPLH+A +N +L +V+
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 85

Query: 859 LLLAA 863
           LLL A
Sbjct: 86  LLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 2e-13
 Identities = 32/61 (52%), Positives = 41/61 (67%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
           D  G T LH+AA  G ++VV L+LE GAD N++D  G +PLH AA  GH  V+ LLL +G
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 579 A 579
           A
Sbjct: 92  A 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.6 bits (138), Expect = 4e-10
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           G T LH AA N H  +  LLL++GA    K+  G+T LH+A +   L +V++L
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
           ++N  + +G T LH+A   GH ++V+LL+   A
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A Length = 274

 Score =  114 bits (287), Expect = 2e-28
 Identities = 48/274 (17%), Positives = 108/274 (39%), Gaps = 22/274 (8%)

Query: 153 ENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLV 212
            + +  SI   +  ++ I+ L       +  +++ +  K+FL           ++Q    
Sbjct: 3   HHHHHHSIETDRVSKEFIEFL---KTFHKTGQEIYKQTKLFLEGMHYKRDLSIEEQSECA 59

Query: 213 EKLYQNCLNICLKDNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDA 272
           +  Y N         +++    +    ++ I   +E Y+   +YK +    T     +D 
Sbjct: 60  QDFYHNVAE------RMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDL 113

Query: 273 QFNKMIRNLSDIQLKDLDIREDLY-----DTVPRARSEISHIDCYSTILGKIGCVRRCIS 327
              K IR L  +  + L +  +       D V +A ++I  +D       K+ C+ +C  
Sbjct: 114 AIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK 173

Query: 328 AISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQD 387
            I   +     +    + DD LP ++++V+K   P   +++ Y+ +F     S +   +D
Sbjct: 174 HIF--NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCN--PSRLMTGED 229

Query: 388 SFLITSLEASIEHIK----SGLLIGPSEPEALMS 417
            +  T+L  ++  I+      L +   + +  MS
Sbjct: 230 GYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS 263

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  112 bits (281), Expect = 9e-28
 Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 35/206 (16%)

Query: 474 AILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG 533
           A+L     + D+  + L        +  E IN          + +  RG T LH+A    
Sbjct: 53  ALLNLSAGRNDTIPI-LLDIAEKTGNMREFINSP-------FRDVYYRGQTALHIAIERR 104

Query: 534 RIKVVDLVLELGADTNSQD--------------LCGCSPLHYAATRGHQNVLLLLL---H 576
               V+L++E GAD ++Q                 G  PL  AA     +++  L    H
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNL---NINA-------VNNQ 626
             A +   D+ GNT LH        T           ++L +    +         +NN 
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGAN 652
           G SPL  AA+ G   I Q ++     
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  109 bits (273), Expect = 1e-26
 Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 31/160 (19%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQL-------------TPL 845
                   G TALHIA        V LL+   AD++   R +                PL
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 846 HIACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAINNH---------TNLATLL 894
            +A   N   IV  L     KQ ++  QD RGNT LH                T +  LL
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 895 LKSGAR-------PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           L   A+         + N+ G + L MA +   + + + +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  108 bits (272), Expect = 2e-26
 Identities = 39/205 (19%), Positives = 65/205 (31%), Gaps = 50/205 (24%)

Query: 519 DDRGFTVLHVAAL---YGRIKVVDLVLELGADT-----------NSQDLCGCSPLHYAAT 564
              G T L  A L    GR   + ++L++   T                 G + LH A  
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

Query: 565 RGHQNVLLLLLHSGASINLTDN--------------EGNTALHLATNNGHETCVKALIYF 610
           R  ++ + LL+  GA ++                   G   L LA        V  L   
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT-- 160

Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWG---------YTSIIQLLLDHGAN-------PT 654
            E      ++   +++G++ LHA               T +  LLL   A          
Sbjct: 161 -ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219

Query: 655 LENKRKVTPLQNA---NNLHVAKLL 676
           L N   ++PL  A     + + + +
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 86.8 bits (215), Expect = 6e-19
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 33/152 (21%)

Query: 558 PLHYAATRG----HQNVLLLLLHSGASINLTD----NEGNTALHLATNN---GHETCVKA 606
            L    +RG     + +L  LL     +   +    + G T L  A  N   G    +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 607 LIYF-----NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKV 661
           L+       N +E +N     V  +G + LH A        ++LL++ GA+   + + + 
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 662 --------------TPLQNA---NNLHVAKLL 676
                          PL  A   N  H+   L
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 30/150 (20%)

Query: 808 YTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---LTPLHIACQNNN---LSIVRLLL 861
           +  +   +  G   L+  L+ ++  +      +     T L  A  N +      + +LL
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 862 AAKQC----------NVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN------ 905
              +                 YRG TALH A      +   LL++ GA    +       
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129

Query: 906 --------HYGQTCLHMAQQMTSLSLVRVL 927
                   ++G+  L +A       +V  L
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.9 bits (192), Expect = 6e-16
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 19/129 (14%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQNNN-- 853
           +       G   L +A       +V  L      +AD+         T LH      +  
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN-TVLHALVAIADNT 190

Query: 854 -------LSIVRLLLA------AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
                    +  LLL                +  G + L  AA      +   +++    
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

Query: 901 PQIKNHYGQ 909
               +H+  
Sbjct: 251 DAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 20/91 (21%)

Query: 519 DDRGFTVLHVAALYG---------RIKVVDLVLELGADTNS-------QDLCGCSPLHYA 562
           D RG TVLH                 K+ DL+L   A            +  G SPL  A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

Query: 563 ATRGHQNVLLLLLHSGASINLTDNEGNTALH 593
           A  G   +   ++    +    D   +   H
Sbjct: 233 AKTGKIGIFQHIIRREIA----DAAAHHHHH 259

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  104 bits (263), Expect = 6e-27
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 814 ATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDY 873
            +S  H+     L+   + +           L  A +      VR+L+A    +V A+D 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDK 55

Query: 874 RGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            G+T LH AA N H  +  LLL++GA    ++ +G+T   ++    +  L  +L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (253), Expect = 1e-25
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 529 AALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEG 588
            + +        ++  G+   S        L  AA  G  + + +L+ +GA +   D  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
           +T LHLA  NGH   VK L+   E      ++ A +  G +    +   G   + ++L
Sbjct: 58  STPLHLAARNGHLEVVKLLL---EAGA---DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.0 bits (245), Expect = 2e-24
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 562 AATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN 621
            ++  H +    L+  G+ +    ++    L  A   G +  V+ L+          ++ 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILM---ANGA---DVA 51

Query: 622 AVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           A +  G +PLH AAR G+  +++LLL+ GA+   ++K   T    +    N  +A++L
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 92.6 bits (231), Expect = 1e-22
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
            SD    L  A   G  D VR+L+   AD+    +    TPLH+A +N +L +V+LLL  
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLL-E 78

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLL 894
              +V AQD  G TA   +  N + +LA +L
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 90.7 bits (226), Expect = 5e-22
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
                  L  AA  G+   V +++  GAD  ++D  G +PLH AA  GH  V+ LLL +G
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKAL 607
           A +   D  G TA  ++ +NG+E   + L
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++   + +G T LH+A   GH ++V+LL+   AD+    +  + T   I+  N N  +  
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNEDLAE 107

Query: 859 LL 860
           +L
Sbjct: 108 IL 109

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  110 bits (277), Expect = 1e-26
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 519 DDRGFTVLHVAALYGRIK----VVDLVLELGADTNSQDLCGCSPLHYAATRGH------- 567
           D+ G + L  A              L+  L      +D    + LH+             
Sbjct: 161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA 220

Query: 568 -----QNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
                  ++  ++        +      +     N   +  +   +  + + ++   +NA
Sbjct: 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL--DLKWIIANMLNA 278

Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
            ++ GD+ L+ AAR G  SI+  LLD+GA+P + NK  + P+   
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  106 bits (266), Expect = 4e-25
 Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 39/320 (12%)

Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL-H 593
           +K++  +     + N Q +   + L        Q +   L +  ++ N      N    H
Sbjct: 43  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102

Query: 594 LATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
           ++ ++  +    A           LN+N  V+  G++PLH         +++ L+ HG+N
Sbjct: 103 VSFDSLLQEVNDAFP------NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156

Query: 653 PTLENKRKVTPLQNANNLHVAKLLNAYVHKPKP-LYNYLVPKEKVSRPPSPPPTQDKYLD 711
               +    + L  A      K +N Y       L +YL                     
Sbjct: 157 RLYGDNMGESCLVKA-----VKSVNNYDSGTFEALLDYL--------------------- 190

Query: 712 YSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNA 771
           Y  +   +  N  +   +   +             ++     ++K        +   +  
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMT-GCSAAAKYYLDILMGWIVKK--QNRPIQSGTNEK 247

Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
                     ++D +             +N  +S+G T L+IA  LG+  +V  L++Y A
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307

Query: 832 DINIVTRVKQLTPLHIACQN 851
           D  I  +   L P+      
Sbjct: 308 DPFIANK-SGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 94.3 bits (234), Expect = 4e-21
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 21/198 (10%)

Query: 499 DCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCS 557
           + +E     ++ S               HV+      +V D       + N   D  G +
Sbjct: 74  EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133

Query: 558 PLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA---TNNGHETCVKALIYFNEQE 614
           PLH+  +  +  ++  L+  G++    DN G + L  A    NN      +AL+     +
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL-----D 188

Query: 615 VLNLNINAVNNQGDSPLH------------AAARWGYTSIIQLLLDHGANPTLENKRKVT 662
            L   +   ++   + LH            AAA++    ++  ++     P      +  
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 663 PLQNANNLHVAKLLNAYV 680
              N  N      +   +
Sbjct: 249 SKPNDKNGERKDSILENL 266

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 94.3 bits (234), Expect = 5e-21
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 14/134 (10%)

Query: 799 NINICNSDGYTALHIATSLGHYD------------LVRLLINYRADINIVTRVKQLTPLH 846
            + + +S   T LH                     L+  ++  +         ++ +  +
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 847 IACQNNNLSIVRLL--LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK 904
                   SI+  L         +NAQD  G+T L+ AA   + ++   LL  GA P I 
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312

Query: 905 NHYGQTCLHMAQQM 918
           N  G   +     +
Sbjct: 313 NKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.0 bits (228), Expect = 3e-20
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 798 LNINIC-NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN--- 853
           LN+NI  +  G T LH  TS+ + +LV+ L+ + ++          + L  A ++ N   
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYD 179

Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN------------LATLLLKSGARP 901
                 LL      +  +D    T LH+  I +               L   ++K   RP
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239

Query: 902 QIKNHYGQTCLHMA 915
                  +      
Sbjct: 240 IQSGTNEKESKPND 253

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.8 bits (199), Expect = 2e-16
 Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 22/133 (16%)

Query: 519 DDRGFTVLHVAALYGRIK------------VVDLVLELGADTNSQDLCGCSPLHYAATRG 566
           D    T+LH   +   +             ++  +++                       
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 567 HQN----VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA 622
            ++     L L       +N  D+ G+T L++A   G+ + V AL+          +   
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD------YGADPFI 311

Query: 623 VNNQGDSPLHAAA 635
            N  G  P+   A
Sbjct: 312 ANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 76.6 bits (188), Expect = 5e-15
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 2/113 (1%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
                  L         ++   L N  ++ N           H++  +    +       
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 864 KQCNVNAQ-DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           +  N+N   D  GNT LH+     +  L   L+K G+     ++ G++CL  A
Sbjct: 120 Q-LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 72.4 bits (177), Expect = 1e-13
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 20/148 (13%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVR----LLINYRADINIVTRVKQLTPLHIACQNNN- 853
           N    ++ G + L  A    +         LL      + +   + + T LH     +  
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR-TILHHIIITSGM 214

Query: 854 ----------LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ- 902
                     L I+   +  KQ            +          +     L        
Sbjct: 215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274

Query: 903 ---IKNHYGQTCLHMAQQMTSLSLVRVL 927
               ++  G TCL++A ++ ++S+V  L
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 500 CEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR---IKVVDLVLELGADTNSQDLCGC 556
            +  +     +     QS  +   +  +      +   ++ +DL   +    N+QD  G 
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284

Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA 595
           + L+ AA  G+ +++  LL  GA   + +  G   +   
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 462 EFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDR 521
            +AR    D    +       +  +   L        D  E I L +           + 
Sbjct: 118 RYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH---------EP 168

Query: 522 GFTVLHVAALYG---RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
             T LH+A        + +VD +++   + + Q   G + LHY     +   L LLL   
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 579 ASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           ASI + +  G T L +A    HE C + L              A++ + +S +H    W 
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELL------------TQALSGRFNSHVHVEYEWR 276

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 79.7 bits (196), Expect = 2e-16
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 843 TPLHIACQNNNLSIVRL--LLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
           T LH+A ++ + + + +   L     N++ Q  +G+TALHY  + ++     LLL+  A 
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +I N  G+T L +A+++       +L
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 77.3 bits (190), Expect = 1e-15
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 796 ECLNINICNSDGYTALHIATSLG---HYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
           E + +   +    TALH+A          +V  L+    +++  T  K  T LH  C  +
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALHYCCLTD 216

Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL--KSGARPQIKN 905
           N   ++LLL  K  ++   +  G T L  A    H +   LL    SG      +
Sbjct: 217 NAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.8 bits (173), Expect = 2e-13
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 534 RIKVVDLVLELGADTNSQDLC------GCSPLHYAATRGHQN---VLLLLLHSGASINLT 584
            I  +      G D   +           + LH A     +    ++  L+ +  +++  
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201

Query: 585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQ 644
             +G+TALH      +  C+K L+          +I   N  G++PL  A R  +    +
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLL------RGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 645 LLLDHGAN 652
           LL    + 
Sbjct: 256 LLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 16/189 (8%)

Query: 686 LYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFA 745
           +    +P E     P+P        DY        +    R   R ++     K+  L  
Sbjct: 84  IMECCLPSE-DPVKPNPGSDMIARKDY------ITAKYMERRYARKKHADTAAKLHSLCE 136

Query: 746 LIENNEIKLIKSYFGLSNEEKVPDNA-------CHPLCQCAKCKEDVVESESRPVTDECL 798
            ++  +I  +   +    +                 L    +  +         +     
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N++     G TALH      + + ++LL+  +A I I     + TPL IA +  +     
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHCEE 255

Query: 859 LLLAAKQCN 867
           LL  A    
Sbjct: 256 LLTQA-LSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 562 AATRGHQNVLLLLLHSGASINLTDN------EGNTALHLATNNGHETCVKALIYFNEQEV 615
           A        LL     G  +              TALHLA  +   T +  +    +  V
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV----DFLV 192

Query: 616 LN-LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLH 671
            N  N++    +G + LH          ++LLL   A+  + N+   TPL  A    + H
Sbjct: 193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252

Query: 672 VAKLLNAY 679
             +LL   
Sbjct: 253 CEELLTQA 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 84.5 bits (208), Expect = 2e-17
 Identities = 31/175 (17%), Positives = 50/175 (28%), Gaps = 4/175 (2%)

Query: 455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT 514
             +             + +     E+         L              +     +   
Sbjct: 168 PPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVN 227

Query: 515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL 574
             +      T L  A     +   + +L+ GA+ N  D  G  PLH+A   GH  +  L 
Sbjct: 228 WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287

Query: 575 LHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS 629
           L  GA +   D+EG   L +A    +   V  L        +     A    GD 
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLL----RLAKMREAEAAQGQAGDE 338

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 82.1 bits (202), Expect = 9e-17
 Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 2/142 (1%)

Query: 787 ESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN-IVTRVKQLTPL 845
               R   +           G      +        +   + + AD+N +       TPL
Sbjct: 180 PGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPL 239

Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
             A   N+L     LL     NVN  D  G   LH+A I  HT LA L LK GA    ++
Sbjct: 240 IQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298

Query: 906 HYGQTCLHMAQQMTSLSLVRVL 927
             G+  L +A +  +  +V +L
Sbjct: 299 SEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
             D  T L  AT+         L+   A++N      +  PLH A    +  +  L L  
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR-GPLHHATILGHTGLACLFLKR 290

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
              ++ A+D  G   L  A    + ++ TLL  +  R
Sbjct: 291 G-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N+N  +S G   LH AT LGH  L  L +   AD+       +  PL IA +  N  IV 
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR-DPLTIAMETANADIVT 318

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT 892
           LL  AK     A   +     +     + + +A+
Sbjct: 319 LLRLAKMREAEAAQGQAGDETYLDIFRDFSLMAS 352

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 11/127 (8%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGASINLT--DNEGNTALHLATNNGHETCVKALIYFNE 612
           G      +        +   L  GA +N      +  T L  AT        + L+    
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL---- 255

Query: 613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL---QNANN 669
                 N+N  ++ G  PLH A   G+T +  L L  GA+    +     PL       N
Sbjct: 256 --QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313

Query: 670 LHVAKLL 676
             +  LL
Sbjct: 314 ADIVTLL 320

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 18/164 (10%)

Query: 481 KKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDR---GFTVLHVAALYGRIK- 536
           ++   E   L   +C+ D         + Q         D       VLH+A        
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 537 --VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL 594
             +VD +++ G   +++   G + LHYAA     + L LLL   A +   +  G TAL +
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG 638
           A    H+ C + L              A       PLH    W 
Sbjct: 266 ARKKHHKECEELL------------EQAQAGTFAFPLHVDYSWV 297

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 79.3 bits (195), Expect = 4e-16
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 843 TPLHIACQNNN---LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
             LH+A +  N   L +V  ++     +++A+   GNTALHYAA+ N  +   LLLK  A
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250

Query: 900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
                N  G+T L +A++        +L
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 74.3 bits (182), Expect = 2e-14
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 15/127 (11%)

Query: 535 IKVVDLVLELGADTNSQDLC------GCSPLHYAATRGHQNVLL---LLLHSGASINLTD 585
           +  V      G D                 LH A    +Q  L     ++ +G  ++   
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223

Query: 586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQL 645
            +GNTALH A       C+K L+           +  VN  G++ L  A +  +    +L
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLL------KGRALVGTVNEAGETALDIARKKHHKECEEL 277

Query: 646 LLDHGAN 652
           L    A 
Sbjct: 278 LEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.6 bits (175), Expect = 1e-13
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 14/134 (10%)

Query: 767 VPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH---YDLV 823
           + +     + +     +D  +    P            +     LH+A  + +     LV
Sbjct: 159 ICNRDLLSVLEAFANGQDFGQPLPGPDA---------QAPEELVLHLAVKVANQASLPLV 209

Query: 824 RLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA 883
             +I     ++        T LH A   N    ++LLL  +   V   +  G TAL  A 
Sbjct: 210 DFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIAR 267

Query: 884 INNHTNLATLLLKS 897
             +H     LL ++
Sbjct: 268 KKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 27/191 (14%)

Query: 686 LYNYLVPKEKVSRPPSPPPT-------QDKYLDYSDVNEANISNVNVREGVRPRNITEIK 738
           +    +P     +P +             KY+++            +   +  R++  + 
Sbjct: 109 VMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVL 168

Query: 739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECL 798
              + FA  ++             + +   +   H   + A          S P+ D  +
Sbjct: 169 ---EAFANGQDFG-----QPLPGPDAQAPEELVLHLAVKVAN-------QASLPLVDFII 213

Query: 799 ----NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNL 854
               +++   +DG TALH A      D ++LL+  RA +  V      T L IA + ++ 
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHK 272

Query: 855 SIVRLLLAAKQ 865
               LL  A+ 
Sbjct: 273 ECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 556 CSPLHYAATRGHQNVLLLLLHSGASINLTDNE------GNTALHLATNNGHETCVKALIY 609
              L  A        +L    +G                   LHLA    ++  +  +  
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV-- 209

Query: 610 FNEQEVLN-LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA 667
             +  + N  +++A    G++ LH AA +     ++LLL   A     N+   T L  A
Sbjct: 210 --DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 843 TPLHIACQN---NNLSIVRLLLAAKQ--CNVNAQDYRGNTALHYAAINNHTNLATLLLKS 897
             LH+A +     +L +V  ++   Q   +++A+   GNTALHYAA+ N  +   LLLK 
Sbjct: 173 LVLHLAVKVANQASLPLVDFII---QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229

Query: 898 GARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP 932
            A     N  G+T L +A++        +L     
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 15/122 (12%)

Query: 559 LHYAATRGHQNVLLLLLHSGASINLTDNE------GNTALHLATNNGHET---CVKALIY 609
           L  A        +L    +G                   LHLA    ++     V  +I 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 610 FNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANN 669
                    +++A    G++ LH AA +     ++LLL   A     N+   T L  A  
Sbjct: 196 NG------GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249

Query: 670 LH 671
            H
Sbjct: 250 KH 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 2e-13
 Identities = 49/340 (14%), Positives = 100/340 (29%), Gaps = 91/340 (26%)

Query: 27  MESTYDEDLSENIFFKALKTEHGELFEKATQDGWIICIPRVCSLPKYALTYEDFFNHILI 86
              T   D  +++  K L     +L  +          PR  S+   A +  D       
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-----TNPRRLSI--IAESIRDGLATW-- 344

Query: 87  PSEELPETHFRTLNDQEIRICNRIISIEADGGSTFSTQILFEETYYTDEMLK-YKVLCID 145
                   +++ +N  ++     II          S  +L        E  K +  L + 
Sbjct: 345 -------DNWKHVNCDKL---TTIIES--------SLNVL-----EPAEYRKMFDRLSV- 380

Query: 146 NPLDINLENTNDASISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPF 205
            P   +        I     L   +  +W +    ++   +++  K  L+     E    
Sbjct: 381 FPPSAH--------IP-TILL--SL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKES--- 424

Query: 206 DKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLI-------DSIKLAVETY-----MHH 253
                 +  +Y         +  L +SI ++ Y I       D I   ++ Y      HH
Sbjct: 425 ---TISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 254 GIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIRED---------LYDTVPRARS 304
                 +K I          F  +  +   ++ K   IR D         + +T+ + + 
Sbjct: 481 ------LKNIEH--PERMTLFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKF 529

Query: 305 EISHI----DCYSTILGKIGC-VRRCISAISKEDTRDKLQ 339
              +I      Y  ++  I   + +    +      D L+
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 3e-13
 Identities = 103/635 (16%), Positives = 189/635 (29%), Gaps = 186/635 (29%)

Query: 129 ETYYTDEMLKYKVLCIDNPLDINLENTNDASISNIQTLRDCIDLLWT-ESKGKEIFEK-M 186
           +     +M K  +L     +D  + + +  S     TLR    L WT  SK +E+ +K +
Sbjct: 34  DCKDVQDMPK-SILS-KEEIDHIIMSKDAVS----GTLR----LFWTLLSKQEEMVQKFV 83

Query: 187 DEAIKM---FLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDN---------------K 228
           +E +++   FL++  + E     +Q  ++ ++Y    +    DN               K
Sbjct: 84  EEVLRINYKFLMSPIKTEQ----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 229 LRQSISINKYLIDSIKLAVETYMHHGIY---KTLIKGITACTALEDAQFNKMIRNLSD-- 283
           LRQ++     L  +  + +      G+    KT         AL+     K+   +    
Sbjct: 140 LRQAL---LELRPAKNVLI-----DGVLGSGKT-------WVALDVCLSYKVQCKMDFKI 184

Query: 284 --IQLK-------DLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDT 334
             + LK        L++ + L             ID   T         +    +     
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLL----------YQIDPNWTSRSDHSSNIK----LRIHSI 230

Query: 335 RDKLQGNIITVDDLLPMIVF---LVVKCALPN-WIAHLTYMKQFHFSQSSNVC----IDQ 386
           + +L+        LL    +   L+V   L N    +      F+ S     C      +
Sbjct: 231 QAELR-------RLLKSKPYENCLLV---LLNVQ--NAKAWNAFNLS-----CKILLTTR 273

Query: 387 DSFLITSLEA------SIEHIKSGLLIGPSEPEAL------MSYDDQEELANAKFKPTV- 433
              +   L A      S++H    L   P E ++L          D          P   
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRL 330

Query: 434 -----EMSDLTTQLKVYNKYNNYKKI----SSLTKLFE------FARLG----DGD---K 471
                 + D       +   N  K      SSL  L        F RL            
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 472 VRAILQEENKKEDSES-LPLCHP--LCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHV 528
           + +++  +  K D    +   H   L      E  I++  S        +++     LH 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENE--YALHR 447

Query: 529 AAL--YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL------------- 573
           + +  Y   K  D   +L      Q        H       + + L              
Sbjct: 448 SIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 574 LLHSGASINLTDNEGNTAL-------HLATNNGH-ETCVKALIYFNEQEVLNLNINAVNN 625
           + H   + N + +  NT         ++  N+   E  V A++ F    +  +  N +  
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF----LPKIEENLIC- 561

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660
              S         YT ++++ L        E   K
Sbjct: 562 ---SK--------YTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 5e-10
 Identities = 83/612 (13%), Positives = 180/612 (29%), Gaps = 175/612 (28%)

Query: 277 MIRNLSDIQLKDLDIREDLYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRD 336
           M     + Q +  DI     D        + + DC                     D +D
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAF------VDNFDCK--------------------DVQD 40

Query: 337 KLQGNIIT---VDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITS 393
             + +I++   +D ++             + ++    +     S+   +      F+   
Sbjct: 41  MPK-SILSKEEIDHII----------MSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEV 86

Query: 394 LEASIEHIKSGLLIGPSEPEALM-SYDDQ-EELANA--KFKP-TVEMSDLTTQLKVYNKY 448
           L  + + + S +     +P  +   Y +Q + L N    F    V       +L+     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----- 141

Query: 449 NNYKKISSLTKLFEFARLGDGDKVRAI--LQEENKKEDSE------SLPLCHPLCSCDDC 500
               ++     +     LG G    A+        +   +      +L  C+   S +  
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---SPETV 198

Query: 501 EEAINLKHSQSKPTTQSMDDRGFTV-LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPL 559
            E +     Q  P   S  D    + L + ++   ++                       
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----------------------- 235

Query: 560 HYAATRGHQNVLLLLLH--SGASIN----------LTDNEGNTALHLATNNGHETCVKAL 607
               ++ ++N LL+LL+  +  + N           T  +  T    A    H +     
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 608 IYFNEQEVLNLNINAVNNQGD---------SPLHAAARWGYTSIIQLLLDHGANPTLENK 658
           +     EV +L +  ++ +           +P          SII   +  G   T +N 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-------LSIIAESIRDGLA-TWDNW 347

Query: 659 RKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEA 718
           + V    N + L             +   N L P E           +  +   S     
Sbjct: 348 KHV----NCDKLT---------TIIESSLNVLEPAE----------YRKMFDRLSVFPP- 383

Query: 719 NISNVNVREGV--------RPRNITEIKKVEQL--FALIENNEIKLIKSYFGLSNEEKVP 768
              + ++   +           ++  +  V +L  ++L+E    +   S   +  E KV 
Sbjct: 384 ---SAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 769 ---DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIA---TSLGHYDL 822
              + A H           +V+  + P T +  ++     D Y   HI     ++ H + 
Sbjct: 439 LENEYALH---------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 823 V----RLLINYR 830
           +     + +++R
Sbjct: 490 MTLFRMVFLDFR 501

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 6e-05
 Identities = 65/380 (17%), Positives = 113/380 (29%), Gaps = 90/380 (23%)

Query: 593 HLATNNG-HETCVKALIYFNEQE-VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
           H+    G H+   K ++   E   V N +   V    D P    ++     II       
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMS----- 57

Query: 651 ANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK-EKVSRPPSPPPTQDKY 709
            +      R    L +     V K +   V +    Y +L+   +   R PS       Y
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEE-VLRIN--YKFLMSPIKTEQRQPSMM--TRMY 112

Query: 710 LDYSDVNEANISNVNVREGVRPRNITEIKKVEQL-FALIENNEIKLIKSY----FG---L 761
           ++  D     + N N        N++ ++   +L  AL+E    K +        G   +
Sbjct: 113 IEQRD----RLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 762 SNE-------EKVPDNACH--PLCQCAKCKEDVVESESRPVTDECLNI--NIC-NSDGYT 809
           + +       +   D       L  C    E V+E     +      I  N    SD  +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLE----MLQKLLYQIDPNWTSRSDHSS 221

Query: 810 ALHIATSLGHYDLVRLLIN--YRADINI---VTRVKQLTPLHIACQ----NNNLSIVRLL 860
            + +       +L RLL +  Y   + +   V   K     +++C+         +   L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
            AA   +++   +     L          + +LLLK               L    Q   
Sbjct: 282 SAATTTHISLDHHSM--TLT------PDEVKSLLLK--------------YLDCRPQD-- 317

Query: 921 LSLVRVLTHEA----PFVLK 936
                 L  E     P  L 
Sbjct: 318 ------LPREVLTTNPRRLS 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	936
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2efe_A	267	Similarity to vacuolar protein sorting-associated	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-53  Score=489.04  Aligned_cols=389  Identities=29%  Similarity=0.385  Sum_probs=344.3

Q ss_pred             ccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHH
Q psy8454         452 KKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAAL  531 (936)
Q Consensus       452 ~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  531 (936)
                      .+..+.|+|+.|+..|++++|++|++.+.+.+.                                 ++..|.||||+|+.
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---------------------------------~~~~~~t~L~~A~~   56 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNV---------------------------------SNVKVETPLHMAAR   56 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCC---------------------------------SSSCCCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC---------------------------------CCCCCCCHHHHHHH
Confidence            456788999999999999999999999865432                                 56789999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcc
Q psy8454         532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN  611 (936)
Q Consensus       532 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~  611 (936)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+
T Consensus        57 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  136 (437)
T 1n11_A           57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE  136 (437)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             cccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccC
Q psy8454         612 EQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV  691 (936)
Q Consensus       612 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~  691 (936)
                            .+.+..+..|.||||+|++.|+.+++++|+++|++++..+..|.|||++|+..+..++++.++..+....    
T Consensus       137 ------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----  206 (437)
T 1n11_A          137 ------ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH----  206 (437)
T ss_dssp             ------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC----
T ss_pred             ------CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----
Confidence                  4567788899999999999999999999999999999999999999999999999999988874332210    


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCC-C
Q psy8454         692 PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD-N  770 (936)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~-~  770 (936)
                                                                .....+.++|+.|+..|+.+++++|++.+.+.+... .
T Consensus       207 ------------------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  244 (437)
T 1n11_A          207 ------------------------------------------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  244 (437)
T ss_dssp             ------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ------------------------------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence                                                      111234568999999999999999999988776543 4


Q ss_pred             CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454         771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ  850 (936)
Q Consensus       771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~  850 (936)
                      ..+|++.+......   .+.+++++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus       245 g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~  320 (437)
T 1n11_A          245 GVTPLHLAAQEGHA---EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT-RMGYTPLHVASH  320 (437)
T ss_dssp             CCCHHHHHHHTTCH---HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-SSCCCHHHHHHH
T ss_pred             CCCHHHHHHHCCCH---HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCC-CCCCCHHHHHHH
Confidence            56677766544332   23456788999999999999999999999999999999999999999998 899999999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      .|+.++|++|+++| +++|.+|..|+||||+|+++|+.++|++|+++||+++.+|..|+||+++|++.|+.+++++|...
T Consensus       321 ~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~  399 (437)
T 1n11_A          321 YGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  399 (437)
T ss_dssp             SSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence            99999999999998 99999999999999999999999999999999999999999999999999999999999999643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.3e-51  Score=467.83  Aligned_cols=365  Identities=28%  Similarity=0.375  Sum_probs=324.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454         514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH  593 (936)
Q Consensus       514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  593 (936)
                      .++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454         594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA  673 (936)
Q Consensus       594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~  673 (936)
                      +|+..|+.++|++|++++      ++++..+..|.||||+|++.|+.+++++|++.|++.+..+..|.|||++|+..+..
T Consensus        86 ~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENN------ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhCC------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999976      57788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454         674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK  753 (936)
Q Consensus       674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~  753 (936)
                      ++++.++..+....                                              ..+..+.++|+.|+..|+.+
T Consensus       160 ~~v~~Ll~~g~~~~----------------------------------------------~~~~~g~t~L~~A~~~~~~~  193 (437)
T 1n11_A          160 RVAELLLERDAHPN----------------------------------------------AAGKNGLTPLHVAVHHNNLD  193 (437)
T ss_dssp             HHHHHHHHTTCCTT----------------------------------------------CCCSSCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCCCCC----------------------------------------------CCCCCCCCHHHHHHHcCCHH
Confidence            99988874432210                                              11123456899999999999


Q ss_pred             HHHHHhcCCcCCCCCC-CCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8454         754 LIKSYFGLSNEEKVPD-NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRAD  832 (936)
Q Consensus       754 ~vk~Ll~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~  832 (936)
                      ++++|++.+.+..... ...+|++.+......   ...+.+++.|.+++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       194 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~---~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  270 (437)
T 1n11_A          194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV---EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN  270 (437)
T ss_dssp             HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence            9999999988875543 456677766554332   334577889999999999999999999999999999999999999


Q ss_pred             cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHH
Q psy8454         833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL  912 (936)
Q Consensus       833 v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L  912 (936)
                      ++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.+|+.++|++|+++|++++.+|..|.|||
T Consensus       271 ~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L  348 (437)
T 1n11_A          271 GNLGN-KSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL  348 (437)
T ss_dssp             TTCCC-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            99998 89999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         913 HMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       913 ~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      |+|+..|+.++|++|+++|+.+.
T Consensus       349 ~~A~~~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          349 HQAAQQGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHCChHHHHHHHHHCcCCCC
Confidence            99999999999999999998753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.5e-43  Score=391.92  Aligned_cols=301  Identities=26%  Similarity=0.326  Sum_probs=267.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDL-CGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN  598 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~  598 (936)
                      ..|.|+||.|++.|++++|++|+++|+++|.++. .|+||||+|+..|+.++|++|+++|++++.++..+.++++.++..
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            3478999999999999999999999999998875 599999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHH
Q psy8454         599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA  678 (936)
Q Consensus       599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~  678 (936)
                      +...++..++..+      .+++..+..|.|||++|+..|+.+++++|+++|++++..+.....+.              
T Consensus       103 ~~~~~~~~~~~~~------~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~--------------  162 (337)
T 4g8k_A          103 GSVKLLKLFLSKG------ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE--------------  162 (337)
T ss_dssp             TCHHHHHHHHTTT------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------------------
T ss_pred             ccchhhHHhhhcc------chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc--------------
Confidence            9999999999855      67899999999999999999999999999999999876543221110              


Q ss_pred             hhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHH
Q psy8454         679 YVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSY  758 (936)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~L  758 (936)
                                                                             .....+.+||+.|+..|+.+++++|
T Consensus       163 -------------------------------------------------------~~~~~g~T~L~~A~~~g~~~~v~~L  187 (337)
T 4g8k_A          163 -------------------------------------------------------RLRKGGATALMDAAEKGHVEVLKIL  187 (337)
T ss_dssp             --------------------------------------------------------CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred             -------------------------------------------------------cccCCCCcHHHHHHHCCCHHHHHHH
Confidence                                                                   0111234578888999999999998


Q ss_pred             hcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCcc
Q psy8454         759 FGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH----YDLVRLLINYRADIN  834 (936)
Q Consensus       759 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~----~~~v~~LL~~g~~v~  834 (936)
                      ++                                  ..|+++|..+..|.|+++.++..+.    ..++++|+++|++++
T Consensus       188 L~----------------------------------~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n  233 (337)
T 4g8k_A          188 LD----------------------------------EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN  233 (337)
T ss_dssp             HH----------------------------------HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT
T ss_pred             Hh----------------------------------ccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC
Confidence            84                                  2467789999999999998877654    468899999999999


Q ss_pred             cccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHH
Q psy8454         835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHM  914 (936)
Q Consensus       835 ~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~  914 (936)
                      .++ ..|.||||+|+..|+.+++++|++.+++++|.+|..|+||||+|++.|+.++|++|+++||++|.+     |||++
T Consensus       234 ~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~  307 (337)
T 4g8k_A          234 VRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMT  307 (337)
T ss_dssp             CCC-GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHH
T ss_pred             CcC-CCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHH
Confidence            998 899999999999999999999999877999999999999999999999999999999999998764     59999


Q ss_pred             HHHcCCHHHHHHHhhhCCCcC
Q psy8454         915 AQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       915 A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      |+++|+.++|++|+++|+.+.
T Consensus       308 A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          308 ARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             HHHTTCHHHHHHHHHTTCCC-
T ss_pred             HHHcCCHHHHHHHHHCcCCCC
Confidence            999999999999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.9e-42  Score=383.65  Aligned_cols=311  Identities=27%  Similarity=0.330  Sum_probs=281.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT  596 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~  596 (936)
                      .+..|.|+||.|++.|+.+.++.|+.. +++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            344578999999999999999888875 9999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL  676 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll  676 (936)
                      ..|+.+++++|++++      ++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+|++++...+..+.+
T Consensus       100 ~~g~~~iv~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~  173 (351)
T 3utm_A          100 SYGHYEVTELLLKHG------ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL  173 (351)
T ss_dssp             HTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred             HCCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence            999999999999865      57888999999999999999999999999999999999999999999999877766665


Q ss_pred             HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454         677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK  756 (936)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk  756 (936)
                      ....                                                          ...++..++..++.+.++
T Consensus       174 ~~~~----------------------------------------------------------~~~~~~~~~~~~~~~~~~  195 (351)
T 3utm_A          174 TYEF----------------------------------------------------------KGHSLLQAAREADLAKVK  195 (351)
T ss_dssp             HHHH----------------------------------------------------------HHHHHHHHHHTTCHHHHH
T ss_pred             Hhhh----------------------------------------------------------cccHHHHHHHhccHHHHH
Confidence            4433                                                          335678889999999999


Q ss_pred             HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCc
Q psy8454         757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL---GHYDLVRLLINYRADI  833 (936)
Q Consensus       757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~---g~~~~v~~LL~~g~~v  833 (936)
                      .++.....                                   ....+..|.||||+|+..   +..+++++|+++|+++
T Consensus       196 ~~l~~~~~-----------------------------------~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          196 KTLALEII-----------------------------------NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHTTTCCT-----------------------------------TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             HHHHhhcc-----------------------------------cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence            88864321                                   123467899999999999   5689999999999999


Q ss_pred             ccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHH
Q psy8454         834 NIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH  913 (936)
Q Consensus       834 ~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~  913 (936)
                      +..+ ..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+||++
T Consensus       241 ~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~  318 (351)
T 3utm_A          241 NEKN-KDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ  318 (351)
T ss_dssp             TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCcC-CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence            9998 89999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHhhhCCC
Q psy8454         914 MAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       914 ~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +|    +.+++++|.++++.
T Consensus       319 ~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          319 MG----NEAVQQILSESTPM  334 (351)
T ss_dssp             HS----CHHHHHHHHHC---
T ss_pred             hh----hHHHHHHHHhcccc
Confidence            98    77999999888764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.3e-42  Score=380.19  Aligned_cols=301  Identities=25%  Similarity=0.281  Sum_probs=258.7

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      .+.++|+.|+++|++++|+.||+.|++.+..                                .+..|.||||+|+..|+
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~--------------------------------~~~~g~TpLh~A~~~g~   71 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------------------------------EEEGGWTPLHNAVQMSR   71 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC--------------------------------CTTTCCCHHHHHHHTTC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCcc--------------------------------CCCCCcCHHHHHHHcCC
Confidence            4578999999999999999999999875432                                23458999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454         535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE  614 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~  614 (936)
                      .++|++|+++|++++.++..+.++++.++..+...++..+++.+++++..|..|.||+|+|+..|+.+++++|+++|+..
T Consensus        72 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~  151 (337)
T 4g8k_A           72 EDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV  151 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987542


Q ss_pred             cc----ccCcccccCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccc
Q psy8454         615 VL----NLNINAVNNQGDSPLHAAARWGYTSIIQLLLD-HGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNY  689 (936)
Q Consensus       615 ~~----~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~  689 (936)
                      ..    ....+..+..|.||||+|++.|+.+++++|++ .|++++..+..|.|+++.++...                  
T Consensus       152 ~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~------------------  213 (337)
T 4g8k_A          152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS------------------  213 (337)
T ss_dssp             TCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS------------------
T ss_pred             chhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc------------------
Confidence            21    12234566789999999999999999999995 69999999999999998763200                  


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCC
Q psy8454         690 LVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPD  769 (936)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~  769 (936)
                                                                               ...+...++++|+          
T Consensus       214 ---------------------------------------------------------~~~~~~~i~~lLl----------  226 (337)
T 4g8k_A          214 ---------------------------------------------------------DDSDVEAITHLLL----------  226 (337)
T ss_dssp             ---------------------------------------------------------CTTTHHHHHHHHH----------
T ss_pred             ---------------------------------------------------------CcccHHHHHHHHH----------
Confidence                                                                     0011123444444          


Q ss_pred             CCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCcccccccCCCcHHHHH
Q psy8454         770 NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRVKQLTPLHIA  848 (936)
Q Consensus       770 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~-g~~v~~~~~~~g~TpLh~A  848 (936)
                                               +.|+++|.++..|.||||+|+..|+.+++++|++. |++++.++ ..|.||||+|
T Consensus       227 -------------------------~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d-~~G~TpL~~A  280 (337)
T 4g8k_A          227 -------------------------DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLA  280 (337)
T ss_dssp             -------------------------HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC-TTSCBHHHHH
T ss_pred             -------------------------HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC-CCCCCHHHHH
Confidence                                     56778899999999999999999999999999975 89999999 8999999999


Q ss_pred             HhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCc
Q psy8454         849 CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK  904 (936)
Q Consensus       849 ~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~  904 (936)
                      ++.|+.++|++|+++| +|+|.+     ||||+|+++|+.++|++|+++||++|..
T Consensus       281 ~~~g~~~iv~~Ll~~G-Ad~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          281 VELKLKKIAELLCKRG-ASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HHTTCHHHHHHHHTTS-CSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HHcCCHHHHHHHHHCC-CCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            9999999999999999 888764     5999999999999999999999999864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-41  Score=363.09  Aligned_cols=270  Identities=26%  Similarity=0.328  Sum_probs=245.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC
Q psy8454         521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG  599 (936)
Q Consensus       521 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g  599 (936)
                      +|.|+||.|++.|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            4789999999999999999999999999988 788999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHh
Q psy8454         600 HETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAY  679 (936)
Q Consensus       600 ~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~  679 (936)
                      +.+++++|++++      .+++..+..|.||||+|++.|+.+++++|+++|++++..+....                  
T Consensus        84 ~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~------------------  139 (285)
T 1wdy_A           84 SVKLLKLFLSKG------ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE------------------  139 (285)
T ss_dssp             CHHHHHHHHHTT------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH------------------
T ss_pred             CHHHHHHHHHcC------CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH------------------
Confidence            999999999865      57888999999999999999999999999999998775432100                  


Q ss_pred             hcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHh
Q psy8454         680 VHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYF  759 (936)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll  759 (936)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (285)
T 1wdy_A          140 --------------------------------------------------------------------------------  139 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCcccccc
Q psy8454         760 GLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTR  838 (936)
Q Consensus       760 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~-g~~v~~~~~  838 (936)
                                                             +.+..+..|.||||.|+..|+.+++++|+++ |++++..+ 
T Consensus       140 ---------------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-  179 (285)
T 1wdy_A          140 ---------------------------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD-  179 (285)
T ss_dssp             ---------------------------------------HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-
T ss_pred             ---------------------------------------HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC-
Confidence                                                   0123367788999999999999999999987 99999888 


Q ss_pred             cCCCcHHHHHHhCCC----HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCcccCCCcHHH
Q psy8454         839 VKQLTPLHIACQNNN----LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK-SGARPQIKNHYGQTCLH  913 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~----~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~  913 (936)
                      ..|.||||+|+..|+    .+++++|++.| ++++.+|..|.||||+|++.|+.++|++|++ +|++++.+|..|+||||
T Consensus       180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~  258 (285)
T 1wdy_A          180 NMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL  258 (285)
T ss_dssp             TTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHH
Confidence            889999999999999    89999999998 9999999999999999999999999999998 89999999999999999


Q ss_pred             HHHHcCCHHHHHHHhhhCCCcC
Q psy8454         914 MAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       914 ~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      +|++.|+.+++++|+++|+.+.
T Consensus       259 ~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          259 LAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHcCcHHHHHHHHHcCCCCC
Confidence            9999999999999999998763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-40  Score=355.09  Aligned_cols=266  Identities=30%  Similarity=0.379  Sum_probs=242.7

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      .+.++|+.|++.|+.++|++|++.+.+....                                .+..|.||||+|+..|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------------------------~~~~g~t~L~~A~~~g~   51 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------------------------------EEEGGWTPLHNAVQMSR   51 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--------------------------------CTTTCCCHHHHHHHTTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccc--------------------------------cCCCCCcHHHHHHHcCC
Confidence            4568999999999999999999998764332                                36679999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454         535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE  614 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~  614 (936)
                      .+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++.  
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--  129 (285)
T 1wdy_A           52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA--  129 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999763  


Q ss_pred             ccccCcccc----------cCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCC
Q psy8454         615 VLNLNINAV----------NNQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKP  683 (936)
Q Consensus       615 ~~~~~~~~~----------~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~  683 (936)
                          +++..          +..|.||||.|++.|+.+++++|++. |++++                             
T Consensus       130 ----~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------  176 (285)
T 1wdy_A          130 ----NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-----------------------------  176 (285)
T ss_dssp             ----CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-----------------------------
T ss_pred             ----CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-----------------------------
Confidence                44444          77899999999999999999999986 66543                             


Q ss_pred             CccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCc
Q psy8454         684 KPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSN  763 (936)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~  763 (936)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (285)
T 1wdy_A          177 --------------------------------------------------------------------------------  176 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCccccccc
Q psy8454         764 EEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH----YDLVRLLINYRADINIVTRV  839 (936)
Q Consensus       764 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~----~~~v~~LL~~g~~v~~~~~~  839 (936)
                                                            ..+..|.||||.|+..|+    .+++++|+++|++++..+ .
T Consensus       177 --------------------------------------~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~-~  217 (285)
T 1wdy_A          177 --------------------------------------ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-E  217 (285)
T ss_dssp             --------------------------------------CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC-T
T ss_pred             --------------------------------------ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC-C
Confidence                                                  446678888899998888    999999999999999998 8


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCccc
Q psy8454         840 KQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH  906 (936)
Q Consensus       840 ~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~  906 (936)
                      .|.||||+|+..|+.+++++|++..+++++.+|..|+||||+|++.|+.+++++|+++||+++.+|.
T Consensus       218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999954499999999999999999999999999999999999998873

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-41  Score=375.92  Aligned_cols=134  Identities=26%  Similarity=0.344  Sum_probs=124.8

Q ss_pred             cccCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCcccc-------cccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCC
Q psy8454         800 INICNSDGYTALHIATSLG---HYDLVRLLINYRADINIV-------TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVN  869 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g---~~~~v~~LL~~g~~v~~~-------~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn  869 (936)
                      ++..+..|.||||+|+..|   +.+++++|+++|++++..       .+..|.||||+|+..|+.++|++|++.+++++|
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD  307 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence            5667889999999999998   899999999999999862       126899999999999999999999999889999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         870 AQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       870 ~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      .+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+.+|+.++|++|+++++.
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.4e-39  Score=355.70  Aligned_cols=327  Identities=25%  Similarity=0.269  Sum_probs=257.4

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+.++|+.|++.|+.+.|+.++.....                                .++.++..|.||||+|+..|
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~d~~g~t~L~~A~~~g   69 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNV--------------------------------NCHASDGRKSTPLHLAAGYN   69 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTT--------------------------------TCCCSSTTCCCHHHHHHHTT
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCC--------------------------------CcccCCCCCCCHHHHHHHcC
Confidence            3456799999999999999999976322                                23347888999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++  
T Consensus        70 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--  147 (351)
T 3utm_A           70 RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG--  147 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK  693 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~  693 (936)
                          ++++..+..|.||++.|+..+..+.+.+....            .++..++..+....+..++.....        
T Consensus       148 ----~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~--------  203 (351)
T 3utm_A          148 ----ADPTLVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREADLAKVKKTLALEII--------  203 (351)
T ss_dssp             ----CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTCHHHHHHHTTTCCT--------
T ss_pred             ----CCCccccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhccHHHHHHHHHhhcc--------
Confidence                57788899999999998877777776665542            234444444444444444311100        


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHc---CcHHHHHHHhcCCcCCCCCCC
Q psy8454         694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIEN---NEIKLIKSYFGLSNEEKVPDN  770 (936)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~---g~~~~vk~Ll~~~~~~~~~~~  770 (936)
                                                            .......+.++++.|+..   +..+++++|++          
T Consensus       204 --------------------------------------~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~----------  235 (351)
T 3utm_A          204 --------------------------------------NFKQPQSHETALHCAVASLHPKRKQVAELLLR----------  235 (351)
T ss_dssp             --------------------------------------TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH----------
T ss_pred             --------------------------------------cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH----------
Confidence                                                  000112233577788877   55788887775          


Q ss_pred             CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454         771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ  850 (936)
Q Consensus       771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~  850 (936)
                                               .|+++|.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus       236 -------------------------~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~t~L~~A~~  289 (351)
T 3utm_A          236 -------------------------KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD-SLGQTALHRAAL  289 (351)
T ss_dssp             -------------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHH
T ss_pred             -------------------------cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHH
Confidence                                     456678899999999999999999999999999999999999 899999999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC
Q psy8454         851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS  920 (936)
Q Consensus       851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~  920 (936)
                      .|+.++|++|+++| ++++.+|..|+||+++|    +.+++++|.+.+..   ....+.+++..|++.|.
T Consensus       290 ~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~gd  351 (351)
T 3utm_A          290 AGHLQTCRLLLSYG-SDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAGD  351 (351)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred             cCcHHHHHHHHHcC-CCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccCC
Confidence            99999999999999 99999999999999998    67899999987653   34567899999998874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=349.13  Aligned_cols=258  Identities=28%  Similarity=0.364  Sum_probs=209.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcC-----------CCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCC
Q psy8454         519 DDRGFTVLHVAALYGRIKVVDLVLELG-----------ADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNE  587 (936)
Q Consensus       519 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~  587 (936)
                      ...|.|+||+|+..|+.+.+..++..+           ...+..|..|+||||+|+..|+.+++++|++.|++++.+|..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            456899999999999977766655432           235678889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454         588 GNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA  667 (936)
Q Consensus       588 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  667 (936)
                      |.||||+|+..|+.+++++|++++      ++++..+..|.||||+|+..|+.+++++|+++|++++.            
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------  153 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHG------AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------------  153 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC------------
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC------------
Confidence            999999999999999999999865      67889999999999999999999999999999876542            


Q ss_pred             hchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHH
Q psy8454         668 NNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALI  747 (936)
Q Consensus       668 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai  747 (936)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (285)
T 3d9h_A          154 --------------------------------------------------------------------------------  153 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8454         748 ENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLI  827 (936)
Q Consensus       748 ~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL  827 (936)
                                                                              +..|.||||+|+..|+.+++++|+
T Consensus       154 --------------------------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll  177 (285)
T 3d9h_A          154 --------------------------------------------------------ESDLASPIHEAARRGHVECVNSLI  177 (285)
T ss_dssp             --------------------------------------------------------SCTTSCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------------------------------------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                                                    224789999999999999999999


Q ss_pred             hCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccC
Q psy8454         828 NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY  907 (936)
Q Consensus       828 ~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~  907 (936)
                      ++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++. |..|.||||+|++.|+.++|++|+++|++++.+|..
T Consensus       178 ~~g~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~  254 (285)
T 3d9h_A          178 AYGGNIDHKI-SHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE  254 (285)
T ss_dssp             HTTCCTTCCB-TTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            9999999998 89999999999999999999999998 99995 889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhh-CCCcC
Q psy8454         908 GQTCLHMAQQMTSLSLVRVLTHE-APFVL  935 (936)
Q Consensus       908 g~T~L~~A~~~g~~~iv~~Ll~~-~~~~~  935 (936)
                      |+||||+|+  ++.+++++|+++ ++.+.
T Consensus       255 g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          255 GKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             SCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            999999999  457999999988 65543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.3e-39  Score=360.24  Aligned_cols=267  Identities=22%  Similarity=0.242  Sum_probs=232.1

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454         514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH  593 (936)
Q Consensus       514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  593 (936)
                      ..+..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            3455788899999999999999999999999999999999999999999999999999999999996654  47899999


Q ss_pred             HHHHcCcHHHHHHHHhccccc----c-----------cccCcccccCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCc
Q psy8454         594 LATNNGHETCVKALIYFNEQE----V-----------LNLNINAVNNQGDSPLHAAARWG--YTSIIQLLLDHGANPTLE  656 (936)
Q Consensus       594 ~A~~~g~~eiv~~Ll~~~~~~----~-----------~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~  656 (936)
                      +|+..|+.++|++|++.+...    .           ....++..+..|.||||+|+..|  +.+++++|+++|++++  
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~--  167 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT--  167 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT--
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc--
Confidence            999999999999999973221    0           11223348889999999999999  9999999999887654  


Q ss_pred             ccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhh
Q psy8454         657 NKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITE  736 (936)
Q Consensus       657 d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (936)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (364)
T 3ljn_A          168 --------------------------------------------------------------------------------  167 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHH
Q psy8454         737 IKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATS  816 (936)
Q Consensus       737 ~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~  816 (936)
                                                                                       ..|..|.||||+|+.
T Consensus       168 -----------------------------------------------------------------~~d~~g~t~L~~A~~  182 (364)
T 3ljn_A          168 -----------------------------------------------------------------AKDKADETPLMRAME  182 (364)
T ss_dssp             -----------------------------------------------------------------CCCTTSCCHHHHHHH
T ss_pred             -----------------------------------------------------------------ccCCCCCCHHHHHHH
Confidence                                                                             336678899999999


Q ss_pred             cCCHHHHHHHHhCCCC-----cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy8454         817 LGHYDLVRLLINYRAD-----INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA  891 (936)
Q Consensus       817 ~g~~~~v~~LL~~g~~-----v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv  891 (936)
                      .|+.+++++|+++|++     ++..+ ..|.||||+|+..|+.++|++|+++| +|+|.+|..|+||||+|++.|+.++|
T Consensus       183 ~g~~~~v~~Ll~~g~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g~~~~v  260 (364)
T 3ljn_A          183 FRNREALDLMMDTVPSKSSLRLDYAN-KQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLT  260 (364)
T ss_dssp             TTCHHHHHHHHHHCSCSSSCCTTCCC-TTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTCCHHHH
T ss_pred             cCCHHHHHHHHhcccccccccccccC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHH
Confidence            9999999999999998     88888 89999999999999999999999998 99999999999999999999999999


Q ss_pred             HHHHHcCCCCcC------------cccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         892 TLLLKSGARPQI------------KNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       892 ~~LL~~Ga~~~~------------~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      ++|+++|++++.            .+..|+||++.|+..|+.+.+..|+.++
T Consensus       261 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             HHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            999999877533            5677899999999999887777776554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.5e-38  Score=337.39  Aligned_cols=269  Identities=22%  Similarity=0.218  Sum_probs=208.2

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+.++||.|+..|+.+.+..++..+.......      .              +  .....+.++..|.||||+|+..|
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~------~--------------l--~~~~~~~~~~~g~t~L~~Aa~~g   70 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI------R--------------L--LSNPLMGDAVSDWSPMHEAAIHG   70 (285)
T ss_dssp             -----------------------------CCSE------E--------------C--CCCTTCSSSCCSCCHHHHHHHTT
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccch------h--------------h--hhCcccCCCccCCCHHHHHHHcC
Confidence            356789999999999999998887765432210      0              0  00123458889999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      +.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++. 
T Consensus        71 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-  149 (285)
T 3d9h_A           71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA-  149 (285)
T ss_dssp             CHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999763 


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK  693 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~  693 (936)
                           +++. +..|.||||+|++.|+.+++++|+++|++++                                       
T Consensus       150 -----~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------------  184 (285)
T 3d9h_A          150 -----SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID---------------------------------------  184 (285)
T ss_dssp             -----CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTT---------------------------------------
T ss_pred             -----CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------------
Confidence                 4443 3459999999999999999999999887644                                       


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454         694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH  773 (936)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~  773 (936)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (285)
T 3d9h_A          185 --------------------------------------------------------------------------------  184 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC
Q psy8454         774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN  853 (936)
Q Consensus       774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~  853 (936)
                                                  ..+..|.||||+|+..|+.+++++|+++|++++. + ..|.||||+|+..|+
T Consensus       185 ----------------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~-~~g~t~L~~A~~~~~  234 (285)
T 3d9h_A          185 ----------------------------HKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G-KGQDSPLHAVVRTAS  234 (285)
T ss_dssp             ----------------------------CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-C-BTTBCHHHHHHHTTC
T ss_pred             ----------------------------CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-C-CCCCCHHHHHHHcCC
Confidence                                        3366788999999999999999999999999995 5 789999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcC
Q psy8454         854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS-GARPQI  903 (936)
Q Consensus       854 ~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~-Ga~~~~  903 (936)
                      .+++++|+++| ++++.+|..|+||||+|+  ++.+++++|+++ |+++..
T Consensus       235 ~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          235 EELACLLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            99999999998 999999999999999999  557999999998 887653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.2e-38  Score=332.17  Aligned_cols=216  Identities=30%  Similarity=0.363  Sum_probs=167.4

Q ss_pred             HhCcHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHH
Q psy8454         564 TRGHQNVLLLLLHSGASINL-TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI  642 (936)
Q Consensus       564 ~~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~i  642 (936)
                      ..++.+++++|++.|++++. .|..|.||||+|+..|+.++|++|++++      ++++..+..|.||||+|+..|+.++
T Consensus        32 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~  105 (253)
T 1yyh_A           32 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS------ADANIQDNMGRTPLHAAVSADAQGV  105 (253)
T ss_dssp             --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             cCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            34477777888877777754 4677788888888888888888888754      4667777778888888888888888


Q ss_pred             HHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccc
Q psy8454         643 IQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISN  722 (936)
Q Consensus       643 v~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  722 (936)
                      +++|++.|..                                                                      
T Consensus       106 v~~Ll~~~~~----------------------------------------------------------------------  115 (253)
T 1yyh_A          106 FQILIRNRAT----------------------------------------------------------------------  115 (253)
T ss_dssp             HHHHHHSTTS----------------------------------------------------------------------
T ss_pred             HHHHHHcCCC----------------------------------------------------------------------
Confidence            8888876541                                                                      


Q ss_pred             cccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCccc
Q psy8454         723 VNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI  802 (936)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~  802 (936)
                                                                                                  +++.
T Consensus       116 ----------------------------------------------------------------------------~~~~  119 (253)
T 1yyh_A          116 ----------------------------------------------------------------------------DLDA  119 (253)
T ss_dssp             ----------------------------------------------------------------------------CTTC
T ss_pred             ----------------------------------------------------------------------------Cccc
Confidence                                                                                        1244


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454         803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA  882 (936)
Q Consensus       803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A  882 (936)
                      .+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A  197 (253)
T 1yyh_A          120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLA  197 (253)
T ss_dssp             CCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence            46778899999999999999999999999999988 89999999999999999999999998 99999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      ++.|+.+++++|+++|++++.+|..|+||+++|+++|+.+|+++|....+.
T Consensus       198 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             HHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-38  Score=357.02  Aligned_cols=285  Identities=22%  Similarity=0.266  Sum_probs=231.2

Q ss_pred             hhhhhhhHHHhhhhhc-ccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCC
Q psy8454         436 SDLTTQLKVYNKYNNY-KKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT  514 (936)
Q Consensus       436 ~~~~~~~~~~~~l~~~-~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (936)
                      ++..+..++.+.+... .+..+.++|+.|+..|+ ++++.|+..                                   .
T Consensus        73 ~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~-----------------------------------~  116 (373)
T 2fo1_E           73 NDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE-----------------------------------S  116 (373)
T ss_dssp             ---------------------CCCHHHHHHHSSS-CCCSCCSTT-----------------------------------T
T ss_pred             CCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc-----------------------------------c
Confidence            3445666666654433 35577889999998554 566555432                                   2


Q ss_pred             cccCC-CCCCcHHHHHHHcCCHHHHHHHH--------hcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC
Q psy8454         515 TQSMD-DRGFTVLHVAALYGRIKVVDLVL--------ELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD  585 (936)
Q Consensus       515 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d  585 (936)
                      ++..+ ..|.||||+|+..|+.+++++|+        +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~  196 (373)
T 2fo1_E          117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN  196 (373)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence            23355 67999999999999998887776        7899999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhC---CHHHHHHHHHCCCCCCCcccCCCC
Q psy8454         586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWG---YTSIIQLLLDHGANPTLENKRKVT  662 (936)
Q Consensus       586 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~ga~~~~~d~~g~t  662 (936)
                      ..|.||||+|+..|+.+++++|++++.   .+.+++..+..|.||||+|+..|   +.+++++|+++|++++..+.    
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~----  269 (373)
T 2fo1_E          197 KSERSALHQAAANRDFGMMVYMLNSTK---LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA----  269 (373)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHH---HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG----
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCc---cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc----
Confidence            999999999999999999999998652   23578889999999999999998   89999999999988765321    


Q ss_pred             hhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHH
Q psy8454         663 PLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ  742 (936)
Q Consensus       663 ~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (936)
                                                                                                      
T Consensus       270 --------------------------------------------------------------------------------  269 (373)
T 2fo1_E          270 --------------------------------------------------------------------------------  269 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDL  822 (936)
Q Consensus       743 l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~  822 (936)
                                                                             ...+..+..|.||||+|+..|+.++
T Consensus       270 -------------------------------------------------------~~~~~~d~~g~t~Lh~A~~~g~~~~  294 (373)
T 2fo1_E          270 -------------------------------------------------------ARKDSEKYKGRTALHYAAQVSNMPI  294 (373)
T ss_dssp             -------------------------------------------------------GGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             -------------------------------------------------------cccCcccccCCCHHHHHHHhCCHHH
Confidence                                                                   0024457889999999999999999


Q ss_pred             HHHHHhCC-CCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         823 VRLLINYR-ADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       823 v~~LL~~g-~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      +++|+++| ++++..+ ..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.+|+.++|++|+++|++
T Consensus       295 v~~Ll~~~~~~~n~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          295 VKYLVGEKGSNKDKQD-EDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHSCCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHHhcCCCccCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999876 9999999 89999999999999999999999998 99999999999999999999999999999999886

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-37  Score=335.41  Aligned_cols=265  Identities=27%  Similarity=0.305  Sum_probs=195.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy8454         516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGAD---TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTAL  592 (936)
Q Consensus       516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L  592 (936)
                      +.+|..|.||||+|+..|+.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            45788899999999999999999999999888   788889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhH
Q psy8454         593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHV  672 (936)
Q Consensus       593 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~  672 (936)
                      |+|+..|+.+++++|++.++..      ....  ..+                ++..+.  ......+.++++.+..   
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~------~~~~--~~~----------------~~~~~~--~~~~~~~~~~~~~~~~---  133 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSH------PRDA--SDT----------------YLTQSQ--DCTPDTSHAPAAVDSQ---  133 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSS------CCCC------------------------------------------------
T ss_pred             HHHHHcCCcchhHhhhccCCCC------chhh--HHH----------------Hhhccc--ccCcchhcchhhhccc---
Confidence            9999999999999999866321      1000  000                000000  0011111222221110   


Q ss_pred             HHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcH
Q psy8454         673 AKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEI  752 (936)
Q Consensus       673 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~  752 (936)
                                                                                                  .+..
T Consensus       134 ----------------------------------------------------------------------------~~~~  137 (282)
T 1oy3_D          134 ----------------------------------------------------------------------------PNPE  137 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0000


Q ss_pred             HHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8454         753 KLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRAD  832 (936)
Q Consensus       753 ~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~  832 (936)
                                                        ......+...+++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       138 ----------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  183 (282)
T 1oy3_D          138 ----------------------------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD  183 (282)
T ss_dssp             ----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ----------------------------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                              0011134455677899999999999999999999999999999999


Q ss_pred             cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHH
Q psy8454         833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL  912 (936)
Q Consensus       833 v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L  912 (936)
                      ++..+...|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|++.|+.+++++|+++||+++.+|..|.||+
T Consensus       184 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  262 (282)
T 1oy3_D          184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC  262 (282)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------
T ss_pred             CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccc
Confidence            99998556999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q psy8454         913 HMAQQMTS  920 (936)
Q Consensus       913 ~~A~~~g~  920 (936)
                      ++|.....
T Consensus       263 ~~a~~~~~  270 (282)
T 1oy3_D          263 SSSGSDSD  270 (282)
T ss_dssp             --------
T ss_pred             cccCCccc
Confidence            99987654

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A

Probab=100.00  E-value=2.8e-37  Score=321.70  Aligned_cols=232  Identities=19%  Similarity=0.274  Sum_probs=199.9

Q ss_pred             cCccccHHHHHHHhhccccCchHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhchhhHHhhhhcHHH
Q psy8454         160 ISNIQTLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYL  239 (936)
Q Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (936)
                      +....++.++.+||+.  ..++ ..++.+.+++|+..|....++.+++..+.|+++|..+.+.+..+  |.    ..++.
T Consensus        10 ~~~~~~~~df~~FL~~--~~~~-~~~l~k~i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~~~--~~----~s~~~   80 (274)
T 2ot3_A           10 IETDRVSKEFIEFLKT--FHKT-GQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTR--GK----VPPER   80 (274)
T ss_dssp             ------CHHHHHHHHT--THHH-HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHST--TC----CCHHH
T ss_pred             ccCCCChHHHHHHHHH--Hhcc-cHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--hc----cCHHH
Confidence            3456678899999999  5444 57899999999999987667889999999999999999998765  22    22344


Q ss_pred             HHHHHHHHHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhccCCCCccccccccc-----ccchHHHHHHHhcccccCC
Q psy8454         240 IDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDL-----YDTVPRARSEISHIDCYST  314 (936)
Q Consensus       240 ~~~i~~~~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l~~~~~~~l~i~~~~-----~~~~~~a~~~l~~i~~~~~  314 (936)
                      .+.++++||+|||.+||+.+|++..+.+..+|..|+++|+.|+++++++|||+.++     ...|..|++||++|+.++|
T Consensus        81 ~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L~~i~~~~L~I~~~~~~p~~~~~~~~A~~eL~~i~~~~s  160 (274)
T 2ot3_A           81 VEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRV  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHTTTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHcCCCHHHcCCCcccCCchHHHHHHHHHHHHHHccccCC
Confidence            78999999999999999999999998899999999999999999999999998654     3568999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHHH
Q psy8454         315 ILGKIGCVRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSL  394 (936)
Q Consensus       315 p~~Kl~~l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~  394 (936)
                      |+||+.||++||+.|++....  ..+.+++||||||+||||||||+||+|.||+.||++|+.++..  ..||.|||||||
T Consensus       161 P~dKL~~l~~~~k~I~~~l~~--~~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l--~~GE~gY~lttl  236 (274)
T 2ot3_A          161 PRDKLACITKCSKHIFNAIKI--TKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL--MTGEDGYYFTNL  236 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTT--TSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccc--cCCHHHHHHHHH
Confidence            999999999999999986653  2346799999999999999999999999999999999988642  149999999999


Q ss_pred             HHHHHHHHcC
Q psy8454         395 EASIEHIKSG  404 (936)
Q Consensus       395 ~aa~~~i~~~  404 (936)
                      ++|+.||++-
T Consensus       237 ~aAv~fI~~l  246 (274)
T 2ot3_A          237 CCAVAFIEKL  246 (274)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-37  Score=323.21  Aligned_cols=132  Identities=36%  Similarity=0.438  Sum_probs=108.2

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|+.+++++|+++| ++++.+|..|+||||
T Consensus       110 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~  188 (241)
T 1k1a_A          110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALH  188 (241)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHH
T ss_pred             cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHH
Confidence            4456678888888888888888888888888888777567888888888888888888888887 888888888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       881 ~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +|++.|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|.+++++
T Consensus       189 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS  241 (241)
T 1k1a_A          189 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS  241 (241)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence            99999999999999999999888888899999999999999998888877653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.6e-37  Score=323.71  Aligned_cols=231  Identities=25%  Similarity=0.322  Sum_probs=180.7

Q ss_pred             CcccCCCCCCcHHHHHHHcC-------------CHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCCC
Q psy8454         514 TTQSMDDRGFTVLHVAALYG-------------RIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGA  579 (936)
Q Consensus       514 ~~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~  579 (936)
                      +++.+|..|.||||+|+..|             +.+++++|++.|++++. .|..|.||||+|+..|+.+++++|++.|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            45668999999999999987             89999999999999865 48999999999999999999999999999


Q ss_pred             CCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccC
Q psy8454         580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKR  659 (936)
Q Consensus       580 ~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~  659 (936)
                      +++.+|..|.||||+|+..|+.+++++|++.++     .+++..+..|.||||+|++.|+.+++++|++.|++++     
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----  151 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-----TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----  151 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT-----SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-----
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-----
Confidence            999999999999999999999999999998753     3678889999999999999999999999999887644     


Q ss_pred             CCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhh
Q psy8454         660 KVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKK  739 (936)
Q Consensus       660 g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (936)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (253)
T 1yyh_A          152 --------------------------------------------------------------------------------  151 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH  819 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~  819 (936)
                                                                                    ..+..|.||||+|+..|+
T Consensus       152 --------------------------------------------------------------~~d~~g~t~L~~A~~~~~  169 (253)
T 1yyh_A          152 --------------------------------------------------------------AVDDLGKSALHWAAAVNN  169 (253)
T ss_dssp             --------------------------------------------------------------CBCTTSCBHHHHHHHHTC
T ss_pred             --------------------------------------------------------------CcCCCCCCHHHHHHHcCC
Confidence                                                                          336678899999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG  898 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~G  898 (936)
                      .+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.|+.+++++|.+..
T Consensus       170 ~~~v~~Ll~~ga~~~~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          170 VDAAVVLLKNGANKDMQN-NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999998 89999999999999999999999999 999999999999999999999999999998653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.8e-36  Score=315.53  Aligned_cols=126  Identities=31%  Similarity=0.425  Sum_probs=100.6

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454         802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY  881 (936)
Q Consensus       802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~  881 (936)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+
T Consensus       106 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~  183 (237)
T 3b7b_A          106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD-NEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHI  183 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCCHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCCHHHH
Confidence            335567777888888888888888888888887777 77888888888888888888888887 8888888888888888


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhh
Q psy8454         882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTH  929 (936)
Q Consensus       882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~  929 (936)
                      |++.|+.+++++|+++|++++.+|..|+||||+|+.+|+...+..|++
T Consensus       184 A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888765555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-36  Score=318.50  Aligned_cols=234  Identities=26%  Similarity=0.333  Sum_probs=209.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcH
Q psy8454         516 QSMDDRGFTVLHVAALYGRIKVVDLVLE----LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTA  591 (936)
Q Consensus       516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~  591 (936)
                      +.+|.+|.||||+|+..|+.+++++|++    .|++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3478899999999999999999999997    799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchh
Q psy8454         592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLH  671 (936)
Q Consensus       592 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~  671 (936)
                      ||+|+..|+.+++++|++.+..  ...+++..+..|.||||.|++.|+.+++++|++.|++++..+              
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--------------  146 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAP--GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD--------------  146 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCT--TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC--ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc--------------
Confidence            9999999999999999997642  234678889999999999999999999999999987755321              


Q ss_pred             HHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCc
Q psy8454         672 VAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNE  751 (936)
Q Consensus       672 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~  751 (936)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (241)
T 1k1a_A          147 --------------------------------------------------------------------------------  146 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy8454         752 IKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA  831 (936)
Q Consensus       752 ~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~  831 (936)
                                                                          +..|.||||+|+..|+.+++++|+++|+
T Consensus       147 ----------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  174 (241)
T 1k1a_A          147 ----------------------------------------------------IKSGRSPLIHAVENNSLSMVQLLLQHGA  174 (241)
T ss_dssp             ----------------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ----------------------------------------------------ccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence                                                                2568899999999999999999999999


Q ss_pred             CcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454         832 DINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA  899 (936)
Q Consensus       832 ~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga  899 (936)
                      +++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.++++.|++.++
T Consensus       175 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          175 NVNAQM-YSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999998 89999999999999999999999999 9999999999999999999999999999998776

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*

Probab=100.00  E-value=9e-37  Score=318.07  Aligned_cols=230  Identities=16%  Similarity=0.254  Sum_probs=191.7

Q ss_pred             cHHHHHHHhhccccCchHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhchhhHHhhhhcHHHHHHHH
Q psy8454         165 TLRDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIK  244 (936)
Q Consensus       165 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (936)
                      .+.++.+||..  ...+...++.+.|++|+..|.+.. +.+++..+.|+++|..+.+.+..++.|.. .  .++..+++.
T Consensus         8 ~~~~f~~Fl~~--l~~~~a~~~~~~i~~Fi~~f~~~~-~~~~e~~~~v~~f~~~~~~~l~~~~~~~~-~--~~~~~~~~~   81 (267)
T 2efe_A            8 VFLGLHDFLER--MRKPSAGDFVKSIKSFIVSFSNNA-PDPEKDCAMVQEFFSKMEAAFRAHPLWSG-C--SEEELDSAG   81 (267)
T ss_dssp             -------------CCSGGGHHHHHHHHHHHHTTTTSC-CCHHHHHHHHHHHHHHHHHHHHSCGGGTT-C--CHHHHHHHH
T ss_pred             chhHHHHHHHH--HcccchhHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHhcCccccc-C--CHHHHHHHH
Confidence            34566677776  555666899999999999998754 67889999999999988888877765442 2  223378999


Q ss_pred             HHHHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhc-cCCCCcccccccccc--cchHHHHHHHhcccccCCcchhHHH
Q psy8454         245 LAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNL-SDIQLKDLDIREDLY--DTVPRARSEISHIDCYSTILGKIGC  321 (936)
Q Consensus       245 ~~~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l-~~~~~~~l~i~~~~~--~~~~~a~~~l~~i~~~~~p~~Kl~~  321 (936)
                      ++||+|||++||+.+|++... +..+|..|+++|+.| ++++++||||++++.  .+|..|++||++|+.++||+||+.|
T Consensus        82 e~iEk~v~~~ly~~lf~~~~~-d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~~~A~~eL~ki~~~~sP~dKl~~  160 (267)
T 2efe_A           82 DGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVC  160 (267)
T ss_dssp             HHHHHHHHHHHHHHHSSCSHH-HHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCSHHHHHHHHTGGGCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCchh-hHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccHHHHHHHHHHhcccCCHHHHHHH
Confidence            999999999999999998765 688999999999999 699999999999886  5799999999999999999999999


Q ss_pred             HHHHHHHHHhhccc--ccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHHHHHHHH
Q psy8454         322 VRRCISAISKEDTR--DKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIE  399 (936)
Q Consensus       322 l~~~~~~i~~~~~~--~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~~aa~~  399 (936)
                      |++||+.|++....  ......++|||||||+||||||||+||+|.||+.||++|+.++..   .||.|||||||++|+.
T Consensus       161 l~~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l---~gE~gY~lt~l~aA~~  237 (267)
T 2efe_A          161 ILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKL---VGEAAYFFTNILSAES  237 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCcccc---CCHHHHHHHHHHHHHH
Confidence            99999999985532  123457799999999999999999999999999999999998776   6999999999999999


Q ss_pred             HHHcC
Q psy8454         400 HIKSG  404 (936)
Q Consensus       400 ~i~~~  404 (936)
                      ||++-
T Consensus       238 fI~~l  242 (267)
T 2efe_A          238 FISNI  242 (267)
T ss_dssp             HHHTC
T ss_pred             HHHhC
Confidence            99864

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.9e-37  Score=343.47  Aligned_cols=249  Identities=21%  Similarity=0.276  Sum_probs=216.3

Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccccc
Q psy8454         545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN  624 (936)
Q Consensus       545 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~  624 (936)
                      +.+.+..|..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++++        +..+
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~   81 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE--------VHSL   81 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC--------CCCC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------Cccc
Confidence            45667788899999999999999999999999999999999999999999999999999999999874        2334


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHC----CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCC
Q psy8454         625 NQGDSPLHAAARWGYTSIIQLLLDH----GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPP  700 (936)
Q Consensus       625 ~~g~t~L~~A~~~g~~~iv~~Ll~~----ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  700 (936)
                      ..|.||||+|+..|+.+++++|++.    |++++....                    ..                    
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------------------~~--------------------  121 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLN--------------------EC--------------------  121 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHT--------------------CC--------------------
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHh--------------------hc--------------------
Confidence            5799999999999999999999998    443321000                    00                    


Q ss_pred             CCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcc
Q psy8454         701 SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAK  780 (936)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~  780 (936)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (364)
T 3ljn_A          122 --------------------------------------------------------------------------------  121 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHH
Q psy8454         781 CKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG--HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR  858 (936)
Q Consensus       781 ~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g--~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~  858 (936)
                                .......++++..+..|.||||+|+..|  +.+++++|+++|++++..+ ..|.||||+|+..|+.++|+
T Consensus       122 ----------~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d-~~g~t~L~~A~~~g~~~~v~  190 (364)
T 3ljn_A          122 ----------DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-KADETPLMRAMEFRNREALD  190 (364)
T ss_dssp             ----------CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHTTCHHHHH
T ss_pred             ----------chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHH
Confidence                      0000112335677889999999999999  9999999999999999999 89999999999999999999


Q ss_pred             HHHhcCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         859 LLLAAKQCN-----VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       859 ~LL~~g~~d-----vn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +|++.| ++     +|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++++.
T Consensus       191 ~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          191 LMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence            999998 77     999999999999999999999999999999999999999999999999999999999999999764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-35  Score=310.10  Aligned_cols=229  Identities=27%  Similarity=0.430  Sum_probs=212.1

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454         514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH  593 (936)
Q Consensus       514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  593 (936)
                      .++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454         594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA  673 (936)
Q Consensus       594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~  673 (936)
                      +|+..|+.+++++|++.+.     .+++..+..|.||||+|++.|+.+++++|+++|++++                   
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-------------------  138 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQ-----MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-------------------  138 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTC-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------------
T ss_pred             HHHHcCCHHHHHHHHhCCC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------------------
Confidence            9999999999999998652     4678889999999999999999999999999887644                   


Q ss_pred             HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454         674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK  753 (936)
Q Consensus       674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~  753 (936)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (237)
T 3b7b_A          139 --------------------------------------------------------------------------------  138 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCc
Q psy8454         754 LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADI  833 (936)
Q Consensus       754 ~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v  833 (936)
                                                                      ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus       139 ------------------------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  170 (237)
T 3b7b_A          139 ------------------------------------------------IRDNEENICLHWAAFSGCVDIAEILLAAKCDL  170 (237)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT
T ss_pred             ------------------------------------------------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence                                                            33567889999999999999999999999999


Q ss_pred             ccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454         834 NIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK  896 (936)
Q Consensus       834 ~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~  896 (936)
                      +..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.+|+.+.+..|++
T Consensus       171 ~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          171 HAVN-IHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCcC-CCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9998 89999999999999999999999998 9999999999999999999999976666554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-35  Score=309.63  Aligned_cols=128  Identities=31%  Similarity=0.365  Sum_probs=104.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      +..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+
T Consensus       103 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~  180 (231)
T 3aji_A          103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLAC  180 (231)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHH
Confidence            5566777777777788888888888888877777 77888888888888888888888877 788888888888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +.|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|++++++
T Consensus       181 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            88888888888888888888888888888888888888888888877765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.8e-35  Score=305.60  Aligned_cols=227  Identities=28%  Similarity=0.394  Sum_probs=210.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLVLELGAD-TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN  598 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~  598 (936)
                      ..+.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            4578999999999999999999987644 677899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHH
Q psy8454         599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA  678 (936)
Q Consensus       599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~  678 (936)
                      |+.+++++|++++      .+++..+..|.||||+|+..|+.+++++|++.|++++                        
T Consensus        84 ~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------  133 (231)
T 3aji_A           84 GXDEIVKALLVKG------AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD------------------------  133 (231)
T ss_dssp             TCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------------
T ss_pred             CHHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------------
Confidence            9999999999865      5788899999999999999999999999999887644                        


Q ss_pred             hhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHH
Q psy8454         679 YVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSY  758 (936)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~L  758 (936)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (231)
T 3aji_A          134 --------------------------------------------------------------------------------  133 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc
Q psy8454         759 FGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR  838 (936)
Q Consensus       759 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~  838 (936)
                                                                 ..+..|.||||+|+..|+.+++++|+++|++++..+ 
T Consensus       134 -------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-  169 (231)
T 3aji_A          134 -------------------------------------------AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD-  169 (231)
T ss_dssp             -------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-
T ss_pred             -------------------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccC-
Confidence                                                       335678899999999999999999999999999998 


Q ss_pred             cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy8454         839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP  901 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~  901 (936)
                      ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.++.+++++|+++|+++
T Consensus       170 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          170 TEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            89999999999999999999999998 999999999999999999999999999999998763

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-36  Score=325.28  Aligned_cols=158  Identities=26%  Similarity=0.313  Sum_probs=134.9

Q ss_pred             HHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454         462 EFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLV  541 (936)
Q Consensus       462 ~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  541 (936)
                      .+++.|..+.++.++............                        ......+..|.||||.|+..|+.+++++|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~t~l~~A~~~g~~~~v~~L   59 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVK------------------------RKKTKVKFDDGAVFLAACSSGDTEEVLRL   59 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCC------------------------CSCCCCEECHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcccccccccccc------------------------CcccccccCCccHHHHHHHcCCHHHHHHH
Confidence            477888889999999887653321000                        01112345688999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcc
Q psy8454         542 LELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN  621 (936)
Q Consensus       542 l~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~  621 (936)
                      +++|++++..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++|++|++++      ++++
T Consensus        60 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g------~~~~  133 (299)
T 1s70_B           60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG------AHVG  133 (299)
T ss_dssp             HHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCTT
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC------CCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999865      5778


Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         622 AVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       622 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                      ..+..|.|||++|+..|+.+++++++..
T Consensus       134 ~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B          134 AVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             CCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            8899999999999999999999888764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-36  Score=319.26  Aligned_cols=230  Identities=29%  Similarity=0.351  Sum_probs=171.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHhCcH-HHHHHHHhCCCCCCcCCCCC
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGAD--------TNSQDLCGCSPLHYAATRGHQ-NVLLLLLHSGASINLTDNEG  588 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~g~~~~~~d~~g  588 (936)
                      +|.++.++|+.|+..|+.++|++|++.|++        ++..+..|.|||+.|+..++. .++++|++.|++++.+|.+|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            677788999999999999999999998875        456677889999999988765 47899999999999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhh
Q psy8454         589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN  668 (936)
Q Consensus       589 ~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  668 (936)
                      .||||+|+..|+.++|++|++.+      ++++..+..|.||++.|+..++.+++++|++.|++++              
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~------a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--------------  146 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHG------ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--------------  146 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--------------
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcC------CCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--------------
Confidence            99999999999999999999865      5778889999999999999999999999999887644              


Q ss_pred             chhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHH
Q psy8454         669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIE  748 (936)
Q Consensus       669 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~  748 (936)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (269)
T 4b93_B          147 --------------------------------------------------------------------------------  146 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8454         749 NNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN  828 (936)
Q Consensus       749 ~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~  828 (936)
                                                                           .+|..|.||||+||..|+.+++++|++
T Consensus       147 -----------------------------------------------------~~d~~g~TpL~~A~~~g~~~~v~~Ll~  173 (269)
T 4b93_B          147 -----------------------------------------------------KKDLSGNTPLIYACSGGHHELVALLLQ  173 (269)
T ss_dssp             -----------------------------------------------------CCCTTCCCHHHHHHHTTCGGGHHHHHH
T ss_pred             -----------------------------------------------------CCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                                                                 346678899999999999999999999


Q ss_pred             CCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCc
Q psy8454         829 YRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH-TNLATLLLKSGARPQ  902 (936)
Q Consensus       829 ~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~-~~iv~~LL~~Ga~~~  902 (936)
                      +|++++..+ ..|.||||+||..|+.++|++|+++| +|+|.+|..|+||||+|+++|+ .+++++|...|+.++
T Consensus       174 ~gadvn~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          174 HGASINASN-NKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             TTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             CCCCCCccc-cCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            999999988 89999999999999999999999998 9999999999999999998886 456666666666543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-36  Score=319.93  Aligned_cols=228  Identities=31%  Similarity=0.420  Sum_probs=171.4

Q ss_pred             CCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC--------CCcCCCCCCcHHHHHHHcCcH-HHHHHHHhcccccccccCc
Q psy8454         550 SQDLCGCSPLHYAATRGHQNVLLLLLHSGAS--------INLTDNEGNTALHLATNNGHE-TCVKALIYFNEQEVLNLNI  620 (936)
Q Consensus       550 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~--------~~~~d~~g~t~L~~A~~~g~~-eiv~~Ll~~~~~~~~~~~~  620 (936)
                      .+|..+.++|+.|+..|+.++|++|++.|++        ++..+..|.|||+.|+..++. .++++|++.|      +++
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G------adv   79 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG------LGV   79 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC------CCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC------CCC
Confidence            3566778999999999999999999998875        355667788888888877664 4778888754      577


Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCC
Q psy8454         621 NAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPP  700 (936)
Q Consensus       621 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  700 (936)
                      |.+|..|.||||+|++.|+.+++++|++.|++++                                              
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~----------------------------------------------  113 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG----------------------------------------------  113 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT----------------------------------------------
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC----------------------------------------------
Confidence            8888888888888888888888888888777644                                              


Q ss_pred             CCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcc
Q psy8454         701 SPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAK  780 (936)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~  780 (936)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (269)
T 4b93_B          114 --------------------------------------------------------------------------------  113 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHH
Q psy8454         781 CKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLL  860 (936)
Q Consensus       781 ~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~L  860 (936)
                                           ..+..|.||++.|+..++.+++++|+++|++++..+ ..|.||||+||..|+.++|++|
T Consensus       114 ---------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d-~~g~TpL~~A~~~g~~~~v~~L  171 (269)
T 4b93_B          114 ---------------------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD-LSGNTPLIYACSGGHHELVALL  171 (269)
T ss_dssp             ---------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTCCCHHHHHHHTTCGGGHHHH
T ss_pred             ---------------------ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHH
Confidence                                 336678899999999999999999999999999998 8999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC-HHHHHHHhhhCC
Q psy8454         861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS-LSLVRVLTHEAP  932 (936)
Q Consensus       861 L~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~-~~iv~~Ll~~~~  932 (936)
                      ++.| +|+|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|+||||+|+++++ .+++++|...++
T Consensus       172 l~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          172 LQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             HHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred             HHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence            9999 9999999999999999999999999999999999999999999999999998876 345555544443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.7e-35  Score=302.57  Aligned_cols=223  Identities=27%  Similarity=0.373  Sum_probs=179.1

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhCCCCCCc-CCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccc-ccCCCChHHH
Q psy8454         555 GCSPLHYAATRGHQNVLLLLLHSGASINL-TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLH  632 (936)
Q Consensus       555 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~  632 (936)
                      |.||||+|+..|+.+++++|++.|.++.. .|..|.||||+|+..|+.+++++|++.++    ..+++. .+..|.||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME----NVNLDDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCT----TCCGGGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccc----cccccccCCCCCCCHHH
Confidence            55666666666666666666666655433 56666667777766667777777766542    133444 6677888888


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccc
Q psy8454         633 AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDY  712 (936)
Q Consensus       633 ~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (936)
                      +|+..|+.+++++|++.|...+                                                          
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~----------------------------------------------------------   99 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPD----------------------------------------------------------   99 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCC----------------------------------------------------------
T ss_pred             HHHHcCCHHHHHHHHhCCCCcc----------------------------------------------------------
Confidence            8888888888888887763221                                                          


Q ss_pred             cccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCcc
Q psy8454         713 SDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP  792 (936)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  792 (936)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (228)
T 2dzn_A          100 --------------------------------------------------------------------------------   99 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC
Q psy8454         793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD  872 (936)
Q Consensus       793 l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d  872 (936)
                             ++..+..|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|.++++.+|
T Consensus       100 -------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d  171 (228)
T 2dzn_A          100 -------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  171 (228)
T ss_dssp             -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred             -------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC
Confidence                   34457778999999999999999999999999999998 8999999999999999999999999989999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         873 YRGNTALHYAAINNHTNLATLLL-KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       873 ~~g~TpL~~A~~~g~~~iv~~LL-~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      ..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|++.   +++++|+++
T Consensus       172 ~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99999999999999999999999 89999999999999999999764   678888764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=300.89  Aligned_cols=125  Identities=30%  Similarity=0.505  Sum_probs=65.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC-HHHHHHHHhcCCCCCCCCCC-CCCcHHHHHH
Q psy8454         806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN-LSIVRLLLAAKQCNVNAQDY-RGNTALHYAA  883 (936)
Q Consensus       806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~-~~iv~~LL~~g~~dvn~~d~-~g~TpL~~A~  883 (936)
                      .|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..++ .+++++|++.| ++++..+. .|.||||+|+
T Consensus       108 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~  185 (240)
T 3eu9_A          108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-QNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAV  185 (240)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHCCSSTTHHHHHHTT-CCTTCCCTTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhCChHHHHHHHHhcC-CCcchhhccCCCcHHHHHH
Confidence            34445555555555555555555555555444 455555555553333 45555555554 55555554 5555555555


Q ss_pred             HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      ..|+.+++++|+++|++++.+|..|.|||++|++.|+.+++++|+++++
T Consensus       186 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            5555555555555555555555555555555555555555555555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.2e-35  Score=317.55  Aligned_cols=242  Identities=21%  Similarity=0.276  Sum_probs=210.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy8454         516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLA  595 (936)
Q Consensus       516 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A  595 (936)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  102 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA  102 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence            3478889999999999999999999999999999884  89999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccCcccccCCC-ChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHH
Q psy8454         596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQG-DSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK  674 (936)
Q Consensus       596 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  674 (936)
                      +..|+.+++++|+++|      ++++..+..| .||||+|+..|+.+++++|+++|++...                   
T Consensus       103 ~~~g~~~~v~~Ll~~g------a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------------------  157 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKN------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-------------------  157 (285)
T ss_dssp             HHTTCHHHHHHHHHHC------GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-------------------
T ss_pred             HHcCCHHHHHHHHhcC------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-------------------
Confidence            9999999999999865      5678889999 7999999999999999999998764310                   


Q ss_pred             HHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHH
Q psy8454         675 LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKL  754 (936)
Q Consensus       675 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~  754 (936)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (285)
T 3kea_A          158 --------------------------------------------------------------------------------  157 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8454         755 IKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN  834 (936)
Q Consensus       755 vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~  834 (936)
                                                                       ...|.||||+|+..|+.+++++|+++|++++
T Consensus       158 -------------------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n  188 (285)
T 3kea_A          158 -------------------------------------------------LAILLSCIHITIKNGHVDMMILLLDYMTSTN  188 (285)
T ss_dssp             -------------------------------------------------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             -------------------------------------------------ccCCccHHHHHHHcChHHHHHHHHHcCCCCC
Confidence                                                             1267899999999999999999999999999


Q ss_pred             cccccCCCcH-HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHH
Q psy8454         835 IVTRVKQLTP-LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH  913 (936)
Q Consensus       835 ~~~~~~g~Tp-Lh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~  913 (936)
                      ..+ ..|.|| ||+|+..|+.+++++|+++| ++++.+|       +.|+..|+.++|++|+++|++++..+.  .+.+.
T Consensus       189 ~~~-~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~~~~~--~~~~~  257 (285)
T 3kea_A          189 TNN-SLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSAN-------LENVLLDDAEIAKMIIEKHVEYKSDSY--TKDLD  257 (285)
T ss_dssp             TTC-CCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHTTCTT--TTTCH
T ss_pred             ccc-CCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCCCccc--cchHH
Confidence            998 888887 99999999999999999998 9999988       367889999999999999998776543  33455


Q ss_pred             HHHHcCCHHHH
Q psy8454         914 MAQQMTSLSLV  924 (936)
Q Consensus       914 ~A~~~g~~~iv  924 (936)
                      .+......+++
T Consensus       258 ~~~~~~~~~ii  268 (285)
T 3kea_A          258 IVKNNKLDEII  268 (285)
T ss_dssp             HHHTCSHHHHH
T ss_pred             HHhhhhHHHHH
Confidence            55444444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=300.37  Aligned_cols=233  Identities=27%  Similarity=0.394  Sum_probs=208.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC-CCCCcHHHHH
Q psy8454         517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD-NEGNTALHLA  595 (936)
Q Consensus       517 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d-~~g~t~L~~A  595 (936)
                      ..|..|.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            367789999999999999999999999999999999999999999999999999999999999988655 4499999999


Q ss_pred             HHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHH
Q psy8454         596 TNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKL  675 (936)
Q Consensus       596 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~l  675 (936)
                      +..|+.+++++|++++      .+++..+..|.|||+.|++.|+.+++++|+++|++++.                    
T Consensus        84 ~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--------------------  137 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYG------ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--------------------  137 (240)
T ss_dssp             HHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------------
T ss_pred             HHcCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc--------------------
Confidence            9999999999999865      56788899999999999999999999999998776443                    


Q ss_pred             HHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHH
Q psy8454         676 LNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLI  755 (936)
Q Consensus       676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~v  755 (936)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (240)
T 3eu9_A          138 --------------------------------------------------------------------------------  137 (240)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCcc
Q psy8454         756 KSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH-YDLVRLLINYRADIN  834 (936)
Q Consensus       756 k~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~-~~~v~~LL~~g~~v~  834 (936)
                                                                     .+..|.||||.|+..++ .+++++|++.|++++
T Consensus       138 -----------------------------------------------~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~  170 (240)
T 3eu9_A          138 -----------------------------------------------MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN  170 (240)
T ss_dssp             -----------------------------------------------CCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT
T ss_pred             -----------------------------------------------cCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc
Confidence                                                           35667788888886665 899999999999999


Q ss_pred             cccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Q psy8454         835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI  903 (936)
Q Consensus       835 ~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~  903 (936)
                      ..+...|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.|+.+++++|+++|++...
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          171 LGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            998559999999999999999999999998 99999999999999999999999999999999987543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4e-35  Score=315.46  Aligned_cols=233  Identities=18%  Similarity=0.214  Sum_probs=206.7

Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      ..++.++|.+.  +++.+|..|.||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.+++++|+++|  
T Consensus        12 ~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g--   85 (285)
T 3kea_A           12 SKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG--   85 (285)
T ss_dssp             HHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTT--
T ss_pred             HHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCC--
Confidence            34555666554  578899999999999999999999999999999988874  899999999999999999999865  


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK  693 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~  693 (936)
                          ++++.++..|.||||+|+..|+.+++++|+++|+++                                        
T Consensus        86 ----a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------------------------------------  121 (285)
T 3kea_A           86 ----LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL----------------------------------------  121 (285)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG----------------------------------------
T ss_pred             ----CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC----------------------------------------
Confidence                578889999999999999999999999999877653                                        


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454         694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH  773 (936)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~  773 (936)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (285)
T 3kea_A          122 --------------------------------------------------------------------------------  121 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhcccchhhhhccCccccccCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCC
Q psy8454         774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDG-YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN  852 (936)
Q Consensus       774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g-~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g  852 (936)
                                                 +..+..| .||||+|+..|+.+++++|+++|+++...  ..|.||||+|+..|
T Consensus       122 ---------------------------~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g  172 (285)
T 3kea_A          122 ---------------------------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNG  172 (285)
T ss_dssp             ---------------------------GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHHHTT
T ss_pred             ---------------------------CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHHHcC
Confidence                                       4446677 79999999999999999999999887322  38899999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         853 NLSIVRLLLAAKQCNVNAQDYRGNTA-LHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       853 ~~~iv~~LL~~g~~dvn~~d~~g~Tp-L~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +.+++++|+++| +++|.+|..|+|| ||+|++.|+.+++++|+++|++++.+|.       .|+..|+.+++++|+++|
T Consensus       173 ~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          173 HVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             CHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcC
Confidence            999999999998 9999999999998 9999999999999999999999999883       668899999999999987


Q ss_pred             CC
Q psy8454         932 PF  933 (936)
Q Consensus       932 ~~  933 (936)
                      ..
T Consensus       245 ~~  246 (285)
T 3kea_A          245 VE  246 (285)
T ss_dssp             HH
T ss_pred             CC
Confidence            54

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.4e-34  Score=308.03  Aligned_cols=254  Identities=22%  Similarity=0.196  Sum_probs=191.7

Q ss_pred             hcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHH
Q psy8454         450 NYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVA  529 (936)
Q Consensus       450 ~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  529 (936)
                      +..+..+.|+|+.|++.|+.++|++|++.+.+..                              .++.++..|.||||+|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------------------~~~~~~~~g~t~L~~A   52 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE------------------------------YLDLQNDLGQTALHLA   52 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG------------------------------GGGCCCTTSCCHHHHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc------------------------------cccccCCCCCCHHHHH
Confidence            4556788999999999999999999999987632                              1334778899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcC-------------CCCCCcHHHHHH
Q psy8454         530 ALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLT-------------DNEGNTALHLAT  596 (936)
Q Consensus       530 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-------------d~~g~t~L~~A~  596 (936)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++....             ...+.++++.++
T Consensus        53 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (282)
T 1oy3_D           53 AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS  132 (282)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcc
Confidence            9999999999999999999999999999999999999999999999999775422             234556666666


Q ss_pred             HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL  676 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll  676 (936)
                      ..+....+..++.     ..+.+++..+..|.||||+|++.|+.+++++|+++|++++..+                   
T Consensus       133 ~~~~~~~~~~~~~-----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------------  188 (282)
T 1oy3_D          133 QPNPENEEEPRDE-----DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE-------------------  188 (282)
T ss_dssp             -----------CC-----CGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-------------------
T ss_pred             ccccchhhhhhhh-----hhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------------------
Confidence            6554443333332     2345678889999999999999999999999999887755321                   


Q ss_pred             HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454         677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK  756 (936)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk  756 (936)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (282)
T 1oy3_D          189 --------------------------------------------------------------------------------  188 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccc
Q psy8454         757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIV  836 (936)
Q Consensus       757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~  836 (936)
                                                                     +..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       189 -----------------------------------------------~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  221 (282)
T 1oy3_D          189 -----------------------------------------------PTCGRTPLHLAVEAQAASVLELLLKAGADPTAR  221 (282)
T ss_dssp             -----------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             -----------------------------------------------CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence                                                           234889999999999999999999999999999


Q ss_pred             cccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC
Q psy8454         837 TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN  886 (936)
Q Consensus       837 ~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g  886 (936)
                      + ..|.||||+|+..|+.+++++|+++| ++++.+|..|.|||++|....
T Consensus       222 d-~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          222 M-YGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             C-TTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred             c-cCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence            9 89999999999999999999999999 999999999999999998765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.9e-34  Score=295.45  Aligned_cols=127  Identities=30%  Similarity=0.311  Sum_probs=68.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      +..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+
T Consensus        89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A           89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAA  166 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHH
Confidence            3344455555555555555555555555555544 45555555555555555555555554 555555555555555555


Q ss_pred             HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      +.|+.+++++|+++|++++.+|..|.||+++|++.|+.+++++|++.|.
T Consensus       167 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            5555555555555555555555555555555555555555555555544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.6e-34  Score=294.46  Aligned_cols=217  Identities=24%  Similarity=0.303  Sum_probs=198.6

Q ss_pred             cCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy8454         532 YGRIKVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF  610 (936)
Q Consensus       532 ~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  610 (936)
                      .|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            37888999999999999875 88999999999999999999999999999999999999999999999999999999986


Q ss_pred             ccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCcccccc
Q psy8454         611 NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL  690 (936)
Q Consensus       611 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~  690 (936)
                      ++     .+++..+..|.||||+|+..|+.+++++|+++|++++                                    
T Consensus        81 ~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------------------  119 (223)
T 2f8y_A           81 RA-----TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------------------------------  119 (223)
T ss_dssp             TT-----SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------------------------------------
T ss_pred             CC-----CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc------------------------------------
Confidence            53     3678889999999999999999999999999887644                                    


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCC
Q psy8454         691 VPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDN  770 (936)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~  770 (936)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (223)
T 2f8y_A          120 --------------------------------------------------------------------------------  119 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454         771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ  850 (936)
Q Consensus       771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~  850 (936)
                                                     ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus       120 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~  167 (223)
T 2f8y_A          120 -------------------------------AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN-NREETPLFLAAR  167 (223)
T ss_dssp             -------------------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHH
T ss_pred             -------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCcCHHHHHHH
Confidence                                           336678899999999999999999999999999998 899999999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy8454         851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ  902 (936)
Q Consensus       851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~  902 (936)
                      .|+.+++++|+++| ++++.+|..|.||||+|++.|+.+++++|+++|+...
T Consensus       168 ~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          168 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             cCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999 9999999999999999999999999999999999643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.4e-33  Score=293.15  Aligned_cols=219  Identities=24%  Similarity=0.296  Sum_probs=197.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCC--CCCCc-CCCCCCcHHHHHHH
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSG--ASINL-TDNEGNTALHLATN  597 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~-~d~~g~t~L~~A~~  597 (936)
                      |.||||+|+..|+.+++++|++.|.++.. .+..|.||||+|+..|+.+++++|++.|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            68999999999999999999999988764 8899999999999999999999999999  55555 78999999999999


Q ss_pred             cCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHH
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN  677 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~  677 (936)
                      .|+.+++++|++++    .+.+++..+..|.||||.|++.|+.+++++|+++|++++.                      
T Consensus        82 ~~~~~~~~~Ll~~g----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----------------------  135 (228)
T 2dzn_A           82 VGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI----------------------  135 (228)
T ss_dssp             HCCHHHHHHHHSSS----SCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------------------
T ss_pred             cCCHHHHHHHHhCC----CCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc----------------------
Confidence            99999999999875    2357888999999999999999999999999998876543                      


Q ss_pred             HhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHH
Q psy8454         678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS  757 (936)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~  757 (936)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (228)
T 2dzn_A          136 --------------------------------------------------------------------------------  135 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCcccc
Q psy8454         758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIV  836 (936)
Q Consensus       758 Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g-~~v~~~  836 (936)
                                                                   .+..|.||||+|+..|+.+++++|+++| ++++..
T Consensus       136 ---------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  170 (228)
T 2dzn_A          136 ---------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ  170 (228)
T ss_dssp             ---------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCC
T ss_pred             ---------------------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCc
Confidence                                                         3667889999999999999999999999 999998


Q ss_pred             cccCCCcHHHHHHhCCCHHHHHHHH-hcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454         837 TRVKQLTPLHIACQNNNLSIVRLLL-AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK  896 (936)
Q Consensus       837 ~~~~g~TpLh~A~~~g~~~iv~~LL-~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~  896 (936)
                      + ..|.||||+|+..|+.+++++|+ +.| ++++.+|..|+||||+|++.   +++++|++
T Consensus       171 d-~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          171 D-KQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             C-TTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             C-CCCCCHHHHHHHcCCHHHHHHHHHhcC-CCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            8 89999999999999999999999 777 99999999999999999765   57777765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=9.9e-35  Score=318.90  Aligned_cols=257  Identities=17%  Similarity=0.153  Sum_probs=197.2

Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC-----------------CCCCcHHHH
Q psy8454         532 YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD-----------------NEGNTALHL  594 (936)
Q Consensus       532 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d-----------------~~g~t~L~~  594 (936)
                      ..+.+++++|+++|++++..+..|.|+++     |+.+++++|+++|++++...                 ....+.+|.
T Consensus        29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  103 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV  103 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred             hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHH
Confidence            46667899999999999999999999977     88999999999998765411                 111233577


Q ss_pred             HHHcCcHHHHHHHHhcccccccccCccc-ccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454         595 ATNNGHETCVKALIYFNEQEVLNLNINA-VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA  673 (936)
Q Consensus       595 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~  673 (936)
                      |+..+..+++++|++.+      +++|. .+..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..+..
T Consensus       104 a~~~~~~~~~~~l~~~g------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          104 SFDSLLQEVNDAFPNTQ------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             CHHHHHHHHHHHCTTSC------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred             HHHhhHHHHHHHHHhcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence            88888889999998754      67888 899999999999999999999999999999999999999999998764330


Q ss_pred             HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454         674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK  753 (936)
Q Consensus       674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~  753 (936)
                      .                                                                            +.+
T Consensus       178 ~----------------------------------------------------------------------------~~~  181 (327)
T 1sw6_A          178 Y----------------------------------------------------------------------------DSG  181 (327)
T ss_dssp             H----------------------------------------------------------------------------HTT
T ss_pred             c----------------------------------------------------------------------------cHH
Confidence            0                                                                            011


Q ss_pred             HHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHH----cCCHHHHHHHHhC
Q psy8454         754 LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATS----LGHYDLVRLLINY  829 (936)
Q Consensus       754 ~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~----~g~~~~v~~LL~~  829 (936)
                      +++.|++.                                  ...+++..+..|.||||+|+.    .|+.+++++|++.
T Consensus       182 ~~~~ll~~----------------------------------~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          182 TFEALLDY----------------------------------LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             CHHHHHHH----------------------------------HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHh----------------------------------hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            11111110                                  012368889999999999999    8999999999987


Q ss_pred             --------------------CCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy8454         830 --------------------RADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN  889 (936)
Q Consensus       830 --------------------g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~  889 (936)
                                          |++++..+ ..|.||||+|+.      +++|+++   ++|.+|..|+||||+|++.|+.+
T Consensus       228 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~-~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~  297 (327)
T 1sw6_A          228 LMGWIVKKQNRPIQSGTNEKESKPNDKN-GERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNIS  297 (327)
T ss_dssp             HHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHhcccchHHHhhhhcccCCccccc-ccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHH
Confidence                                89999998 899999999985      9999997   68999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCcccCCCcHHHHHHHcC
Q psy8454         890 LATLLLKSGARPQIKNHYGQTCLHMAQQMT  919 (936)
Q Consensus       890 iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g  919 (936)
                      +|++|+++||+++.+|..|+||||+|+++|
T Consensus       298 ~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          298 IVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            999999999999999999999999998765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-32  Score=298.53  Aligned_cols=123  Identities=25%  Similarity=0.380  Sum_probs=115.8

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      .+.++|+.|+..|+.++|++|++.+.+.+                                 ..+..|.||||+|+..|+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------~~~~~g~t~L~~A~~~g~   85 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADIN---------------------------------YANVDGLTALHQACIDDN   85 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTT---------------------------------CBCTTCCBHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCc---------------------------------ccCCCCCCHHHHHHHcCC
Confidence            45789999999999999999999986543                                 367789999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy8454         535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYF  610 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  610 (936)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++++..
T Consensus        86 ~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B           86 VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999974

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.1e-33  Score=292.18  Aligned_cols=118  Identities=25%  Similarity=0.321  Sum_probs=106.2

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+...|.||||+|+..|+.+++++|+++| ++++.+|..|+||||
T Consensus       111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGG
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHH
Confidence            5567889999999999999999999999999999998449999999999999999999999998 999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCc--CcccCCCcHHHHHHHcC
Q psy8454         881 YAAINNHTNLATLLLKSGARPQ--IKNHYGQTCLHMAQQMT  919 (936)
Q Consensus       881 ~A~~~g~~~iv~~LL~~Ga~~~--~~d~~g~T~L~~A~~~g  919 (936)
                      +|+..|+.+++++|+++|++..  ..+..|.||.+.+....
T Consensus       190 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             GCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred             HHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence            9999999999999999999876  78889999887776544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.3e-31  Score=277.18  Aligned_cols=200  Identities=25%  Similarity=0.317  Sum_probs=179.8

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhh
Q psy8454         587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQN  666 (936)
Q Consensus       587 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~  666 (936)
                      .|.||||.|+..|+.+++++|++.     .+.+++.++..|.||||+|+..|+.+++++|++.|+++...          
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~-----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----------   66 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKF-----EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE----------   66 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTT-----TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-----cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----------
Confidence            588999999999999999999985     24678899999999999999999999999999987653210          


Q ss_pred             hhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHH
Q psy8454         667 ANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL  746 (936)
Q Consensus       667 a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  746 (936)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (232)
T 2rfa_A           67 --------------------------------------------------------------------------------   66 (232)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454         747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLL  826 (936)
Q Consensus       747 i~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~L  826 (936)
                                                                          ..+..+..|.||||+|+..|+.+++++|
T Consensus        67 ----------------------------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~L   94 (232)
T 2rfa_A           67 ----------------------------------------------------PMTSELYEGQTALHIAVINQNVNLVRAL   94 (232)
T ss_dssp             ----------------------------------------------------CCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred             ----------------------------------------------------cccccCCCCcCHHHHHHHcCCHHHHHHH
Confidence                                                                0245577899999999999999999999


Q ss_pred             HhCCCCcccccc------------cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHH---
Q psy8454         827 INYRADINIVTR------------VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA---  891 (936)
Q Consensus       827 L~~g~~v~~~~~------------~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv---  891 (936)
                      +++|++++..+.            ..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+..|+.+++   
T Consensus        95 l~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i  173 (232)
T 2rfa_A           95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQM  173 (232)
T ss_dssp             HHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHH
T ss_pred             HhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHH
Confidence            999999998762            26999999999999999999999998 99999999999999999999999988   


Q ss_pred             -HHHHHcCCCC------cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         892 -TLLLKSGARP------QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       892 -~~LL~~Ga~~------~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                       ++|+++|+++      +.+|..|+||||+|++.|+.+++++|+++++..
T Consensus       174 ~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          174 YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence             9999999998      589999999999999999999999999987643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.4e-32  Score=287.27  Aligned_cols=220  Identities=27%  Similarity=0.323  Sum_probs=192.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGA----DTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH  593 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  593 (936)
                      +|.+|.||||+|+..|+.+++++|++.+.    +++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            67889999999999999999999998765    78999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHH
Q psy8454         594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVA  673 (936)
Q Consensus       594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~  673 (936)
                      +|+..|+.+++++|++.+........++..+..|.||||+|+..|+.+++++|+++|++++.                  
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------  145 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA------------------  145 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC------------------
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------
Confidence            99999999999999998764433445688899999999999999999999999998877553                  


Q ss_pred             HHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHH
Q psy8454         674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIK  753 (936)
Q Consensus       674 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~  753 (936)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (236)
T 1ikn_D          146 --------------------------------------------------------------------------------  145 (236)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy8454         754 LIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNS-DGYTALHIATSLGHYDLVRLLINYRAD  832 (936)
Q Consensus       754 ~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~-~g~t~L~~Aa~~g~~~~v~~LL~~g~~  832 (936)
                                                                       .+. .|.||||+|+..|+.+++++|+++|++
T Consensus       146 -------------------------------------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  176 (236)
T 1ikn_D          146 -------------------------------------------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGAD  176 (236)
T ss_dssp             -------------------------------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             -------------------------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                                             244 788999999999999999999999999


Q ss_pred             cccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCC--CCCCCCCcHHHHHHHcC
Q psy8454         833 INIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVN--AQDYRGNTALHYAAINN  886 (936)
Q Consensus       833 v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn--~~d~~g~TpL~~A~~~g  886 (936)
                      ++..+ ..|.||||+|+..|+.+++++|+++| ++..  ..+..|.||.+.+....
T Consensus       177 ~~~~~-~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          177 VNRVT-YQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             SCCCC-TTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC----
T ss_pred             CCccc-CCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhcccc
Confidence            99998 89999999999999999999999999 7665  77888888877665443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.8e-30  Score=261.45  Aligned_cols=193  Identities=24%  Similarity=0.299  Sum_probs=163.5

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhh
Q psy8454         586 NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ  665 (936)
Q Consensus       586 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~  665 (936)
                      ..+.||||.|+..|+.++++.|+..+     +.+++..+..|.||||+|++.|+.+++++|+++|++++.          
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------   67 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL----------   67 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCT-----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------
Confidence            45678888888888888888888754     236777788888888888888888888888887776443          


Q ss_pred             hhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHH
Q psy8454         666 NANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFA  745 (936)
Q Consensus       666 ~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  745 (936)
                                                                                                      
T Consensus        68 --------------------------------------------------------------------------------   67 (201)
T 3hra_A           68 --------------------------------------------------------------------------------   67 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q psy8454         746 LIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRL  825 (936)
Q Consensus       746 ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~  825 (936)
                                                                               .+..|.||||+|+..|+.+++++
T Consensus        68 ---------------------------------------------------------~~~~g~t~l~~A~~~~~~~~~~~   90 (201)
T 3hra_A           68 ---------------------------------------------------------QNSISDSPYLYAGAQGRTEILAY   90 (201)
T ss_dssp             ---------------------------------------------------------CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ---------------------------------------------------------CCCCCCCHHHHHHHcCCHHHHHH
Confidence                                                                     35567788888888999999999


Q ss_pred             HH-hCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC
Q psy8454         826 LI-NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH-----TNLATLLLKSGA  899 (936)
Q Consensus       826 LL-~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~-----~~iv~~LL~~Ga  899 (936)
                      |+ ..+++++..+ ..|.||||+|+..|+.+++++|++.|.++++.+|..|+||||+|+..|+     .+++++|+++|+
T Consensus        91 Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga  169 (201)
T 3hra_A           91 MLKHATPDLNKHN-RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA  169 (201)
T ss_dssp             HHHHSCCCTTCCC-TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred             HHhccCccccccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence            99 6677888887 7889999999999999999999999888999999999999999999888     899999999999


Q ss_pred             CCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +++.+|..|.||||+|++.|+.+++++|++.|
T Consensus       170 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          170 DQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999998875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.2e-30  Score=255.79  Aligned_cols=158  Identities=33%  Similarity=0.492  Sum_probs=148.3

Q ss_pred             HHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         741 EQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHY  820 (936)
Q Consensus       741 ~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~  820 (936)
                      +.|+.|++.|+.++|++|++                                   .|+++|.+|..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-----------------------------------~Gadvn~~d~~g~t~l~~a~~~~~~   50 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-----------------------------------NGADVNASDSDGRTPLHHAAENGHK   50 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-----------------------------------TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-----------------------------------CCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            46999999999999999986                                   4567899999999999999999999


Q ss_pred             HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       821 ~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      +++++|+++|++++..+ ..|.||||+||..|+.++|++|++.| +|+|.+|..|+||||+|++.|+.++|++|+++|++
T Consensus        51 ~~~~~ll~~gad~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad  128 (169)
T 4gpm_A           51 EVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD  128 (169)
T ss_dssp             HHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHhcccchhhhc-cCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999 89999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             CcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         901 PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       901 ~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      ++.+|..|+|||++|++.|+.+++++|+++|+++.
T Consensus       129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            99999999999999999999999999999999863

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4e-31  Score=282.81  Aligned_cols=230  Identities=18%  Similarity=0.208  Sum_probs=159.1

Q ss_pred             CCCCCCCCCcHHHHHHHhCcHHHHHHHHh----CCCCCC----cCCCCCCcHHHHHHHc---CcHHHHHHHHhcccccc-
Q psy8454         548 TNSQDLCGCSPLHYAATRGHQNVLLLLLH----SGASIN----LTDNEGNTALHLATNN---GHETCVKALIYFNEQEV-  615 (936)
Q Consensus       548 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~----~g~~~~----~~d~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~~~-  615 (936)
                      .+..|..|.||||+|+..|+.++|+.|++    .+++++    ..|..|.||||+|+..   |+.++|++|+++++... 
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            33444555555555555555555444443    344443    2355566666666654   56666666665543211 


Q ss_pred             ----cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccC
Q psy8454         616 ----LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLV  691 (936)
Q Consensus       616 ----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~  691 (936)
                          ........+..|.||||+|++.|+.+++++|+++|++++..+..+...                            
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~----------------------------  137 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK----------------------------  137 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS----------------------------
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc----------------------------
Confidence                112234467789999999999999999999999999988776432000                            


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCC
Q psy8454         692 PKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNA  771 (936)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~  771 (936)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (273)
T 2pnn_A          138 --------------------------------------------------------------------------------  137 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCcccccccCCCcHHHHH
Q psy8454         772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIA  848 (936)
Q Consensus       772 ~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~---~g~~v~~~~~~~g~TpLh~A  848 (936)
                                               ..+.+..+..|.||||+|+..|+.+++++|++   +|++++.++ ..|+||||+|
T Consensus       138 -------------------------~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d-~~g~tpLh~A  191 (273)
T 2pnn_A          138 -------------------------KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD-SVGNTVLHAL  191 (273)
T ss_dssp             -------------------------SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC-TTSCCHHHHH
T ss_pred             -------------------------cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeC-CCCCcHHHHH
Confidence                                     00124456789999999999999999999999   999999999 8999999999


Q ss_pred             HhCCC---------HHHHHHHHhcCCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcCcccCCCcH
Q psy8454         849 CQNNN---------LSIVRLLLAAKQCNVN-------AQDYRGNTALHYAAINNHTNLATLLLKSGA-RPQIKNHYGQTC  911 (936)
Q Consensus       849 ~~~g~---------~~iv~~LL~~g~~dvn-------~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga-~~~~~d~~g~T~  911 (936)
                      +..|+         .+++++|++.| +++|       .+|..|+||||+|++.|+.++|++|+++|| |+......+.+|
T Consensus       192 ~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          192 VEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             HHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            99988         89999999998 8887       489999999999999999999999999999 888777776665


Q ss_pred             H
Q psy8454         912 L  912 (936)
Q Consensus       912 L  912 (936)
                      -
T Consensus       271 ~  271 (273)
T 2pnn_A          271 H  271 (273)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=6.9e-33  Score=304.22  Aligned_cols=283  Identities=17%  Similarity=0.091  Sum_probs=195.6

Q ss_pred             hhHHHhhhhhccc------CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCC
Q psy8454         441 QLKVYNKYNNYKK------ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPT  514 (936)
Q Consensus       441 ~~~~~~~l~~~~~------~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (936)
                      ..+++++|++.+.      ..+.++++     |+.++|+.||+.|.++...       ++..+..         ..+...
T Consensus        31 ~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~-------~~~~a~~---------~~~~~~   89 (327)
T 1sw6_A           31 THDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQ-------EMPTSLN---------NDSSNR   89 (327)
T ss_dssp             CTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------------------
T ss_pred             cCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccc-------cchHhhh---------cccccc
Confidence            3456777877763      23445443     9999999999998774331       0000000         000000


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy8454         515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALH  593 (936)
Q Consensus       515 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~  593 (936)
                      ...+.....+.+|+|+..+..+++++|++.|+++|. +|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh  169 (327)
T 1sw6_A           90 NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLV  169 (327)
T ss_dssp             --------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHH
T ss_pred             cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            011222233446888888899999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHcCc---HHHHHHHHhcccccccccCcccccCCCChHHHHHHH----hCCHHHHHHHHHCCCCCCCcccCCCChhhh
Q psy8454         594 LATNNGH---ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR----WGYTSIIQLLLDHGANPTLENKRKVTPLQN  666 (936)
Q Consensus       594 ~A~~~g~---~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~  666 (936)
                      +|+..|+   .++++.|++++.     .+++..+..|.||||+|++    .|+.+++++|++.++.....          
T Consensus       170 ~A~~~g~~~~~~~~~~ll~~~~-----~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~----------  234 (327)
T 1sw6_A          170 KAVKSVNNYDSGTFEALLDYLY-----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK----------  234 (327)
T ss_dssp             HHHHSSHHHHTTCHHHHHHHHG-----GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHhcccccHHHHHHHHHhhh-----ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhc----------
Confidence            9999998   678888887652     3578899999999999999    89999999999864321100          


Q ss_pred             hhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHH
Q psy8454         667 ANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL  746 (936)
Q Consensus       667 a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  746 (936)
                                  ..                                                                  
T Consensus       235 ------------~~------------------------------------------------------------------  236 (327)
T 1sw6_A          235 ------------KQ------------------------------------------------------------------  236 (327)
T ss_dssp             ------------GG------------------------------------------------------------------
T ss_pred             ------------cc------------------------------------------------------------------
Confidence                        00                                                                  


Q ss_pred             HHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454         747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLL  826 (936)
Q Consensus       747 i~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~L  826 (936)
                                                             ...+...+...|++++..+..|.||||.|+.      +++|
T Consensus       237 ---------------------------------------~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          237 ---------------------------------------NRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             ---------------------------------------GCCEEEC----------------CHHHHHCS------HHHH
T ss_pred             ---------------------------------------chHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence                                                   0000012334578899999999999999985      8999


Q ss_pred             HhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcC
Q psy8454         827 INYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN  886 (936)
Q Consensus       827 L~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g  886 (936)
                      +++  +++.++ ..|+||||+||..|+.++|++|+++| +|++.+|..|+||||+|+++|
T Consensus       272 l~~--~~n~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          272 IAN--MLNAQD-SNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHH--TTTCCC-TTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             HHh--CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence            998  577788 89999999999999999999999998 999999999999999998765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.5e-31  Score=282.35  Aligned_cols=217  Identities=24%  Similarity=0.273  Sum_probs=179.6

Q ss_pred             CCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcc----cccCCCChHHHHHHHh---CCHHHHHHHHHC
Q psy8454         577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNIN----AVNNQGDSPLHAAARW---GYTSIIQLLLDH  649 (936)
Q Consensus       577 ~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~  649 (936)
                      .++..+..|..|.||||.|+..|+.++|+.|++++..  .+.+++    ..+..|.||||+|+..   |+.+++++|++.
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~   79 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQR--SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV   79 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHH--SCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhh--cccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence            3566677889999999999999999999999986532  223333    3578999999999987   999999999998


Q ss_pred             CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCC
Q psy8454         650 GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGV  729 (936)
Q Consensus       650 ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  729 (936)
                      |++....                                                                         
T Consensus        80 ga~~~~~-------------------------------------------------------------------------   86 (273)
T 2pnn_A           80 ARKTDSL-------------------------------------------------------------------------   86 (273)
T ss_dssp             HHHTTCH-------------------------------------------------------------------------
T ss_pred             hccccch-------------------------------------------------------------------------
Confidence            8754321                                                                         


Q ss_pred             CCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCc
Q psy8454         730 RPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYT  809 (936)
Q Consensus       730 ~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t  809 (936)
                                                +.+++                                     ..+...|..|.|
T Consensus        87 --------------------------~~~i~-------------------------------------~~~~~~d~~g~t  103 (273)
T 2pnn_A           87 --------------------------KQFVN-------------------------------------ASYTDSYYKGQT  103 (273)
T ss_dssp             --------------------------HHHHT-------------------------------------CCCCSTTTTTCC
T ss_pred             --------------------------hHHhh-------------------------------------cccccccCCCCC
Confidence                                      00000                                     012334678999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccc-------------cCCCcHHHHHHhCCCHHHHHHHHh---cCCCCCCCCCC
Q psy8454         810 ALHIATSLGHYDLVRLLINYRADINIVTR-------------VKQLTPLHIACQNNNLSIVRLLLA---AKQCNVNAQDY  873 (936)
Q Consensus       810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~-------------~~g~TpLh~A~~~g~~~iv~~LL~---~g~~dvn~~d~  873 (936)
                      |||+|+..|+.+++++|+++|++++..+.             ..|.||||+|+..|+.++|++|++   .| +++|.+|.
T Consensus       104 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~  182 (273)
T 2pnn_A          104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDS  182 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCC
Confidence            99999999999999999999999999883             179999999999999999999999   77 99999999


Q ss_pred             CCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc-------CcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         874 RGNTALHYAAINNH---------TNLATLLLKSGARPQ-------IKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       874 ~g~TpL~~A~~~g~---------~~iv~~LL~~Ga~~~-------~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      .|+||||+|++.|+         .+++++|+++|++++       .+|..|+||||+|++.|+.+++++|+++|+
T Consensus       183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            99999999999998         899999999999997       489999999999999999999999999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.1e-30  Score=276.36  Aligned_cols=211  Identities=21%  Similarity=0.256  Sum_probs=140.9

Q ss_pred             CCcHHHHHHHhCcHH----HHHHHHhCCCCCCc----CCCCCCcHHHHHHHc---CcHHHHHHHHhcccccc-----ccc
Q psy8454         555 GCSPLHYAATRGHQN----VLLLLLHSGASINL----TDNEGNTALHLATNN---GHETCVKALIYFNEQEV-----LNL  618 (936)
Q Consensus       555 g~t~L~~A~~~g~~~----iv~~Ll~~g~~~~~----~d~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~~~-----~~~  618 (936)
                      |+||||.|+..|+.+    ++++|++.|++++.    .|..|.||||+|+..   |+.++|++|++.++...     ...
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            445555555555554    33444445555555    455555555555555   55555555555443211     111


Q ss_pred             CcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCC
Q psy8454         619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSR  698 (936)
Q Consensus       619 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  698 (936)
                      .....|..|.||||+|+..|+.+++++|+++|++++..+..+.++                                   
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-----------------------------------  126 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ-----------------------------------  126 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----------------------------------
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----------------------------------
Confidence            233456789999999999999999999999999988765432110                                   


Q ss_pred             CCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchh
Q psy8454         699 PPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQC  778 (936)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~  778 (936)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (256)
T 2etb_A          127 --------------------------------------------------------------------------------  126 (256)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCcccccccCCCcHHHHHHh--CCC
Q psy8454         779 AKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQ--NNN  853 (936)
Q Consensus       779 ~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~---~g~~v~~~~~~~g~TpLh~A~~--~g~  853 (936)
                                         .+.+..+..|.||||+|+..|+.+++++|++   +|++++..+ ..|+||||+|+.  .++
T Consensus       127 -------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d-~~g~TpLh~A~~~~~~~  186 (256)
T 2etb_A          127 -------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD-SLGNTVLHALVMIADNS  186 (256)
T ss_dssp             -------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC-TTSCCHHHHHHHHCCSC
T ss_pred             -------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccC-CCCCCHHHHHHHcccCC
Confidence                               0123335567888888888888888888888   788877777 777788888777  677


Q ss_pred             HH-------HHHHHHhcCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q psy8454         854 LS-------IVRLLLAAKQCNV-------NAQDYRGNTALHYAAINNHTNLATLLLKSGARP  901 (936)
Q Consensus       854 ~~-------iv~~LL~~g~~dv-------n~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~  901 (936)
                      .+       ++++|+++| +++       +.+|..|+||||+|++.|+.++|++|+++|++.
T Consensus       187 ~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          187 PENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            77       777777777 777       677777777777777777777777777776643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=8.1e-31  Score=277.54  Aligned_cols=204  Identities=25%  Similarity=0.267  Sum_probs=177.1

Q ss_pred             CCCcHHHHHHHcCcHH----HHHHHHhcccccccccCccc----ccCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCC
Q psy8454         587 EGNTALHLATNNGHET----CVKALIYFNEQEVLNLNINA----VNNQGDSPLHAAARW---GYTSIIQLLLDHGANPTL  655 (936)
Q Consensus       587 ~g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~  655 (936)
                      .|.||||.|+..|+.+    ++++|++.+      .+++.    .+..|.||||+|+..   |+.+++++|++.|++++.
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g------~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~   74 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS------KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN   74 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC------CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence            3789999999999997    556666544      57777    799999999999999   999999999998877653


Q ss_pred             cccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchh
Q psy8454         656 ENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT  735 (936)
Q Consensus       656 ~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (936)
                      .+.     +               .                                                       
T Consensus        75 ~~~-----~---------------~-------------------------------------------------------   79 (256)
T 2etb_A           75 PKP-----L---------------V-------------------------------------------------------   79 (256)
T ss_dssp             SSC-----G---------------G-------------------------------------------------------
T ss_pred             hhh-----h---------------c-------------------------------------------------------
Confidence            220     0               0                                                       


Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH
Q psy8454         736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT  815 (936)
Q Consensus       736 ~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa  815 (936)
                                                                                   .......|..|.||||+|+
T Consensus        80 -------------------------------------------------------------~~~~~~~d~~g~t~L~~A~   98 (256)
T 2etb_A           80 -------------------------------------------------------------NAQCTDEFYQGHSALHIAI   98 (256)
T ss_dssp             -------------------------------------------------------------GCCCCSTTTTTCCHHHHHH
T ss_pred             -------------------------------------------------------------ccccccccccCCCHHHHHH
Confidence                                                                         0012334678999999999


Q ss_pred             HcCCHHHHHHHHhCCCCccccccc------------CCCcHHHHHHhCCCHHHHHHHHh---cCCCCCCCCCCCCCcHHH
Q psy8454         816 SLGHYDLVRLLINYRADINIVTRV------------KQLTPLHIACQNNNLSIVRLLLA---AKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       816 ~~g~~~~v~~LL~~g~~v~~~~~~------------~g~TpLh~A~~~g~~~iv~~LL~---~g~~dvn~~d~~g~TpL~  880 (936)
                      ..|+.+++++|+++|++++..+..            .|.||||+|+..|+.+++++|++   .| +++|.+|..|+||||
T Consensus        99 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh  177 (256)
T 2etb_A           99 EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLH  177 (256)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHH
Confidence            999999999999999999998832            29999999999999999999999   77 999999999999999


Q ss_pred             HHHH--cCCHH-------HHHHHHHcCCCC-------cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         881 YAAI--NNHTN-------LATLLLKSGARP-------QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       881 ~A~~--~g~~~-------iv~~LL~~Ga~~-------~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|++.|+.+++++|+++|+.
T Consensus       178 ~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            9999  88998       999999999999       99999999999999999999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.5e-29  Score=255.40  Aligned_cols=95  Identities=29%  Similarity=0.336  Sum_probs=72.0

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCcccccccCCCcHHHHHHhCCC-----HHHHHHHHhcCCCCCCCCCCCC
Q psy8454         802 ICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVTRVKQLTPLHIACQNNN-----LSIVRLLLAAKQCNVNAQDYRG  875 (936)
Q Consensus       802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g-~~v~~~~~~~g~TpLh~A~~~g~-----~~iv~~LL~~g~~dvn~~d~~g  875 (936)
                      ..+..|.||||+|+..|+.+++++|+++| ++++..+ ..|.||||+|+..|+     .+++++|+++| ++++.+|..|
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g  178 (201)
T 3hra_A          101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN-DFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSG  178 (201)
T ss_dssp             CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC-TTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTS
T ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC-CCCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCccCCCC
Confidence            33556667777777777777777777777 6777776 677777777777776     77888888877 7888888888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC
Q psy8454         876 NTALHYAAINNHTNLATLLLKSG  898 (936)
Q Consensus       876 ~TpL~~A~~~g~~~iv~~LL~~G  898 (936)
                      +||||+|++.|+.+++++|+++|
T Consensus       179 ~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          179 RTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCHHHHHHHcCCHhHHHHHHhcC
Confidence            88888888888888888888766

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=9.2e-29  Score=242.35  Aligned_cols=159  Identities=36%  Similarity=0.568  Sum_probs=146.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      ++|+.|+++|+.++|+.||+.|++.+                                 .+|..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn---------------------------------~~d~~g~t~l~~a~~~~~~~~   52 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVN---------------------------------ASDSDGRTPLHHAAENGHKEV   52 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT---------------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------CcCCCCCCHHHHHHHcCCHHH
Confidence            47999999999999999999987643                                 378899999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN  617 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~  617 (936)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|      
T Consensus        53 ~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g------  126 (169)
T 4gpm_A           53 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG------  126 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------
T ss_pred             HHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999865      


Q ss_pred             cCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454         618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL  655 (936)
Q Consensus       618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  655 (936)
                      ++++.+|..|.|||++|++.|+.+++++|+++|++++.
T Consensus       127 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            67899999999999999999999999999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=9.2e-30  Score=270.06  Aligned_cols=133  Identities=29%  Similarity=0.313  Sum_probs=124.7

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccc-------------cCCCcHHHHHHhCCCHHHHHHHHh---c
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR-------------VKQLTPLHIACQNNNLSIVRLLLA---A  863 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~-------------~~g~TpLh~A~~~g~~~iv~~LL~---~  863 (936)
                      ++..|..|.||||+||..|+.+++++|+++|++++..+.             ..|.||||+|+..|+.++|++|++   .
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            355577899999999999999999999999999999884             479999999999999999999999   7


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------cCcccCCCcHHHHHHHcCCHHHHHHH
Q psy8454         864 KQCNVNAQDYRGNTALHYAAINNH---------TNLATLLLKSGARP-------QIKNHYGQTCLHMAQQMTSLSLVRVL  927 (936)
Q Consensus       864 g~~dvn~~d~~g~TpL~~A~~~g~---------~~iv~~LL~~Ga~~-------~~~d~~g~T~L~~A~~~g~~~iv~~L  927 (936)
                      | +++|.+|..|+||||+|+..|+         .+++++|+++|+++       +.+|..|+||||+|++.|+.+++++|
T Consensus       166 g-a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          166 Q-ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             C-CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             C-CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence            7 9999999999999999999888         79999999999999       77999999999999999999999999


Q ss_pred             hhhCCC
Q psy8454         928 THEAPF  933 (936)
Q Consensus       928 l~~~~~  933 (936)
                      +++|+.
T Consensus       245 l~~g~~  250 (260)
T 3jxi_A          245 IRREIA  250 (260)
T ss_dssp             HHHHHH
T ss_pred             HHhCCC
Confidence            999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.7e-29  Score=265.43  Aligned_cols=214  Identities=19%  Similarity=0.218  Sum_probs=164.3

Q ss_pred             CCCcHHHHHHHhCcHHH----HHHHHhCCCCCCcCC----CCCCcHHHHHH---HcCcHHHHHHHHhcccccc-----cc
Q psy8454         554 CGCSPLHYAATRGHQNV----LLLLLHSGASINLTD----NEGNTALHLAT---NNGHETCVKALIYFNEQEV-----LN  617 (936)
Q Consensus       554 ~g~t~L~~A~~~g~~~i----v~~Ll~~g~~~~~~d----~~g~t~L~~A~---~~g~~eiv~~Ll~~~~~~~-----~~  617 (936)
                      .++|+||.|++.|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.++...     ..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            45556666666666553    333334666665444    45666666666   4566666666666553211     12


Q ss_pred             cCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCC
Q psy8454         618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVS  697 (936)
Q Consensus       618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  697 (936)
                      ..++..+..|.||||+|+..|+.+++++|+++|++++..+..+..                                   
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-----------------------------------  128 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-----------------------------------  128 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-----------------------------------
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-----------------------------------
Confidence            445666779999999999999999999999999998876542100                                   


Q ss_pred             CCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccch
Q psy8454         698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQ  777 (936)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~  777 (936)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (260)
T 3jxi_A          129 --------------------------------------------------------------------------------  128 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCcccccccCCCcHHHHHHhCCC-
Q psy8454         778 CAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN---YRADINIVTRVKQLTPLHIACQNNN-  853 (936)
Q Consensus       778 ~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~---~g~~v~~~~~~~g~TpLh~A~~~g~-  853 (936)
                                        ...+.+..+..|.||||+|+..|+.+++++|++   +|++++.++ ..|+||||+|+..|+ 
T Consensus       129 ------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d-~~g~TpLh~A~~~~~~  189 (260)
T 3jxi_A          129 ------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD-SRGNTVLHALVAIADN  189 (260)
T ss_dssp             ------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC-TTSCCHHHHHHHHCCS
T ss_pred             ------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccC-CCCCcHHHHHHHhccC
Confidence                              001123446789999999999999999999999   999999999 899999999999888 


Q ss_pred             --------HHHHHHHHhcCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy8454         854 --------LSIVRLLLAAKQCNV-------NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ  902 (936)
Q Consensus       854 --------~~iv~~LL~~g~~dv-------n~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~  902 (936)
                              .+++++|+++| +++       +.+|..|+||||+|++.|+.++|++|+++|++..
T Consensus       190 ~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          190 TRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                    79999999999 888       7799999999999999999999999999987654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=261.54  Aligned_cols=192  Identities=22%  Similarity=0.309  Sum_probs=166.7

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCC-CCCCcccCCCChhhhh
Q psy8454         589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA-NPTLENKRKVTPLQNA  667 (936)
Q Consensus       589 ~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~~~~d~~g~t~l~~a  667 (936)
                      .+++|.|+..|+.+.++.++..+.    ...+|..|..|.||||+|++.|+.+++++|++.|+ +++..+..        
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~--------  144 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA--------  144 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTT--------
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCC--------
Confidence            567889999999999999987652    23478899999999999999999999999999987 65555444        


Q ss_pred             hchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHH
Q psy8454         668 NNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALI  747 (936)
Q Consensus       668 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai  747 (936)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (276)
T 4hbd_A          145 --------------------------------------------------------------------------------  144 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH-----HcCCHHH
Q psy8454         748 ENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT-----SLGHYDL  822 (936)
Q Consensus       748 ~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa-----~~g~~~~  822 (936)
                                                                                 |.||||+|+     ..++.++
T Consensus       145 -----------------------------------------------------------g~tpL~~a~~~~~~~~~~~~~  165 (276)
T 4hbd_A          145 -----------------------------------------------------------GYSPIMLTALATLKTQDDIET  165 (276)
T ss_dssp             -----------------------------------------------------------SCCHHHHGGGCCCCSHHHHHH
T ss_pred             -----------------------------------------------------------CCCHHHHHHHHHhhhhhhHHH
Confidence                                                                       455555555     4578899


Q ss_pred             HHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCC
Q psy8454         823 VRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK-SGARP  901 (936)
Q Consensus       823 v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~  901 (936)
                      +++|++.|..++..+ ..|.||||+|+..|+.++|++|++.| +|+|.+|..|+||||+|+..|+.++|++|++ +|+++
T Consensus       166 v~~Ll~~g~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~  243 (276)
T 4hbd_A          166 VLQLFRLGNINAKAS-QAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI  243 (276)
T ss_dssp             HHHHHHHSCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT
T ss_pred             HHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence            999999998888777 78999999999999999999999998 9999999999999999999999999999998 89999


Q ss_pred             cCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         902 QIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       902 ~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +.+|..|.||||+|+..|+.+++++|+++...
T Consensus       244 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          244 SLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            99999999999999999999999999988653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.4e-27  Score=240.61  Aligned_cols=129  Identities=21%  Similarity=0.236  Sum_probs=122.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||
T Consensus        62 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~  139 (192)
T 2rfm_A           62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLI  139 (192)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHH
T ss_pred             ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHH
Confidence            3346678899999999999999999999999999998 89999999999999999999999998 999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       881 ~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|++++
T Consensus       140 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=6e-27  Score=230.61  Aligned_cols=162  Identities=27%  Similarity=0.432  Sum_probs=149.7

Q ss_pred             chhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHH
Q psy8454         733 NITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALH  812 (936)
Q Consensus       733 ~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~  812 (936)
                      ........++++.|+..|+.+++++|++.                                   |++++..+..|.||||
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-----------------------------------g~~~~~~~~~g~t~L~   52 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-----------------------------------GADVNAEDASGWTPLH   52 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHT-----------------------------------TCCTTCCCTTSCCHHH
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHC-----------------------------------CCCCCCCCCCCCCHHH
Confidence            34455677899999999999999999964                                   4557888999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy8454         813 IATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT  892 (936)
Q Consensus       813 ~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~  892 (936)
                      +|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.|+.++++
T Consensus        53 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~  130 (169)
T 2y1l_E           53 LAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVE  130 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999998 89999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         893 LLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       893 ~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +|+++|++++.+|..|.|||++|++.|+.+++++|++.|
T Consensus       131 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          131 VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=3.4e-27  Score=231.92  Aligned_cols=134  Identities=30%  Similarity=0.483  Sum_probs=127.7

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL  879 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL  879 (936)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|.|||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L  106 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPL  106 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHH
T ss_pred             cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHH
Confidence            46668889999999999999999999999999999998 89999999999999999999999998 99999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      |+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+++++.++
T Consensus       107 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          107 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=6.5e-30  Score=282.93  Aligned_cols=74  Identities=18%  Similarity=0.092  Sum_probs=37.5

Q ss_pred             CHHHHHHHHhcCCCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHh
Q psy8454         853 NLSIVRLLLAAKQCN----VNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT  928 (936)
Q Consensus       853 ~~~iv~~LL~~g~~d----vn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll  928 (936)
                      ..+.+++|++.+.+.    .......+.||||+|++.|+.++|++|++.|   .+++..|.|++.+|...|+.|+++.-+
T Consensus       293 ~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             GHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred             HHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence            355667777643111    1122335679999999999999999999875   567889999999999999999998754


Q ss_pred             h
Q psy8454         929 H  929 (936)
Q Consensus       929 ~  929 (936)
                      .
T Consensus       370 ~  370 (376)
T 2aja_A          370 E  370 (376)
T ss_dssp             -
T ss_pred             H
Confidence            4

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.4e-26  Score=226.15  Aligned_cols=158  Identities=23%  Similarity=0.300  Sum_probs=147.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc
Q psy8454         738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL  817 (936)
Q Consensus       738 ~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~  817 (936)
                      ...++|+.|+..|+.+++++|++.                                   |++++..+..|.||||+|+. 
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-----------------------------------~~~~~~~~~~g~t~L~~A~~-   47 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-----------------------------------NVNVNAQNGFGRTALQVMKL-   47 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-----------------------------------CCCTTCCCTTSCCHHHHCCS-
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-----------------------------------CCCccccCccCccHHHHHHc-
Confidence            346899999999999999999964                                   45578889999999999999 


Q ss_pred             CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454         818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS  897 (936)
Q Consensus       818 g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~  897 (936)
                      |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.|+.+++++|+++
T Consensus        48 ~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  125 (162)
T 1ihb_A           48 GNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH  125 (162)
T ss_dssp             SCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999998 89999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCC-CcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         898 GAR-PQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       898 Ga~-~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      |++ ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       126 g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            998 599999999999999999999999999999874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=1.3e-26  Score=228.89  Aligned_cols=159  Identities=25%  Similarity=0.366  Sum_probs=149.3

Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH  819 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~  819 (936)
                      .++|+.|+..|+.++++++++.+..                                  .++..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~----------------------------------~~~~~~~~g~t~L~~A~~~~~   48 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDN----------------------------------LVNKPDERGFTPLIWASAFGE   48 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSG----------------------------------GGGCCCTTSCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcc----------------------------------cccCCCCCCCCHHHHHHHcCC
Confidence            4579999999999999999975532                                  267789999999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA  899 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga  899 (936)
                      .+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus        49 ~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A           49 IETVRFLLEWGADPHILA-KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA  126 (172)
T ss_dssp             HHHHHHHHHHTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCchhhc-ccCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999998 89999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      +++.+|..|.||||+|+..|+.+++++|+++++.+
T Consensus       127 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A          127 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2.8e-26  Score=224.84  Aligned_cols=160  Identities=26%  Similarity=0.362  Sum_probs=147.9

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH
Q psy8454         736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT  815 (936)
Q Consensus       736 ~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa  815 (936)
                      +....++|+.|+..|+.+++++|++..                                  +.+++..+..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------------~~~~~~~~~~g~t~L~~A~   50 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ----------------------------------SVNCRDIEGRQSTPLHFAA   50 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT----------------------------------TTTCCCTTTTCCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC----------------------------------CCCccccccCCCCHHHHHH
Confidence            446778999999999999999999743                                  2345677888999999999


Q ss_pred             HcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8454         816 SLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL  895 (936)
Q Consensus       816 ~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL  895 (936)
                      ..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus        51 ~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  128 (165)
T 3twr_A           51 GYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLL  128 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcChHHHHHHHHhcCCCCCccC-CCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999 89999999999999999999999999 999999999999999999999999999999


Q ss_pred             HcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       896 ~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      ++|++++.+|..|.||+|+|++ |+.+++++|+++|+
T Consensus       129 ~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          129 QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999887 99999999999986

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=9.3e-27  Score=248.77  Aligned_cols=94  Identities=33%  Similarity=0.480  Sum_probs=77.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      +..|.||||+|+.+|+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|++..+++++.+|..|+||||+|+
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~  258 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQD-DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL  258 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHH
Confidence            5567788888888888888888888888888887 788888888888888888888888333888888888888888888


Q ss_pred             HcCCHHHHHHHHHcC
Q psy8454         884 INNHTNLATLLLKSG  898 (936)
Q Consensus       884 ~~g~~~iv~~LL~~G  898 (936)
                      +.|+.+++++|++++
T Consensus       259 ~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          259 DAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTCHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHhcc
Confidence            888888888888754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=6.5e-26  Score=219.19  Aligned_cols=150  Identities=25%  Similarity=0.378  Sum_probs=142.0

Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH  819 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~  819 (936)
                      .++|+.|+..|+.+++++|++.+.                                   +++ .+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~-----------------------------------~~~-~~~~g~t~L~~A~~~~~   46 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGA-----------------------------------PFT-TDWLGTSPLHLAAQYGH   46 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC-----------------------------------CCC-CCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCC-----------------------------------CCC-cCCCCCCHHHHHHHcCC
Confidence            578999999999999999997543                                   233 47789999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA  899 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga  899 (936)
                      .+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus        47 ~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           47 FSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999998 89999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CCcCcccCCCcHHHHHHHcCCHHHHHHH
Q psy8454         900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL  927 (936)
Q Consensus       900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~L  927 (936)
                      +++.+|..|.|||++|+..|+.+++++|
T Consensus       125 ~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          125 DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999998

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=3.9e-26  Score=225.49  Aligned_cols=169  Identities=28%  Similarity=0.416  Sum_probs=151.8

Q ss_pred             hHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHH
Q psy8454         457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIK  536 (936)
Q Consensus       457 ~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  536 (936)
                      .++|+.|+..|+.+.|+.|++.+...                                ++.++..|.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~   50 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNL--------------------------------VNKPDERGFTPLIWASAFGEIE   50 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGG--------------------------------GGCCCTTSCCHHHHHHHTTCHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCccc--------------------------------ccCCCCCCCCHHHHHHHcCCHH
Confidence            35899999999999999999987653                                2236788999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccccc
Q psy8454         537 VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL  616 (936)
Q Consensus       537 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~  616 (936)
                      ++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|     
T Consensus        51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----  125 (172)
T 3v30_A           51 TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-----  125 (172)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----
T ss_pred             HHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865     


Q ss_pred             ccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCCh
Q psy8454         617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTP  663 (936)
Q Consensus       617 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~  663 (936)
                       ++++..+..|.|||++|++.|+.+++++|+++|++....+..+.||
T Consensus       126 -a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          126 -ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             -CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence             6788999999999999999999999999999999988888877776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.8e-28  Score=271.47  Aligned_cols=173  Identities=16%  Similarity=0.146  Sum_probs=140.4

Q ss_pred             hhhHHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCC
Q psy8454         440 TQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMD  519 (936)
Q Consensus       440 ~~~~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (936)
                      ++++.++++.+.+ ..+.|+|+.|++.|+.++|++|++.+.....                              .+..+
T Consensus        77 ~~~~~~~~l~~~g-~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~------------------------------~~~~~  125 (376)
T 2aja_A           77 NAKQLWSDAHKKG-IKSEVICFVAAITGCSSALDTLCLLLTSDEI------------------------------VKVIQ  125 (376)
T ss_dssp             TCTTHHHHHHHHT-CCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------------------------------CC--C
T ss_pred             CCHHHHHHHHHcC-CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH------------------------------HHHhc
Confidence            4556666666554 4556999999999999999999998863211                              11134


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCc--CCCCCCcHHHH
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL--TDNEGNTALHL  594 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~--~d~~g~t~L~~  594 (936)
                      ..|.||||+|+..|+.++|++|+++|+++   +..+.+ .||||+|+..|+.+++++|+++|++++.  .|..|.||||+
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~  204 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW  204 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHH
Confidence            45789999999999999999999999752   222223 8999999999999999999999999887  88889999999


Q ss_pred             HH-HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcc
Q psy8454         595 AT-NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN  657 (936)
Q Consensus       595 A~-~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d  657 (936)
                      |+ ..|+.++|++|++.|+             .|.|||+.|++.|+.+++++|++.|++++..+
T Consensus       205 Aa~~~G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~  255 (376)
T 2aja_A          205 AAVGRGHHNVINFLLDCPV-------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH  255 (376)
T ss_dssp             HHSTTCCHHHHHHHTTSHH-------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCC-------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc
Confidence            99 9999999999998652             27899999999999999999999988765443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=5.2e-26  Score=226.22  Aligned_cols=162  Identities=25%  Similarity=0.350  Sum_probs=151.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHc
Q psy8454         738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL  817 (936)
Q Consensus       738 ~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~  817 (936)
                      ...++|+.|+..|+.+++++|++..                                  +.+++..+..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------------~~~~~~~~~~g~t~L~~A~~~   49 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNT----------------------------------ENDLNQGDDHGFSPLHWACRE   49 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCT----------------------------------TSCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcC----------------------------------cccccccCCCCCCHHHHHHHc
Confidence            3456799999999999999999743                                  344788899999999999999


Q ss_pred             CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy8454         818 GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS  897 (936)
Q Consensus       818 g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~  897 (936)
                      |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| +++|.+|..|.||||+|+..|+.+++++|+++
T Consensus        50 ~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  127 (179)
T 3f6q_A           50 GRSAVVEMLIMRGARINVMN-RGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN  127 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999998 89999999999999999999999998 99999999999999999999999999999999


Q ss_pred             CCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         898 GARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       898 Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      |++++.+|..|.|||++|+..++.+++++|++.|+.+.
T Consensus       128 ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999999999999999999999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=216.41  Aligned_cols=154  Identities=21%  Similarity=0.296  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcC
Q psy8454         739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLG  818 (936)
Q Consensus       739 ~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g  818 (936)
                      ..++|+.|+..|+.+++++|++.                                  .+.+++..+..|.||||+ +..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~----------------------------------~~~~~~~~~~~g~t~L~~-~~~~   46 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR----------------------------------ELVHPDALNRFGKTALQV-MMFG   46 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT----------------------------------TCCCTTCCCTTSCCHHHH-SCTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh----------------------------------hCcCccccCCCCCcHHHH-HHcC
Confidence            46899999999999999999974                                  123578889999999999 9999


Q ss_pred             CHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy8454         819 HYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG  898 (936)
Q Consensus       819 ~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~G  898 (936)
                      +.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|++.|+.+++++|+++ 
T Consensus        47 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-  123 (156)
T 1bd8_A           47 STAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-  123 (156)
T ss_dssp             CHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-
T ss_pred             CHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-
Confidence            9999999999999999999 89999999999999999999999999 99999999999999999999999999999999 


Q ss_pred             CCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         899 ARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       899 a~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       124 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999999999975

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=2.4e-25  Score=217.44  Aligned_cols=159  Identities=30%  Similarity=0.433  Sum_probs=145.5

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      ...++|+.|+..|+.++|++|++.+.+.                                 +.++..|.||||+|+. |+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---------------------------------~~~~~~g~t~L~~A~~-~~   49 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV---------------------------------NAQNGFGRTALQVMKL-GN   49 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT---------------------------------TCCCTTSCCHHHHCCS-SC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc---------------------------------cccCccCccHHHHHHc-Cc
Confidence            4568999999999999999999887543                                 2367789999999999 99


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454         535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE  614 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~  614 (936)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++++. 
T Consensus        50 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-  128 (162)
T 1ihb_A           50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-  128 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997642 


Q ss_pred             ccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454         615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN  652 (936)
Q Consensus       615 ~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  652 (936)
                          .++..+..|.|||++|++.|+.+++++|+++|++
T Consensus       129 ----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          129 ----NVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence                3588899999999999999999999999999985

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=3e-25  Score=223.47  Aligned_cols=169  Identities=25%  Similarity=0.366  Sum_probs=153.1

Q ss_pred             HHHhhhhhcccCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCC
Q psy8454         443 KVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRG  522 (936)
Q Consensus       443 ~~~~~l~~~~~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  522 (936)
                      .....+.+..+..+.++|+.|+..|+.++|++|++.+.+..                                 .++..|
T Consensus        22 ~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------------------------------~~~~~g   68 (192)
T 2rfm_A           22 QNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE---------------------------------DKDIEG   68 (192)
T ss_dssp             HTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT---------------------------------CCCTTS
T ss_pred             hhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc---------------------------------cccccC
Confidence            34455677788889999999999999999999999886533                                 267789


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHH
Q psy8454         523 FTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHET  602 (936)
Q Consensus       523 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~e  602 (936)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  148 (192)
T 2rfm_A           69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE  148 (192)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454         603 CVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG  650 (936)
Q Consensus       603 iv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  650 (936)
                      ++++|+++|      ++++.++..|.|||++|+..|+.+++++|+++|
T Consensus       149 ~v~~Ll~~g------a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          149 IVKKLLELG------ADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTT------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCC------CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999865      578889999999999999999999999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.9e-28  Score=253.79  Aligned_cols=119  Identities=17%  Similarity=0.079  Sum_probs=68.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHH--HhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIA--CQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY  881 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A--~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~  881 (936)
                      |..|.||||+|+..|+.+++++|+++|++++..++..|.||||+|  +..|+.+++++|++.| ++++.+|..|.||++.
T Consensus        84 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~  162 (229)
T 2vge_A           84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWD  162 (229)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHH
Confidence            344555555555566666666666666666555434566666666  5666666666666665 5666666666666654


Q ss_pred             HHHcCCHHHHHHHHHcCCC--CcCcccCCCcHHHHHHHcCCHHHHHH
Q psy8454         882 AAINNHTNLATLLLKSGAR--PQIKNHYGQTCLHMAQQMTSLSLVRV  926 (936)
Q Consensus       882 A~~~g~~~iv~~LL~~Ga~--~~~~d~~g~T~L~~A~~~g~~~iv~~  926 (936)
                      ++..+   .+++|++.|++  ++.+|..|+||||+|+..|+.++|+.
T Consensus       163 ~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          163 YSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             BCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             Hhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            43332   22455556665  44556666666666666666655543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=6.4e-25  Score=216.08  Aligned_cols=158  Identities=34%  Similarity=0.518  Sum_probs=141.2

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+.++|+.|++.|+.++|++|++.+.+.+                                 .++..|.||||+|+..|
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~---------------------------------~~~~~g~t~L~~A~~~~   58 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVN---------------------------------AEDASGWTPLHLAAFNG   58 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTT---------------------------------CCCTTSCCHHHHHHHTT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCC---------------------------------CCCCCCCCHHHHHHHcC
Confidence            345678999999999999999999876533                                 26778999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++  
T Consensus        59 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--  136 (169)
T 2y1l_E           59 HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG--  136 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999865  


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG  650 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  650 (936)
                          ++++.+|..|.|||++|++.|+.+++++|++.|
T Consensus       137 ----~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          137 ----ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ----CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                577888999999999999999999999999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.7e-27  Score=246.62  Aligned_cols=144  Identities=25%  Similarity=0.294  Sum_probs=135.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN  597 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  597 (936)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcccccccccCccccc-CCCChHHHHH--HHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVN-NQGDSPLHAA--ARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA  667 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~-~~g~t~L~~A--~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  667 (936)
                      .|+.+++++|+++|      ++++..+ ..|.|||++|  +..|+.+++++|+++|++++..+..|.||++.+
T Consensus        97 ~g~~~~v~~Ll~~g------a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~  163 (229)
T 2vge_A           97 CNDTVICMALVQHG------AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY  163 (229)
T ss_dssp             TTCHHHHHHHHTTT------CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCB
T ss_pred             cCCHHHHHHHHHcC------CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHH
Confidence            99999999999865      5778776 6999999999  999999999999999999999998888888754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.1e-25  Score=212.75  Aligned_cols=134  Identities=20%  Similarity=0.256  Sum_probs=129.7

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-C
Q psy8454         797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYR-G  875 (936)
Q Consensus       797 ~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~-g  875 (936)
                      +.+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.+++++|+++| ++++.+|.. |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g   78 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-RFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATL   78 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC-CCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCC
Confidence            45789999999999999999999999999999999999998 899999999999 9999999999999 999999999 9


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         876 NTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       876 ~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999863

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=4.6e-25  Score=219.37  Aligned_cols=168  Identities=27%  Similarity=0.356  Sum_probs=147.7

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      ...++|+.|++.|+.++|+.|++.+...                                ++.++..|.||||+|+..|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~   51 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTEND--------------------------------LNQGDDHGFSPLHWACREGR   51 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSC--------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCccc--------------------------------ccccCCCCCCHHHHHHHcCc
Confidence            4556899999999999999999886432                                23367889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454         535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE  614 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~  614 (936)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|   
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---  128 (179)
T 3f6q_A           52 SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG---  128 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865   


Q ss_pred             ccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCC
Q psy8454         615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK  660 (936)
Q Consensus       615 ~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g  660 (936)
                         ++++..+..|.|||++|+..++.+++++|++.|++++..+..+
T Consensus       129 ---a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          129 ---ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             ---CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             ---CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence               5788899999999999999999999999999999988765443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=1.3e-24  Score=213.45  Aligned_cols=158  Identities=28%  Similarity=0.386  Sum_probs=136.2

Q ss_pred             ChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         456 SLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI  535 (936)
Q Consensus       456 ~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  535 (936)
                      +.++|+.|+..|+.++|++|++.+.+.                                 +.++..|.||||+|+..|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~---------------------------------~~~~~~g~t~L~~A~~~~~~   49 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI---------------------------------NHTDEEGFTPLMWAAAHGQI   49 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT---------------------------------TCCCTTSCCHHHHHHHTTCH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc---------------------------------CCCCCCCCCHHHHHHHCCCH
Confidence            456889999999999999999887543                                 23677888999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccc
Q psy8454         536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV  615 (936)
Q Consensus       536 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~  615 (936)
                      +++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|    
T Consensus        50 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----  125 (167)
T 3v31_A           50 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG----  125 (167)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----
Confidence            9999999999999988888999999999999999999999999999999999999999999999999999999865    


Q ss_pred             cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454         616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN  652 (936)
Q Consensus       616 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  652 (936)
                        ++++..+..|.|||++|++.|+.+++++|++++.+
T Consensus       126 --~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          126 --ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence              56788888899999999999999999999887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=2.5e-24  Score=208.04  Aligned_cols=150  Identities=30%  Similarity=0.469  Sum_probs=136.4

Q ss_pred             hHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHH
Q psy8454         457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIK  536 (936)
Q Consensus       457 ~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  536 (936)
                      .++|+.|++.|+.++|++|++.+.+..                                  .+..|.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~----------------------------------~~~~g~t~L~~A~~~~~~~   48 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT----------------------------------TDWLGTSPLHLAAQYGHFS   48 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----------------------------------CCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC----------------------------------cCCCCCCHHHHHHHcCCHH
Confidence            468999999999999999999876431                                  4567899999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccccc
Q psy8454         537 VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL  616 (936)
Q Consensus       537 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~  616 (936)
                      ++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|     
T Consensus        49 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----  123 (153)
T 1awc_B           49 TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-----  123 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865     


Q ss_pred             ccCcccccCCCChHHHHHHHhCCHHHHHHH
Q psy8454         617 NLNINAVNNQGDSPLHAAARWGYTSIIQLL  646 (936)
Q Consensus       617 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~L  646 (936)
                       ++++.++..|.|||++|++.|+.+++++|
T Consensus       124 -a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          124 -ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence             57888999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=7e-25  Score=214.86  Aligned_cols=160  Identities=33%  Similarity=0.449  Sum_probs=137.2

Q ss_pred             cCCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHc
Q psy8454         453 KISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALY  532 (936)
Q Consensus       453 ~~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  532 (936)
                      +..+.++|+.|++.|+.+.|+.|++.+...                                .+..+..|.||||+|+..
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~   52 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVN--------------------------------CRDIEGRQSTPLHFAAGY   52 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTT--------------------------------CCCTTTTCCCHHHHHHHT
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCC--------------------------------ccccccCCCCHHHHHHHc
Confidence            345678999999999999999998764322                                223667788999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454         533 GRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE  612 (936)
Q Consensus       533 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~  612 (936)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++ 
T Consensus        53 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-  131 (165)
T 3twr_A           53 NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-  131 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999865 


Q ss_pred             ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCC
Q psy8454         613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA  651 (936)
Q Consensus       613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga  651 (936)
                           ++++.+|..|.|||++|++ |+.+++++|+++|+
T Consensus       132 -----a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          132 -----ADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             -----CCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             -----CCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                 5778889999999999776 88999999998875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=7.9e-24  Score=205.17  Aligned_cols=154  Identities=31%  Similarity=0.468  Sum_probs=141.6

Q ss_pred             ChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         456 SLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI  535 (936)
Q Consensus       456 ~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  535 (936)
                      +.++|+.|++.|+.+.++.|++....                                .++..+..|.||||+ +..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~~~~g~t~L~~-~~~~~~   48 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELV--------------------------------HPDALNRFGKTALQV-MMFGST   48 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------------CTTCCCTTSCCHHHH-SCTTCH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCc--------------------------------CccccCCCCCcHHHH-HHcCCH
Confidence            45799999999999999999998211                                223367889999999 999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccc
Q psy8454         536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV  615 (936)
Q Consensus       536 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~  615 (936)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.     
T Consensus        49 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----  123 (156)
T 1bd8_A           49 AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----  123 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999974     


Q ss_pred             cccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       616 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                        .+++..+..|.|||++|++.|+.+++++|+++
T Consensus       124 --~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          124 --SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             --SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             --cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence              47888999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=3.8e-25  Score=231.03  Aligned_cols=106  Identities=27%  Similarity=0.389  Sum_probs=52.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC-cHH
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN-TAL  879 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~-TpL  879 (936)
                      |..|..|.||||+||..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.++..|. |||
T Consensus        64 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l  141 (239)
T 1ycs_B           64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD-SDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAA  141 (239)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchH
Confidence            3334444555555555555555555555555555444 44555555555555555555555544 45555444443 555


Q ss_pred             HHH--HHcCCHHHHHHHHHcCCCCcCcccCC
Q psy8454         880 HYA--AINNHTNLATLLLKSGARPQIKNHYG  908 (936)
Q Consensus       880 ~~A--~~~g~~~iv~~LL~~Ga~~~~~d~~g  908 (936)
                      |+|  +..|+.+++++|+++|++++..+..+
T Consensus       142 ~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~  172 (239)
T 1ycs_B          142 DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV  172 (239)
T ss_dssp             HHCCSSSTTCCCHHHHHHHHHHHTTTTGGGE
T ss_pred             HHHHHhhhccHHHHHHHHHhhhcccccccce
Confidence            554  44445555555555555544444433

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=5.9e-24  Score=200.82  Aligned_cols=127  Identities=34%  Similarity=0.417  Sum_probs=121.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454         803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA  882 (936)
Q Consensus       803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A  882 (936)
                      ....|.||||+||..|+.+++++|+++|++++..+ ..|.||||+||..|+.+++++|+++| +++|.+|..|+||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHH
Confidence            35668899999999999999999999999999998 89999999999999999999999998 99999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=1.9e-23  Score=194.16  Aligned_cols=126  Identities=40%  Similarity=0.637  Sum_probs=122.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454         806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN  885 (936)
Q Consensus       806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~  885 (936)
                      +|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence            58999999999999999999999999999988 89999999999999999999999998 99999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       886 g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      |+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+.
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.2e-24  Score=216.95  Aligned_cols=152  Identities=15%  Similarity=0.087  Sum_probs=137.1

Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCC-CCCCcHHHHHHHcC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICN-SDGYTALHIATSLG  818 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d-~~g~t~L~~Aa~~g  818 (936)
                      ..+++.|++.|+.+.++.++..+                                     ++..+ ..|.||||+|+.+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~-------------------------------------~~~~~~~~g~T~Lh~A~~~~   49 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKG-------------------------------------YEDKESVLKSNILYDVLRNN   49 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHS-------------------------------------SSCHHHHHTTTHHHHHTTCS
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcC-------------------------------------cccccccCCCCHHHHHHHcC
Confidence            35799999999999999888633                                     23344 67999999999999


Q ss_pred             CH----HHHHHHHhCCCCcccccccCCCcHHHHHHhCCC------HHHHHHHHhcCCCCCCCCCCCCC-cHHHHHHHcC-
Q psy8454         819 HY----DLVRLLINYRADINIVTRVKQLTPLHIACQNNN------LSIVRLLLAAKQCNVNAQDYRGN-TALHYAAINN-  886 (936)
Q Consensus       819 ~~----~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~------~~iv~~LL~~g~~dvn~~d~~g~-TpL~~A~~~g-  886 (936)
                      +.    +++++|+++|++++.++ ..|+||||+|+..|+      .+++++|+++| +|+|.+|..|+ ||||+|+..| 
T Consensus        50 ~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~  127 (186)
T 3t8k_A           50 NDEARYKISMFLINKGADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFV  127 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCCSSCCC-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCS
T ss_pred             CcchHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCC
Confidence            75    59999999999999999 999999999999987      68999999999 99999999999 9999999954 


Q ss_pred             ----CHHHHHHHHH-cCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         887 ----HTNLATLLLK-SGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       887 ----~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                          +.+++++|++ +|++++.+|..|+||||+|++.|+.++|++|.+.
T Consensus       128 ~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence                4569999999 9999999999999999999999999999999864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.4e-24  Score=203.91  Aligned_cols=134  Identities=31%  Similarity=0.434  Sum_probs=122.0

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy8454         797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN  876 (936)
Q Consensus       797 ~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~  876 (936)
                      |+|+ .+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-HAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCC
Confidence            4566 678999999999999999999999999999999998 89999999999999999999999998 99999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       877 TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      ||||+|++.|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|.+++++
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            999999999999999999999999999999999999999999999999999887664

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=7.2e-24  Score=205.49  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCc-HH
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT-AL  879 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~T-pL  879 (936)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+ .|+.+++++|+++| ++++.+|..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence            4567889999999999999999999999999999998 89999999995 99999999999998 999999999999 99


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      |+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.5e-23  Score=203.26  Aligned_cols=146  Identities=23%  Similarity=0.279  Sum_probs=120.2

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCc-HHH
Q psy8454         515 TQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNT-ALH  593 (936)
Q Consensus       515 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t-~L~  593 (936)
                      ....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|++.|++++.+|..|.| |||
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            3446778999999999999999999999999999999999999999996 99999999999999999999999999 999


Q ss_pred             HHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhh
Q psy8454         594 LATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA  667 (936)
Q Consensus       594 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a  667 (936)
                      +|+..|+.+++++|+++|      ++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus        84 ~A~~~~~~~~v~~Ll~~g------a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAG------ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHT------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHCCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            999999999999999865      67899999999999999999999999999999999999999999998744

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=6.2e-24  Score=221.81  Aligned_cols=174  Identities=18%  Similarity=0.166  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         455 SSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGR  534 (936)
Q Consensus       455 ~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  534 (936)
                      .+.++|+.|++.|+.+.++.|++.|.+...                                  +..|.||||.|+..|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~----------------------------------~~~~~t~L~~A~~~g~   49 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF----------------------------------NPLPLALLLDSSLEGE   49 (239)
T ss_dssp             -------------------------------------------------------------------CHHHHHHHHHHTC
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc----------------------------------CchhhHHHHHHHHcCC
Confidence            577899999999999999999999876532                                  3458899999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccccc
Q psy8454         535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQE  614 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~  614 (936)
                      .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|   
T Consensus        50 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---  126 (239)
T 1ycs_B           50 FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG---  126 (239)
T ss_dssp             HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865   


Q ss_pred             ccccCcccccCCCC-hHHHHH--HHhCCHHHHHHHHHCCCCCCCcc---------cCCCChhhhhh
Q psy8454         615 VLNLNINAVNNQGD-SPLHAA--ARWGYTSIIQLLLDHGANPTLEN---------KRKVTPLQNAN  668 (936)
Q Consensus       615 ~~~~~~~~~~~~g~-t~L~~A--~~~g~~~iv~~Ll~~ga~~~~~d---------~~g~t~l~~a~  668 (936)
                         ++++..+..|. ||||+|  +..|+.+++++|++.|++++..+         ..+.++.+.+.
T Consensus       127 ---a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          127 ---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             ---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             ---CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence               57888888877 999999  78899999999999999887764         44556655554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=3.4e-23  Score=195.60  Aligned_cols=132  Identities=24%  Similarity=0.289  Sum_probs=126.5

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCC-CCcHH
Q psy8454         514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNE-GNTAL  592 (936)
Q Consensus       514 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~-g~t~L  592 (936)
                      .++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            566788999999999999999999999999999999999999999999999 9999999999999999999999 99999


Q ss_pred             HHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454         593 HLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN  652 (936)
Q Consensus       593 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  652 (936)
                      |+|+..|+.+++++|++++      ++++.++..|.|||++|++.|+.+++++|+++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~g------a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAG------ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTC------CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999865      57899999999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.3e-23  Score=209.44  Aligned_cols=158  Identities=15%  Similarity=0.085  Sum_probs=139.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH--
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI--  535 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~--  535 (936)
                      ++|+.|++.|+.+.++.+++.+....                                  .+..|.||||+|+..|+.  
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~----------------------------------~~~~g~T~Lh~A~~~~~~~~   53 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDK----------------------------------ESVLKSNILYDVLRNNNDEA   53 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCH----------------------------------HHHHTTTHHHHHTTCSCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccc----------------------------------cccCCCCHHHHHHHcCCcch
Confidence            47999999999999999998764321                                  124589999999999985  


Q ss_pred             --HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc------HHHHHHHHhCCCCCCcCCCCCC-cHHHHHHHcC-----cH
Q psy8454         536 --KVVDLVLELGADTNSQDLCGCSPLHYAATRGH------QNVLLLLLHSGASINLTDNEGN-TALHLATNNG-----HE  601 (936)
Q Consensus       536 --~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~------~~iv~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g-----~~  601 (936)
                        +++++|+++|+++|.+|..|+||||+|+..|+      .+++++|+++|++++.+|..|. ||||+|+..+     +.
T Consensus        54 ~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~  133 (186)
T 3t8k_A           54 RYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI  133 (186)
T ss_dssp             HHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHH
Confidence              59999999999999999999999999999987      6889999999999999999999 9999999944     46


Q ss_pred             HHHHHHHh-cccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454         602 TCVKALIY-FNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL  655 (936)
Q Consensus       602 eiv~~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  655 (936)
                      +++++|++ +|      ++++.+|..|.||||+|++.|+.+++++|.++....+.
T Consensus       134 ~iv~~Ll~~~g------ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          134 PLYKLIFSQSG------LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             HHHHHHHTSTT------CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcC------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            79999998 55      68999999999999999999999999999987544443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2.2e-22  Score=186.31  Aligned_cols=116  Identities=26%  Similarity=0.276  Sum_probs=107.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      +..|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+||..|+.+++++|++.| +++|.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC-TTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccC-CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            5678899999999999999999999999999998 89999999999999999999999998 999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH
Q psy8454         884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSL  921 (936)
Q Consensus       884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~  921 (936)
                      ..|+.++|++|+++|++++.+|..|.||+|+|...+..
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence            99999999999999999999999999999999544333

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.7e-21  Score=180.94  Aligned_cols=126  Identities=48%  Similarity=0.716  Sum_probs=121.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc
Q psy8454         521 RGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH  600 (936)
Q Consensus       521 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  600 (936)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN  652 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  652 (936)
                      .+++++|++++      ++++.++..|.|||++|++.|+.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999865      57888999999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=1.3e-21  Score=184.65  Aligned_cols=127  Identities=28%  Similarity=0.379  Sum_probs=119.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN  597 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  597 (936)
                      ....|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG  650 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  650 (936)
                      .|+.+++++|++++      ++++..|..|.|||++|++.|+.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~g------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHG------ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcC------CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999865      578899999999999999999999999999976

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=3e-22  Score=206.52  Aligned_cols=134  Identities=25%  Similarity=0.325  Sum_probs=119.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHH
Q psy8454         800 INICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTAL  879 (936)
Q Consensus       800 ~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL  879 (936)
                      ++..+..|.||||+||..|+.+++++|++.|++++..+ ..|.||||+||..|+.++|++|++.+++++|.+|..|+|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            34557789999999999999999999999999999998 89999999999999999999999994499999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         880 HYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       880 ~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      |+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++.|++.++..
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            9999999999999999999999999999999999999999999999999887653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=2.2e-21  Score=193.36  Aligned_cols=125  Identities=24%  Similarity=0.268  Sum_probs=116.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCcHHHH
Q psy8454         803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD-YRGNTALHY  881 (936)
Q Consensus       803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d-~~g~TpL~~  881 (936)
                      .+..|.||||.|+..|+.++++.|++ |++++..+ ..|.||||+|+..|+.+++++|+++| +++|.+| ..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHH
Confidence            35688999999999999999999999 99999998 89999999999999999999999998 9999998 899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHc----------------CCHHHHHHHhhh
Q psy8454         882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM----------------TSLSLVRVLTHE  930 (936)
Q Consensus       882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~----------------g~~~iv~~Ll~~  930 (936)
                      |+..|+.+++++|+++|++++.+|..|.||||+|++.                |+.+++++|.++
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999988776                677888888654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=8.6e-21  Score=198.44  Aligned_cols=124  Identities=24%  Similarity=0.270  Sum_probs=118.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC-CCCCcHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQD-YRGNTALHYA  882 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d-~~g~TpL~~A  882 (936)
                      +..|.||||.||..|+.+++++|++ |++++..+ ..|.||||+||..|+.++|++|+++| +++|.+| ..|+||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHH
Confidence            4578999999999999999999999 99999999 89999999999999999999999998 9999998 8899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHH----------------HcCCHHHHHHHhhh
Q psy8454         883 AINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ----------------QMTSLSLVRVLTHE  930 (936)
Q Consensus       883 ~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~----------------~~g~~~iv~~Ll~~  930 (936)
                      +..|+.++|++|+++|++++.+|..|.||||+|+                ..|+.+++++|+++
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999999999999999999999888                66899999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=203.83  Aligned_cols=140  Identities=21%  Similarity=0.257  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCccc------CCCCCCcHHH
Q psy8454         739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI------CNSDGYTALH  812 (936)
Q Consensus       739 ~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~------~d~~g~t~L~  812 (936)
                      ...+|+.|+..|+.+.++.|+..+.+                                   ++.      .+..|.||||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d-----------------------------------~~~~~~~~~~~~~g~t~Lh  195 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQD-----------------------------------FGQPLPGPDAQAPEELVLH  195 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCC-----------------------------------TTSCEECSSSCSCEECHHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCc-----------------------------------ccccCCCcccCCCCccHHH
Confidence            34679999999999999999875544                                   343      5889999999


Q ss_pred             HHHHc---CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy8454         813 IATSL---GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN  889 (936)
Q Consensus       813 ~Aa~~---g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~  889 (936)
                      +|+..   |+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+.+
T Consensus       196 ~A~~~~~~~~~~iv~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~  273 (301)
T 2b0o_E          196 LAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKE  273 (301)
T ss_dssp             HHHHTCCTTTHHHHHHHHHHSSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHhcccCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHH
Confidence            99997   89999999999999999999 89999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcCcccCCCcHHHHHHHcCCH
Q psy8454         890 LATLLLKSGARPQIKNHYGQTCLHMAQQMTSL  921 (936)
Q Consensus       890 iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~  921 (936)
                      ++++|+++|++      .|.||||+|+++|+.
T Consensus       274 iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          274 CEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999986      589999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=6.8e-20  Score=195.11  Aligned_cols=124  Identities=25%  Similarity=0.292  Sum_probs=106.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCccccc-----ccCCCcHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         809 TALHIATSLGHYDLVRLLINYRADINIVT-----RVKQLTPLHIACQN---NNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       809 t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~-----~~~g~TpLh~A~~~---g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      ++|+.|+..|+.+.++.+++.|++++...     +..|.||||+|+..   |+.+++++|+++| +++|.+|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHHH
Confidence            57888888888888888888888855431     27788999999988   8889999999888 889999989999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         881 YAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       881 ~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      +|+..|+.++|++|+++||+++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999887764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.82  E-value=5.1e-20  Score=173.94  Aligned_cols=128  Identities=33%  Similarity=0.438  Sum_probs=75.9

Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCccccc
Q psy8454         545 GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVN  624 (936)
Q Consensus       545 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~  624 (936)
                      |+++ .+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++      ++++.++
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g------~~~~~~~   73 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK------ALVNTTG   73 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CcccCcC
Confidence            3444 45555666666666666666666666666666666666666666666666666666666543      3455556


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHh
Q psy8454         625 NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAY  679 (936)
Q Consensus       625 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~  679 (936)
                      ..|.||||+|++.|+.+++++|+++|++++..|..|.||+++|...+..+++..+
T Consensus        74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             GGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            6666666666666666666666666666666666666666666665555555433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=6.5e-20  Score=160.25  Aligned_cols=91  Identities=42%  Similarity=0.626  Sum_probs=60.0

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCC
Q psy8454         841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS  920 (936)
Q Consensus       841 g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~  920 (936)
                      |+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            556666666666666666666666 6666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhhhCC
Q psy8454         921 LSLVRVLTHEAP  932 (936)
Q Consensus       921 ~~iv~~Ll~~~~  932 (936)
                      .+++++|+++|+
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            666666666654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.1e-19  Score=158.72  Aligned_cols=93  Identities=45%  Similarity=0.692  Sum_probs=89.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHc
Q psy8454         806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAIN  885 (936)
Q Consensus       806 ~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~  885 (936)
                      +|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            48999999999999999999999999999999 89999999999999999999999999 99999999999999999999


Q ss_pred             CCHHHHHHHHHcCCC
Q psy8454         886 NHTNLATLLLKSGAR  900 (936)
Q Consensus       886 g~~~iv~~LL~~Ga~  900 (936)
                      |+.+++++|+++||+
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999985

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=2.9e-19  Score=192.47  Aligned_cols=141  Identities=21%  Similarity=0.208  Sum_probs=125.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHh---CcHHHHHHHHhCCCCCCcCCCCCCc
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLVLELGADTNS------QDLCGCSPLHYAATR---GHQNVLLLLLHSGASINLTDNEGNT  590 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~d~~g~t  590 (936)
                      ..+.++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T  228 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  228 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            3456789999999999999999999999998      688999999999997   8999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhch
Q psy8454         591 ALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNL  670 (936)
Q Consensus       591 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~  670 (936)
                      |||+|+..|+.++|++|+++|      ++++.+|..|.|||++|+..|+.+++++|+++|++      .|.||||+|+..
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~g------ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGR------ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT------CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhc
Confidence            999999999999999999865      67899999999999999999999999999999876      578999999865


Q ss_pred             hH
Q psy8454         671 HV  672 (936)
Q Consensus       671 ~~  672 (936)
                      +.
T Consensus       297 g~  298 (301)
T 2b0o_E          297 VI  298 (301)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=6.8e-20  Score=169.46  Aligned_cols=111  Identities=30%  Similarity=0.338  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q psy8454         519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNN  598 (936)
Q Consensus       519 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~  598 (936)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34567888888888888888888888888888887888888888888888888888888888777777777777777777


Q ss_pred             CcHHHHHHHHhcccccccccCcccccCCCChHHHHHH
Q psy8454         599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA  635 (936)
Q Consensus       599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  635 (936)
                      |+.+++++|++++      ++++.+|..|.|||++|+
T Consensus        84 ~~~~~v~~Ll~~g------a~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           84 GHVSCVKLLLSKG------ADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             TCHHHHHHHHHTT------CCTTCCCTTSCCHHHHCC
T ss_pred             CCHHHHHHHHHcC------CCCCCcCCCCCCHHHHhC
Confidence            7777777777654      456677777777777773

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=3.4e-20  Score=191.10  Aligned_cols=137  Identities=23%  Similarity=0.263  Sum_probs=116.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhC-CCCCCcCCCCCCcHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS-GASINLTDNEGNTALHLAT  596 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~d~~g~t~L~~A~  596 (936)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCC
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK  660 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g  660 (936)
                      ..|+.+++++|+++|      ++++.+|..|.|||++|+..|+.++++.|++.|+.....+..+
T Consensus       149 ~~~~~~~v~~Ll~~g------a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          149 WKGYADIVQLLLAKG------ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHTCHHHHHHHHHHT------CCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HcCCHHHHHHHHHcC------CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            999999999999865      6789999999999999999999999999999999877665443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.2e-19  Score=199.94  Aligned_cols=128  Identities=29%  Similarity=0.301  Sum_probs=120.8

Q ss_pred             CCCCCcHHHHHHHc-CCHHHHHHHHhCCCCcccccc-cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454         804 NSDGYTALHIATSL-GHYDLVRLLINYRADINIVTR-VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY  881 (936)
Q Consensus       804 d~~g~t~L~~Aa~~-g~~~~v~~LL~~g~~v~~~~~-~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~  881 (936)
                      ...+.|+||.|+.. |+.++++.|+++|++++..+. ..|.||||+|+..|+.++|++|+++| +++|.+|..|+||||+
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh~  274 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHH  274 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHH
Confidence            44667999999999 999999999999999998773 68999999999999999999999998 9999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCC
Q psy8454         882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAP  932 (936)
Q Consensus       882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~  932 (936)
                      |+..|+.++|++|+++||+++.+|..|.||||+|+..|+.+++++|+..+.
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999987653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=2.4e-19  Score=178.60  Aligned_cols=139  Identities=29%  Similarity=0.381  Sum_probs=121.9

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+.++|+.|+..|+.++++.|++ +.+                                 ++.++..|.||||+|+..|
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------------------------~~~~d~~g~t~L~~A~~~~   87 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD---------------------------------VDAVDENGRTALLFVAGLG   87 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC---------------------------------TTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC---------------------------------CCCcCCCCCCHHHHHHHcC
Confidence            356789999999999999999998 543                                 2336788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454         534 RIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE  612 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~  612 (936)
                      +.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++            
T Consensus        88 ~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~------------  155 (183)
T 3deo_A           88 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------  155 (183)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH------------
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc------------
Confidence            9999999999999999888 889999999999999999999999999999999999999999986322            


Q ss_pred             ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                                 ...+.++|++|++.|+.+++++|.++
T Consensus       156 -----------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          156 -----------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -----------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence                       13567899999999999999999764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.80  E-value=1e-18  Score=185.97  Aligned_cols=98  Identities=26%  Similarity=0.340  Sum_probs=93.7

Q ss_pred             ccCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCc
Q psy8454         801 NICNSDGYTALHIATSL---GHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNT  877 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~---g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~T  877 (936)
                      +..+..|.||||+|+..   |+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|+++| +|++.+|..|.|
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~t  240 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGET  240 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCC
Confidence            44577899999999999   89999999999999999999 89999999999999999999999998 999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         878 ALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       878 pL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      |||+|+..|+.++|++|+++|++
T Consensus       241 pL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          241 PLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.79  E-value=3e-19  Score=186.65  Aligned_cols=142  Identities=29%  Similarity=0.369  Sum_probs=126.8

Q ss_pred             CCChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcC
Q psy8454         454 ISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYG  533 (936)
Q Consensus       454 ~~~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  533 (936)
                      ..+.++|+.|++.|+.++|+.|++ +.+.                                 +.++..|.||||+|+..|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---------------------------------~~~d~~g~t~L~~A~~~g   88 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV---------------------------------DAVDENGRTALLFVAGLG   88 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT---------------------------------TCBCTTSCBHHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC---------------------------------CCcCCCCCCHHHHHHHCC
Confidence            357789999999999999999998 5433                                 336788999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454         534 RIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE  612 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~  612 (936)
                      +.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..         .    
T Consensus        89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------~----  155 (244)
T 3ui2_A           89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI---------L----  155 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------H----
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH---------H----
Confidence            9999999999999999998 7899999999999999999999999999999999999999999852         1    


Q ss_pred             ccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q psy8454         613 QEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN  652 (936)
Q Consensus       613 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  652 (936)
                                ....+.|||++|++.|+.+++++|++.+.+
T Consensus       156 ----------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          156 ----------KTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ----------TTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ----------hccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                      124688999999999999999999987544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.1e-19  Score=165.96  Aligned_cols=109  Identities=36%  Similarity=0.450  Sum_probs=102.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454         802 ICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY  881 (936)
Q Consensus       802 ~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~  881 (936)
                      .+|.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC-SSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            458899999999999999999999999999999998 89999999999999999999999998 9999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCcccCCCcHH
Q psy8454         882 AAINNHTNLATLLLKSGARPQIKNHYGQTCL  912 (936)
Q Consensus       882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L  912 (936)
                      |+..|+.+++++|+++||+++.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=3.8e-18  Score=187.82  Aligned_cols=145  Identities=23%  Similarity=0.193  Sum_probs=120.1

Q ss_pred             CCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q psy8454         518 MDDRGFTVLHVAALY-GRIKVVDLVLELGADTNSQD--LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL  594 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~  594 (936)
                      ....+.|+||.|+.. |+.++++.|+++|+++|..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            445678999999999 99999999999999999998  899999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCC---CCCcccCCCChhhhhh
Q psy8454         595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN---PTLENKRKVTPLQNAN  668 (936)
Q Consensus       595 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~---~~~~d~~g~t~l~~a~  668 (936)
                      |+..|+.+++++|+++|      ++++..|..|.||||+|+..|+.+++++|+..+..   ....+..+.|+++.+.
T Consensus       275 A~~~g~~~~v~~LL~~G------ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          275 ATILGHTGLACLFLKRG------ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             HHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             HHHcCcHHHHHHHHHCc------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            99999999999999865      67899999999999999999999999999987643   3345556677776654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=1.5e-17  Score=151.50  Aligned_cols=107  Identities=38%  Similarity=0.489  Sum_probs=91.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATN  597 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~  597 (936)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            67788899999999999999999998888888888888999999999999999999998888888888888888888888


Q ss_pred             cCcHHHHHHHHhcccccccccCcccccCCCChH
Q psy8454         598 NGHETCVKALIYFNEQEVLNLNINAVNNQGDSP  630 (936)
Q Consensus       598 ~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~  630 (936)
                      .|+.+++++|+++|      ++++..+..|.||
T Consensus        85 ~~~~~~~~~Ll~~g------a~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAKG------ADVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTTS------SSHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHcC------CCCCcCCcccccc
Confidence            88888888888765      5677777777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=6.3e-17  Score=146.05  Aligned_cols=92  Identities=37%  Similarity=0.447  Sum_probs=47.0

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHH
Q psy8454         801 NICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALH  880 (936)
Q Consensus       801 n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~  880 (936)
                      ...+.+|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+||..|+.+++++|+++| ++++.+|..|+||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHH
Confidence            3345555555555555555555555555555555554 45555555555555555555555554 555555555555555


Q ss_pred             HHHHcCCHHHHHHH
Q psy8454         881 YAAINNHTNLATLL  894 (936)
Q Consensus       881 ~A~~~g~~~iv~~L  894 (936)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            55555555555544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=1.6e-16  Score=143.40  Aligned_cols=88  Identities=30%  Similarity=0.418  Sum_probs=86.2

Q ss_pred             cCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHc
Q psy8454         839 VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM  918 (936)
Q Consensus       839 ~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~  918 (936)
                      ..|.||||+||..|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            78899999999999999999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHH
Q psy8454         919 TSLSLVRVL  927 (936)
Q Consensus       919 g~~~iv~~L  927 (936)
                      |+.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	936
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-54
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d2ot3a1	249	a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor	3e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-24
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-24
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-23
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  193 bits (490), Expect = 1e-54
 Identities = 111/435 (25%), Positives = 173/435 (39%), Gaps = 85/435 (19%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
           T LHVA+  G + +V  +L+ GA  N  ++   +PLH AA  GH  V   LL + A +N 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 584 TDNEGNTALHLATNNGHETCVKALI---------------------------YFNEQEVL 616
              +  T LH A   GH   VK L+                                   
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVA 673
             +   +  +G +PLH AA++G   + +LLL+  A+P    K  +TPL  A   NNL + 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 674 KLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRN 733
           KLL                                          +  +           
Sbjct: 182 KLLLP-------------------------------------RGGSPHSPAWNGYTPLHI 204

Query: 734 ITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCK-EDVVESESRP 792
             +  +VE   +L++       +S  G             PL   A+    ++V      
Sbjct: 205 AAKQNQVEVARSLLQYGGSANAESVQG-----------VTPLHLAAQEGHAEMVA----L 249

Query: 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNN 852
           +  +  N N+ N  G T LH+    GH  +  +LI +   ++  TR+   TPLH+A    
Sbjct: 250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TPLHVASHYG 308

Query: 853 NLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCL 912
           N+ +V+  L   Q +VNA+   G + LH AA   HT++ TLLLK+GA P   +  G T L
Sbjct: 309 NIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 367

Query: 913 HMAQQMTSLSLVRVL 927
            +A+++  +S+  VL
Sbjct: 368 AIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-25
 Identities = 89/389 (22%), Positives = 144/389 (37%), Gaps = 56/389 (14%)

Query: 450 NYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHS 509
           N K     T L   AR+G  + V+ +L+       + +        +  +      L   
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 510 QSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQN 569
           + + +   M  +GFT LHVAA YG+++V +L+LE  A  N+    G +PLH A    + +
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 570 VLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDS 629
           ++ LLL  G S +     G T LH+A         ++L+ +          NA + QG +
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS------ANAESVQGVT 233

Query: 630 PLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNY 689
           PLH AA+ G+  ++ LLL   AN  L NK  +TP           L         P+ + 
Sbjct: 234 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP-----------LHLVAQEGHVPVADV 282

Query: 690 LVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIEN 749
           L+                                  + GV     T +       A    
Sbjct: 283 LI----------------------------------KHGVMVDATTRMGYTPLHVASHYG 308

Query: 750 NEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCK-EDVVESESRPVTDECLNINICNSDGY 808
           N   +       ++          PL Q A+    D+V      +     + N  +SDG 
Sbjct: 309 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL----LLKNGASPNEVSSDGT 364

Query: 809 TALHIATSLGHYDLVRLLINYRADINIVT 837
           T L IA  LG+  +  +L     + + V 
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFVL 393

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-24
 Identities = 70/309 (22%), Positives = 109/309 (35%), Gaps = 58/309 (18%)

Query: 630 PLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKPKPL 686
           PLH A+  G+  I++ LL  GA+P + N +  TPL  A    +  VAK L          
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL---------- 52

Query: 687 YNYLVPKEKVSRPPSPPPTQDKYLDY-SDVNEANISNVNVREGVRPRNITEIKKVEQLFA 745
                                  L   + VN         ++   P           L  
Sbjct: 53  -----------------------LQNKAKVNAKA------KDDQTP-----------LHC 72

Query: 746 LIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNS 805
                   ++K    L N                    +        + ++  +      
Sbjct: 73  AARIGHTNMVK--LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 130

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
            G+T LH+A   G   +  LL+   A  N   +   LTPLH+A  +NNL IV+LL   + 
Sbjct: 131 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLL-LPRG 188

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
            + ++  + G T LH AA  N   +A  LL+ G     ++  G T LH+A Q     +V 
Sbjct: 189 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

Query: 926 VLTHEAPFV 934
           +L  +    
Sbjct: 249 LLLSKQANG 257

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 2e-20
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 842 LTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARP 901
           LTPLH+A    +L IV+ LL     + N  + +  T LH AA   HT +A  LL++ A+ 
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 902 QIKNHYGQTCLHMAQQMTSLSLVRVL 927
             K    QT LH A ++   ++V++L
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLL 85

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-29
 Identities = 47/261 (18%), Positives = 108/261 (41%), Gaps = 24/261 (9%)

Query: 167 RDCIDLLWT-ESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLK 225
           ++ I+ L T    G+EI+++    ++     + + + +  ++Q    +  Y N       
Sbjct: 2   KEFIEFLKTFHKTGQEIYKQTKLFLEGM---HYKRDLSI-EEQSECAQDFYHNVAE---- 53

Query: 226 DNKLRQSISINKYLIDSIKLAVETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQ 285
             +++    +    ++ I   +E Y+   +YK +    T     +D    K IR L  + 
Sbjct: 54  --RMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVT 111

Query: 286 LKDLDIRED-----LYDTVPRARSEISHIDCYSTILGKIGCVRRCISAISKEDTRDKLQG 340
            + L +  +     + D V +A ++I  +D       K+ C+ +C   I   +     + 
Sbjct: 112 PQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF--NAIKITKN 169

Query: 341 NIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEH 400
              + DD LP ++++V+K   P   +++ Y+    F   S +   +D +  T+L  ++  
Sbjct: 170 EPASADDFLPTLIYIVLKGNPPRLQSNIQYIT--RFCNPSRLMTGEDGYYFTNLCCAVAF 227

Query: 401 IK----SGLLIGPSEPEALMS 417
           I+      L +   + +  MS
Sbjct: 228 IEKLDAQSLNLSQEDFDRYMS 248

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-26
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 18/289 (6%)

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLE-NKRKVTPLQNA---NNLHVAKLLNAYVH 681
           + +  L  A +     ++Q LL+ GAN   +  +   TPL NA   +   + +LL  +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 682 KPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVE 741
            P            ++           +L                               
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 742 QLFALIENNEIKLIKSYFGLSNEEKVPDNACHPL-CQCAKCKEDVVESESRPVTDECLNI 800
                   N  +  K       +E++       L     K   +V++     + +   ++
Sbjct: 124 LYKRGANVNLRRKTKED-----QERLRKGGATALMDAAEKGHVEVLK---ILLDEMGADV 175

Query: 801 NICNSDGYTALHIATSLGHY----DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
           N C++ G  AL  A           +  LL+++ AD+N+     + TPL +A +  +L +
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHLGL 234

Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           V+ LL  +   +N  D  G TAL  A       +A LL K GA     +
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 3e-26
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 10/172 (5%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVL-ELGADTN 549
                       A      ++K   + +   G T L  AA  G ++V+ ++L E+GAD N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 550 SQDLCG----CSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVK 605
           + D  G       L  +     + +  LLL  GA +N+    G T L LA    H   V+
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 606 ALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN 657
            L+     E  ++ IN  ++ G + L  A       I +LL   GA+    +
Sbjct: 237 RLL-----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 3e-26
 Identities = 57/321 (17%), Positives = 94/321 (29%), Gaps = 49/321 (15%)

Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNE-GNTALHLATNNGHETCVKALIYFNEQEV 615
             L  A      +++  LL  GA++N  + E G T LH A     E  V+ L+       
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-- 64

Query: 616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKL 675
                      G +P   AA  G   +++L L  GA+    +    T    A      K 
Sbjct: 65  ----PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 676 LNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT 735
           L     +   +      KE                               + G       
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQ-------------------------ERLRKGGATA---- 151

Query: 736 EIKKVEQLFALIENNEIKLIK---SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRP 792
                  L    E   ++++K      G              +       +  VE+ +  
Sbjct: 152 -------LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 793 VTDECLNINICNSDGYTALHIATSLGHYDLVRLLI-NYRADINIVTRVKQLTPLHIACQN 851
           + D   ++N+    G T L +A    H  LV+ L+     +IN        T L +A + 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVEL 263

Query: 852 NNLSIVRLLLAAKQCNVNAQD 872
               I  LL      + +  D
Sbjct: 264 KLKKIAELLCKRG-ASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 5e-23
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 17/243 (6%)

Query: 449 NNYKKISSLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKH 508
           N  ++    T L    ++   D V  +L+        +       L +       +    
Sbjct: 32  NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

Query: 509 SQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC----------GCSP 558
                     D  GFT    AA+YG++K +  + + GA+ N +             G + 
Sbjct: 92  LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151

Query: 559 LHYAATRGHQNVL-LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN 617
           L  AA +GH  VL +LL   GA +N  DN G  AL  A  +  ++ V+A+ +        
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH--G 209

Query: 618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNA---NNLHVA 673
            ++N    +G +PL  A    +  ++Q LL+         +    T L  A       +A
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 674 KLL 676
           +LL
Sbjct: 270 ELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 4e-14
 Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 15/198 (7%)

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
           L   ++ +   +++       +  +           A           +    +  ++N 
Sbjct: 43  LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS--VKLLKLFLSKGADVNE 100

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ---------LTPLHIACQNNN 853
           C+  G+TA   A   G    ++ L    A++N+  + K+          T L  A +  +
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTN----LATLLLKSGARPQIKNHYGQ 909
           + ++++LL     +VNA D  G  AL +A +++  +    +  LLL  GA   ++   G+
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 910 TCLHMAQQMTSLSLVRVL 927
           T L +A +   L LV+ L
Sbjct: 221 TPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 5e-14
 Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 41/181 (22%)

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLL 575
           +++D    +L  A     + +V  +LE GA+ N Q+   G +PLH A     ++++ LLL
Sbjct: 2   AVEDN--HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 576 H---------------------------------SGASINLTDNEGNTALHLATNNGHET 602
                                              GA +N  D  G TA   A   G   
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 603 CVKALI----YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH-GANPTLEN 657
            +K L       N +     +   +   G + L  AA  G+  ++++LLD  GA+    +
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 658 K 658
            
Sbjct: 180 N 180

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 1e-13
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 445 YNKYNNYKKISSLTKLFEFARLGDGDKVRAILQEEN-----KKEDSESLPLCHPLCSCDD 499
             +     +    T L + A  G  + ++ +L E             +  +   L S D 
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 500 CEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSP 558
             EAI               +RG T L +A     + +V  +LE    + N  D  G + 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 559 LHYAATRGHQNVLLLLLHSGASINLTD 585
           L  A     + +  LL   GAS +  D
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 3e-13
 Identities = 32/119 (26%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           +    L  A      DLV+ L+   A++N        TPLH A Q +   IV LLL    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLV 924
             V  +          AAI     L  L L  GA     + YG T    A     +  +
Sbjct: 64  DPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 1e-12
 Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 29/240 (12%)

Query: 458 TKLFEFARLGDGDKVRAILQE----ENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKP 513
             L +  +  D D V+ +L+       ++E+    PL +   +     E I     +   
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHN---AVQMSREDIVELLLRHGA 63

Query: 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL 573
                   G T   +AA+ G +K++ L L  GAD N  D  G +    AA  G    L  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 574 LLHSGASINLTD----------NEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAV 623
           L   GA++NL              G TAL  A   GH   +K L+     + +  ++NA 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL-----DEMGADVNAC 178

Query: 624 NNQGDSPLH----AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +N G + L     ++      +I  LLLDHGA+  +  +R  TPL  A    +L + + L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-07
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 13/145 (8%)

Query: 799 NINICNSD-GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           N+N    + G+T LH A  +   D+V LL+ + AD  +  +      L  A   +   + 
Sbjct: 30  NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

Query: 858 RLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY---------- 907
                +K  +VN  D+ G TA   AA+         L K GA   ++             
Sbjct: 90  L--FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147

Query: 908 GQTCLHMAQQMTSLSLVRVLTHEAP 932
           G T L  A +   + ++++L  E  
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMG 172

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 480 NKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVD 539
           N + +    PL             +     Q        D  G T L +A      K+ +
Sbjct: 213 NVRGERGKTPLIL--AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 540 LVLELGADTNSQDL 553
           L+ + GA T+  DL
Sbjct: 271 LLCKRGASTDCGDL 284

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 15/223 (6%)

Query: 460 LFEFARLGDGDKVRAILQEE----NKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTT 515
           +   A  G  ++++  +  +     + +      L     +C      I     Q     
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHW---ACSAGHTEIVEFLLQLGVPV 63

Query: 516 QSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
              DD G++ LH+AA  GR ++V  +L  GA  N+ +  GC+PLHYAA++    + ++LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
             GA+ +  D+   TA+H A   G+   +  L+Y+          N  + +G++PLH A 
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS------TNIQDTEGNTPLHLAC 177

Query: 636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNA--NNLHVAKLL 676
                   +LL+  GA+  +ENK + TPLQ A      + K +
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 1e-19
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 7/191 (3%)

Query: 458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQS 517
           T L      G  + V  +LQ      D +         +     + I            +
Sbjct: 39  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 98

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
           ++  G T LH AA   R ++  ++LE GA+ +++D    + +H AA +G+  ++ +LL+ 
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 158

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
            AS N+ D EGNT LHLA +       K L+          +I   N +  +PL  A   
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ------GASIYIENKEEKTPLQVAKG- 211

Query: 638 GYTSIIQLLLD 648
           G   I++ +++
Sbjct: 212 GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 4e-19
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +N  N +G T LH A S   +++  +L+   A+ +      + T +H A    NL ++ 
Sbjct: 95  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKGNLKMIH 153

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
           +L    + + N QD  GNT LH A        A LL+  GA   I+N   +T L +A+
Sbjct: 154 IL-LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-14
 Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
                + D  TALH A S GH ++V   +               +PLHIA       IV+
Sbjct: 29  LATRTDQDSRTALHWACSAGHTEIVEF-LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVK 87

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
            LL  K   VNA +  G T LHYAA  N   +A +LL+ GA P  K+HY  T +H A   
Sbjct: 88  ALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 146

Query: 919 TSLSLVRVLTHEAPFV 934
            +L ++ +L +     
Sbjct: 147 GNLKMIHILLYYKAST 162

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 4e-11
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           N +  +    TA+H A + G+  ++ +L+ Y+A  NI    +  TPLH+AC    +   +
Sbjct: 128 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAK 186

Query: 859 LLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           LL++    ++  ++    T L  A       +   +++
Sbjct: 187 LLVSQG-ASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 6e-10
 Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 19/232 (8%)

Query: 631 LHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL 690
            + A       + + +L   +  T  ++   T L  A        +  ++ +     N  
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDK 66

Query: 691 VPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIK-KVEQLFALIEN 749
                     +    +D+ +       A ++ VN + G  P +    K + E    L+E 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 750 NEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYT 809
                 K ++  +   +        +                       + NI +++G T
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYY--------------KASTNIQDTEGNT 171

Query: 810 ALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
            LH+A      +  +LL++  A I I  + ++ TPL +A +     I++ ++
Sbjct: 172 PLHLACDEERVEEAKLLVSQGASIYIENK-EEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-08
 Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 33/116 (28%)

Query: 845 LHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN------------------ 886
           +     +  L  ++  + A +      D    TALH+A                      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 887 ---------------HTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
                             +   LL  GA+    N  G T LH A       +  +L
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  101 bits (252), Expect = 3e-24
 Identities = 51/274 (18%), Positives = 82/274 (29%), Gaps = 23/274 (8%)

Query: 623 VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHK 682
           V     +   AA   G T  +  LL+ GA+    N   +T L  A       ++   V  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 683 PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ 742
              +        +   P     +         +         V            ++  +
Sbjct: 96  GANINQP---DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
                E N   +         E  +  +A   L                           
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN------------------DVR 194

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
               G TALH+A + G+ ++++LLI  R D+NI       TPLH A         R+L+ 
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVE 253

Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
              C++ A +  G TA   A  +    L  L  K
Sbjct: 254 NL-CDMEAVNKVGQTAFDVADEDILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 81.3 bits (199), Expect = 2e-17
 Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 32/282 (11%)

Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSII 643
              +       A ++G    V  L+          +IN  N  G + LH A       ++
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLE------RGADINYANVDGLTALHQACIDDNVDMV 89

Query: 644 QLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPP 703
           + L+++GAN    +     P                         YL   E +    +  
Sbjct: 90  KFLVENGANINQPDNEGWIP-----------------LHAAASCGYLDIAEYLISQGAHV 132

Query: 704 PTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSN 763
              +   D         +   + +    R   +I+   +    I   + +   +   +++
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192

Query: 764 EEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLV 823
                          AK   +V+    + +     ++NI + DG+T LH A   G  +  
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVL----KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 824 RLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           R+L+    D+  V +    T   +A ++    I+  L   ++
Sbjct: 249 RILVENLCDMEAVNK-VGQTAFDVADED----ILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 549 NSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           N Q +   +          ++    L     +       G TALH+A   G+   +K LI
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 609 YFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN 668
                     ++N  +  G +PLHAAA WG     ++L+++  +    NK   T    A+
Sbjct: 220 QARY------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

Query: 669 NLHVAKLL 676
              +   L
Sbjct: 274 E-DILGYL 280

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.0 bits (180), Expect = 7e-15
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSG 578
              G T LHVAA  G  +V+ L+++   D N +D  G +PLH AA  G +    +L+ + 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 579 ASINLTDNEGNTALHLATNNGHE 601
             +   +  G TA  +A  +   
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 10/161 (6%)

Query: 497 CDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGC 556
                          +                            +     +       G 
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG 200

Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
           + LH AA +G+  VL LL+ +   +N+ D +G T LH A + G E   + L+        
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN------ 254

Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLEN 657
             ++ AVN  G +    A       I+  L +      L +
Sbjct: 255 LCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 59/233 (25%)

Query: 501 EEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLH 560
           E  +     + K T    DD    V   A   G  + V  +LE GAD N  ++ G + LH
Sbjct: 21  ETDLEPPVVKRKKTKVKFDDG--AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALH 78

Query: 561 YAATRGHQNVLLL---------------------------------LLHSGASINLTDNE 587
            A    + +++                                   L+  GA +   ++E
Sbjct: 79  QACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE 138

Query: 588 GNTALHLATNNGHETCVKALIYFNEQEVLNLN---------------------INAVNNQ 626
           G+T L +A     E  ++  +     ++                                
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

Query: 627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           G + LH AA  GYT +++LL+    +  +++    TPL  A         ++L
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
                AC + +   V  LL     ++N  +  G TALH A I+++ ++   L+++GA   
Sbjct: 42  AVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 903 IKNHYGQTCLHMAQQMTSLSLVRVLTH 929
             ++ G   LH A     L +   L  
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLIS 127

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ 865
           D       A S G  + V  L+   ADIN       LT LH AC ++N+ +V+  L    
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVK-FLVENG 96

Query: 866 CNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQ 917
            N+N  D  G   LH AA   + ++A  L+  GA     N  G T L +A++
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 12/44 (27%), Positives = 15/44 (34%)

Query: 872 DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
            +        A  +  T     LL+ GA     N  G T LH A
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 21/67 (31%), Positives = 30/67 (44%)

Query: 861 LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTS 920
           L +   N       G TALH AA   +T +  LL+++     IK++ G T LH A     
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 921 LSLVRVL 927
               R+L
Sbjct: 245 EEACRIL 251

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  103 bits (256), Expect = 3e-24
 Identities = 43/300 (14%), Positives = 81/300 (27%), Gaps = 35/300 (11%)

Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVL---LLLLHSGASINLTDNEGNTA 591
                   +L +D + + +        AA  G  + L    LLL S   + +   E   A
Sbjct: 70  AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 129

Query: 592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGA 651
             LA  NGH   +  L     +      +  +  +       AA  G+  ++  L +   
Sbjct: 130 FRLAAENGHLHVLNRLC----ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 652 NPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLD 711
                  +           + A    A       + N+L+                  L 
Sbjct: 186 TEATAMIQ--------AENYYAFRWAAVGRGHHNVINFLL-------------DCPVMLA 224

Query: 712 YSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNA 771
           Y++++E       V   +        +  +       +    L+       +E       
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT-----KSECLQGFYM 279

Query: 772 CHPLCQCAKC-KEDVVES-ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY 829
              L +       D +    S P             D    L +A  LG+     LL++ 
Sbjct: 280 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.6 bits (208), Expect = 4e-18
 Identities = 34/190 (17%), Positives = 52/190 (27%), Gaps = 8/190 (4%)

Query: 504 INLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLEL---GADTNSQDLCGCSPLH 560
            N    Q          +   +  VAA+ G    +D +  L                   
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 561 YAATRGHQNVLLLLLHSGASINLTD--NEGNTALHLATNNGHETCVKALIYFNEQEVLNL 618
            AA  GH +VL  L     +  +     E   A  LA  NGH   +  L    E      
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC---ELAPTEA 188

Query: 619 NINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA 678
                     +   AA   G+ ++I  LLD           +    +   N  +A+ +N 
Sbjct: 189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 248

Query: 679 YVHKPKPLYN 688
                     
Sbjct: 249 LKEMHDAFKL 258

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.6 bits (203), Expect = 2e-17
 Identities = 43/358 (12%), Positives = 76/358 (21%), Gaps = 53/358 (14%)

Query: 557 SPLHYAATRGHQNVLLLLLHS-GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV 615
             L        +N+    + +   S+     +    + L      E   + L  +     
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN 73

Query: 616 LNL-----NINAVNNQGDSPLHAAARWGYTSI---IQLLLDHGANPTLENKRKVTPLQNA 667
            N      + +    + +     AA  G +S    + LLL       +         + A
Sbjct: 74  RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

Query: 668 ---NNLHVAKLL---NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANIS 721
               +LHV   L                       +            L      EA   
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL--NRLCELAPTEATAM 191

Query: 722 NVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKC 781
                                +  L++                              A  
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCP-------------------------VMLAYA 226

Query: 782 KEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQ 841
           +    E   + V            + + A  ++   G +DLV      +           
Sbjct: 227 EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF-------YM 279

Query: 842 LTPLHIACQNNNLSIVRLLLAA----KQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
           L  L        L  +R LL+                 N  L  A    +     LLL
Sbjct: 280 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 75.7 bits (185), Expect = 4e-15
 Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 14/144 (9%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR----------VKQLTPLHI 847
           L++   +      + +  +     + +LL  Y A  N   +          +K      +
Sbjct: 37  LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 96

Query: 848 ACQNNNLSIVRLL--LAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKN 905
           A      S +  L  L      V         A   AA N H ++   L +      +  
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 156

Query: 906 --HYGQTCLHMAQQMTSLSLVRVL 927
                     +A +   L ++  L
Sbjct: 157 IQAENYHAFRLAAENGHLHVLNRL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.6 bits (177), Expect = 4e-14
 Identities = 20/239 (8%), Positives = 51/239 (21%), Gaps = 22/239 (9%)

Query: 433 VEMSDLTTQLKVYNKYNNYKKISSLTKLFEFARLGDGDKVRAILQ-----EENKKEDSES 487
               D    L   ++     +  +       A  G    +  + +          +    
Sbjct: 103 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 162

Query: 488 LPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGAD 547
                   +          + + ++ T     +  +     A   G   V++ +L+    
Sbjct: 163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 222

Query: 548 TNSQDLCGCSPLHYAATR---------GHQNVLLLLLHSGASINLTDNEGN-------TA 591
               ++                        +    L +     +L               
Sbjct: 223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 282

Query: 592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
           L    +      ++ L+     +        +    +  L  A R G      LLL   
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKA-LAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.2 bits (168), Expect = 4e-13
 Identities = 26/214 (12%), Positives = 61/214 (28%), Gaps = 5/214 (2%)

Query: 706 QDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLI-KSYFGLSNE 764
           ++ +  +   NE ++  ++ +E +    +   K +EQ+  L+          +    S+ 
Sbjct: 25  ENLFQHFISANELSLMTLSYKEAI-HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDA 83

Query: 765 EKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVR 824
            K    +       A             +      + +  ++ Y A  +A   GH  ++ 
Sbjct: 84  HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLN 143

Query: 825 LLINYRADINIVTRVKQ-LTPLHIACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHY 881
            L        +     +      +A +N +L ++  L      +     Q          
Sbjct: 144 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 203

Query: 882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           A    H N+   LL           +        
Sbjct: 204 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 62.6 bits (151), Expect = 7e-11
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 15/141 (10%)

Query: 801 NICNSDGYTALHIATSLGHYDLVRLLIN-YRADINIVTRVKQLTPLHIACQNNNLSIVRL 859
           NI N +    L +   +   +L +  I+     +  ++  K+   + +    N   + +L
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSY-KEAIHIFLPGTKNMEQVRQL 64

Query: 860 LLAA----------KQCNVNAQDYRGNTALHYAAINNHTN---LATLLLKSGARPQIKNH 906
           L                + + +  +       AAI   ++      LLL S    ++   
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 124

Query: 907 YGQTCLHMAQQMTSLSLVRVL 927
                  +A +   L ++  L
Sbjct: 125 ENYQAFRLAAENGHLHVLNRL 145

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 522 GFTVLHVAALYGRIKVVDLVLELGAD-----TNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
               L        +  +  +L +        T +        L  A   G+Q    LLL 
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

Query: 577 SGASINLT 584
             + + LT
Sbjct: 339 IPSVLALT 346

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 98.7 bits (244), Expect = 3e-23
 Identities = 50/341 (14%), Positives = 96/341 (28%), Gaps = 68/341 (19%)

Query: 557 SPLH-YAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV 615
           SP+  +    G   +   +     +I        T LH   +N      + LI    +E 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKE- 59

Query: 616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKL 675
                                          +  GA+    +  + TPL  A      +L
Sbjct: 60  ------------------------------CIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 676 LNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT 735
           +   +        Y                                  N  E        
Sbjct: 90  VAYLMKAGADPTIY----------------------------------NKSERSALHQAA 115

Query: 736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTD 795
             +    +  ++ + ++K        +    +   A +         + +VE  ++   D
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 175

Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLS 855
                +     G TALH A  + +  +V+ L+  +            TP+ +A Q   + 
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 856 IVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK 896
           +V  L+     +V A D   +TA   A  NNH N+  +  +
Sbjct: 236 VVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIK-VVDLVLELGADTN 549
              + S     E              S   +G T LH AA    +  V  LV E G++ +
Sbjct: 156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 215

Query: 550 SQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
            QD  G +P+  AA  G   V++ L+  GAS+   D   +TA  LA  N H   V    
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 43/304 (14%), Positives = 93/304 (30%), Gaps = 35/304 (11%)

Query: 628 DSPLH-AAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLLNAYVHKP 683
           +SP+       G  +I + +     N  ++ +   T L      ++   ++ L  +  K 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK- 58

Query: 684 KPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQL 743
                                             A+++ ++  E          ++   +
Sbjct: 59  ----------------------------ECIAAGADVNAMDCDENTPLMLAVLARRRRLV 90

Query: 744 FALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINIC 803
             L++      I +    S   +   N    +         +         +    + I 
Sbjct: 91  AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 150

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
             +       +  L      ++  +  A  +     K  T LH A Q +N+ IV+ L+  
Sbjct: 151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQVSNMPIVKYLVGE 209

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
           K  N + QD  G T +  AA      +   L++ GA  +  +    T   +AQ     ++
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

Query: 924 VRVL 927
           V + 
Sbjct: 270 VDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 39/313 (12%), Positives = 89/313 (28%), Gaps = 49/313 (15%)

Query: 526 LHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH--------S 577
           LH  A  G   + + +     +         + LH+ A+         L+         +
Sbjct: 6   LHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARW 637
           GA +N  D + NT L LA        V  L+               N    S LH AA  
Sbjct: 64  GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD------PTIYNKSERSALHQAAAN 117

Query: 638 GYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVS 697
               ++  +L+         +     +     +   +  +        +          +
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 698 RPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKS 757
                   + +   +     +N+  V                             K +  
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIV-----------------------------KYLVG 208

Query: 758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL 817
             G + +++  D     +    + + +VV      +  +  ++   ++  +TA  +A + 
Sbjct: 209 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY----LIQQGASVEAVDATDHTARQLAQAN 264

Query: 818 GHYDLVRLLINYR 830
            H+++V +    R
Sbjct: 265 NHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 30/245 (12%)

Query: 458 TKLFEFARLGDGDKVRAILQEE-----------NKKEDSESLPLCHPLCSCDDCEEAINL 506
           T L   A     +K   ++  E           N  +  E+ PL   + +      A  +
Sbjct: 35  TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 94

Query: 507 KHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRG 566
           K           +            +G +  +    +L  D    D  G + L   A   
Sbjct: 95  KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 154

Query: 567 HQ-----------NVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV 615
            +               +     A  +    +G TALH A    +   VK L+       
Sbjct: 155 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK---- 210

Query: 616 LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHV 672
              N +  +  G +P+  AA+ G   ++  L+  GA+    +    T  Q A   N+ ++
Sbjct: 211 -GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

Query: 673 AKLLN 677
             + +
Sbjct: 270 VDIFD 274

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.0 bits (245), Expect = 3e-23
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 53/199 (26%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADTN----------------------------- 549
           D+ G T LH       +++V  +++ G++                               
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 550 --------SQDLCGCSPLHYAATRGHQN-------------VLLLLLHSGASINLTDNEG 588
                    +D    + LH+                     +  ++      I    NE 
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
            +  +       ++ ++ L   + + ++   +NA ++ GD+ L+ AAR G  SI+  LLD
Sbjct: 224 ESKPNDKNGERKDSILENL---DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

Query: 649 HGANPTLENKRKVTPLQNA 667
           +GA+P + NK  + P+   
Sbjct: 281 YGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.7 bits (221), Expect = 4e-20
 Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 33/314 (10%)

Query: 535 IKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL 594
           +K++  +     + N Q +   + L        Q +   L +  ++ N      N     
Sbjct: 19  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 78

Query: 595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPT 654
            +    ++ ++ +        LNLNI  V+  G++PLH         +++ L+ HG+N  
Sbjct: 79  VSF---DSLLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL 134

Query: 655 LENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSD 714
             +    + L  A           +      LY  L                        
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL------------------------ 170

Query: 715 VNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHP 774
                + +   R  +    IT         A    + +            +   +     
Sbjct: 171 ----ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 775 LCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
                  ++D +             +N  +S+G T L+IA  LG+  +V  L++Y AD  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 835 IVTRVKQLTPLHIA 848
           I  +   L P+   
Sbjct: 287 IANK-SGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (205), Expect = 5e-18
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 16/165 (9%)

Query: 767 VPDNACHPLCQCAKCKEDVVESESRPVTDECL--NINICNSDGYTALHIATSLGHYDL-- 822
             DN        A    +  +S +     + L   + + +S   T LH            
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 194

Query: 823 ----------VRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL--AAKQCNVNA 870
                     +  ++  +         ++ +  +        SI+  L         +NA
Sbjct: 195 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 254

Query: 871 QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           QD  G+T L+ AA   + ++   LL  GA P I N  G   +   
Sbjct: 255 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 458 TKLFEFARLGDGDKVRAILQE--ENKKEDSESLPLCHPLCSCDDCEEAINLKHSQS--KP 513
           T L     + + + V+ +++        D+             +  ++   +       P
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 514 TTQSMDDRGFTVLHVAALYGRIKVVD-------------LVLELGADTNSQDLCGCSPLH 560
                D    T+LH   +   +                 +V +      S      S  +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 561 YAATRGHQNVLLLLLHS---GASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN 617
                   ++L  L         +N  D+ G+T L++A   G+ + V AL+ +       
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG------ 282

Query: 618 LNINAVNNQGDSPLHAAA 635
            +    N  G  P+   A
Sbjct: 283 ADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 37/316 (11%), Positives = 82/316 (25%), Gaps = 42/316 (13%)

Query: 574 LLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHA 633
           ++ +  S  + DNE    L           ++ +      +  N N    ++      H 
Sbjct: 21  IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSS-NQQQQHV 79

Query: 634 AARWGYTSIIQLLLDHGANPTLE-NKRKVTPLQNA---NNLHVAKLLNAYVHKPKPLYNY 689
           +       +     +   N  +  ++   TPL       NL + K L  +          
Sbjct: 80  SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH---------- 129

Query: 690 LVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIEN 749
                                  S+    +    +                 +       
Sbjct: 130 ----------------------GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 750 NEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYT 809
             + L  S         +  +        AK   D++      V  +   I    ++  +
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG--WIVKKQNRPIQSGTNEKES 225

Query: 810 ALHIATSLGHYDLVR-LLINYRADINIVTRVKQ-LTPLHIACQNNNLSIVRLLLAAKQCN 867
             +         ++  L + +     +  +     T L+IA +  N+SIV  LL     +
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-AD 284

Query: 868 VNAQDYRGNTALHYAA 883
               +  G   + + A
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (157), Expect = 8e-12
 Identities = 30/241 (12%), Positives = 76/241 (31%), Gaps = 52/241 (21%)

Query: 739 KVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECL 798
           K+E     +   EI+ + +     +  +  +       Q     + +++  +    +  L
Sbjct: 38  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 97

Query: 799 NINI-CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTR------------------- 838
           N+NI  +  G T LH  TS+ + +LV+ L+ + ++                         
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 157

Query: 839 -----------------VKQLTPLHIACQNNNL------------SIVRLLLAAKQCNVN 869
                                T LH     + +             ++  ++  +   + 
Sbjct: 158 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 870 AQDYRGNTALHYAAINNHTNLATLLLKS---GARPQIKNHYGQTCLHMAQQMTSLSLVRV 926
           +      +  +        ++   L            ++  G TCL++A ++ ++S+V  
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 927 L 927
           L
Sbjct: 278 L 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
           +N N         L         ++   L N  ++ N                ++ L  V
Sbjct: 30  VNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN-SEGGSSNQQQQHVSFDSLLQEV 88

Query: 858 RLLLAAKQCNVNAQ-DYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQ 916
                  Q N+N   D  GNT LH+     +  L   L+K G+     ++ G++CL  A 
Sbjct: 89  NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 148

Query: 917 QM 918
           + 
Sbjct: 149 KS 150

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.8 bits (229), Expect = 2e-21
 Identities = 58/283 (20%), Positives = 96/283 (33%), Gaps = 38/283 (13%)

Query: 620 INAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKR---KVTPLQNANNLHVAKLL 676
              V   GD+ LH A    +   +  LL   A     + +     T       LH+A +L
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA------LHLAAIL 55

Query: 677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITE 736
                  K                       +   ++ ++ A                  
Sbjct: 56  GEASTVEKLYAAG------------AGVLVAERGGHTALHLACRVR-------------- 89

Query: 737 IKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDE 796
                 +      +  +     +   +++  PD +  P    ++   +  E       D 
Sbjct: 90  AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE--DW 147

Query: 797 CLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSI 856
            L +   N DG+T LH+A      ++VRLL +  AD+N        TPLH+A +    S+
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207

Query: 857 VRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
           + LLL A   +  A+ Y G T L  A +  +  LA LL   GA
Sbjct: 208 LELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.1 bits (209), Expect = 7e-19
 Identities = 43/286 (15%), Positives = 75/286 (26%), Gaps = 48/286 (16%)

Query: 555 GCSPLHYAATRGHQNVLLLLLHSGAS---INLTDNEGNTALHLATNNGHETCVKALIYFN 611
           G + LH A    H+  L  LL   A    ++L ++ G TALHLA   G  + V+ L    
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 612 EQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQ---NAN 668
                   +      G + LH A R    +   +LL    +   +              +
Sbjct: 69  AG------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREG 728
             H    +++  +                                 +   N         
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWR------------------LQLEAENYDGHTPLHV 164

Query: 729 VRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVES 788
                  E+              ++L++      N+ +                  V+E 
Sbjct: 165 AVIHKDAEM--------------VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 789 ESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN 834
               +     +       G T L  A    +  L RLL  + A   
Sbjct: 211 ----LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 6e-14
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 519 DDRGFTVLHVAALYGRIKVVDLVLELGADT---NSQDLCGCSPLHYAATRGHQNVLLLLL 575
            + G T LH+A ++     +D +L   A     + Q+  G + LH AA  G  + +  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALI----YFNEQEVLNLNINAVNNQGDSPL 631
            +GA + + +  G+TALHLA      TC   L+                 + +   D+  
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 632 HAAARW----GYTSIIQLLLDHGAN 652
             AA                D    
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQ 150

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 5e-13
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 843 TPLHIACQNNNLSIVRLLLA--AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR 900
           T LH+A  + +   +  LL   A    ++ Q+  G TALH AAI    +    L  +GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 901 PQIKNHYGQTCLHMAQQMTSLSLVRVL 927
             +    G T LH+A ++ + +   VL
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 7e-12
 Identities = 46/216 (21%), Positives = 69/216 (31%), Gaps = 45/216 (20%)

Query: 506 LKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATR 565
           L  S         +D G T LH+AA+ G    V+ +   GA     +  G + LH A   
Sbjct: 29  LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88

Query: 566 GHQNVLLLLLHSGASINLTDNE----------GNTALHLATNNGHETCVKALIYFNEQEV 615
                  +LL    S     ++           +T+   A  +            +E   
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR 148

Query: 616 LNLNINAVN--------------------------------NQGDSPLHAAARWGYTSII 643
           L L     +                                  G +PLH A      S++
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208

Query: 644 QLLLDHGANPTLENKRKVTPLQNA---NNLHVAKLL 676
           +LLL  GA+PT       TPL +A    N  +A+LL
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 28/242 (11%), Positives = 52/242 (21%), Gaps = 51/242 (21%)

Query: 458 TKLFEFARLGDGDKVRAILQEE------NKKEDSESLPLCHPLCSCDDCEEAINLKHSQS 511
           T L           +  +L         + + D     L       +             
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 512 KPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTN--------------SQDLCGCS 557
               +          H+A          ++L+                    + D     
Sbjct: 71  VLVAERGGHTAL---HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 558 PLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT--------------------- 596
               +                  +   + +G+T LH+A                      
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 597 -NNGHETCVKALIYFNEQEVLNL------NINAVNNQGDSPLHAAARWGYTSIIQLLLDH 649
                 T +   +      VL L      +  A    G +PL +A       + +LL  H
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 650 GA 651
           GA
Sbjct: 248 GA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 5e-09
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAA 863
           ++    A   +      +      ++R  +         TPLH+A  + +  +VRLL  A
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSL 923
                  +   G T LH A      ++  LLLK+GA P  + + G+T L  A    +  L
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 924 VRVL-THEAP 932
            R+L  H AP
Sbjct: 241 ARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 875 GNTALHYAAINNHTNLATLLLKSGARPQ---IKNHYGQTCLHMA 915
           G+TALH A I+ H      LL   A  +   ++N  GQT LH+A
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 5e-17
 Identities = 42/236 (17%), Positives = 71/236 (30%), Gaps = 15/236 (6%)

Query: 627 GDSPLHAAARWGYTSIIQLLLD----HGANPTLENKRKVTPLQNANNLHVAKLLNAYVHK 682
           GD+PLH A   G    +  L++     G    + N  + TPL  A        +      
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-------ITTLPSV 55

Query: 683 PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ 742
            + L         + R                   A + +             +      
Sbjct: 56  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 115

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
           +    E  E   +    G   +     +   PL    +     +    + +     N+N 
Sbjct: 116 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV---QLLLQHGANVNA 172

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
               G +ALH A+  G   LVR L+   AD ++       TPL +A     + I+R
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC-HNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 4e-13
 Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 12/238 (5%)

Query: 587 EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
           +G+T LH+A   G+   V  L+   +Q      ++  NN   +PLH A      S+++LL
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLL 59

Query: 647 LDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQ 706
           +  GA+P   ++   T    A        L A +    P    L  +             
Sbjct: 60  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 119

Query: 707 DKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEK 766
            +  +   +     ++++        +I   +          +  +  +    G +   +
Sbjct: 120 TECQETVQLLLERGADID------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 173

Query: 767 VPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVR 824
           +   +        +    +V +    +     + ++ N    T L +A S    D++R
Sbjct: 174 MYSGSSALHSASGRGLLPLVRT----LVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 1/154 (0%)

Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
                 C       + +         L++   N DG TALH+A +    + V+LL+   A
Sbjct: 75  TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 134

Query: 832 DINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
           DI+ V      +PL  A +NN+LS+V+LLL         Q Y G++ALH A+      L 
Sbjct: 135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLV 193

Query: 892 TLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR 925
             L++SGA   +KN +  T L +A+    + ++R
Sbjct: 194 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 28/115 (24%), Positives = 51/115 (44%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
              +    +C+E + L   +           G + L  A     + +V L+L+ GA+ N+
Sbjct: 113 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 172

Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVK 605
           Q   G S LH A+ RG   ++  L+ SGA  +L +   +T L +A +      ++
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 555 GCSPLHYAATRGHQNVLLLLL----HSGASINLTDNEGNTALHLATNNGHETCVKALIYF 610
           G +PLH A  +G+   +  L+      G  +++ +N   T LHLA      + V+ L+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 611 NEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP 653
                      A++  G +  H A      + ++ LLD  A  
Sbjct: 63  GAS------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 99

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 7e-08
 Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 10/132 (7%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYR----ADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
           DG T LHIA   G+   V  L+N       +++I   ++Q TPLH+A        V  LL
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTL-PSVVRLL 59

Query: 862 AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY----GQTCLHMAQQ 917
                +  A D  G TA H A  +        LL S A   +        G T LH+A  
Sbjct: 60  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 119

Query: 918 MTSLSLVRVLTH 929
                 V++L  
Sbjct: 120 TECQETVQLLLE 131

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 24/232 (10%)

Query: 458 TKLFEFARLGDGDKVRAILQEE-------NKKEDSESLPLCHPLCSCDDCEEAINLKHSQ 510
           T L      G+   V  ++          +   +    PL   + +       +      
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS---VVRLLVT 61

Query: 511 SKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLC----GCSPLHYAATRG 566
           +  +  ++D  G T  H+A  +     +  +L+  A            G + LH A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 567 HQNVLLLLLHSGASINLTDN-EGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN 625
            Q  + LLL  GA I+  D   G + L  A  N   + V+ L+           +NA   
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQMY 175

Query: 626 QGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNA---NNLHVAK 674
            G S LH+A+  G   +++ L+  GA+ +L+N    TPL  A     + + +
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 520 DRGFTVLHVAALYGRIKVVDLVLEL----GADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
           + G T LH+A + G +  V  ++ L    G + +  +    +PLH A      +V+ LL+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
            +GAS    D  G TA HLA  +   TC++AL+         L++ A N  G + LH A 
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG--TLDLEARNYDGLTALHVAV 118

Query: 636 RWGYTSIIQLLLDHGANP 653
                  +QLLL+ GA+ 
Sbjct: 119 NTECQETVQLLLERGADI 136

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 4e-13
 Identities = 42/274 (15%), Positives = 69/274 (25%), Gaps = 52/274 (18%)

Query: 589 NTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD 648
           N  LH A        V+ L+           +   +  G  PLH +  +    I   LL 
Sbjct: 1   NYPLHQACMENEFFKVQELL-----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 649 HGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDK 708
                                           +     Y             S    +  
Sbjct: 56  KM-----------------------------ENVNLDDYPDDSGWTPFHIACSVGNLEVV 86

Query: 709 YLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVP 768
              Y    + +++ +  +           K  E    LIEN     IK  F      +  
Sbjct: 87  KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 146

Query: 769 DNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLI- 827
                 L +                      +N  +  G+T L  A + GH D   LL+ 
Sbjct: 147 SVGSLKLIELLCGL-------------GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 193

Query: 828 NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
            Y A+ ++V   K      +A       + +  L
Sbjct: 194 KYGAEYDLVDN-KGAKAEDVALNEQ---VKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 6e-13
 Identities = 16/76 (21%), Positives = 28/76 (36%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQ 902
            PLH AC  N    V+ LL +K   +  +D  G   LH++       + + LL       
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 903 IKNHYGQTCLHMAQQM 918
           + ++   +        
Sbjct: 62  LDDYPDDSGWTPFHIA 77

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 34/273 (12%), Positives = 63/273 (23%), Gaps = 47/273 (17%)

Query: 628 DSPLHAAARWGYTSIIQLLLD-HGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPL 686
           + PLH A        +Q LL    +    +++    PL      H +    A+      L
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL------HWSVSFQAHEITSFLL 54

Query: 687 YNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFAL 746
                         S            ++           +    +              
Sbjct: 55  SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT------------ 102

Query: 747 IENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSD 806
                                       +              S+ + +   ++ I +  
Sbjct: 103 -------------------------NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF 137

Query: 807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQC 866
               LH A S+G   L+ LL             +  TPL  A    +     LL+     
Sbjct: 138 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 197

Query: 867 NVNAQDYRGNTALHYAAINNHTNLATLLLKSGA 899
             +  D +G  A   A    +  +    L +  
Sbjct: 198 EYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
            H  CS  + E   +L     KP    + ++G T LH+A      +V   ++E GA    
Sbjct: 74  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 133

Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGAS-INLTDNEGNTALHLATNNGHETCVKALIY 609
           +D     PLH AA+ G   ++ LL   G S +N  D +G T L  A   GH      L+ 
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV- 192

Query: 610 FNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGAN 652
               E      + V+N+G      A       + +  L++  +
Sbjct: 193 ----EKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 8e-10
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 12/226 (5%)

Query: 458 TKLFEFARLGDGDKVRAILQEE----NKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKP 513
             L +     +  KV+ +L  +     +K+    +PL   +        +  L   ++  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 514 TTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGC--SPLHYAATRGHQNVL 571
                DD G+T  H+A   G ++VV  + +     +   +     + LH A  +    V 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 572 LLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPL 631
             L+ +GAS+ + D      LH A + G    ++ L    +       +N  + QG +PL
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 176

Query: 632 HAAARWGYTSIIQLLLD-HGANPTLENKRKVTPLQNANNLHVAKLL 676
             A   G+     LL++ +GA   L + +       A N  V K  
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
                  A    ++   +S        ++N   + G T LH+A     +++ + LI   A
Sbjct: 70  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 129

Query: 832 DINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
            + I  +  Q  PLH A    +L ++ LL    +  VN QD +G T L +A    H + A
Sbjct: 130 SVRIKDKFNQ-IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 188

Query: 892 TLLL-KSGARPQIKNHYGQTCLHMAQQ 917
            LL+ K GA   + ++ G     +A  
Sbjct: 189 VLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 876 NTALHYAAINNHTNLATLLLKS-GARPQIKNHYGQTCLHMA 915
           N  LH A + N       LL S  +    K+  G+  LH +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
            +   + DG   LH + S   +++   L++   ++N+                +  ++  
Sbjct: 26  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 85

Query: 859 LLL---AAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMA 915
           +        + ++N    +G T LH A       ++  L+++GA  +IK+ + Q  LH A
Sbjct: 86  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 145

Query: 916 QQM 918
             +
Sbjct: 146 ASV 148

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 3e-12
 Identities = 24/210 (11%), Positives = 49/210 (23%), Gaps = 12/210 (5%)

Query: 627 GDSPLHAAARWGYTS----IIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHK 682
           GDS LH A      +    +I+ +    A    +N  + TPL  A   +        + +
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-----QPEIAE 56

Query: 683 PKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQ 742
                                   ++    S               +             
Sbjct: 57  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 116

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
           L ++     I  +    G     + P N    L      +          +     ++N 
Sbjct: 117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNR 173

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRAD 832
               GY+   +        + + L     +
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 7e-11
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
            H  C+        V ++S         +   N +G+T LH+A+  G+  +V LL++  A
Sbjct: 76  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 135

Query: 832 DINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLA 891
           D+N        T LH+A    N  +V LLL     +VN   Y+G +          T + 
Sbjct: 136 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQ 194

Query: 892 TLLLKSGA 899
             L +   
Sbjct: 195 QQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 5e-09
 Identities = 23/99 (23%), Positives = 29/99 (29%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
           C  L S       + L  S            G T LH+A       +V L+L+ GAD N 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGN 589
               G SP      R    +   L            E  
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 4e-08
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
           C   C         +          ++ +  G T LH+A+++G + +V+L++ LGAD N+
Sbjct: 80  CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 139

Query: 551 QDLC-GCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           Q+ C G + LH A    + +++ LLL  GA +N    +G +   L          + L 
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 51/204 (25%)

Query: 522 GFTVLHVAALYGRIKVVDLVLEL----GADTNSQDLCGCSPLHYAATRGHQNV------- 570
           G + LH+A ++    +   V+       A  N Q+    +PLH A       +       
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 571 --------------------------------LLLLLHSGASINLTDNEGNTALHLATNN 598
                                                H  + +  T+  G+T LHLA+ +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENK 658
           G+   V+ L+            N     G + LH A       ++ LLL  GA+      
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 659 RKVTPLQNA---NNLHVAKLLNAY 679
           +  +P Q      +  + + L   
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 6e-08
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 556 CSPLHYAATRGHQNVLLLLLHSGASI-NLTDNEGNTALHLATNNGHETCVKALIYFNEQE 614
            + LH A+  G+  ++ LL+  GA +       G TALHLA +  +   V  L+      
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA-- 169

Query: 615 VLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRK 660
               ++N V  QG SP         T I Q L              
Sbjct: 170 ----DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 875 GNTALHYAAINNHTNLATLLLK----SGARPQIKNHYGQTCLHMAQQM 918
           G++ LH A I+    L   +++      A    +N+  QT LH+A   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 844 PLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQI 903
            LH+A  +  L IV LL++        +   G TALH A    + +L +LLLK GA    
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 904 KNHYGQTCLHMAQQMTSLSLVRVL 927
             + G +   +     S  + + L
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 843 TPLHIACQNNNLSIVRLL---LAAKQCNVNAQDYRGNTALHYAAINNH 887
           + LH+A  +   ++   +   +      +N Q+    T LH A I N 
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 806 DGYTALHIATSLGHYD----LVRLLINYRADINIVTRVKQLTPLHIACQNNN 853
           DG + LH+A           ++R +    A +N    ++Q TPLH+A   N 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQ 51

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.3 bits (152), Expect = 9e-12
 Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 43/198 (21%)

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLL--- 573
           +MD  G T LH+AA + R      +L+ GAD NSQD  G +PLH A       V  +   
Sbjct: 18  TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLR 77

Query: 574 -------------------------------LLHSGASINLTDNEGNTALHLATNNGHET 602
                                          L+ + A IN  DN G TALH A    +  
Sbjct: 78  NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE 137

Query: 603 CVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVT 662
            V  L+  +       N +A +++ ++PL  AAR G     + LLD+ AN  + +     
Sbjct: 138 AVNILLMHHA------NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRL 191

Query: 663 PLQNA---NNLHVAKLLN 677
           P   A    +  + +LL+
Sbjct: 192 PRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.3 bits (152), Expect = 9e-12
 Identities = 27/117 (23%), Positives = 48/117 (41%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
              + +     E +      +     + D+ G T LH AA     + V+++L   A+ ++
Sbjct: 92  TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA 151

Query: 551 QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKAL 607
           QD    +PL  AA  G       LL + A+  +TD+       +A+   H   V+ L
Sbjct: 152 QDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 7/190 (3%)

Query: 458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCD-DCEEAINLKHSQSKPTTQ 516
           T L   AR    D  + +L         ++        +   D      +          
Sbjct: 25  TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN 84

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH 576
           +    G T L +AA      +V+ ++   AD N+ D  G + LH+AA   +   + +LL 
Sbjct: 85  ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 144

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
             A+ +  D++  T L LA   G     KAL+          N    ++    P   A+ 
Sbjct: 145 HHANRDAQDDKDETPLFLAAREGSYEASKALLDNF------ANREITDHMDRLPRDVASE 198

Query: 637 WGYTSIIQLL 646
             +  I++LL
Sbjct: 199 RLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 3/185 (1%)

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
           L            K     +  +    +        A    D +      + +   N+N 
Sbjct: 27  LHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA 85

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLA 862
              DG T L +A  L    +V  LI   ADIN        T LH A   NN   V +L  
Sbjct: 86  RMHDGTTPLILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNIL-L 143

Query: 863 AKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLS 922
               N +AQD +  T L  AA       +  LL + A  +I +H  +    +A +     
Sbjct: 144 MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD 203

Query: 923 LVRVL 927
           +VR+L
Sbjct: 204 IVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 49/243 (20%)

Query: 619 NINA-VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLN 677
            +NA ++  G++ LH AAR+      + LLD GA+   ++    TPL  A       +  
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ 73

Query: 678 AYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEI 737
             +       N  +         +     +  ++     +A+I+  +             
Sbjct: 74  ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD------------- 120

Query: 738 KKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDEC 797
                                          ++    L   A        +         
Sbjct: 121 -------------------------------NSGKTALHWAAAVNNTEAVNILLMHHANR 149

Query: 798 LNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIV 857
              +  +    T L +A   G Y+  + L++  A+  I        P  +A +  +  IV
Sbjct: 150 ---DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH-MDRLPRDVASERLHHDIV 205

Query: 858 RLL 860
           RLL
Sbjct: 206 RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 20/113 (17%), Positives = 37/113 (32%)

Query: 822 LVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHY 881
           ++  L+   A++N        T LH+A +       + LL A     +  +         
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV 934
            A +       LL         + H G T L +A ++    +V  L      +
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 116

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 570 VLLLLLHSGASINLT-DNEGNTALHLATNNGHETCVKALIYFN 611
           V+  LL  GA +N T D  G T+LHLA         K L+   
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG 46

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (145), Expect = 2e-11
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQS 517
            KL E AR G  D+VR ++        ++ L       +      +      ++  +  +
Sbjct: 4   KKLLEAARAGQDDEVRILM-ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 518 MDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHS 577
                 T LH+AA  G   +V+++L+ GAD N++D+   + LH+A    HQ V+ LL+  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 578 GASINLTDNEGNTALHLATNNGHETCVKAL 607
           GA ++       TA  ++ +NG+E   + L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 6e-08
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 38/155 (24%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDL------------------------------ 553
             L  AA  G+   V +++  GA   +  L                              
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 554 --CGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFN 611
                +PLH AA+ GH N++ +LL  GA +N  D    TALH AT + H+  V+ LI + 
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 612 EQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLL 646
                  +++  +    +    +   G   + ++L
Sbjct: 124 A------DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 806 DGYTALHIATSLGHYDLVRLLINYRADINI------------------------------ 835
           D    L  A   G  D VR+L+   A                                  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 836 VTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
             R K          +   + +  +L     +VNA+D    TALH+A  +NH  +  LL+
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
           K GA    ++ + +T   ++    +  L  +L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 799 NINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVR 858
           ++N  +    TALH AT   H ++V LLI Y AD++  ++    T   I+  N N  +  
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK-FCKTAFDISIDNGNEDLAE 150

Query: 859 LL 860
           +L
Sbjct: 151 IL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 758 YFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSL 817
             G     K                ++VVE   +   D    ++  +    TA  I+   
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDN 143

Query: 818 GHYDLVRLL 826
           G+ DL  +L
Sbjct: 144 GNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 773 HPLCQCAKCK--EDVVESESRPV-TDECLNINICNSDGYTALHI---ATSLGHYDLVRLL 826
           H LC+  K +    ++++ +  V   E + +   +    TALH+   +       +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 827 INYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINN 886
           +    +++   +  + +     C   + +    LL   + ++   +  G T L  A    
Sbjct: 68  VQNSGNLDK--QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 887 HTNLATLLLKSGARP 901
           H +   LL ++ +  
Sbjct: 126 HEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 6e-11
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 519 DDRGFTVLHVAAL---YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLL 575
            +   T LH+A        + +VD +++   + + Q   G + LHY     +   L LLL
Sbjct: 42  HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 101

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA 635
              ASI + +  G T L +A    HE C + L              A++ + +S +H   
Sbjct: 102 RGKASIEIANESGETPLDIAKRLKHEHCEELL------------TQALSGRFNSHVHVEY 149

Query: 636 RWG 638
            W 
Sbjct: 150 EWR 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 1e-10
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 15/138 (10%)

Query: 526 LHVAALYGRIKVVDLVLELGADTNSQ------DLCGCSPLHYAA---TRGHQNVLLLLLH 576
           L  A     I  +      G D   +           + LH A     R   +++  L+ 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 577 SGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAAR 636
           +  +++    +G+TALH      +  C+K L+           I   N  G++PL  A R
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS------IEIANESGETPLDIAKR 123

Query: 637 WGYTSIIQLLLDHGANPT 654
             +    +LL    +   
Sbjct: 124 LKHEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 805 SDGYTALHI---ATSLGHYDLVRLLINYRADINIVTRVKQ-----LTPLHIACQN---NN 853
           +D    LH    A        +        D+     +        T LH+A ++    +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLH 913
           L IV  L+     N++ Q  +G+TALHY  + ++     LLL+  A  +I N  G+T L 
Sbjct: 61  LHIVDFLVQNS-GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 119

Query: 914 MAQQMTSLSLVRVLTH 929
           +A+++       +LT 
Sbjct: 120 IAKRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 18/66 (27%)

Query: 767 VPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLL 826
           +             C         + +     +I I N  G T L IA  L H     LL
Sbjct: 74  LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 133

Query: 827 INYRAD 832
               + 
Sbjct: 134 TQALSG 139

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 2e-09
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 27/154 (17%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
             L  AA  G ++ +  +L+   + N+Q+  G + L        +    LLL        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLN------------------------ 619
                      A     +T    L +  +  + +                          
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 620 ---INAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
              +   N++GD+    A  +G   ++ L+  +G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 846 HIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSG 898
           H+A +  +L +V  L+     NV  ++++G+TA   A +     + +L+  +G
Sbjct: 104 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 20/60 (33%)

Query: 770 NACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY 829
           +    L      KE  +      V     N+   N  G TA  +A   G  ++V L+   
Sbjct: 96  DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 877 TALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQM 918
             L  AA        T LL++      +N +G+T L + +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG 44

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH 887
             L  A    +L  +  LL     NVNAQ+  G TAL    + N 
Sbjct: 3   NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNP 46

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 460 LFEFARLGDGDKVRAILQEE---NKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQ 516
           L   A  GD +++ ++LQ     N +           L         I  +         
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFG----RTALQVMKLGNPEIARRLLLRGANPD 60

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH-QNVLLLLL 575
             D  GF V+H AA  G +  +  +LE  AD N +D  G  PLH AA  GH + V  L+ 
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 576 HSGASINLTDNEGNTALHLATNNGHETCVKALI 608
           H+ +++   +++G+TA  LA   G    V  + 
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 31/150 (20%)

Query: 809 TALHIATSLGHYDLVRLLINYRADINIVTR------------------------------ 838
             L  A + G  + +  L+    ++N                                  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 839 -VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKS 897
                  +H A +   L  ++ LL  +       +         A   +   +  L+  +
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 898 GARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
            +    +NH G T   +A+      +V ++
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 629 SPLHAAARWGYTSIIQLLLDHGANPTLENKR 659
           + L +AA  G    +  LL +  N   +N  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGF 33

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-09
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 40/162 (24%)

Query: 521 RGFTVLHVAALYGRIKVV-DLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLH--- 576
           R    L  AA  G ++ V  L+       ++ +  G + L           L LL     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 577 -----------------------------SGASINLTDNEGNTALHLATNNGHETCVKAL 607
                                         GA +N+ D  G   +HLA   GH   V  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 608 IYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH 649
              +       +++  + +G +PL  A + G   ++ +L  H
Sbjct: 121 AAES-------DLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRA 831
                              + + +   ++N+ +  G   +H+A   GH  +V  L    +
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S 124

Query: 832 DINIVTRVKQLTPLHIACQNNNLSIVRLLL 861
           D++     + LTPL +A Q     +V +L 
Sbjct: 125 DLHRRDA-RGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 864 KQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
            + +++ +D RG T L  A      +L  +L 
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 796 ECLNINICNSDGYTALHIATSLGHYDLVRLLIN 828
              +++  ++ G T L +A   G  DLV +L  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 843 TPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH 887
             L  A    ++  VR LL  +  + +A +  G TAL      + 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 31/149 (20%)

Query: 558 PLHYAATRGHQNVLLLLLHS-GASINLTDNEGNTALHLATNNGHETCVKA---------- 606
            L  AA RG    +  LLH      +  +  G TAL +         ++           
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 607 ----------------LIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG 650
                           L           ++N  +  G  P+H A + G+T+++  L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123

Query: 651 ANPTLENKRKVTPLQNA---NNLHVAKLL 676
           ++    + R +TPL+ A       +  +L
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 27/152 (17%), Positives = 41/152 (26%), Gaps = 32/152 (21%)

Query: 807 GYTALHIATSLGHYDLVR-LLINYRADINIVTR--------------------------- 838
               L  A + G    VR LL       + + R                           
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 839 ---VKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
                  T                +L     +VN  D  G   +H A    HT + + L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL 927
              +    ++  G T L +A Q  +  LV +L
Sbjct: 122 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 491 CHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKVVDLVLELGADTNS 550
                +             +        D  G   +H+A   G   VV  +    +D + 
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128

Query: 551 QDLCGCSPLHYAATRGHQNVLLLLL 575
           +D  G +PL  A  RG Q+++ +L 
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 874 RGNTALHYAAINNHTN-LATLLLKSGARPQIKNHYGQTCLHMAQQM 918
           R    L  AA       +  LL +    P   N +G+T L +    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG 46

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL 583
            +L  ++L G   +V  ++    D +  +  G + LH A   GH  ++  L+  G ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 584 TDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNN---QGDSPLHAAARWGYT 640
            D++G T LH A +  +    K L+           + A+     Q  +        GYT
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGA------AVFAMTYSDMQTAADKCEEMEEGYT 116

Query: 641 SIIQLLLDHGAN 652
              Q L      
Sbjct: 117 QCSQFLYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 3/128 (2%)

Query: 457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQ 516
           L  L + +  G+ D V+ I+ E +         +     +       I     Q      
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 517 SMDDRGFTVLHVAALYGRIKVVDLVLELGADTNSQ---DLCGCSPLHYAATRGHQNVLLL 573
           + D  G+T LH AA    ++V   ++E GA   +    D+   +        G+      
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 574 LLHSGASI 581
           L      +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 743 LFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINI 802
           L       E  L++    +   +         +               + +    +N+N 
Sbjct: 5   LLDSSLEGEFDLVQRI--IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTP--LHIACQNNNLSIVRLL 860
            +SDG+T LH A S  +  + + L+   A +  +T     T        +       + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 861 LAAKQ 865
              ++
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 557 SPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVL 616
           + L  ++  G  +++  +++     +L ++         T   +  C             
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPND------EGITALHNAVCAGHTEIVKFLVQF 56

Query: 617 NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANP-TLENKRKVTPLQNA-----NNL 670
            +N+NA ++ G +PLH AA      + + L++ GA    +      T             
Sbjct: 57  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 116

Query: 671 HVAKLL 676
             ++ L
Sbjct: 117 QCSQFL 122

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 809 TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNV 868
             L  ++  G +DLV+ +I    D ++          +  C  +   +    L     NV
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF--LVQFGVNV 60

Query: 869 NAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHY-GQTCLHMA 915
           NA D  G T LH AA  N+  +   L++SGA      +   QT     
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 108

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-07
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 6/129 (4%)

Query: 520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGA 579
           +     L  AA  GR++ V  +LE GA+ N+ +  G  P+        +           
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV------AELL 54

Query: 580 SINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGY 639
            ++  +        L            L            ++  +  G  P+  A   G+
Sbjct: 55  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 114

Query: 640 TSIIQLLLD 648
             + + L  
Sbjct: 115 RDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 31/122 (25%)

Query: 807 GYTALHIATSLGHYDLVRLLINYRADINI------------------------------- 835
               L  A + G  + VR L+   A+ N                                
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 836 VTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL 895
                 LT               ++L      ++ +D  G   +  A    H ++A  L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 896 KS 897
            +
Sbjct: 123 AA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 8/57 (14%), Positives = 18/57 (31%)

Query: 772 CHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLIN 828
                       +        +      +++ ++ G   + +A  LGH D+ R L  
Sbjct: 67  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	936
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ot3a1	249	Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Hom	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-46  Score=423.12  Aligned_cols=354  Identities=29%  Similarity=0.400  Sum_probs=309.6

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      ||||.||..|+.++|++|++.|++.+                                 .+|..|.||||+|+..|+.++
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in---------------------------------~~d~~g~TpL~~A~~~g~~~i   48 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPN---------------------------------VSNVKVETPLHMAARAGHTEV   48 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSC---------------------------------CSSSCCCCHHHHHHHHTCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCC---------------------------------CCCCCCCCHHHHHHHcCCHHH
Confidence            79999999999999999999987543                                 367889999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCC---------------------------------CcC
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASI---------------------------------NLT  584 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---------------------------------~~~  584 (936)
                      +++|+++|++++.++..|.||||+|+..|+.+++++|+..+.+.                                 +..
T Consensus        49 v~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (408)
T d1n11a_          49 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM  128 (408)
T ss_dssp             HHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccccccccccccccccccc
Confidence            99999999999999999999999999999999999998765443                                 345


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChh
Q psy8454         585 DNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPL  664 (936)
Q Consensus       585 d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l  664 (936)
                      +..|.++++.|+..++.+++++|++++      .+++..+..|.+||++|++.|+.+++++|+++|++++..+..|.||+
T Consensus       129 ~~~~~~~l~~a~~~~~~~~v~~ll~~~------~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  202 (408)
T d1n11a_         129 TKKGFTPLHVAAKYGKVRVAELLLERD------AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL  202 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC------CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcc
Confidence            677889999999999999999999865      56788888999999999999999999999999999999999999999


Q ss_pred             hhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHH
Q psy8454         665 QNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLF  744 (936)
Q Consensus       665 ~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  744 (936)
                      +.+......+....+.......                                              ........++++
T Consensus       203 ~~~~~~~~~~~~~~l~~~~~~~----------------------------------------------~~~~~~~~t~l~  236 (408)
T d1n11a_         203 HIAAKQNQVEVARSLLQYGGSA----------------------------------------------NAESVQGVTPLH  236 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT----------------------------------------------TCCCTTCCCHHH
T ss_pred             hhhhccchhhhhhhhhhccccc----------------------------------------------cccCCCCCCHHH
Confidence            9998777666666554221111                                              111112345788


Q ss_pred             HHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q psy8454         745 ALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVR  824 (936)
Q Consensus       745 ~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~  824 (936)
                      .|+..+..++++++....                                   ...+..+..|.|||+.|++.++.++++
T Consensus       237 ~a~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~g~~~l~~a~~~~~~~i~~  281 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQ-----------------------------------ANGNLGNKSGLTPLHLVAQEGHVPVAD  281 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTT-----------------------------------CCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHhCcHhHhhhhhccc-----------------------------------cccccccCCCCChhhhhhhcCcHHHHH
Confidence            999999999999888643                                   335777889999999999999999999


Q ss_pred             HHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCc
Q psy8454         825 LLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIK  904 (936)
Q Consensus       825 ~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~  904 (936)
                      +|+++|++++..+ ..+.||||.|+..++.++++++++.| +++|.+|..|+||||+|+++|+.++|++|+++||+++++
T Consensus       282 ~Ll~~g~~~~~~~-~~~~t~L~~~~~~~~~~~~~~ll~~g-~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~  359 (408)
T d1n11a_         282 VLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV  359 (408)
T ss_dssp             HHHHHTCCTTCCC-SSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHCCCcccccc-ccccccchhhcccCcceeeeeecccc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            9999999999998 88999999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHH---hhhCCC
Q psy8454         905 NHYGQTCLHMAQQMTSLSLVRVL---THEAPF  933 (936)
Q Consensus       905 d~~g~T~L~~A~~~g~~~iv~~L---l~~~~~  933 (936)
                      |..|+||||+|+++||.++|++|   +++++.
T Consensus       360 d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~  391 (408)
T d1n11a_         360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSF  391 (408)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHHHhcccc
Confidence            99999999999999999999866   444444

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=374.84  Aligned_cols=330  Identities=28%  Similarity=0.395  Sum_probs=280.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHH
Q psy8454         523 FTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHET  602 (936)
Q Consensus       523 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~e  602 (936)
                      .||||+||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.++.+|.||||+|+..|+.+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccc---------------------------cccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454         603 CVKALIYFNEQEV---------------------------LNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL  655 (936)
Q Consensus       603 iv~~Ll~~~~~~~---------------------------~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  655 (936)
                      ++++|+.......                           .+...+..+..+.++++.|+..++.+++++|+++|++++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            9999997643211                           1123455567777788888888888888888888888877


Q ss_pred             cccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchh
Q psy8454         656 ENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNIT  735 (936)
Q Consensus       656 ~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (936)
                      .+..|.+||++|+..+..++++.++..+....                                              ..
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~----------------------------------------------~~  194 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH----------------------------------------------SP  194 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC----------------------------------------------CC
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCccc----------------------------------------------cc
Confidence            77777788877777777776666653221110                                              01


Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHH
Q psy8454         736 EIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIAT  815 (936)
Q Consensus       736 ~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa  815 (936)
                      ...+.++++.++.....+....++...                                   ......+..|.|||+.|+
T Consensus       195 ~~~~~t~l~~~~~~~~~~~~~~l~~~~-----------------------------------~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         195 AWNGYTPLHIAAKQNQVEVARSLLQYG-----------------------------------GSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT-----------------------------------CCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCcchhhhccchhhhhhhhhhcc-----------------------------------ccccccCCCCCCHHHHHH
Confidence            112234667777777777777666433                                   334556778999999999


Q ss_pred             HcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy8454         816 SLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLL  895 (936)
Q Consensus       816 ~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL  895 (936)
                      ..++.++++++++.+..++..+ ..|.|||+.|+..++.+++++|++.| ++++..+..+.||||.|+..++.+++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             HhCcHhHhhhhhcccccccccc-CCCCChhhhhhhcCcHHHHHHHHHCC-CccccccccccccchhhcccCcceeeeeec
Confidence            9999999999999999999888 89999999999999999999999999 999999999999999999999999999999


Q ss_pred             HcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCcC
Q psy8454         896 KSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       896 ~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      +.|++++.+|..|+||||+|+++|+.++|++|+++|+.+.
T Consensus       318 ~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999998763

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=308.49  Aligned_cols=225  Identities=20%  Similarity=0.284  Sum_probs=195.8

Q ss_pred             HHHHHHhhccccCchHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhchhhHHhhhhcHHHHHHHHHH
Q psy8454         167 RDCIDLLWTESKGKEIFEKMDEAIKMFLLTNDQFEYNPFDKQKYLVEKLYQNCLNICLKDNKLRQSISINKYLIDSIKLA  246 (936)
Q Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~i~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  246 (936)
                      +|+.+||+.  .+ ....++.+.+++|+..+.......+++..+.++++|+.+.+.+.....+      .+...+.+.++
T Consensus         2 ~df~~fl~~--~~-~~~~~~~k~~~~Fi~~~~~~~~~~~~e~~~~i~~f~~~~~~~l~~~~~~------~~~~~~~~~~~   72 (249)
T d2ot3a1           2 KEFIEFLKT--FH-KTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTRGKV------PPERVEKIMDQ   72 (249)
T ss_dssp             HHHHHHHHT--TH-HHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHSTTCC------CHHHHHHHHHH
T ss_pred             hHHHHHHHH--Hh-hhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhcCC------CHHHHHHHHHH
Confidence            588899987  43 3468899999999999977667889999999999999999887543321      22337889999


Q ss_pred             HHHHHHHhhHHHHhcccCccChHHHHHHHHHHHhccCCCCccccccccc-----ccchHHHHHHHhcccccCCcchhHHH
Q psy8454         247 VETYMHHGIYKTLIKGITACTALEDAQFNKMIRNLSDIQLKDLDIREDL-----YDTVPRARSEISHIDCYSTILGKIGC  321 (936)
Q Consensus       247 ~E~yv~~~ly~~~~~~~~~~~~~~d~~l~~~~~~l~~~~~~~l~i~~~~-----~~~~~~a~~~l~~i~~~~~p~~Kl~~  321 (936)
                      ||+|||++||+.+|++..+.+..+|..++++|+.|+|+++++||++...     ..+|..|+++|++|+.++||+||+.|
T Consensus        73 vEk~i~~~ly~~~f~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~~~~~~~~~~~~~A~~~L~~i~~~~sP~dKl~~  152 (249)
T d2ot3a1          73 IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLAC  152 (249)
T ss_dssp             HHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHTTTCCTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHhccCCHHhcCCccccccchhhhHHHHHHHHHHHhhcccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999997543     36799999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccccCCCCCccchhhHHHhHhhhcCCcchHHHHHHHHHhccCCCCCcccCcchhhHHHHHHHHHHH
Q psy8454         322 VRRCISAISKEDTRDKLQGNIITVDDLLPMIVFLVVKCALPNWIAHLTYMKQFHFSQSSNVCIDQDSFLITSLEASIEHI  401 (936)
Q Consensus       322 l~~~~~~i~~~~~~~~~~~~~~~aD~llp~li~vvi~a~~~~l~s~l~yi~~f~~~~~~~~~~~~~~y~lt~~~aa~~~i  401 (936)
                      |.+||+.|++....  ....++|||||||+|||||+||+||+|.||+.||++|+.++..  ..||.+||||||++|++||
T Consensus       153 i~~~~~~I~~~~~~--~~~~~~~ADd~LP~liyviika~~~~l~S~i~yI~~F~~~~~l--~~gE~~Y~lt~l~aAv~fI  228 (249)
T d2ot3a1         153 ITKCSKHIFNAIKI--TKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL--MTGEDGYYFTNLCCAVAFI  228 (249)
T ss_dssp             HHHHHHHHHHHHHH--HHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTT--TSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--hcCCCCChhHHHHHHHHHHHHcChhhHHHHHHHHHHHhChhhc--cCcHHHHHHHHHHHHHHHH
Confidence            99999999986542  2346789999999999999999999999999999999876643  1499999999999999999


Q ss_pred             HcC
Q psy8454         402 KSG  404 (936)
Q Consensus       402 ~~~  404 (936)
                      ++-
T Consensus       229 ~~l  231 (249)
T d2ot3a1         229 EKL  231 (249)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=304.08  Aligned_cols=243  Identities=28%  Similarity=0.333  Sum_probs=185.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHH
Q psy8454         518 MDDRGFTVLHVAALYGRIKVVDLVLELGAD---TNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHL  594 (936)
Q Consensus       518 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~  594 (936)
                      .+.+|.||||+|++.|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|++.|++++.+|.+|.||||+
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            467899999999999999999999999887   56778889999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHH
Q psy8454         595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK  674 (936)
Q Consensus       595 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  674 (936)
                      |+..|+.+++++|++....         .+......+............                 ..++.....     
T Consensus        85 A~~~~~~~~~~~Ll~~~~~---------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-----  133 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPS---------HPRDASDTYLTQSQDCTPDTS-----------------HAPAAVDSQ-----  133 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCS---------SCCCC-----------------------------------------------
T ss_pred             hhccCchHHHHHHHhhccc---------hhcccchhhhhHHhhhcccch-----------------HHHHHHHhh-----
Confidence            9999999999999875321         011111111000000000000                 000000000     


Q ss_pred             HHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHH
Q psy8454         675 LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKL  754 (936)
Q Consensus       675 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~  754 (936)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (255)
T d1oy3d_         134 --------------------------------------------------------------------------------  133 (255)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8454         755 IKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN  834 (936)
Q Consensus       755 vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~  834 (936)
                                                  ..............+.+++.++.+|.||||+||.+|+.+++++|++++++.+
T Consensus       134 ----------------------------~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~  185 (255)
T d1oy3d_         134 ----------------------------PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN  185 (255)
T ss_dssp             --------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             ----------------------------cchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccc
Confidence                                        0000000012334556678899999999999999999999999999999999


Q ss_pred             cccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         835 IVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       835 ~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      ...+..|.||||+||+.|+.+++++|+++| +++|.+|..|+||||+|++.|+.+++++|+++||+
T Consensus       186 ~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         186 KPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            877688999999999999999999999998 99999999999999999999999999999999996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=297.21  Aligned_cols=275  Identities=28%  Similarity=0.337  Sum_probs=214.4

Q ss_pred             ChHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         456 SLTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRI  535 (936)
Q Consensus       456 ~~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~  535 (936)
                      +.+.|+.|+++|++++|++|++.|++.+..                                .+..|.||||+|+..|+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~--------------------------------~~~~g~tpL~~A~~~~~~   52 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------------------------------EEEGGWTPLHNAVQMSRE   52 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--------------------------------CTTTCCCHHHHHHHTTCH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCcc--------------------------------CCCCCCCHHHHHHHcCCH
Confidence            456788888888888888888888664332                                344688888888888888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccc
Q psy8454         536 KVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEV  615 (936)
Q Consensus       536 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~  615 (936)
                      +++++|++.|...+..+..+.+|.++|+..+..+...++++...+....+..|.++++.|+..|+..+++.++.......
T Consensus        53 eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~  132 (285)
T d1wdya_          53 DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN  132 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhccccc
Confidence            88888888888888888888888888888888888888888877777777888888888888888888888876532211


Q ss_pred             c----ccCcccccCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCcccccc
Q psy8454         616 L----NLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH-GANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYL  690 (936)
Q Consensus       616 ~----~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~  690 (936)
                      .    ..........|.||||.|++.|+.+++++|++. |++++..+..|.++...+                       
T Consensus       133 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~-----------------------  189 (285)
T d1wdya_         133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-----------------------  189 (285)
T ss_dssp             CCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-----------------------
T ss_pred             ccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccc-----------------------
Confidence            0    011234455678888888888888888888864 566655554444443221                       


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCC
Q psy8454         691 VPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDN  770 (936)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~  770 (936)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (285)
T d1wdya_         190 --------------------------------------------------------------------------------  189 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHh
Q psy8454         771 ACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQ  850 (936)
Q Consensus       771 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~  850 (936)
                                                              +..+...+..+++++|+++|++++..+ ..|.||||+|++
T Consensus       190 ----------------------------------------~~~~~~~~~~~i~~~Li~~ga~~n~~~-~~g~t~L~~a~~  228 (285)
T d1wdya_         190 ----------------------------------------LLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILAVE  228 (285)
T ss_dssp             ----------------------------------------HHCSCTTTHHHHHHHHHHTTCCSSCCC-TTSCCHHHHHHH
T ss_pred             ----------------------------------------cccccchHHHHHHHHHHHCCCCCCccC-CCCCCccchhhh
Confidence                                                    011122334679999999999999888 899999999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCccc
Q psy8454         851 NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNH  906 (936)
Q Consensus       851 ~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~  906 (936)
                      .|+.++|++|++.+++++|.+|..|.||||+|+++|+.++|++|+++||++|++|.
T Consensus       229 ~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            99999999999976699999999999999999999999999999999999999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-33  Score=295.00  Aligned_cols=269  Identities=26%  Similarity=0.322  Sum_probs=236.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGADTNSQD-LCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH  600 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  600 (936)
                      +.|+||.|++.|+.++|++|+++|+++|.++ ..|.||||+|+..|+.+++++|++.+......+..+.+|.+.|+..+.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            5799999999999999999999999999775 479999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhh
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYV  680 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~  680 (936)
                      .+...++++..      .+....+..+.|+++.|+..|+...+..++....+.+........                  
T Consensus        85 ~~~~~~~~~~~------~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  140 (285)
T d1wdya_          85 VKLLKLFLSKG------ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED------------------  140 (285)
T ss_dssp             HHHHHHHHHTT------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH------------------
T ss_pred             ccccchhhhhc------ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhh------------------
Confidence            99999999864      234556788999999999999999999999987765543211100                  


Q ss_pred             cCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhc
Q psy8454         681 HKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFG  760 (936)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~  760 (936)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (285)
T d1wdya_         141 --------------------------------------------------------------------------------  140 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCccccccc
Q psy8454         761 LSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINY-RADINIVTRV  839 (936)
Q Consensus       761 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~-g~~v~~~~~~  839 (936)
                                                             .+..+..|.||||.|+++|+.+++++|+++ |++++..+ .
T Consensus       141 ---------------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~-~  180 (285)
T d1wdya_         141 ---------------------------------------QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD-N  180 (285)
T ss_dssp             ---------------------------------------HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-T
T ss_pred             ---------------------------------------hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCccccc-C
Confidence                                                   123356789999999999999999999965 89999988 7


Q ss_pred             CCCcHHHHHHh----CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCcccCCCcHHHH
Q psy8454         840 KQLTPLHIACQ----NNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK-SGARPQIKNHYGQTCLHM  914 (936)
Q Consensus       840 ~g~TpLh~A~~----~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~  914 (936)
                      .|.++++.+..    .+..+++++|++.| +++|.+|..|.||||.|++.|+.++|++|++ .|++++.+|..|+||||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~  259 (285)
T d1wdya_         181 MGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL  259 (285)
T ss_dssp             TSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHH
T ss_pred             CCCcccccccccccchHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            88888776554    33457999999998 9999999999999999999999999999997 599999999999999999


Q ss_pred             HHHcCCHHHHHHHhhhCCCcC
Q psy8454         915 AQQMTSLSLVRVLTHEAPFVL  935 (936)
Q Consensus       915 A~~~g~~~iv~~Ll~~~~~~~  935 (936)
                      |+++|+.++|++|+++|+.+.
T Consensus       260 A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         260 AVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999999999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=286.96  Aligned_cols=218  Identities=30%  Similarity=0.364  Sum_probs=176.3

Q ss_pred             CcHHHHHHHhCcHHHHHHHH-hCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHH
Q psy8454         556 CSPLHYAATRGHQNVLLLLL-HSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAA  634 (936)
Q Consensus       556 ~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  634 (936)
                      .+.|+.+|..|+.+.++.++ +.+..++.+|..|+||||+|+..|+.+++++|+..+      ......+..+.++++.+
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG------VPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT------CCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccc------ccccccccccccccccc
Confidence            45666667777766664443 445666667777777777777777777777777643      33445556667777777


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccc
Q psy8454         635 ARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSD  714 (936)
Q Consensus       635 ~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (936)
                      +..|+.+++++|+++|+++                                                             
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~-------------------------------------------------------------   96 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQV-------------------------------------------------------------   96 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-------------------------------------------------------------
T ss_pred             ccccccchhHHHhccCcee-------------------------------------------------------------
Confidence            7777777777777766543                                                             


Q ss_pred             cccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCcccc
Q psy8454         715 VNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVT  794 (936)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  794 (936)
                                                                                                      
T Consensus        97 --------------------------------------------------------------------------------   96 (223)
T d1uoha_          97 --------------------------------------------------------------------------------   96 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q psy8454         795 DECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYR  874 (936)
Q Consensus       795 ~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~  874 (936)
                            +..|..|.||||+|+.+|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.+ +++|.+|..
T Consensus        97 ------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~-~~~~t~L~~a~~~~~~~~~~~L~~~~-~~i~~~d~~  168 (223)
T d1uoha_          97 ------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD-HYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTE  168 (223)
T ss_dssp             ------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTT
T ss_pred             ------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCccchhhhhcCCcchhhhhcccc-ceeeeccCC
Confidence                  3446778889999999999999999999999999888 88999999999999999999999988 899999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhh
Q psy8454         875 GNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTH  929 (936)
Q Consensus       875 g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~  929 (936)
                      |+||||+|++.|+.++|++|+++||+++.+|..|+||||+| +.|+.+|+++|++
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999999999999999999999998 4799999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-33  Score=292.54  Aligned_cols=243  Identities=24%  Similarity=0.267  Sum_probs=174.5

Q ss_pred             CCCCCCCcHHHHHHHhCcHHHHHHHHhCCCC---CCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCC
Q psy8454         550 SQDLCGCSPLHYAATRGHQNVLLLLLHSGAS---INLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQ  626 (936)
Q Consensus       550 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~  626 (936)
                      ..+.+|.||||+||..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++|      ++++..|.+
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g------a~i~~~d~~   77 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG------AGVLVAERG   77 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCSSCCCTT
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc------ccccccccc
Confidence            3567788888888888888888888888777   4566777888888888888888888888754      567778888


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCC
Q psy8454         627 GDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQ  706 (936)
Q Consensus       627 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (936)
                      |.|||++|+..|+.+++++|++.+........   .......                                      
T Consensus        78 g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~---~~~~~~~--------------------------------------  116 (255)
T d1oy3d_          78 GHTALHLACRVRAHTCACVLLQPRPSHPRDAS---DTYLTQS--------------------------------------  116 (255)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------------
T ss_pred             cchhhhhhhccCchHHHHHHHhhccchhcccc---hhhhhHH--------------------------------------
Confidence            88888888888888888888776543221100   0000000                                      


Q ss_pred             cccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhh
Q psy8454         707 DKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVV  786 (936)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~  786 (936)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (255)
T d1oy3d_         117 --------------------------------------------------------------------------------  116 (255)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCccccccCCCcccCCCCCCcHHHHHHH-cCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCC
Q psy8454         787 ESESRPVTDECLNINICNSDGYTALHIATS-LGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQ  865 (936)
Q Consensus       787 ~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~-~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~  865 (936)
                                   ..........++..... .........+...+.+++.++ ..|.||||+||..|+.+++++|++++ 
T Consensus       117 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~g~TpLh~A~~~~~~~~v~~Ll~~~-  181 (255)
T d1oy3d_         117 -------------QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAG-  181 (255)
T ss_dssp             ----------------------------------------CCCGGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHT-
T ss_pred             -------------hhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccc-ccCcccccccccccccccccchhccc-
Confidence                         00000000011111111 111223333345577788888 89999999999999999999999999 


Q ss_pred             CCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCCc
Q psy8454         866 CNVNA-QDYRGNTALHYAAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPFV  934 (936)
Q Consensus       866 ~dvn~-~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~~  934 (936)
                      ++.+. .+..|.||||+|++.|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|+.-
T Consensus       182 ~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             ccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            66664 5678999999999999999999999999999999999999999999999999999999999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-32  Score=278.74  Aligned_cols=219  Identities=27%  Similarity=0.425  Sum_probs=201.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc
Q psy8454         522 GFTVLHVAALYGRIKVVDLVL-ELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH  600 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~  600 (936)
                      +.++|+.++..|+.+.++.++ +.+..++.+|..|+||||+|+..|+.+++++|++.+......+..+.++++.|+..|+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            468999999999999986665 5678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhh
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYV  680 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~  680 (936)
                      .+++++|++++      ++++.+|..|.||||+|+..|+.+++++|+++|++++.                         
T Consensus        83 ~~i~~~Ll~~~------~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~-------------------------  131 (223)
T d1uoha_          83 DEIVKALLGKG------AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-------------------------  131 (223)
T ss_dssp             HHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------------------------
T ss_pred             cchhHHHhccC------ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC-------------------------
Confidence            99999999865      57889999999999999999999999999999887543                         


Q ss_pred             cCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhc
Q psy8454         681 HKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFG  760 (936)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~  760 (936)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (223)
T d1uoha_         132 --------------------------------------------------------------------------------  131 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccC
Q psy8454         761 LSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVK  840 (936)
Q Consensus       761 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~  840 (936)
                                                                ++..|.||||+|+..|+.+++++|++.|.+++..+ ..
T Consensus       132 ------------------------------------------~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d-~~  168 (223)
T d1uoha_         132 ------------------------------------------KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD-TE  168 (223)
T ss_dssp             ------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TT
T ss_pred             ------------------------------------------cCCCCCccchhhhhcCCcchhhhhccccceeeecc-CC
Confidence                                                      35667889999999999999999999999999998 89


Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454         841 QLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK  896 (936)
Q Consensus       841 g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~  896 (936)
                      |.||||+|+..|+.++|++|++.| +|++.+|..|+||||+| +.|+.+++++|++
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999999999999999999999998 99999999999999998 5799999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=6e-33  Score=294.95  Aligned_cols=251  Identities=22%  Similarity=0.257  Sum_probs=169.4

Q ss_pred             cHHHHHHH-cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHH--------HhCCCCCCcCCCCCCcHHHH
Q psy8454         524 TVLHVAAL-YGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLL--------LHSGASINLTDNEGNTALHL  594 (936)
Q Consensus       524 t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~L--------l~~g~~~~~~d~~g~t~L~~  594 (936)
                      ||||+|++ .|+.++++.|.+.+++.... ..|+||||+||..|+.+++++|        ++.|+++|.+|.+|+||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            56665553 45666666666666554322 3477777777777777766554        45677777777777777777


Q ss_pred             HHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCC---CCCCCcccCCCChhhhhhchh
Q psy8454         595 ATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG---ANPTLENKRKVTPLQNANNLH  671 (936)
Q Consensus       595 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g---a~~~~~d~~g~t~l~~a~~~~  671 (936)
                      |+..|+.++|++|+++|      ++++.++..|.|||+.|+..++.++++++...+   ...+..+.             
T Consensus        81 A~~~g~~~iv~~Ll~~G------ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------  141 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAG------ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-------------  141 (277)
T ss_dssp             HHHHTCHHHHHHHHHTT------CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-------------
T ss_pred             ccccccccccccccccc------cccccccccccccccchhhhcchhhhhhhhhccccccccccccc-------------
Confidence            77777777777777654      456667777777777777777777777665432   11222223             


Q ss_pred             HHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCc
Q psy8454         672 VAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNE  751 (936)
Q Consensus       672 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~  751 (936)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (277)
T d2fo1e1         142 --------------------------------------------------------------------------------  141 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHh
Q psy8454         752 IKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH---YDLVRLLIN  828 (936)
Q Consensus       752 ~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~---~~~v~~LL~  828 (936)
                                                                            .+.++.+.+...+.   ...+..+.+
T Consensus       142 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (277)
T d2fo1e1         142 ------------------------------------------------------NGMTALMIVAHNEGRDQVASAKLLVE  167 (277)
T ss_dssp             ------------------------------------------------------TSCCHHHHHHHSCSTTHHHHHHHHHH
T ss_pred             ------------------------------------------------------ccchhHHHHHhccccccccccccccc
Confidence                                                                  33333333333332   112222222


Q ss_pred             CCC--------CcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         829 YRA--------DINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       829 ~g~--------~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      ...        ..+..+ ..|.||||+++..++.+++++++...+.+++.+|..|+||||+|++.|+.++|++|+++||+
T Consensus       168 ~~~~~~~~~~~~~~~~~-~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad  246 (277)
T d2fo1e1         168 KGAKVDYDGAARKDSEK-YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS  246 (277)
T ss_dssp             HTCCSSCCSGGGTSSSS-CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccc-cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            211        112223 67788888888888888888777666588888888888999999888888889988888888


Q ss_pred             CcCcccCCCcHHHHHHHcCCHHHHHHHhh
Q psy8454         901 PQIKNHYGQTCLHMAQQMTSLSLVRVLTH  929 (936)
Q Consensus       901 ~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~  929 (936)
                      ++++|..|+||||+|++.|+.+||++|++
T Consensus       247 in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         247 VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            88888888899999999998888888874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-31  Score=272.11  Aligned_cols=126  Identities=25%  Similarity=0.340  Sum_probs=107.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      +..+.|+++.++..++.++++.|++.|.+.+..+ ..|+||||+|+..|+.+++++|++.+..++|.+|..|+||||+|+
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~  180 (229)
T d1ixva_         102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL  180 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccccC-CCCCCccchhhhcccccccccccccccccccccccccCCchhhhc
Confidence            5566788888888888888888888888888777 788889999988888999988888887888888888999999999


Q ss_pred             HcCCHHHHHHHHH-cCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         884 INNHTNLATLLLK-SGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       884 ~~g~~~iv~~LL~-~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      ++|+.++|++|++ .|++++++|..|+||||+|+.   .+++++|+++|++
T Consensus       181 ~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            9999999998886 588999998889999998874   5788899888874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.3e-31  Score=271.34  Aligned_cols=223  Identities=25%  Similarity=0.288  Sum_probs=196.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCc---CCCCCCcHHHHHHHc
Q psy8454         523 FTVLHVAALYGRIKVVDLVLEL-GADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINL---TDNEGNTALHLATNN  598 (936)
Q Consensus       523 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~---~d~~g~t~L~~A~~~  598 (936)
                      +||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+++|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4899999999999999988874 688999999999999999999999999999999999864   567789999999999


Q ss_pred             CcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHH
Q psy8454         599 GHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNA  678 (936)
Q Consensus       599 g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~  678 (936)
                      +..++++.++..+.    .......+..+.|+++.++..++.+++++|++.|.+..                        
T Consensus        81 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~------------------------  132 (229)
T d1ixva_          81 GNLEVVKSLYDRPL----KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR------------------------  132 (229)
T ss_dssp             TCHHHHHHHHSSSS----CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC------------------------
T ss_pred             cccccccccccccc----cccccccccccccccccccccchhhhhhhhhhhccccc------------------------
Confidence            99999999987653    23456677888999999999999999999998876533                        


Q ss_pred             hhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHH
Q psy8454         679 YVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSY  758 (936)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~L  758 (936)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (229)
T d1ixva_         133 --------------------------------------------------------------------------------  132 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCccccc
Q psy8454         759 FGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYR-ADINIVT  837 (936)
Q Consensus       759 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g-~~v~~~~  837 (936)
                                                                 ..+..|.||||+|+..|+.+++++|++.| .+++.++
T Consensus       133 -------------------------------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d  169 (229)
T d1ixva_         133 -------------------------------------------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  169 (229)
T ss_dssp             -------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCC
T ss_pred             -------------------------------------------ccCCCCCCccchhhhcccccccccccccccccccccc
Confidence                                                       33667889999999999999999999987 6778887


Q ss_pred             ccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         838 RVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       838 ~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                       ..|.||||+|++.|+.++|++|++..++|++.+|..|+||||+|+.   .+++++|+++|+|
T Consensus       170 -~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         170 -KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             -TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             -cccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence             8999999999999999999999976339999999999999999984   5799999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.8e-31  Score=282.40  Aligned_cols=118  Identities=36%  Similarity=0.432  Sum_probs=65.9

Q ss_pred             CcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHH
Q psy8454         556 CSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAA  635 (936)
Q Consensus       556 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  635 (936)
                      .|+|+.||..|+.++|++|+++|++++.+|.+|.||||+|+.+|+.++|++|++++      .+.+..+..+.|||+.|+
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~------~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG------ANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccc------cccccccccccccccccc
Confidence            35555555555555555555555555555555555555555555555555555543      233444555555666666


Q ss_pred             HhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHh
Q psy8454         636 RWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAY  679 (936)
Q Consensus       636 ~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~  679 (936)
                      ..|+.+++++|++.|+..+..+..+.+++++|...+..+.+..+
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l  158 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE  158 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhcccc
Confidence            65666666666665555555555556666555554444444333

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=4.4e-32  Score=288.20  Aligned_cols=233  Identities=24%  Similarity=0.304  Sum_probs=195.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHH--------HhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcH
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLV--------LELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTA  591 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~  591 (936)
                      ..|.||||+|+..|+.+++++|        ++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            3599999999999999998776        56799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHH---HHHHHHCCCCCCCcccCCCChhhhhh
Q psy8454         592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSI---IQLLLDHGANPTLENKRKVTPLQNAN  668 (936)
Q Consensus       592 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~i---v~~Ll~~ga~~~~~d~~g~t~l~~a~  668 (936)
                      +++|+..++.++++++.....   ....++..+..+.++.+.+...+..+.   +..+.+......              
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  173 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTK---LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD--------------  173 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHH---HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS--------------
T ss_pred             ccchhhhcchhhhhhhhhccc---ccccccccccccchhHHHHHhccccccccccccccccccccc--------------
Confidence            999999999999999987643   223567778889999998887664332   222222111000              


Q ss_pred             chhHHHHHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHH
Q psy8454         669 NLHVAKLLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIE  748 (936)
Q Consensus       669 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~  748 (936)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (277)
T d2fo1e1         174 --------------------------------------------------------------------------------  173 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH-
Q psy8454         749 NNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLI-  827 (936)
Q Consensus       749 ~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL-  827 (936)
                                                                   .......+..+..|.||||.++..++.+++++++ 
T Consensus       174 ---------------------------------------------~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~  208 (277)
T d2fo1e1         174 ---------------------------------------------YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG  208 (277)
T ss_dssp             ---------------------------------------------CCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred             ---------------------------------------------ccccccccccccCCCCccccccccccccccccccc
Confidence                                                         0011113556788999999999999999998755 


Q ss_pred             hCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy8454         828 NYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLK  896 (936)
Q Consensus       828 ~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~  896 (936)
                      ..+.+++..+ ..|.||||+||+.|+.++|++|+++| +|+|.+|..|+||||+|+++|+.++|++|++
T Consensus       209 ~~~~~~~~~d-~~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         209 EKGSNKDKQD-EDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HSCCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccccccC-CCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            7788888888 89999999999999999999999998 9999999999999999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.1e-31  Score=282.97  Aligned_cols=124  Identities=31%  Similarity=0.375  Sum_probs=116.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC
Q psy8454         520 DRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNG  599 (936)
Q Consensus       520 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g  599 (936)
                      ..|.|+|+.||..|+.++|++|+++|+++|.+|.+|.||||+|+..|+.+++++|+++|++....+..+.+||+.|+..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         600 HETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       600 ~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                      +.+++++|++++      ...+..+..+.+++++|+..+..+.++.++..
T Consensus       118 ~~~~~~~l~~~~------~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~  161 (291)
T d1s70b_         118 YLDIAEYLISQG------AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (291)
T ss_dssp             CHHHHHHHHHTT------CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             ccchhhcccccC------cccccccccCccccccccccccchhccccccc
Confidence            999999999876      45677889999999999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-28  Score=250.23  Aligned_cols=121  Identities=40%  Similarity=0.502  Sum_probs=98.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      ...+.++|+.+.........+.|.....+........|.+||+.|+..+...+++.+++.| .+++.+|..|.||||+|+
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         107 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhc-cccccccccCcchHHHHH
Confidence            3445567777777777777788877777766666577888888888888888888888887 788888888888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHH
Q psy8454         884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVR  925 (936)
Q Consensus       884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~  925 (936)
                      ..|+.++|++|+++|||++.+|..|+||||+|+++|+.++||
T Consensus       186 ~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            888888888888888888888888888888888888888774

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-28  Score=247.58  Aligned_cols=222  Identities=27%  Similarity=0.353  Sum_probs=192.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy8454         521 RGFTVLHVAALYGRIKVVDLVLE----LGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT  596 (936)
Q Consensus       521 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~  596 (936)
                      +|.||||+|+..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++.+..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            59999999999999999998875    79999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL  676 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll  676 (936)
                      ..++.++++.+......  .....+.......++|+.+.........+.|.....+..                      
T Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~----------------------  137 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAP--GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID----------------------  137 (228)
T ss_dssp             HTTCHHHHHHHHHHSCT--TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------------
T ss_pred             ccccccchhhhhhcccc--ccccccccccccccccccccccccchhhhhhhccccccc----------------------
Confidence            99999999988775422  122345556667788888888888777777766543321                      


Q ss_pred             HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454         677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK  756 (936)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk  756 (936)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (228)
T d1k1aa_         138 --------------------------------------------------------------------------------  137 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccc
Q psy8454         757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIV  836 (936)
Q Consensus       757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~  836 (936)
                                                                  ......|.++|+.|+..+...+++.++++|..++..
T Consensus       138 --------------------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  173 (228)
T d1k1aa_         138 --------------------------------------------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ  173 (228)
T ss_dssp             --------------------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCB
T ss_pred             --------------------------------------------cccccchhhHHHHHHHhhhhhhhhhhhhhccccccc
Confidence                                                        222556789999999999999999999999999998


Q ss_pred             cccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy8454         837 TRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLAT  892 (936)
Q Consensus       837 ~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~  892 (936)
                      + ..|.||||+|+..|+.+++++|+++| +|+|.+|..|+||||+|+++|+.++||
T Consensus       174 d-~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         174 M-YSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             C-TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             c-ccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            8 89999999999999999999999998 999999999999999999999999885

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-28  Score=249.85  Aligned_cols=97  Identities=29%  Similarity=0.372  Sum_probs=87.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Q psy8454         803 CNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYA  882 (936)
Q Consensus       803 ~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A  882 (936)
                      ....|.||||.|+..|+.+++++|+..|+.++..++..|.||||+|++.|+.+++++|+++| +|++.+|..|+||||+|
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGC
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCHHHHH
Confidence            35567899999999999999999999999998888778999999999999999999999998 99999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCC
Q psy8454         883 AINNHTNLATLLLKSGAR  900 (936)
Q Consensus       883 ~~~g~~~iv~~LL~~Ga~  900 (936)
                      ++.++.+++++|++.+.+
T Consensus       186 ~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         186 WGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TTSSCHHHHHHHHTTSCG
T ss_pred             HHCCCHHHHHHHHHcCCc
Confidence            999999999999987654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.4e-27  Score=241.74  Aligned_cols=122  Identities=32%  Similarity=0.334  Sum_probs=113.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHH
Q psy8454         804 NSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAA  883 (936)
Q Consensus       804 d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~  883 (936)
                      ...|.++.+.+.........+.|.+.+++++..+ ..|.|||++|+..|..++++.+++.+ .+++.+|..|.||||+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL~~A~  164 (209)
T d1ot8a_          87 MHDGTTPLILAARLAIEGMVEDLITADADINAAD-NSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAA  164 (209)
T ss_dssp             CTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccC-CCCCCcchhhcccCcceeeeeecccc-ccccccccccccccchhc
Confidence            4557788888888888999999999999999888 88999999999999999999999998 899999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHH
Q psy8454         884 INNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVL  927 (936)
Q Consensus       884 ~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~L  927 (936)
                      ..|+.++|++|+++||+++.+|..|.||||+|+++|+.+||++|
T Consensus       165 ~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         165 REGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-28  Score=248.08  Aligned_cols=197  Identities=31%  Similarity=0.368  Sum_probs=173.0

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy8454         521 RGFTVLHVAALYGRIK----VVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLAT  596 (936)
Q Consensus       521 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~  596 (936)
                      +|.||||+|+..|+.+    +++.+...|+++|.+|..|+||||+|+..|+.+++++|++.|++++..|..|.|||+.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4899999999999964    456667789999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHH
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLL  676 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll  676 (936)
                      ..|+.+++++|+..+...............|.|||+.|+..|+.+++++|+..|+..+..                    
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~--------------------  140 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ--------------------  140 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC--------------------
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc--------------------
Confidence            999999999999876554444555667778999999999999999999999887764422                    


Q ss_pred             HHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHH
Q psy8454         677 NAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIK  756 (936)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk  756 (936)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (221)
T d1iknd_         141 --------------------------------------------------------------------------------  140 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccc
Q psy8454         757 SYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIV  836 (936)
Q Consensus       757 ~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~  836 (936)
                                                                    .+.+|.||||+|++.|+.+++++|+++|++++.+
T Consensus       141 ----------------------------------------------~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         141 ----------------------------------------------EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             ----------------------------------------------CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             ----------------------------------------------cccCCCCccccccccccHHHHHHHHhcCCccccc
Confidence                                                          2457899999999999999999999999999999


Q ss_pred             cccCCCcHHHHHHhCCCHHHHHHHHhcC
Q psy8454         837 TRVKQLTPLHIACQNNNLSIVRLLLAAK  864 (936)
Q Consensus       837 ~~~~g~TpLh~A~~~g~~~iv~~LL~~g  864 (936)
                      + ..|.||||+|++.++.+++++|++.+
T Consensus       175 ~-~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         175 T-YQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             C-TTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             C-CCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9 89999999999999999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.9e-27  Score=238.31  Aligned_cols=206  Identities=28%  Similarity=0.355  Sum_probs=171.5

Q ss_pred             HHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy8454         535 IKVVDLVLELGADTNS-QDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQ  613 (936)
Q Consensus       535 ~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  613 (936)
                      .|+|++|+++|+++|. .|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++............ 
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA-   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT-
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc-
Confidence            4788888888888886 47788888888888888888888888888888888888888888888888777666665321 


Q ss_pred             cccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHHHHHHhhcCCCccccccCCC
Q psy8454         614 EVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAKLLNAYVHKPKPLYNYLVPK  693 (936)
Q Consensus       614 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~ll~~~~~~~~~~~~~~~~~  693 (936)
                          .........|.++.+.+.........+.|...++++                                        
T Consensus        81 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~----------------------------------------  116 (209)
T d1ot8a_          81 ----TNLNARMHDGTTPLILAARLAIEGMVEDLITADADI----------------------------------------  116 (209)
T ss_dssp             ----CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT----------------------------------------
T ss_pred             ----cccccccccccccccccccccchhhhhhhhhhcccc----------------------------------------
Confidence                223344555667777777777777777766665543                                        


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCc
Q psy8454         694 EKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKLIKSYFGLSNEEKVPDNACH  773 (936)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~  773 (936)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (209)
T d1ot8a_         117 --------------------------------------------------------------------------------  116 (209)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCC
Q psy8454         774 PLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNN  853 (936)
Q Consensus       774 ~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~  853 (936)
                                                 +.++..|.|||+.|+.+|...+++.+++.+.+++..+ ..|.||||+||..|+
T Consensus       117 ---------------------------~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d-~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_         117 ---------------------------NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD-DKDETPLFLAAREGS  168 (209)
T ss_dssp             ---------------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTC
T ss_pred             ---------------------------cccCCCCCCcchhhcccCcceeeeeeccccccccccc-cccccccchhccccH
Confidence                                       4446778899999999999999999999999999998 889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy8454         854 LSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLL  894 (936)
Q Consensus       854 ~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~L  894 (936)
                      .++|++|+++| +|++.+|..|+||||+|+++|+.++|++|
T Consensus       169 ~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         169 YEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999 99999999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2e-28  Score=267.61  Aligned_cols=136  Identities=21%  Similarity=0.171  Sum_probs=115.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHH---HHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCC--CCCCcH
Q psy8454         517 SMDDRGFTVLHVAALYGRIKVVDL---VLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTD--NEGNTA  591 (936)
Q Consensus       517 ~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d--~~g~t~  591 (936)
                      .++..|.||||+|+++|+.+++++   |++.|+++|.+|..|.||||+||+.|+.++|++|++.|++++..+  .+|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            367789999999999999887765   788999999999999999999999999999999999999998765  469999


Q ss_pred             HHHHHHcCcHHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q psy8454         592 LHLATNNGHETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLDHGANPTL  655 (936)
Q Consensus       592 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  655 (936)
                      ||+|+.+||.++|++|++.++..   ...+..+.++.||++.|+++|+.+++++|++.|++++.
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTE---ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGG---HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcc---cccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            99999999999999999977432   12344556678899999999999999999999886553

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=6.9e-28  Score=263.25  Aligned_cols=250  Identities=15%  Similarity=0.082  Sum_probs=168.7

Q ss_pred             HcCCHHHHHHHHhcCCCCC-----------CCCCCCCcHHHHHHHhCcHHHHHH---HHhCCCCCCcCCCCCCcHHHHHH
Q psy8454         531 LYGRIKVVDLVLELGADTN-----------SQDLCGCSPLHYAATRGHQNVLLL---LLHSGASINLTDNEGNTALHLAT  596 (936)
Q Consensus       531 ~~g~~~~v~~Ll~~g~~~~-----------~~~~~g~t~L~~A~~~g~~~iv~~---Ll~~g~~~~~~d~~g~t~L~~A~  596 (936)
                      ..+..++.+.+...+++.+           .++..|.||||+|+.+|+.+++++   |++.|++++.+|..|.||||+||
T Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa  134 (346)
T d2ajaa1          55 TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  134 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHH
Confidence            3344556666655444333           345578999999999999887765   78999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcccccccccCccccc--CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhhchhHHH
Q psy8454         597 NNGHETCVKALIYFNEQEVLNLNINAVN--NQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNANNLHVAK  674 (936)
Q Consensus       597 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~  674 (936)
                      .+||.++|++|++.|+      +++..+  .+|.||||+|++.|+.++|++|++.|++...                   
T Consensus       135 ~~G~~~~v~~Ll~~g~------~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~-------------------  189 (346)
T d2ajaa1         135 ENGHLHVLNRLCELAP------TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT-------------------  189 (346)
T ss_dssp             HTTCHHHHHHHHHSCT------TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH-------------------
T ss_pred             HCCCHHHHHHHHHcCC------CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc-------------------
Confidence            9999999999998763      455544  4689999999999999999999998764221                   


Q ss_pred             HHHHhhcCCCccccccCCCCCCCCCCCCCCCCcccccccccccccccccccccCCCCcchhhhhhHHHHHHHHHcCcHHH
Q psy8454         675 LLNAYVHKPKPLYNYLVPKEKVSRPPSPPPTQDKYLDYSDVNEANISNVNVREGVRPRNITEIKKVEQLFALIENNEIKL  754 (936)
Q Consensus       675 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~g~~~~  754 (936)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (346)
T d2ajaa1         190 --------------------------------------------------------------------------------  189 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcc
Q psy8454         755 IKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHYDLVRLLINYRADIN  834 (936)
Q Consensus       755 vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~~~v~~LL~~g~~v~  834 (936)
                                                                   .+..+.+|.||++.|+.+|+.+++++|+++|++++
T Consensus       190 ---------------------------------------------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         190 ---------------------------------------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             ---------------------------------------------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence                                                         01112234456666777777777777777776654


Q ss_pred             cccc------cCCCcHHHHHHhCCCHHHHHHHHhcC-CCCCCCCCC-------CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy8454         835 IVTR------VKQLTPLHIACQNNNLSIVRLLLAAK-QCNVNAQDY-------RGNTALHYAAINNHTNLATLLLKSGAR  900 (936)
Q Consensus       835 ~~~~------~~g~TpLh~A~~~g~~~iv~~LL~~g-~~dvn~~d~-------~g~TpL~~A~~~g~~~iv~~LL~~Ga~  900 (936)
                      ....      ..+.++++.++..+..++...++... ....+..+.       .+.++|+.|+..|+.+++++|++.|+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~  304 (346)
T d2ajaa1         225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI  304 (346)
T ss_dssp             HHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTT
T ss_pred             hHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcCh
Confidence            3220      12223444444444444333333221 011122221       234788899999999999999987753


Q ss_pred             -----CcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         901 -----PQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       901 -----~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                           .+..+..|+||||+|++.||.++|++|++-
T Consensus       305 ~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         305 KALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             GGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                 344556789999999999999999999864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=207.63  Aligned_cols=153  Identities=22%  Similarity=0.302  Sum_probs=143.0

Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH  819 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~  819 (936)
                      -+.|+.|+..|+.++|++|++.                                  .+.++|..|..|.||||+|+ .|+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~----------------------------------~~~~~n~~d~~g~t~L~~A~-~~~   47 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHR----------------------------------ELVHPDALNRFGKTALQVMM-FGS   47 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT----------------------------------TCCCTTCCCTTSCCHHHHSC-TTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHh----------------------------------CCCCCCccCCCCCccccccc-ccc
Confidence            3569999999999999999863                                  34568899999999999987 588


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA  899 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga  899 (936)
                      .+++++|++++++++..+ ..|.+|++.|+..++.++++++++.| +++|.+|..|+||||+|++.|+.+++++|+ .|+
T Consensus        48 ~~~v~~Ll~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~  124 (156)
T d1bd8a_          48 TAIALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AES  124 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccc-cccccccCCCCeeecccccccccccccccc-ccc
Confidence            999999999999999988 89999999999999999999999999 999999999999999999999999999887 799


Q ss_pred             CCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      +++.+|..|+||||+|+++|+.+++++|++|
T Consensus       125 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         125 DLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-24  Score=204.15  Aligned_cols=153  Identities=25%  Similarity=0.359  Sum_probs=145.2

Q ss_pred             HHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCCH
Q psy8454         741 EQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGHY  820 (936)
Q Consensus       741 ~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~~  820 (936)
                      ++||.|+..|+.++|++|++                                   .|+++|.+|.+|.||||+|+ .|+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-----------------------------------~g~d~n~~d~~g~TpL~~A~-~~~~   46 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-----------------------------------NNVNVNAQNGFGRTALQVMK-LGNP   46 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-----------------------------------SCCCTTCCCTTSCCHHHHCC-SSCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-----------------------------------CCCCcCccCCcccccccccc-cccc
Confidence            78999999999999999986                                   45668889999999999886 7999


Q ss_pred             HHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-
Q psy8454         821 DLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA-  899 (936)
Q Consensus       821 ~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga-  899 (936)
                      +++++|+++|++++..+ ..|.++++.++..++.++++.|+..+ .+++..|..|.+|||+|++.|+.+++++|+++|+ 
T Consensus        47 ei~~~Ll~~~a~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  124 (156)
T d1ihba_          47 EIARRLLLRGANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  124 (156)
T ss_dssp             HHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             ccccccccccccccccc-ccCccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999998 89999999999999999999999998 8999999999999999999999999999999987 


Q ss_pred             CCcCcccCCCcHHHHHHHcCCHHHHHHHhhhC
Q psy8454         900 RPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEA  931 (936)
Q Consensus       900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~  931 (936)
                      +++.+|..|.||||+|++.|+.++|++|+++|
T Consensus       125 ~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            89999999999999999999999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-24  Score=196.15  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=115.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCC-cHHHHHHHc
Q psy8454         807 GYTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGN-TALHYAAIN  885 (936)
Q Consensus       807 g~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~-TpL~~A~~~  885 (936)
                      +.++||+||.+|+.+++++|+++|++++..+ ..|.||||+|+ .|+.+++++|+++| +++|.++..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~-~~g~t~l~~a~-~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccc-ccccccccccc-cccccccccccccc-ccccccccccccccccccccc
Confidence            5689999999999999999999999999998 89999999775 79999999999999 99999999876 699999999


Q ss_pred             CCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhh
Q psy8454         886 NHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHE  930 (936)
Q Consensus       886 g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~  930 (936)
                      |+.++|++|+++|++++.+|..|+||||+|+++|+.+++++|+..
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.5e-23  Score=195.24  Aligned_cols=150  Identities=25%  Similarity=0.376  Sum_probs=140.1

Q ss_pred             HHHHHHHHHcCcHHHHHHHhcCCcCCCCCCCCCcccchhcccchhhhhccCccccccCCCcccCCCCCCcHHHHHHHcCC
Q psy8454         740 VEQLFALIENNEIKLIKSYFGLSNEEKVPDNACHPLCQCAKCKEDVVESESRPVTDECLNINICNSDGYTALHIATSLGH  819 (936)
Q Consensus       740 ~~~l~~ai~~g~~~~vk~Ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~d~n~~d~~g~t~L~~Aa~~g~  819 (936)
                      .+||+.|++.|+.+++++|++.+                                   ++++ .|..|.||||+|+..++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g-----------------------------------a~~~-~~~~g~t~L~~a~~~~~   46 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG-----------------------------------APFT-TDWLGTSPLHLAAQYGH   46 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT-----------------------------------CCCC-CCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC-----------------------------------CCcc-cccCCCccccccccccc
Confidence            37999999999999999999754                                   3344 58899999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy8454         820 YDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHTNLATLLLKSGA  899 (936)
Q Consensus       820 ~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~~iv~~LL~~Ga  899 (936)
                      .++++.++.......... ..+.++++.++...+.+++++++..+ ++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus        47 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga  124 (153)
T d1awcb_          47 FSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccccccccccccc-cccccccccccccccceeeecccccC-CccccccccCchHHHhhhhcchhheeeecccccc
Confidence            999999999988887776 78889999999999999999999998 8999999999999999999999999999999999


Q ss_pred             CCcCcccCCCcHHHHHHHcCCHHHHHHH
Q psy8454         900 RPQIKNHYGQTCLHMAQQMTSLSLVRVL  927 (936)
Q Consensus       900 ~~~~~d~~g~T~L~~A~~~g~~~iv~~L  927 (936)
                      +++.+|.+|.||||+|+.+|+.+++++|
T Consensus       125 d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         125 DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=194.79  Aligned_cols=152  Identities=31%  Similarity=0.484  Sum_probs=139.4

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      ++|+.|+..|++++|+.||+.+..                                .++.+|..|.||||+|+ .|+.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~--------------------------------~~n~~d~~g~t~L~~A~-~~~~~~   50 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELV--------------------------------HPDALNRFGKTALQVMM-FGSTAI   50 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCC--------------------------------CTTCCCTTSCCHHHHSC-TTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCC--------------------------------CCCccCCCCCccccccc-cccccc
Confidence            479999999999999999987543                                23347889999999987 489999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN  617 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~  617 (936)
                      +++|++++++++..+..|.+|++.++..++.++++++++.|++++.+|..|.||||+|+..|+.+++++|+.       +
T Consensus        51 v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-------~  123 (156)
T d1bd8a_          51 ALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-------E  123 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-------T
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc-------c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999984       3


Q ss_pred             cCcccccCCCChHHHHHHHhCCHHHHHHHHHC
Q psy8454         618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDH  649 (936)
Q Consensus       618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  649 (936)
                      ++++.+|.+|.||||+|++.|+.+++++|+++
T Consensus       124 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            57899999999999999999999999999874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=193.21  Aligned_cols=154  Identities=30%  Similarity=0.443  Sum_probs=141.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      ++|+.|+..|++++|+.|++.|.+.+                                 .+|..|.||||+|+ .|+.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n---------------------------------~~d~~g~TpL~~A~-~~~~ei   48 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN---------------------------------AQNGFGRTALQVMK-LGNPEI   48 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT---------------------------------CCCTTSCCHHHHCC-SSCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC---------------------------------ccCCcccccccccc-cccccc
Confidence            58999999999999999999987643                                 36788999999886 789999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN  617 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~  617 (936)
                      +++|+++|++++..+..|.++++.++..++.+.++.|++.+.+++..+..|.+|+|+|+..++.+++++|+++++     
T Consensus        49 ~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~-----  123 (156)
T d1ihba_          49 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA-----  123 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC-----
T ss_pred             cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998763     


Q ss_pred             cCcccccCCCChHHHHHHHhCCHHHHHHHHHCC
Q psy8454         618 LNINAVNNQGDSPLHAAARWGYTSIIQLLLDHG  650 (936)
Q Consensus       618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  650 (936)
                      .+.+.+|..|.||||+|++.|+.+++++|+++|
T Consensus       124 ~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            467888999999999999999999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=4.3e-24  Score=193.44  Aligned_cols=115  Identities=27%  Similarity=0.325  Sum_probs=107.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCC
Q psy8454         808 YTALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNH  887 (936)
Q Consensus       808 ~t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~  887 (936)
                      .|||++|+++|+.+++++|+++|++++..+ ..|+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+++|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~-~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCS-SSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccc-cccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCc
Confidence            379999999999999999999999999998 89999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHh
Q psy8454         888 TNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLT  928 (936)
Q Consensus       888 ~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll  928 (936)
                      .++|++|+++|++++.+|..|+||||+|..    +.++.|+
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCCTCSS----TTTGGGG
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHHHHhH----HHHHHhc
Confidence            999999999999999999999999999843    3455544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.4e-23  Score=188.71  Aligned_cols=121  Identities=27%  Similarity=0.250  Sum_probs=113.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCcccccccCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy8454         809 TALHIATSLGHYDLVRLLINYRADINIVTRVKQLTPLHIACQNNNLSIVRLLLAAKQCNVNAQDYRGNTALHYAAINNHT  888 (936)
Q Consensus       809 t~L~~Aa~~g~~~~v~~LL~~g~~v~~~~~~~g~TpLh~A~~~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~A~~~g~~  888 (936)
                      ++|+.||..|+.+++++|+++|++++.++ ..|+||||+||..|+.+++++|++.| +++|.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d-~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCC-TTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccc-cccccccccccccccccccccccccc-cccccccccCcccccccchhhHH
Confidence            57999999999999999999999999999 89999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcCccc-CCCcHHHHH--HHcCCHHHHHHHhhhC
Q psy8454         889 NLATLLLKSGARPQIKNH-YGQTCLHMA--QQMTSLSLVRVLTHEA  931 (936)
Q Consensus       889 ~iv~~LL~~Ga~~~~~d~-~g~T~L~~A--~~~g~~~iv~~Ll~~~  931 (936)
                      ++|++|+++||+++..+. .|.||+++|  .+.|+.+++++|++..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999998765 588987776  5779999999998753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.2e-23  Score=220.78  Aligned_cols=93  Identities=20%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             HHHHHHHhcCCCCCCC-CCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCc-------HHHHHHH
Q psy8454         536 KVVDLVLELGADTNSQ-DLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGH-------ETCVKAL  607 (936)
Q Consensus       536 ~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-------~eiv~~L  607 (936)
                      ++...+...++++|.. |..|+||||+||..|+.++|++|++.|++++.+|..|+||||.|+..++       .+++++|
T Consensus        87 ~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l  166 (301)
T d1sw6a_          87 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL  166 (301)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH
Confidence            3333334457788865 8889999999999999999999999999999999999999999998765       2445554


Q ss_pred             HhcccccccccCcccccCCCChHHHHHHHh
Q psy8454         608 IYFNEQEVLNLNINAVNNQGDSPLHAAARW  637 (936)
Q Consensus       608 l~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  637 (936)
                      ..         .++..|..|+||||.++..
T Consensus       167 ~~---------~~~~~d~~g~t~lh~~~~~  187 (301)
T d1sw6a_         167 YP---------CLILEDSMNRTILHHIIIT  187 (301)
T ss_dssp             GG---------GGGEECTTCCCHHHHHHHH
T ss_pred             hh---------hhhhcccccCCHHHHHHHH
Confidence            43         3466778888888887643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.8e-21  Score=182.53  Aligned_cols=149  Identities=30%  Similarity=0.482  Sum_probs=121.8

Q ss_pred             HHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHcCCHHH
Q psy8454         458 TKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALYGRIKV  537 (936)
Q Consensus       458 ~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  537 (936)
                      |+|+.|++.|+.++|+.||+.|++..                                  .+..|.||||+|+..++.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~----------------------------------~~~~g~t~L~~a~~~~~~~~   49 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT----------------------------------TDWLGTSPLHLAAQYGHFST   49 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC----------------------------------CCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc----------------------------------cccCCCcccccccccccccc
Confidence            67888888888888888888875421                                  35668888888888888888


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcccccccc
Q psy8454         538 VDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNEQEVLN  617 (936)
Q Consensus       538 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~  617 (936)
                      ++.++.........+..+.++++.++...+.++++++.+.|++++.+|..|.||||+|+..|+.++|++|+++|      
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g------  123 (153)
T d1awcb_          50 TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG------  123 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccc------
Confidence            88888877777777777888888888888888888888888888888888888888888888888888888765      


Q ss_pred             cCcccccCCCChHHHHHHHhCCHHHHHHH
Q psy8454         618 LNINAVNNQGDSPLHAAARWGYTSIIQLL  646 (936)
Q Consensus       618 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~L  646 (936)
                      ++++..|.+|.|||++|+.+|+.+++++|
T Consensus       124 ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            56778888888888888888888888765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=179.12  Aligned_cols=120  Identities=26%  Similarity=0.314  Sum_probs=113.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCC-cHHHHHHHcCc
Q psy8454         522 GFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGN-TALHLATNNGH  600 (936)
Q Consensus       522 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~  600 (936)
                      +.++||+|+..|+.+++++|+++|+++|.++..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999999999999775 7999999999999999999998876 69999999999


Q ss_pred             HHHHHHHHhcccccccccCcccccCCCChHHHHHHHhCCHHHHHHHHH
Q psy8454         601 ETCVKALIYFNEQEVLNLNINAVNNQGDSPLHAAARWGYTSIIQLLLD  648 (936)
Q Consensus       601 ~eiv~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  648 (936)
                      .+++++|+++|      ++++.+|..|.||||+|++.|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~g------a~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAG------ARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHT------CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc------cccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999865      6789999999999999999999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.7e-21  Score=180.14  Aligned_cols=123  Identities=25%  Similarity=0.294  Sum_probs=112.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCccccc-----ccCCCcHHHHHHh---CCCHHHHHHHHhcCCCCCCCCCCCCCcHHHH
Q psy8454         810 ALHIATSLGHYDLVRLLINYRADINIVT-----RVKQLTPLHIACQ---NNNLSIVRLLLAAKQCNVNAQDYRGNTALHY  881 (936)
Q Consensus       810 ~L~~Aa~~g~~~~v~~LL~~g~~v~~~~-----~~~g~TpLh~A~~---~g~~~iv~~LL~~g~~dvn~~d~~g~TpL~~  881 (936)
                      .|..|++.++...+..++..|++++...     +..|+||||+|++   .|+.++|++|+++| +++|.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccc
Confidence            4667889999999999999999877651     3678999999997   47899999999999 9999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCcCcccCCCcHHHHHHHcCCHHHHHHHhhhCCC
Q psy8454         882 AAINNHTNLATLLLKSGARPQIKNHYGQTCLHMAQQMTSLSLVRVLTHEAPF  933 (936)
Q Consensus       882 A~~~g~~~iv~~LL~~Ga~~~~~d~~g~T~L~~A~~~g~~~iv~~Ll~~~~~  933 (936)
                      |++.|+.++|++|+++|++++.+|..|+||||+|++.|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999987653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=6.2e-20  Score=195.86  Aligned_cols=152  Identities=26%  Similarity=0.315  Sum_probs=122.6

Q ss_pred             CcccC-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCc-------HHHHHHHHhCCCCCCcCC
Q psy8454         514 TTQSM-DDRGFTVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGH-------QNVLLLLLHSGASINLTD  585 (936)
Q Consensus       514 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-------~~iv~~Ll~~g~~~~~~d  585 (936)
                      .++.. |..|.||||+||..|+.++|++|+++|++++.+|..|+||||.||..++       .+++++|.+   .+...|
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d  174 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILED  174 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEEC
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcc
Confidence            44544 7899999999999999999999999999999999999999999998765       245555543   456778


Q ss_pred             CCCCcHHHHHHHcCc----HHHH--------HHHHhcccccc-------------------------------cccCccc
Q psy8454         586 NEGNTALHLATNNGH----ETCV--------KALIYFNEQEV-------------------------------LNLNINA  622 (936)
Q Consensus       586 ~~g~t~L~~A~~~g~----~eiv--------~~Ll~~~~~~~-------------------------------~~~~~~~  622 (936)
                      ..|+||||.|+..+.    ..++        .+++..+....                               ....+|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            899999998886443    3333        33443332110                               0112688


Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCcccCCCChhhhhh
Q psy8454         623 VNNQGDSPLHAAARWGYTSIIQLLLDHGANPTLENKRKVTPLQNAN  668 (936)
Q Consensus       623 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~  668 (936)
                      +|.+|.||||+|++.|+.++|++|+++|++++.+|..|.|||++|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            8999999999999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-20  Score=171.98  Aligned_cols=120  Identities=23%  Similarity=0.311  Sum_probs=109.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHH
Q psy8454         524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC  603 (936)
Q Consensus       524 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ei  603 (936)
                      ++|+.|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccccccCcccccC-CCChHHHHH--HHhCCHHHHHHHHHC
Q psy8454         604 VKALIYFNEQEVLNLNINAVNN-QGDSPLHAA--ARWGYTSIIQLLLDH  649 (936)
Q Consensus       604 v~~Ll~~~~~~~~~~~~~~~~~-~g~t~L~~A--~~~g~~~iv~~Ll~~  649 (936)
                      |++|+++|      ++++..+. .+.||+..+  ++.|+.+++++|++.
T Consensus        83 v~~Ll~~g------a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESG------AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTT------CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcC------CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999876      56676654 477876655  577899999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.1e-20  Score=170.63  Aligned_cols=105  Identities=32%  Similarity=0.389  Sum_probs=66.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHH
Q psy8454         524 TVLHVAALYGRIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETC  603 (936)
Q Consensus       524 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ei  603 (936)
                      |||++|++.|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.+|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcccccccccCcccccCCCChHHHHH
Q psy8454         604 VKALIYFNEQEVLNLNINAVNNQGDSPLHAA  634 (936)
Q Consensus       604 v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  634 (936)
                      +++|+++|      ++++.+|..|.|||++|
T Consensus        84 v~~Ll~~G------ad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSKG------ADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTC------CCSSSSSSSTCCCCCTC
T ss_pred             hhhhhccc------ccceeeCCCCCCHHHHH
Confidence            66666543      34555555555555554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.3e-19  Score=167.52  Aligned_cols=129  Identities=23%  Similarity=0.296  Sum_probs=113.9

Q ss_pred             hHHHHHHHHCCCHHHHHHHHHhcccCccCCCCCcccccccCCchhhHHHhhhccCCCCcccCCCCCCcHHHHHHHc---C
Q psy8454         457 LTKLFEFARLGDGDKVRAILQEENKKEDSESLPLCHPLCSCDDCEEAINLKHSQSKPTTQSMDDRGFTVLHVAALY---G  533 (936)
Q Consensus       457 ~~~L~~A~~~G~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g  533 (936)
                      ...|+.|++++|+..|..++..+.+....                           ......+..|.||||+|++.   |
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~---------------------------~~~~~~~~~g~t~Lh~A~~~~~~~   59 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEK---------------------------IPLANGHEPDETALHLAVRSVDRT   59 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSB---------------------------CCCSSCSSTTCBHHHHHHHHCCTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCC---------------------------CCcccCCCCCCchHHHHHHhcCCC
Confidence            34789999999999999999988764321                           01222466799999999975   6


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCcHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhccc
Q psy8454         534 RIKVVDLVLELGADTNSQDLCGCSPLHYAATRGHQNVLLLLLHSGASINLTDNEGNTALHLATNNGHETCVKALIYFNE  612 (936)
Q Consensus       534 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~  612 (936)
                      +.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.++
T Consensus        60 ~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          60 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             THHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999998664