Psyllid ID: psy8459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHccccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHcccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHcccc
Coil and Loop (DISEMBL)
kqltnlkhvdlfnndvTTIENYREKVFELLpnlkyldgfdaknneapdseddeesegddyegedeeleeeeddgldeedgedeeedtegkevrgkkrkhdeeeege
Flexible Loop (DISEMBL)
kqltnlkhvdlfnndvttiENYREKVFELLPNLKYLDGFDAKNneapdseddeesegddyegedeeleeeeddgldeedgedeeedtegkevrgkkrkhdeeeege
Low Complexity Region (SEG)
KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPdseddeesegddyegedeeleeeeddgldeedgedeeedtegKEVRGKKRKHDEEEEGE
Disordered region (IsUnstruct)
*****LKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF*******************************************************************
Disordered Region (DISOPRED)
****NLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAK****************************************************************
Disordered Region (DISEMBL)
KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNN**************************************************************
Disordered Region (DISPRO)
**L*NLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAK****************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSxxxxxxxxxxxxxxxxxxxxxEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q6NUW5	250	Acidic leucine-rich nucle	yes	N/A	0.443	0.188	0.680	3e-13
Q5ZMN0	262	Acidic leucine-rich nucle	yes	N/A	0.528	0.213	0.620	2e-12
Q8AVC1	239	Acidic leucine-rich nucle	N/A	N/A	0.509	0.225	0.592	9e-12
Q6P1U7	242	Acidic leucine-rich nucle	yes	N/A	0.509	0.223	0.592	1e-11
P49911	247	Acidic leucine-rich nucle	yes	N/A	0.462	0.198	0.612	1e-10
Q8HY67	249	Acidic leucine-rich nucle	yes	N/A	0.537	0.228	0.561	1e-10
P39687	249	Acidic leucine-rich nucle	yes	N/A	0.537	0.228	0.561	1e-10
P51122	249	Acidic leucine-rich nucle	yes	N/A	0.537	0.228	0.561	2e-10
O35381	247	Acidic leucine-rich nucle	yes	N/A	0.462	0.198	0.612	2e-10
Q7ZUP0	254	Acidic leucine-rich nucle	no	N/A	0.537	0.224	0.543	2e-10

>sp|Q6NUW5|AN32E_DANRE Acidic leucine-rich nuclear phosphoprotein 32 family member E OS=Danio rerio GN=anp32e PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49
           L NLK +DLFN ++TT+E+YRE +FELLP + YLDGFDA++NEAPDS
Sbjct: 112 LKNLKSLDLFNCEITTLEDYRESIFELLPQVTYLDGFDAEDNEAPDS 158

Inhibits activity of protein phosphatase 2A (PP2A). Does not inhibit protein phosphatase 1. May play a role in cerebellar development and synaptogenesis process by modulating PP2A activity.
Danio rerio (taxid: 7955)

>sp|Q5ZMN0|AN32B_CHICK Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Gallus gallus GN=ANP32B PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGD 58
           K+L NL  +DLFN +VT + NYRE VF LLP L YLDGFDA   EAPDS  D E++GD
Sbjct: 110 KKLPNLHSLDLFNCEVTMLINYRESVFTLLPQLTYLDGFDADEQEAPDS--DPEADGD 165

Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity. Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome.

Gallus gallus (taxid: 9031)

>sp|Q8AVC1|AN32B_XENLA Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Xenopus laevis GN=anp32b PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEE 54
           K+L +L  +DLFN +VT + NYRE VFELLP L +LDGFDA + EAPDS+ + E
Sbjct: 110 KKLPHLMSLDLFNCEVTMLNNYRESVFELLPKLTFLDGFDADDQEAPDSDPEAE 163

Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity. Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome.

Xenopus laevis (taxid: 8355)

>sp|Q6P1U7|AN32B_XENTR Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Xenopus tropicalis GN=anp32b PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEE 54
           K+L +L  +DLFN +VT + NYRE VFELLP L +LDGFDA + EAPDS+ + E
Sbjct: 110 KKLPHLMSLDLFNCEVTMLNNYRESVFELLPQLTFLDGFDADDQEAPDSDPEAE 163

Multifunctional protein working as a cell cycle progression factor as well as a cell survival factor. Required for the progression from the G1 to the S phase. Anti-apoptotic protein which functions as a caspase-3 inhibitor. Has no phosphatase 2A (PP2A) inhibitor activity. Exhibits histone chaperone properties, stimulating core histones to assemble into a nucleosome.

Xenopus tropicalis (taxid: 8364)

>sp|P49911|AN32A_RAT Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Rattus norvegicus GN=Anp32a PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 37/49 (75%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49
           K+L NLK +DLFN +VT +  YRE VF+LLP + YLDG+D  N EAPDS
Sbjct: 110 KKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGYDRDNKEAPDS 158

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Rattus norvegicus (taxid: 10116)

>sp|Q8HY67|AN32A_CANFA Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Canis familiaris GN=ANP32A PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEG 57
           K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D  + EAPDS+ +   EG
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPDSDAEGYVEG 166

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Canis familiaris (taxid: 9615)

>sp|P39687|AN32A_HUMAN Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Homo sapiens GN=ANP32A PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEG 57
           K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D  + EAPDS+ +   EG
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPDSDAEGYVEG 166

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Homo sapiens (taxid: 9606)

>sp|P51122|AN32A_BOVIN Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Bos taurus GN=ANP32A PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 42/57 (73%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEG 57
           K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D  + EAPDS+ +   EG
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPDSDAEGYVEG 166

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Bos taurus (taxid: 9913)

>sp|O35381|AN32A_MOUSE Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Mus musculus GN=Anp32a PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 37/49 (75%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49
           K+L NLK +DLFN +VT +  YRE VF+LLP + YLDG+D  N EAPDS
Sbjct: 110 KKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGYDRDNKEAPDS 158

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability in association with ELAVL1, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex. Plays a role in E4F1-mediated transcriptional repression.

Mus musculus (taxid: 10090)

>sp|Q7ZUP0|AN32A_DANRE Acidic leucine-rich nuclear phosphoprotein 32 family member A OS=Danio rerio GN=anp32a PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEG 57
           K+L +LK +DLFN +VT + +YRE VF+LLP L YLDG+D ++ EAPDS+ +   EG
Sbjct: 110 KKLESLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDKEDKEAPDSDAEAYVEG 166

Implicated in a number of cellular processes, including proliferation, differentiation, caspase-dependent and caspase-independent apoptosis, suppression of transformation (tumor suppressor), inhibition of protein phosphatase 2A, regulation of mRNA trafficking and stability, and inhibition of acetyltransferases as part of the INHAT (inhibitor of histone acetyltransferases) complex.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
395513432	379	PREDICTED: uncharacterized protein LOC10	0.556	0.155	0.593	5e-12
449266677	235	Acidic leucine-rich nuclear phosphoprote	0.575	0.259	0.587	8e-12
157120718	268	microtubule binding protein, putative [A	0.537	0.212	0.614	1e-11
55741912	250	acidic leucine-rich nuclear phosphoprote	0.443	0.188	0.680	1e-11
33518715	243	mapmodulin-like protein [Rhodnius prolix	0.584	0.255	0.590	2e-11
91077016	238	PREDICTED: similar to mapmodulin-like pr	0.547	0.243	0.568	3e-11
270002990	231	hypothetical protein TcasGA2_TC030635 [T	0.547	0.251	0.568	4e-11
223648810	252	Acidic leucine-rich nuclear phosphoprote	0.603	0.253	0.553	4e-11
345327778	297	PREDICTED: acidic leucine-rich nuclear p	0.556	0.198	0.576	4e-11
221219874	198	Acidic leucine-rich nuclear phosphoprote	0.584	0.313	0.545	5e-11

>gi|395513432|ref|XP_003760928.1| PREDICTED: uncharacterized protein LOC100920101 [Sarcophilus harrisii]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDD 59
           K+L NLK +DLF  DVT + +YRE VF LLP L YLDG+DA + EAPDSE + + EG D
Sbjct: 214 KKLPNLKSLDLFKCDVTMLMSYRESVFALLPQLTYLDGYDADDKEAPDSEPEADREGLD 272

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449266677|gb|EMC77701.1| Acidic leucine-rich nuclear phosphoprotein 32 family member B, partial [Columba livia]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEG--D 58
           K+L NL+ +DLFN +VT + NYRE VF LLP L YLDGFDA + EAPDS+ + + +G  D
Sbjct: 93  KKLPNLRSLDLFNCEVTMLINYRESVFTLLPQLTYLDGFDADDQEAPDSDPEADGDGLED 152

Query: 59  DYE 61
           DYE
Sbjct: 153 DYE 155

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157120718|ref|XP_001659738.1| microtubule binding protein, putative [Aedes aegypti] gi|108883027|gb|EAT47252.1| AAEL001605-PA [Aedes aegypti]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEG 57
           K+L NL+ +DLFNN+VT  +NYR+K+FEL+P+LKYLDGFD ++ EAP  EDDE + G
Sbjct: 105 KELENLEVLDLFNNEVTMTQNYRDKIFELIPSLKYLDGFDREDAEAPSDEDDEANGG 161

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|55741912|ref|NP_998442.1| acidic leucine-rich nuclear phosphoprotein 32 family member E [Danio rerio] gi|82237209|sp|Q6NUW5.1|AN32E_DANRE RecName: Full=Acidic leucine-rich nuclear phosphoprotein 32 family member E gi|33991732|gb|AAH56543.1| Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Danio rerio] gi|46250384|gb|AAH68403.1| Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Danio rerio] gi|68534775|gb|AAH98881.1| Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Danio rerio]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS 49
           L NLK +DLFN ++TT+E+YRE +FELLP + YLDGFDA++NEAPDS
Sbjct: 112 LKNLKSLDLFNCEITTLEDYRESIFELLPQVTYLDGFDAEDNEAPDS 158

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|33518715|gb|AAQ20840.1| mapmodulin-like protein [Rhodnius prolixus]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 4/66 (6%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDDY 60
           K+  +LK +DLFNN+VT I+NYREK+F+LLP+LKYLDGFD K  EA    DD E E D  
Sbjct: 105 KEFEHLKSLDLFNNEVTVIDNYREKLFKLLPSLKYLDGFDVKEQEA----DDSEQEVDSV 160

Query: 61  EGEDEE 66
            G +EE
Sbjct: 161 NGNEEE 166

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077016|ref|XP_966530.1| PREDICTED: similar to mapmodulin-like protein [Tribolium castaneum]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 49/58 (84%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGD 58
           K   +LK++DLFNN+ TT+ENYREK+F+++P+LKYLDGFDA++ EA D++ +EE  G+
Sbjct: 105 KNFKHLKNLDLFNNEATTVENYREKIFKMIPSLKYLDGFDAEDREADDTDGEEEVNGN 162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002990|gb|EEZ99437.1| hypothetical protein TcasGA2_TC030635 [Tribolium castaneum]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 49/58 (84%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGD 58
           K   +LK++DLFNN+ TT+ENYREK+F+++P+LKYLDGFDA++ EA D++ +EE  G+
Sbjct: 105 KNFKHLKNLDLFNNEATTVENYREKIFKMIPSLKYLDGFDAEDREADDTDGEEEVNGN 162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|223648810|gb|ACN11163.1| Acidic leucine-rich nuclear phosphoprotein 32 family member E [Salmo salar]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 52/65 (80%), Gaps = 1/65 (1%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSE-DDEESEGDD 59
           K L NLK +DL++ ++TT+E+YRE VFELLP + +LDG+D ++NE PDSE DD+++EG D
Sbjct: 110 KNLKNLKSLDLYSCEITTLEDYRESVFELLPQVTFLDGYDHEDNEVPDSEADDDDNEGLD 169

Query: 60  YEGED 64
            E +D
Sbjct: 170 SEADD 174

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345327778|ref|XP_001513221.2| PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Ornithorhynchus anatinus]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDD 59
           K+L NL+ +DLFN +VT + NYRE +F LLP L YLDGFDA + EAPDS+ + + EG D
Sbjct: 144 KKLPNLRSLDLFNCEVTMLINYRESMFGLLPQLTYLDGFDADDQEAPDSDPEVDGEGLD 202

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221219874|gb|ACM08598.1| Acidic leucine-rich nuclear phosphoprotein 32 family member E [Salmo salar]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 50/66 (75%), Gaps = 4/66 (6%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEESEGDDY 60
           K L NLK +DL++ ++TT+E+YRE VFELLP + +LDG+D ++NE PDSE D+    DD+
Sbjct: 110 KNLKNLKSLDLYSCEITTLEDYRESVFELLPQVTFLDGYDHEDNEVPDSEADD----DDH 165

Query: 61  EGEDEE 66
           EG D E
Sbjct: 166 EGLDSE 171

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
ZFIN|ZDB-GENE-040426-2448	250	anp32e "acidic (leucine-rich)	0.443	0.188	0.638	1.8e-17
UNIPROTKB|Q5TB20	220	ANP32E "Acidic (Leucine-rich)	0.443	0.213	0.574	2.8e-15
UNIPROTKB|F1PQ43	231	ANP32A "Acidic leucine-rich nu	0.443	0.203	0.595	3.5e-15
UNIPROTKB|P51122	249	ANP32A "Acidic leucine-rich nu	0.443	0.188	0.595	6.4e-15
UNIPROTKB|P39687	249	ANP32A "Acidic leucine-rich nu	0.443	0.188	0.595	6.4e-15
MGI|MGI:1913721	260	Anp32e "acidic (leucine-rich)	0.443	0.180	0.574	6.7e-15
RGD|1310611	258	Anp32e "acidic (leucine-rich)	0.443	0.182	0.574	7.8e-15
UNIPROTKB|Q5XIE0	258	Anp32e "Acidic leucine-rich nu	0.443	0.182	0.574	7.8e-15
UNIPROTKB|Q9BTT0	268	ANP32E "Acidic leucine-rich nu	0.443	0.175	0.574	8.8e-15
UNIPROTKB|Q5F4A3	256	ANP32E "Acidic leucine-rich nu	0.443	0.183	0.531	9.8e-15

ZFIN|ZDB-GENE-040426-2448 anp32e "acidic (leucine-rich) nuclear phosphoprotein 32 family, member E" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++TT+E+YRE +FELLP + YLDGFDA++NEAP
Sbjct:   110 QNLKNLKSLDLFNCEITTLEDYRESIFELLPQVTYLDGFDAEDNEAP 156

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5TB20 ANP32E "Acidic (Leucine-rich) nuclear phosphoprotein 32 family, member E, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++T +E+YRE +FELL  + YLDGFD ++NEAP
Sbjct:    62 QNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAP 108

GO:0005634 "nucleus" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0019212 "phosphatase inhibitor activity" evidence=IEA

UNIPROTKB|F1PQ43 ANP32A "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D  + EAP
Sbjct:    92 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAP 138

GO:0016363 "nuclear matrix" evidence=IEA

UNIPROTKB|P51122 ANP32A "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D  + EAP
Sbjct:   110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAP 156

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0016363 "nuclear matrix" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P39687 ANP32A "Acidic leucine-rich nuclear phosphoprotein 32 family member A" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D  + EAP
Sbjct:   110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAP 156

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1913721 Anp32e "acidic (leucine-rich) nuclear phosphoprotein 32 family, member E" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++T +E+YRE +FELL  + YLDGFD ++NEAP
Sbjct:   110 QNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAP 156

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0019212 "phosphatase inhibitor activity" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

RGD|1310611 Anp32e "acidic (leucine-rich) nuclear phosphoprotein 32 family, member E" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++T +E+YRE +FELL  + YLDGFD ++NEAP
Sbjct:   110 QNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAP 156

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

GO:0019212 "phosphatase inhibitor activity" evidence=IEA;ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

UNIPROTKB|Q5XIE0 Anp32e "Acidic leucine-rich nuclear phosphoprotein 32 family member E" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++T +E+YRE +FELL  + YLDGFD ++NEAP
Sbjct:   110 QNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAP 156

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0019212 "phosphatase inhibitor activity" evidence=IEA

UNIPROTKB|Q9BTT0 ANP32E "Acidic leucine-rich nuclear phosphoprotein 32 family member E" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++T +E+YRE +FELL  + YLDGFD ++NEAP
Sbjct:   110 QNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAP 156

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0019212 "phosphatase inhibitor activity" evidence=ISS

UNIPROTKB|Q5F4A3 ANP32E "Acidic leucine-rich nuclear phosphoprotein 32 family member E" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
 Identities = 25/47 (53%), Positives = 37/47 (78%)

Query:     1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
             + L NLK +DLFN ++T +E+YR+ +F+LL  + YLDGFD ++NEAP
Sbjct:   110 QNLKNLKSLDLFNCEITNLEDYRDSIFDLLQQITYLDGFDQEDNEAP 156

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0019212 "phosphatase inhibitor activity" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8HY67	AN32A_CANFA	No assigned EC number	0.5614	0.5377	0.2289	yes	N/A
Q6P1U7	AN32B_XENTR	No assigned EC number	0.5925	0.5094	0.2231	yes	N/A
P51122	AN32A_BOVIN	No assigned EC number	0.5614	0.5377	0.2289	yes	N/A
Q28XE2	AN32A_DROPS	No assigned EC number	0.5344	0.5377	0.2167	yes	N/A
O35381	AN32A_MOUSE	No assigned EC number	0.6122	0.4622	0.1983	yes	N/A
Q9V895	AN32A_DROME	No assigned EC number	0.5357	0.5188	0.2107	yes	N/A
Q6NUW5	AN32E_DANRE	No assigned EC number	0.6808	0.4433	0.188	yes	N/A
Q5ZMN0	AN32B_CHICK	No assigned EC number	0.6206	0.5283	0.2137	yes	N/A
P39687	AN32A_HUMAN	No assigned EC number	0.5614	0.5377	0.2289	yes	N/A
P49911	AN32A_RAT	No assigned EC number	0.6122	0.4622	0.1983	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	4e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	5e-05
smart00446	19	smart00446, LRRcap, occurring C-terminal to leucin	6e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	2e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	8e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.003

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 43  NNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDT-EGKEVRGK 95
            NE  D +D+EE      E +D+E +  + D  DEE+ + E E T   KEV  K
Sbjct: 219 QNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEK 272

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 40  DAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTE 88
           +AK +E    +    S+G D E E+EE EEEE++  +EE+ E+EEE+ E
Sbjct: 844 EAKQDEK-GVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|197729 smart00446, LRRcap, occurring C-terminal to leucine-rich repeats

 Score = 36.9 bits (87), Expect = 6e-05
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 20 ENYREKVFELLPNLKYLD 37
           +YREKV ELLP L+ LD
Sbjct: 2  AHYREKVIELLPQLRKLD 19

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins. Length = 19

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 45  EAPDSED--DEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKE 91
           EA   E   D     D  + E+EE EEEE++  +EE+ E+EEE+ E +E
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 40  DAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKH 99
           DA  +   D +DDEES+ +D E    E +E++DD  D++D    E   E +  R +  + 
Sbjct: 118 DAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEK 177

Query: 100 DEE 102
             E
Sbjct: 178 RAE 180

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 48  DSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEEEGE 106
             ED    +    + +DE+ +E++DD  D+E+ E+EEE+ +G +        DE+EE E
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFD--------DEDEEDE 191

Length = 2849

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 44  NEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGKKRKHDEEE 103
           +E  + E + E++G+  + E         DG D E+ E+EEE+ E +E   ++ + +EEE
Sbjct: 830 DETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889

Query: 104 EGE 106
             E
Sbjct: 890 NEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 17/71 (23%), Positives = 37/71 (52%)

Query: 36  LDGFDAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEVRGK 95
           L      ++   D E+D++ + +  E ++E  + E+D+  D++D +D+    E    R +
Sbjct: 110 LQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRR 169

Query: 96  KRKHDEEEEGE 106
           +R+  EE+  E
Sbjct: 170 RRREWEEKRAE 180

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 51  DDEESEGDDYEGEDEELEEEEDDGLDE-----EDGEDEEEDTEGKEVRGKKRKH 99
           +D  +E DD E EDEE EEEED+         +D E EE+D E K         
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSS 435

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 35  YLDGFDAKNNEAPDSEDDEESE--GDDYEGEDEELEEEEDDGLDEEDGEDEEEDTEGKEV 92
            L   +    E  D  DDE+ E   DD E E+E+++  +++  +E++  D+E+D E +E 
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374

Query: 93  RGKKRKHDEEEE 104
             +K+K    E 
Sbjct: 375 EKEKKKKKSAES 386

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 38  GFDAKNNEAPDSEDDEESEGDDYEGEDEELEEEEDDGLDEEDGE--DEEEDTEGKEVRGK 95
           G + +  E    +D++E + DD   E+EE  +  D+  DEED +  DE+++ E +E + K
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Query: 96  KRKHDEEEEGE 106
           K+K   E    
Sbjct: 379 KKKKSAESTRS 389

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.38
KOG2739|consensus	260		99.09
KOG1644|consensus	233		99.03
KOG2123|consensus	388		98.45
smart00446	26	LRRcap occurring C-terminal to leucine-rich repeat	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.28
KOG3763|consensus	585		95.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.42
KOG2739|consensus	260		94.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.08
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.96
KOG1259|consensus	490		93.68
smart00370	26	LRR Leucine-rich repeats, outliers.	93.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.54
KOG2982|consensus	418		93.16
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	92.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	92.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	90.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.1
KOG4237|consensus	498		88.98
KOG4579|consensus	177		88.1
KOG1859|consensus	1096		88.08
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.92
KOG1644|consensus	233		87.83
KOG0531|consensus	414		87.19
KOG3864|consensus	221		86.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	85.97
KOG3665|consensus	699		83.2
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.16
PLN03150	623	hypothetical protein; Provisional	82.09
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	81.32
PLN03150	623	hypothetical protein; Provisional	81.2
KOG3207|consensus	505		80.66
KOG3207|consensus	505		80.36

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.38  E-value=2.2e-13  Score=101.91  Aligned_cols=48  Identities=38%  Similarity=0.501  Sum_probs=35.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDS   49 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~ds   49 (106)
                      .||+|++|+|.|||||..++||.+||++||+|++|||++|+..||..+
T Consensus       111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A  158 (175)
T PF14580_consen  111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEA  158 (175)
T ss_dssp             G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B----
T ss_pred             cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccc
Confidence            689999999999999999999999999999999999999999999654

>KOG2739|consensus

Probab=99.09  E-value=4.3e-11  Score=95.30  Aligned_cols=54  Identities=56%  Similarity=0.994  Sum_probs=50.5

Q ss_pred             CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCCCCCCccc
Q psy8459           1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDDEE   54 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~dsd~e~e   54 (106)
                      +.|+||++|.|++|++++...||.+||.+||||+|||+++|.++|++.+++++.
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~~e~~  166 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEADAEDD  166 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccccccccc
Confidence            467899999999999999999999999999999999999999999999888764

>KOG1644|consensus

Probab=99.03  E-value=1.6e-11  Score=96.13  Aligned_cols=47  Identities=30%  Similarity=0.357  Sum_probs=45.0

Q ss_pred             CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCC
Q psy8459           1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP   47 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~   47 (106)
                      ++||+|++|+|.+||||..++||.||+++||+|++|||..|+.+||.
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~  156 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKERE  156 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHH
Confidence            47999999999999999999999999999999999999999999884

>KOG2123|consensus

Probab=98.45  E-value=4.7e-08  Score=80.55  Aligned_cols=46  Identities=39%  Similarity=0.522  Sum_probs=42.7

Q ss_pred             CCCCCCceEeCCCCCCCC--hhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459           1 KQLTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLDGFDAKNNEA   46 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~--~~~YR~~V~~~LPqLkyLDg~~v~~~E~   46 (106)
                      ++||+|++|+|..||||-  -.+||..|+.+||+|+.||.+.|+..|.
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEl  132 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEEL  132 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHH
Confidence            579999999999999987  5889999999999999999999998765

>smart00446 LRRcap occurring C-terminal to leucine-rich repeats

Probab=98.12  E-value=1.7e-06  Score=47.42  Aligned_cols=22  Identities=50%  Similarity=0.822  Sum_probs=19.7

Q ss_pred             hhhHHHHHHHCCCCceecCccC
Q psy8459          20 ENYREKVFELLPNLKYLDGFDA   41 (106)
Q Consensus        20 ~~YR~~V~~~LPqLkyLDg~~v   41 (106)
                      ++||.+||.+||||++||....
T Consensus         2 ~~YR~~Vi~~LPqL~~LD~~~~   23 (26)
T smart00446        2 AHYREKVIRLLPQLRKLDXXXX   23 (26)
T ss_pred             ccHHHHHHHHCCccceeccccc
Confidence            5899999999999999998644

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.08  E-value=0.00044  Score=40.93  Aligned_cols=32  Identities=38%  Similarity=0.498  Sum_probs=26.0

Q ss_pred             CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++|++|+|.+|.|+..+.    .|..||+|++|+..
T Consensus         1 ~~L~~L~l~~N~i~~l~~----~l~~l~~L~~L~l~   32 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP----ELSNLPNLETLNLS   32 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG----HGTTCTTSSEEEET
T ss_pred             CcceEEEccCCCCcccCc----hHhCCCCCCEEEec
Confidence            689999999999999865    58899999998753

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.28  E-value=0.00055  Score=41.60  Aligned_cols=35  Identities=49%  Similarity=0.720  Sum_probs=26.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.|...+.   .+|..||+|++|+..
T Consensus        23 ~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~   57 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLS   57 (61)
T ss_dssp             TGTTESEEEETSSSESEEET---TTTTTSTTESEEEET
T ss_pred             CCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCc
Confidence            57888888888888876533   368888888888653

...

>KOG3763|consensus

Probab=95.93  E-value=0.0046  Score=54.35  Aligned_cols=42  Identities=29%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             CCCCceEeCCCCCCCChhhhH----HHHHHHCCCCceecCccCCCC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYR----EKVFELLPNLKYLDGFDAKNN   44 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR----~~V~~~LPqLkyLDg~~v~~~   44 (106)
                      ...|+.|.|.|||||..-.+|    ..|...+|+|..|||..|...
T Consensus       269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~  314 (585)
T KOG3763|consen  269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQPE  314 (585)
T ss_pred             CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCcc
Confidence            457888999999999863333    366779999999999888763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.42  E-value=0.012  Score=34.63  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             CCCCCCceEeCCCCCCCChhhh
Q psy8459           1 KQLTNLKHVDLFNNDVTTIENY   22 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~~~Y   22 (106)
                      ++|++|+.|+|++|+|+..+.+
T Consensus        21 ~~l~~L~~L~l~~N~i~~i~~l   42 (44)
T PF12799_consen   21 SNLPNLETLNLSNNPISDISPL   42 (44)
T ss_dssp             TTCTTSSEEEETSSCCSBEGGG
T ss_pred             hCCCCCCEEEecCCCCCCCcCC
Confidence            4799999999999999986543

...

>KOG2739|consensus

Probab=94.37  E-value=0.024  Score=45.59  Aligned_cols=41  Identities=32%  Similarity=0.442  Sum_probs=35.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNN   44 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~   44 (106)
                      ++|+|++|+|++|.|....+.|  -++.|++|+.||.+.....
T Consensus        89 ~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hCCceeEEeecCCccccccccc--hhhhhcchhhhhcccCCcc
Confidence            4699999999999999877777  7899999999999776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.08  E-value=0.0067  Score=36.74  Aligned_cols=34  Identities=44%  Similarity=0.569  Sum_probs=28.7

Q ss_pred             CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      |+|++|.|.+|.++..+   ..+|..+|+|++|+...
T Consensus         1 p~L~~L~l~~n~l~~i~---~~~f~~l~~L~~L~l~~   34 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIP---PDSFSNLPNLETLDLSN   34 (61)
T ss_dssp             TTESEEEETSSTESEEC---TTTTTTGTTESEEEETS
T ss_pred             CcCcEEECCCCCCCccC---HHHHcCCCCCCEeEccC
Confidence            68999999999998874   34788999999998653

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.96  E-value=0.033  Score=27.03  Aligned_cols=17  Identities=41%  Similarity=0.655  Sum_probs=11.3

Q ss_pred             CCCceEeCCCCCCCChh
Q psy8459           4 TNLKHVDLFNNDVTTIE   20 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~   20 (106)
                      ++|+.|+|++|.++..|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            58999999999987654

...

>KOG1259|consensus

Probab=93.68  E-value=0.026  Score=47.81  Aligned_cols=44  Identities=25%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCC---CCceecCccCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLP---NLKYLDGFDAKNNE   45 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LP---qLkyLDg~~v~~~E   45 (106)
                      +||.|.+|.|.+||++..+.||.+|++.+-   +=-.||+..-+.+|
T Consensus       397 ~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~~~E  443 (490)
T KOG1259|consen  397 NLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGNQQE  443 (490)
T ss_pred             cccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcchhh
Confidence            689999999999999999999999999875   34467776665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.54  E-value=0.062  Score=27.76  Aligned_cols=19  Identities=37%  Similarity=0.656  Sum_probs=16.8

Q ss_pred             CCCCceEeCCCCCCCChhh
Q psy8459           3 LTNLKHVDLFNNDVTTIEN   21 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~   21 (106)
                      |++|++|+|.+|.|+..+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            6899999999999998754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.54  E-value=0.062  Score=27.76  Aligned_cols=19  Identities=37%  Similarity=0.656  Sum_probs=16.8

Q ss_pred             CCCCceEeCCCCCCCChhh
Q psy8459           3 LTNLKHVDLFNNDVTTIEN   21 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~   21 (106)
                      |++|++|+|.+|.|+..+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            6899999999999998754

>KOG2982|consensus

Probab=93.16  E-value=0.014  Score=49.03  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=41.9

Q ss_pred             CCCCCCceEeCCCCCCCCh---hhhHHHHHHHCCCCceecCccCCCCCCCCC
Q psy8459           1 KQLTNLKHVDLFNNDVTTI---ENYREKVFELLPNLKYLDGFDAKNNEAPDS   49 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~---~~YR~~V~~~LPqLkyLDg~~v~~~E~~ds   49 (106)
                      ++|++|..|.+..||+...   ..-|+-+|+.||++++|.|..|...+|.+|
T Consensus       246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dS  297 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDS  297 (418)
T ss_pred             cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhh
Confidence            4789999999999999762   223777899999999999999999988775

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=92.69  E-value=0.087  Score=28.47  Aligned_cols=19  Identities=53%  Similarity=0.760  Sum_probs=16.6

Q ss_pred             CCCCceEeCCCCCCCChhh
Q psy8459           3 LTNLKHVDLFNNDVTTIEN   21 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~   21 (106)
                      |++|+.|+|..|.|+..++
T Consensus         1 L~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        1 LTNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CCccCEEECCCCccceecC
Confidence            6899999999999987655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=92.03  E-value=0.063  Score=40.22  Aligned_cols=17  Identities=47%  Similarity=0.714  Sum_probs=4.1

Q ss_pred             CCCCceEeCCCCCCCCh
Q psy8459           3 LTNLKHVDLFNNDVTTI   19 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~   19 (106)
                      |++|++|.|.+|.|+..
T Consensus        63 L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen   63 LPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             -TT--EEE--SS---S-
T ss_pred             hhhhhhcccCCCCCCcc
Confidence            44555555555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.58  E-value=0.079  Score=26.98  Aligned_cols=16  Identities=44%  Similarity=0.576  Sum_probs=11.7

Q ss_pred             CCCCceEeCCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~   18 (106)
                      +++|++|+|++|+|+.
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            5899999999999865

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=90.70  E-value=0.3  Score=36.85  Aligned_cols=35  Identities=29%  Similarity=0.297  Sum_probs=15.9

Q ss_pred             CCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecC
Q psy8459           4 TNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++|++|+|.+|.++.. ..+-...+..+|+|++|+.
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l  228 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL  228 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence            3555555555555432 2223334444455555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.10  E-value=0.095  Score=26.54  Aligned_cols=17  Identities=41%  Similarity=0.610  Sum_probs=14.3

Q ss_pred             CCceEeCCCCCCCChhh
Q psy8459           5 NLKHVDLFNNDVTTIEN   21 (106)
Q Consensus         5 ~L~~L~L~gNPV~~~~~   21 (106)
                      +|++|+|++|.++..|.
T Consensus         1 ~L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             TESEEEETSSEESEEGT
T ss_pred             CccEEECCCCcCEeCCh
Confidence            68999999999986543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4237|consensus

Probab=88.98  E-value=0.3  Score=42.31  Aligned_cols=40  Identities=40%  Similarity=0.557  Sum_probs=33.2

Q ss_pred             CCCCCCceEeCCCCCCCCh---------------------hhhHHHHHHHCCCCceecCcc
Q psy8459           1 KQLTNLKHVDLFNNDVTTI---------------------ENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~---------------------~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      ++|++|+.|+|++|.|+.+                     ...+.+||.-|.+|+.|+.+.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD  331 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence            5799999999999999875                     455778888899998887654

>KOG4579|consensus

Probab=88.10  E-value=0.13  Score=39.18  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=31.7

Q ss_pred             CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459           1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEA   46 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~   46 (106)
                      +.|+.|++|+|+.||+...+.    ||+.|.+|-|||...-.-.++
T Consensus        97 Aam~aLr~lNl~~N~l~~~p~----vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen   97 AAMPALRSLNLRFNPLNAEPR----VIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             hhhHHhhhcccccCccccchH----HHHHHHhHHHhcCCCCccccC
Confidence            357889999999999988643    777788888888655444444

>KOG1859|consensus

Probab=88.08  E-value=0.13  Score=47.58  Aligned_cols=43  Identities=23%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCC-----CCceecCccCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLP-----NLKYLDGFDAKNNE   45 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LP-----qLkyLDg~~v~~~E   45 (106)
                      |..|+.|+|.|||+|-.+.||..++..+.     .=-.|||+-+.+.+
T Consensus       278 Ls~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~e  325 (1096)
T KOG1859|consen  278 LSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGRE  325 (1096)
T ss_pred             HHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchh
Confidence            34688899999999999999999998865     44478998877754

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.92  E-value=0.44  Score=25.44  Aligned_cols=16  Identities=31%  Similarity=0.457  Sum_probs=14.3

Q ss_pred             CCCceEeCCCCCCCCh
Q psy8459           4 TNLKHVDLFNNDVTTI   19 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~   19 (106)
                      ++|++|+|++|+|...
T Consensus         2 ~~L~~LdL~~N~i~~~   17 (28)
T smart00368        2 PSLRELDLSNNKLGDE   17 (28)
T ss_pred             CccCEEECCCCCCCHH
Confidence            6899999999999764

>KOG1644|consensus

Probab=87.83  E-value=0.28  Score=39.05  Aligned_cols=33  Identities=33%  Similarity=0.522  Sum_probs=18.7

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      +++|++|.|.+|.|+.....-  -++.||+|+||=
T Consensus        87 ~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   87 LPNLKTLILTNNSIQELGDLD--PLASCPKLEYLT  119 (233)
T ss_pred             ccccceEEecCcchhhhhhcc--hhccCCccceee
Confidence            455666666666666544432  355666666653

>KOG0531|consensus

Probab=87.19  E-value=0.17  Score=41.26  Aligned_cols=32  Identities=38%  Similarity=0.440  Sum_probs=24.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      .|+.|+.|+|.+|+|+...+|..     +++|++|+.
T Consensus       138 ~l~~L~~L~l~~N~i~~~~~~~~-----l~~L~~l~l  169 (414)
T KOG0531|consen  138 TLTLLKELNLSGNLISDISGLES-----LKSLKLLDL  169 (414)
T ss_pred             hccchhhheeccCcchhccCCcc-----chhhhcccC
Confidence            46678889999999999888876     555665554

>KOG3864|consensus

Probab=86.68  E-value=0.35  Score=38.23  Aligned_cols=38  Identities=24%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAK   42 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~   42 (106)
                      +++|+.|.|++||.....+  ...+..|++|+.|..+...
T Consensus       150 ~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGG--LACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchheeeccCCCeechhH--HHHHHHhhhhHHHHhcCch
Confidence            5799999999999866544  4578888888888766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=85.97  E-value=0.82  Score=34.44  Aligned_cols=17  Identities=29%  Similarity=0.466  Sum_probs=10.9

Q ss_pred             CCCCCceEeCCCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTT   18 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~   18 (106)
                      ++++|++|+|++|+++.
T Consensus       219 ~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         219 SLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             ccCCCCEEecCCCcCch
Confidence            35666777777766664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665|consensus

Probab=83.20  E-value=0.69  Score=41.49  Aligned_cols=18  Identities=17%  Similarity=0.558  Sum_probs=13.1

Q ss_pred             CCCCCceEeCCCCCCCCh
Q psy8459           2 QLTNLKHVDLFNNDVTTI   19 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~   19 (106)
                      +||||.+|++++.+|+..
T Consensus       171 sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL  188 (699)
T ss_pred             ccCccceeecCCCCccCc
Confidence            577777777777777765

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.16  E-value=0.99  Score=23.37  Aligned_cols=16  Identities=31%  Similarity=0.447  Sum_probs=13.4

Q ss_pred             CCCCceEeCCCCC-CCC
Q psy8459           3 LTNLKHVDLFNND-VTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNP-V~~   18 (106)
                      +++|++|+|.+|+ |++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            6899999999998 444

>PLN03150 hypothetical protein; Provisional

Probab=82.09  E-value=1.4  Score=38.39  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=16.7

Q ss_pred             CCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|+.|+|++|.++. .+.    .|..|++|++|+.
T Consensus       465 l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~L  497 (623)
T PLN03150        465 ITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNL  497 (623)
T ss_pred             CCCCCEEECCCCCCCCCCch----HHhcCCCCCEEEC
Confidence            4455555555555542 222    3556666666664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=81.32  E-value=1.5  Score=38.98  Aligned_cols=34  Identities=26%  Similarity=0.559  Sum_probs=23.8

Q ss_pred             CCCCCceEeCCCCCCC-ChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~-~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++|.++ ..+.   .++..+++|++|+.
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~---~~~~~l~~L~~L~L  125 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPD---DIFTTSSSLRYLNL  125 (968)
T ss_pred             CCCCCCEEECCCCccCCcCCh---HHhccCCCCCEEEC
Confidence            5778888888888876 3433   25667777777775

>PLN03150 hypothetical protein; Provisional

Probab=81.20  E-value=1.5  Score=38.34  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CCCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|++|+|.+|.++. .+.    .|..|++|++||...
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~  475 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSY  475 (623)
T ss_pred             CCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCC
Confidence            57899999999999874 443    478899999998643

>KOG3207|consensus

Probab=80.66  E-value=0.13  Score=44.71  Aligned_cols=48  Identities=19%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             CCCCCceEeCCCCCCCCh------------hhh--------------HHHHHHHCCCCceecCccCCCCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTI------------ENY--------------REKVFELLPNLKYLDGFDAKNNEAPDS   49 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~------------~~Y--------------R~~V~~~LPqLkyLDg~~v~~~E~~ds   49 (106)
                      .|++|++|++.-|+|...            .+|              +.-||+.++||..|....|..++|..+
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~A  372 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDA  372 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhh
Confidence            356777777777777332            112              244899999999999999999998764

>KOG3207|consensus

Probab=80.36  E-value=0.85  Score=39.82  Aligned_cols=37  Identities=30%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +.|++++.|+|+.|-+....--++ |+..||+|+.|.-
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNl  179 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNL  179 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHH-HHHhcccchhccc
Confidence            458899999999999888777665 8888999988864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
2jqd_A	169	Structure Of The Leucine-Rich Repeat Domain Of Lanp		3e-10
2ell_A	168	Solution Structure Of The Leucine Rich Repeat Of Hu		5e-10
2je0_A	149	Crystal Structure Of Pp32 Length = 149		1e-08

>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
           K+L NLK +DLFN +VT +  YRE VF+LLP + YLDG+D  N EAP
Sbjct: 115 KKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGYDRDNKEAP 161

>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family Member B Length = 168

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP 47
           K+L  LK +DLFN +VT + +YRE VF+LLP L YLDG+D ++ EAP
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163

>pdb|2JE0|A Chain A, Crystal Structure Of Pp32 Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40
           K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.9 bits (148), Expect = 3e-13
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSEDD 52
           K+L  LK +DLFN +VT + +YRE VF+LLP L YLDG+D ++ EAPDS+ +
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDAE 168

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 3e-12
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD 40
           K+L NLK +DLFN +VT + +YRE VF+LLP L YLDG+D
Sbjct: 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 8e-10
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNE 45
             L +L ++ +  N VT  ++YR  V   +P ++ LD    K  E
Sbjct: 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 8e-07
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
                L  ++L  N +   E  +E++ E+LP++  + 
Sbjct: 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 5   NLKHVDLFNNDVTTI----ENYREKVFELLPNLKYLDG 38
            L+ + L  N +         Y   + E  P L  LDG
Sbjct: 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             NL+ + L +N + TIE   E  F  L +L++LD
Sbjct: 75  CVNLQALVLTSNGINTIE---EDSFSSLGSLEHLD 106

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L+H+DL  N ++ + +     F+ L +L +L+
Sbjct: 99  LGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLN 130

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 5/35 (14%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           ++ L  ++   N + ++    + +F+ L +L+ + 
Sbjct: 276 ISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + N+ H+ L       +    E   ++  +++ L+
Sbjct: 197 IQNVSHLILHMKQHILLL---EIFVDVTSSVECLE 228

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
           L++L  ++L  N   T+      +F  L  L+ L
Sbjct: 123 LSSLTFLNLLGNPYKTLGETS--LFSHLTKLQIL 154

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           LT L+ +++  +D+ + E    K  + + N+ +L 
Sbjct: 173 LTFLEELEIDASDLQSYE---PKSLKSIQNVSHLI 204

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
          + L  L+++ +  + +  +       F   P L  L+
Sbjct: 53 RGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLN 86

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           +L NL  +DL    +  I       F+    L  L 
Sbjct: 54 SRLINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLV 87

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L++L+ ++L  N+  +++    + F+  P L+ LD
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKT---EAFKECPQLELLD 406

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           K+   L+ +DL    +   +   +  F+ L  LK L+
Sbjct: 397 KECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLN 431

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              LKH+      +++I+            L+ L 
Sbjct: 104 PKALKHLFFIQTGISSIDF---IPLHNQKTLESLY 135

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L  LK ++L ++ +         +F+ LP L++L+
Sbjct: 424 LHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLN 455

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 4  TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           +   + L  N++T +      + + LP L+   
Sbjct: 31 VDTTELVLTGNNLTALP---PGLLDALPALRTAH 61

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L +L+ + +  + +  IE      F+ L +L  ++
Sbjct: 228 QGLMHLQKLWMIQSQIQVIE---RNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L NL  ++LF+N +TTI       F  L  LK L 
Sbjct: 111 LANLNTLELFDNRLTTIP---NGAFVYLSKLKELW 142

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L  ++L +N++T +      +F  L +L+ + 
Sbjct: 254 LQSLVEINLAHNNLTLLP---HDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L+ + L  N + TIE      F  L NL  L+
Sbjct: 87  LRHLEILQLSRNHIRTIE---IGAFNGLANLNTLE 118

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L+ LK + L NN + +I +Y    F  +P+L+ LD
Sbjct: 135 LSKLKELWLRNNPIESIPSY---AFNRIPSLRRLD 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L+ +DL   ++ TIE   +  ++ L +L  L 
Sbjct: 51 FPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLI 82

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L  LK +++ +N + + +    + F  L NL++LD
Sbjct: 123 LKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLD 155

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L++L+ +     ++ ++EN+       L  LK L+
Sbjct: 98  GLSSLQKLVAVETNLASLENF---PIGHLKTLKELN 130

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            LTNL+H+DL +N + +I         +L  +  L+
Sbjct: 147 NLTNLEHLDLSSNKIQSIY---CTDLRVLHQMPLLN 179

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L++L  + L  N + ++       F  L +L+ L 
Sbjct: 74  SLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLV 106

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L  L+ + L+NN +  ++      FE +  L+ L 
Sbjct: 111 LQALEVLLLYNNHIVVVD---RNAFEDMAQLQKLY 142

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
          LTNL  + L +N +  I     + F  +PNL+YLD
Sbjct: 63 LTNLHSLLLSHNHLNFIS---SEAFVPVPNLRYLD 94

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             + NL+++DL +N + T++   E +F  L  L+ L 
Sbjct: 85  VPVPNLRYLDLSSNHLHTLD---EFLFSDLQALEVLL 118

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
          L+ L+ + + +N +  ++     VF+    L+YLD
Sbjct: 44 LSKLRILIISHNRIQYLD---ISVFKFNQELEYLD 75

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             NLKH+DL  N    +     K F  +  LK+L 
Sbjct: 89  TVNLKHLDLSFNAFDALP--ICKEFGNMSQLKFLG 121

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            Q+ +L+ +D+  N V+  E   +       +L  L+
Sbjct: 371 TQMKSLQQLDISQNSVSYDEK--KGDCSWTKSLLSLN 405

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
          +   NL+ + L ++ + TIE      F  L +L++LD
Sbjct: 47 RACANLQVLILKSSRINTIE---GDAFYSLGSLEHLD 80

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              L  + +  N + ++    + +F+ L +L+ + 
Sbjct: 472 FPVLLVMKISRNQLKSVP---DGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L++LK+++L  N   T+      +F  L NL+ L 
Sbjct: 96  PLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L +L+ +DL  N +              P+L+ L 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L NL  +D+  N    + +      +    +++L+
Sbjct: 384 LTLKNLTSLDISRNTFHPMPD----SCQWPEKMRFLN 416

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L +L+H+DL +N ++++       F  L +LKYL+
Sbjct: 71  YSLGSLEHLDLSDNHLSSLS---SSWFGPLSSLKYLN 104

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L  +K + + N+ V  +        + L +L++LD
Sbjct: 308 LLEKVKRITVENSKVFLVPC---SFSQHLKSLEFLD 340

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              +L+ + L  N + +++   E +   L NL  LD
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGE-ILLTLKNLTSLD 393

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L++LK + + N+ V+ IE      F+ L +L  L+
Sbjct: 239 HGLSSLKKLWVMNSQVSLIE---RNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L  ++LF+N +T I       FE L  L+ L 
Sbjct: 122 LASLNTLELFDNWLTVIP---SGAFEYLSKLRELW 153

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L+ + L  N +  IE      F  L +L  L+
Sbjct: 98  LHHLEVLQLGRNSIRQIE---VGAFNGLASLNTLE 129

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L  ++L +N+++++      +F  L  L  L 
Sbjct: 265 LASLVELNLAHNNLSSLP---HDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L+ L+ + L NN + +I +Y    F  +P+L  LD
Sbjct: 146 LSKLRELWLRNNPIESIPSY---AFNRVPSLMRLD 177

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           K L +L  + L NN ++ I    EK F  L  L+ L 
Sbjct: 75  KGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLY 108

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
          K+L  L+ ++  NN +T IE   E  FE    +  + 
Sbjct: 54 KKLPQLRKINFSNNKITDIE---EGAFEGASGVNEIL 87

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + + L  +D+  N ++ +E    ++ + LP LK L+
Sbjct: 46 TRYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLN 79

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            +  NL  +DL +N +++ +         L NL+ L 
Sbjct: 118 VKQKNLITLDLSHNGLSSTKL---GTQVQLENLQELL 151

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L N+  + L  N    +       F L+P+L+ L 
Sbjct: 427 RGLENIFEIYLSYNKYLQLTR---NSFALVPSLQRLM 460

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            TNL  + L +N +  I+N     F    NL  LD
Sbjct: 96  CTNLTELHLMSNSIQKIKN---NPFVKQKNLITLD 127

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
               L+ +DL   ++ TIE   +  ++ L +L  L 
Sbjct: 49 FSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLI 82

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 6/37 (16%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L++L+ +++ +N + ++    + +F+ L +L+ + 
Sbjct: 491 NSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L++L+ +     ++ ++EN+       L  LK L+
Sbjct: 99  LSSLQKLVAVETNLASLENF---PIGHLKTLKELN 130

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L NL ++D+ +       N    +F  L +L+ L 
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L  L+H+D  ++++  +      VF  L NL YLD
Sbjct: 394 GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLD 427

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L  LK +++ +N + + +    + F  L NL++LD
Sbjct: 121 GHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLD 155

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              T+LK++DL  N V T+ +     F  L  L++LD
Sbjct: 370 FGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLD 402

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L++L  + L  N + ++       F  L +L+ L 
Sbjct: 74  SLSHLSTLILTGNPIQSLA---LGAFSGLSSLQKLV 106

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           K LT+L+ + L +N++  I+      F  +     LD
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLD 160

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L  L+ +DL  N +  + +   + F  LPNLK L 
Sbjct: 344 ENLDKLEVLDLSYNHIRALGD---QSFLGLPNLKELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L++L  + L  N    +E      F  L NL+ L 
Sbjct: 77  GLSSLIILKLDYNQFLQLE---TGAFNGLANLEVLT 109

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            LT+L  ++L  N + +I+    ++FE L  L+ LD
Sbjct: 321 GLTHLLKLNLSQNFLGSID---SRMFENLDKLEVLD 353

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              T+L+ + L  N++  I+   +  F  L +L  L+
Sbjct: 296 SHFTDLEQLTLAQNEINKID---DNAFWGLTHLLKLN 329

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L +L  + L  N V  +       F  L  L  L 
Sbjct: 176 LHSLDRLLLHQNRVAHVH---PHAFRDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L  L  + LF N+++ +     +    L  L+YL 
Sbjct: 200 LGRLMTLYLFANNLSALP---TEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            NL  + L +N +  I+      F  L  L+ LD
Sbjct: 55 CRNLTILWLHSNVLARID---AAAFTGLALLEQLD 86

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L NL H+ L  N ++++    E+ F  L +L  L 
Sbjct: 152 LGNLTHLFLHGNRISSVP---ERAFRGLHSLDRLL 183

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 7/35 (20%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L++L+ +++ +N+  +++ +    ++ L +L+ LD
Sbjct: 198 LSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L NL ++D+ +       N    +F  L +L+ L 
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
          LT L  + L +N ++       +      +LKYLD
Sbjct: 51 LTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLD 84

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            T+LK++DL  N V T+ +     F  L  L++LD
Sbjct: 77  TTSLKYLDLSFNGVITMSS----NFLGLEQLEHLD 107

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           K L NL  + L NN ++ I       F  L  L+ L 
Sbjct: 73  KNLKNLHTLILINNKISKIS---PGAFAPLVKLERLY 106

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             + L+ +DL   ++ TIE   +K +  L +L  L 
Sbjct: 53 SNFSELQWLDLSRCEIETIE---DKAWHGLHHLSNLI 86

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            QL +L  +D   N + T +     +     +L + +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGI---LQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           LT+L+++      + ++E++       L  LK L+
Sbjct: 103 LTSLENLVAVETKLASLESF---PIGQLITLKKLN 134

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            QL  LK +++ +N + + +      F  L NL ++D
Sbjct: 125 GQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L  L+H+D  ++ +  +       F  L  L YLD
Sbjct: 396 MGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLLYLD 430

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L  L ++D+   +     +    +F  L +L  L 
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDG---IFLGLTSLNTLK 454

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L +LK ++L  N +  I +   + F  L NL+ L+
Sbjct: 287 ETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLN 320

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L NL+ ++L  N +  + +     F  LP + Y+D
Sbjct: 313 LDNLQVLNLSYNLLGELYSS---NFYGLPKVAYID 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L  L  +DL  N + ++       F  L +LK +D
Sbjct: 120 RNLKALTRLDLSKNQIRSLY--LHPSFGKLNSLKSID 154

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L NL+ +DL ++ +  +       F+ L +L  L 
Sbjct: 72  LPNLRILDLGSSKIYFLH---PDAFQGLFHLFELR 103

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L  + ++DL  N +  I+   ++ F+ L  L+ LD
Sbjct: 337 LPKVAYIDLQKNHIAIIQ---DQTFKFLEKLQTLD 368

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            +L+ ++L  N V+ +E      F  L NL+ L 
Sbjct: 55 FPHLEELELNENIVSAVE---PGAFNNLFNLRTLG 86

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + L  L+ ++L  N ++TIE     +   L  L+ + 
Sbjct: 245 RHLVYLRFLNLSYNPISTIEG---SMLHELLRLQEIQ 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L  L+ +++  N +TT+E   E VF  + NL+ L 
Sbjct: 295 LNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L NLK +++ +ND+  I     + F  L +L+ L 
Sbjct: 127 LYNLKSLEVGDNDLVYIS---HRAFSGLNSLEQLT 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           + +L+H+DL  ND   +     K F  L  L +L 
Sbjct: 120 MASLRHLDLSFNDFDVLP--VCKEFGNLTKLTFLG 152

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L+ L+ + L +N + +++     VF    +L+YLD
Sbjct: 75  LSELRVLRLSHNRIRSLD---FHVFLFNQDLEYLD 106

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           +L +L  ++L  N +T IE      FE   +++ L 
Sbjct: 51 GRLPHLVKLELKRNQLTGIE---PNAFEGASHIQELQ 84

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
               L+ +DL   ++ TIE   +  ++ L +L  L 
Sbjct: 49 FSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLI 82

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L  LK +++ +N + + +    + F  L NL++LD
Sbjct: 121 GHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLD 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           L++L+ +     ++ ++EN+       L  LK L+
Sbjct: 99  LSSLQKLVAVETNLASLENF---PIGHLKTLKELN 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 1   KQLTNLKHVDLFNNDVTT-------IENYREKVFELLPNLKYLDG 38
             L  L+ + L  N +            YR +V + LPNLK LDG
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
             L+ +DL NN ++ +       F+ L +L  L 
Sbjct: 55 YKKLRRIDLSNNQISELA---PDAFQGLRSLNSLV 86

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG 38
             L NL  ++LF+ +        +    +   +K  DG
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           +L NL+ + + +N +  +      VF+ L NL  L 
Sbjct: 83  ELKNLETLWVTDNKLQALPI---GVFDQLVNLAELR 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	95.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	95.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	95.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	95.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	95.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	94.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	94.89
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	94.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	94.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.25
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	94.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	93.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	93.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	93.79
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	93.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	93.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	93.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	93.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	93.51
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	93.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	93.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	93.41
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	93.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	93.28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	93.27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	93.15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	93.04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	93.03
3m19_A	251	Variable lymphocyte receptor A diversity region; a	93.02
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	93.01
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	92.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	92.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	92.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	92.77
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	92.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	92.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	92.6
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	92.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	92.38
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	92.35
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	92.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	92.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	92.24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	92.22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	92.16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	92.15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	92.05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	92.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	91.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	91.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	91.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	91.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	91.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	91.54
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	91.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	91.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	91.4
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	91.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	91.31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	91.26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	91.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	91.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	91.23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	91.19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	91.18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	90.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	90.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	90.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.57
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	90.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	90.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	90.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	90.34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	90.31
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	90.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	90.19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	90.05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	89.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	89.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	89.77
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	89.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	89.68
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	89.57
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	89.43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	89.34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	89.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	89.15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	89.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	89.0
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	88.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	88.64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	88.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	88.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	87.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	87.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	87.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	87.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	87.24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	86.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	86.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	86.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	86.7
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	86.55
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	86.48
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	86.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	86.37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	86.06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	85.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	85.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	85.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	85.03
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	84.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	84.95
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	84.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	83.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	83.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	83.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	83.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	83.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	82.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	82.29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	82.21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	82.16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	81.62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	81.12

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.42  E-value=2.8e-07  Score=63.00  Aligned_cols=49  Identities=57%  Similarity=1.039  Sum_probs=45.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSE   50 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~dsd   50 (106)
                      +|++|++|+|.+|+++..+.||..+|..+|+|++|+...+...++++++
T Consensus       118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  166 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD  166 (168)
T ss_dssp             SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred             cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence            6889999999999999999999999999999999999999999988754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=3.1e-07  Score=71.00  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             CCceEeCCCCCCCC----hhhhHHHHHHHCCCCceecCccCCC
Q psy8459           5 NLKHVDLFNNDVTT----IENYREKVFELLPNLKYLDGFDAKN   43 (106)
Q Consensus         5 ~L~~L~L~gNPV~~----~~~YR~~V~~~LPqLkyLDg~~v~~   43 (106)
                      +|+.|+|.+||||.    .++||..|++.||+|++|||..|+.
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p  263 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP  263 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence            89999999999996    5799999999999999999999865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.24  E-value=3e-07  Score=63.77  Aligned_cols=45  Identities=29%  Similarity=0.348  Sum_probs=41.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEA   46 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~   46 (106)
                      +|++|++|+|.+||++..+.||.++|..+|+|++||+..+...++
T Consensus       111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            578999999999999999999999999999999999988876554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.16  E-value=5e-07  Score=69.26  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             CCCCceEeCCCCCCCC--hhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~--~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|++|+|+.  ...+...++..||+|++|+.
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence            6677777777777765  22334445566677777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.15  E-value=1e-06  Score=62.12  Aligned_cols=47  Identities=34%  Similarity=0.454  Sum_probs=42.7

Q ss_pred             CCCCCCceEeCCCCCCCCh-------hhhHHHHHHHCCCCceecCccCCCCCCC
Q psy8459           1 KQLTNLKHVDLFNNDVTTI-------ENYREKVFELLPNLKYLDGFDAKNNEAP   47 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~-------~~YR~~V~~~LPqLkyLDg~~v~~~E~~   47 (106)
                      .+|++|++|+|.+||++..       ..|+..+|..+|+|++||+..|+..++.
T Consensus       137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~  190 (198)
T 1ds9_A          137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDERE  190 (198)
T ss_dssp             TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTT
T ss_pred             hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHH
Confidence            3689999999999999776       8899999999999999999999988874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.04  E-value=5.1e-06  Score=63.60  Aligned_cols=36  Identities=11%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      +|++|++|+|.+|+++....|...+...||+++.++
T Consensus       301 ~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~  336 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE  336 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCE
T ss_pred             cCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcch
Confidence            379999999999999999989999999999998654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.96  E-value=5.4e-06  Score=55.47  Aligned_cols=38  Identities=61%  Similarity=1.120  Sum_probs=35.1

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|+++..+.|+..+|..+|+|++||..
T Consensus       111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            57899999999999999999999999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.76  E-value=0.0004  Score=57.52  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      +|++|++|+|.+|+++..+.++..++..||+|++|+
T Consensus       531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            578999999999999998889988999999999986

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.53  E-value=0.0014  Score=47.17  Aligned_cols=45  Identities=24%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             CCCCCceEeCCCCCCC----ChhhhHHHHHHHCCCCceecCccCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVT----TIENYREKVFELLPNLKYLDGFDAKNNEA   46 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~----~~~~YR~~V~~~LPqLkyLDg~~v~~~E~   46 (106)
                      +|++|++|+|.+||+.    ....||.++....+.+..|||..|...+.
T Consensus       157 ~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~  205 (229)
T 3e6j_A          157 RLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDS  205 (229)
T ss_dssp             TCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTC
T ss_pred             CCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCc
Confidence            5789999999999984    35678999999999999999988776543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=95.70  E-value=0.012  Score=38.86  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=16.8

Q ss_pred             CCCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++. .+    .++..+|+|++|+.
T Consensus        62 ~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l   95 (149)
T 2je0_A           62 KLNKLKKLELSDNRVSGGLE----VLAEKCPNLTHLNL   95 (149)
T ss_dssp             CCTTCCEEECCSSCCCSCTH----HHHHHCTTCCEEEC
T ss_pred             cCCCCCEEECCCCcccchHH----HHhhhCCCCCEEEC
Confidence            34555555555555554 22    24444555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=95.67  E-value=0.012  Score=43.70  Aligned_cols=39  Identities=18%  Similarity=0.091  Sum_probs=32.8

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      ++++|++|+|.+|.++..+..-..++..+++|++|+...
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  237 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH  237 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence            578999999999999887777777888999999998643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=95.39  E-value=0.0062  Score=42.43  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=21.8

Q ss_pred             CCCCCceEeCCCCC-CCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNND-VTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|+ ++..+     .|..+|+|++|+..
T Consensus       134 ~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          134 TLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECT
T ss_pred             hCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECC
Confidence            46777777777776 66654     35667777777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=95.39  E-value=0.012  Score=43.70  Aligned_cols=39  Identities=13%  Similarity=0.042  Sum_probs=29.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|++|+|.+|.++..+..-..++..+++|++||...
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~  233 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH  233 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence            467788888888888776666666778889999888643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=95.37  E-value=0.011  Score=39.84  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             CCCCCceEeCCCCCCCC-hhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTT-IENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~-~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++. .+    .++..+|+|++|+.
T Consensus        69 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L  102 (168)
T 2ell_A           69 KLPKLKKLELSENRIFGGLD----MLAEKLPNLTHLNL  102 (168)
T ss_dssp             CCSSCCEEEEESCCCCSCCC----HHHHHCTTCCEEEC
T ss_pred             cCCCCCEEECcCCcCchHHH----HHHhhCCCCCEEec
Confidence            34555555555555555 22    23444555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.27  E-value=0.0084  Score=41.68  Aligned_cols=34  Identities=35%  Similarity=0.482  Sum_probs=18.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.   .+|..|++|++|+.
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPT---GVFDKLTQLTQLDL   88 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCcCCCEEECCCCCCCccCh---hHhCCcchhhEEEC
Confidence            35566666666666655432   13455566665554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.16  E-value=0.0084  Score=41.33  Aligned_cols=34  Identities=38%  Similarity=0.505  Sum_probs=19.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.   .+|..+|+|++|+.
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L   85 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSL   85 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CcccCCEEECCCCCcCccCh---hhccCCCCCCEEEC
Confidence            35566666666666655432   23455666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.11  E-value=0.0087  Score=41.60  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=16.3

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+.   .+|..|++|++|+.
T Consensus        80 l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPR---GAFDNLKSLTHIYL  112 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEEC
T ss_pred             cchhhEEECCCCccceeCH---HHhccccCCCEEEe
Confidence            4555555555555554332   23444555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=94.94  E-value=0.01  Score=40.83  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.   .+|..|++|++|+.
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L  109 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPR---GAFDNLKSLTHIWL  109 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCCCCCEEECCCCccCEeCH---HHhcCCCCCCEEEe
Confidence            46677777777777766533   24566777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=94.89  E-value=0.018  Score=39.37  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=14.8

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|.+|.++..+...  .|..+|+|++|+
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~--~l~~l~~L~~L~  119 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLD--PLASLKSLTYLC  119 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGG--GGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcchhhH--hhhcCCCCCEEE
Confidence            344455555555444443321  234455555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=94.83  E-value=0.018  Score=40.00  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=21.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.++...   ...|..+|+|++|+..
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~---~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSI---LTKINTLPKVNSIDLS  144 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGG---HHHHTTCSSCCEEECC
T ss_pred             CCCCCCEEEecCCccCcHh---HHHHhhCCCCCEEEcc
Confidence            4667777777777776521   2345667777777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.67  E-value=0.022  Score=43.70  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|++|.++..+... .++..||+|++|+..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls  204 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLS  204 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECT
T ss_pred             hCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECC
Confidence            4789999999999999876543 367889999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=94.63  E-value=0.025  Score=41.94  Aligned_cols=33  Identities=30%  Similarity=0.227  Sum_probs=18.1

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|+++...   ...|..+|+|++|+.
T Consensus       286 l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFL  318 (347)
T ss_dssp             CTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEEC
T ss_pred             CCCCCEEECcCCcCCCcC---hhHhhccccCCEEEc
Confidence            556666666666665432   124555666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.25  E-value=0.02  Score=38.97  Aligned_cols=34  Identities=35%  Similarity=0.459  Sum_probs=17.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..+.   .+|..+++|++|+.
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPN---GVFDKLTQLKELAL  107 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCCccCEEECCCCCccccCH---HHhhCCcccCEEEC
Confidence            35566666666666655432   13444555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=94.20  E-value=0.023  Score=41.69  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .|++|++|+|.+|.++..+.     |..||+|++|+..
T Consensus        61 ~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~L~   93 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISDLSP-----LKDLTKLEELSVN   93 (263)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEECC
T ss_pred             hCCCCCEEECCCCccCCChh-----hccCCCCCEEECC
Confidence            46677777777777777654     6677777777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.19  E-value=0.032  Score=40.65  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             CCceEeCCCCC-CCChhhhHHHHHHHCCCCceecCcc
Q psy8459           5 NLKHVDLFNND-VTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         5 ~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|+|++|+ ||. .+..  .++.||+|++|+-..
T Consensus       115 ~L~~L~Ls~C~~ITD-~Gl~--~L~~~~~L~~L~L~~  148 (176)
T 3e4g_A          115 SMLEMEIISCGNVTD-KGII--ALHHFRNLKYLFLSD  148 (176)
T ss_dssp             HCCEEEEESCTTCCH-HHHH--HGGGCTTCCEEEEES
T ss_pred             CCCEEEcCCCCcCCH-HHHH--HHhcCCCCCEEECCC
Confidence            56677777666 333 2322  345567777666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=93.86  E-value=0.026  Score=39.24  Aligned_cols=34  Identities=35%  Similarity=0.492  Sum_probs=18.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..+.   .+|..+|+|++|+.
T Consensus        98 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRL  131 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CccCCCEEEcCCCcCcccCH---hHhccCCcCCEEEC
Confidence            35566666666666654432   13445555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=93.79  E-value=0.0018  Score=47.78  Aligned_cols=17  Identities=35%  Similarity=0.634  Sum_probs=8.7

Q ss_pred             CCCCceEeCCCCCCCCh
Q psy8459           3 LTNLKHVDLFNNDVTTI   19 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~   19 (106)
                      |++|++|+|.+|+++..
T Consensus       149 l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          149 LSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CTTCCEEECTTSCCCBC
T ss_pred             CCCCCEEECCCCcCcch
Confidence            44555555555555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=93.79  E-value=0.046  Score=40.78  Aligned_cols=30  Identities=40%  Similarity=0.508  Sum_probs=13.4

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|.+|.++..+.     |..+|+|++|+
T Consensus       128 l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~  157 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNISP-----LAGLTNLQYLS  157 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcCcc-----ccCCCCccEEE
Confidence            3444444444444444332     34444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.78  E-value=0.024  Score=39.90  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=16.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.   ..|..+|+|++|+.
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPP---RTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEEC
T ss_pred             CCCCCCEEECCCCccCEeCH---HHhCCCCCCCEEEC
Confidence            34555555555555554321   13444555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=93.75  E-value=0.032  Score=37.90  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=19.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..+.   .+|..+++|++|+.
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l   83 (177)
T 2o6r_A           50 KLTQLTKLSLSQNQIQSLPD---GVFDKLTKLTILYL   83 (177)
T ss_dssp             TCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CcccccEEECCCCcceEeCh---hHccCCCccCEEEC
Confidence            35566666666666655432   23455666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=93.62  E-value=0.02  Score=40.91  Aligned_cols=17  Identities=29%  Similarity=0.595  Sum_probs=8.3

Q ss_pred             CCCCceEeCCCCCCCCh
Q psy8459           3 LTNLKHVDLFNNDVTTI   19 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~   19 (106)
                      |++|++|+|.+|.++..
T Consensus        79 l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             CSSCCEEECCSSCCCCC
T ss_pred             CcCCCEEECCCCcCCcc
Confidence            44455555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=93.59  E-value=0.053  Score=40.47  Aligned_cols=16  Identities=19%  Similarity=0.372  Sum_probs=6.8

Q ss_pred             CCCCceEeCCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~   18 (106)
                      |++|++|+|.+|.++.
T Consensus       172 l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          172 LSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCccCc
Confidence            3444444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=93.52  E-value=0.018  Score=42.97  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|+.|+|++|.++..+.   ..|..|++|++|+...
T Consensus        54 ~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           54 GLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCS
T ss_pred             cccCCCEEECCCCccceeCH---HHhcCCcCCCEEeCCC
Confidence            46677777777777666432   2566777777777543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=93.51  E-value=0.032  Score=38.77  Aligned_cols=33  Identities=36%  Similarity=0.482  Sum_probs=15.6

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++..+.   .+|..+++|++|+.
T Consensus        75 l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPN---GVFDKLTQLKELAL  107 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCCcCEEECCCCcCCccCH---hHhcCccCCCEEEc
Confidence            4455555555555544322   13444555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=93.49  E-value=0.038  Score=41.01  Aligned_cols=15  Identities=27%  Similarity=0.476  Sum_probs=5.9

Q ss_pred             CCCceEeCCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVTT   18 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~   18 (106)
                      ++|++|+|.+|.++.
T Consensus       156 ~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          156 TKLDTLSLEDNQISD  170 (291)
T ss_dssp             TTCSEEECCSSCCCC
T ss_pred             CCCCEEEccCCcccc
Confidence            333444444443333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=93.47  E-value=0.024  Score=40.57  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=16.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.    .|..+++|++|+.
T Consensus       110 ~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L  142 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTELPR----GIERLTHLTHLAL  142 (229)
T ss_dssp             TCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEEC
T ss_pred             cchhhCeEeccCCcccccCc----ccccCCCCCEEEC
Confidence            34555555555555554432    1344555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=93.41  E-value=0.033  Score=40.59  Aligned_cols=32  Identities=34%  Similarity=0.674  Sum_probs=14.0

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|.+|.++..+.   .+|..+|+|++|+
T Consensus       180 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~  211 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIW  211 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCH---HHHhCCcCCCEEE
Confidence            3444444444444444322   2334445555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=93.39  E-value=0.056  Score=40.11  Aligned_cols=14  Identities=36%  Similarity=0.275  Sum_probs=5.4

Q ss_pred             CCCceEeCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVT   17 (106)
Q Consensus         4 ~~L~~L~L~gNPV~   17 (106)
                      ++|++|+|.+|.++
T Consensus        90 ~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           90 KNLGWLFLDENKVK  103 (291)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCC
Confidence            33333333333333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.34  E-value=0.026  Score=39.65  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++|.|+..+.   ..|..|++|++|+.
T Consensus        52 ~l~~L~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           52 NYKHLTLIDLSNNRISTLSN---QSFSNMTQLLTLIL   85 (193)
T ss_dssp             GCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             cccCCCEEECCCCcCCEeCH---hHccCCCCCCEEEC
Confidence            35667777777777665432   24556677776665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=93.28  E-value=0.068  Score=38.71  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..+.   ..|..+|+|++|+.
T Consensus       199 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSALPT---EALAPLRALQYLRL  232 (285)
T ss_dssp             TCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEEEC
T ss_pred             CcccccEeeCCCCcCCcCCH---HHcccCcccCEEec
Confidence            45666666666666665432   35666777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=93.27  E-value=0.054  Score=40.04  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=14.7

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+     .|..+|+|++|+.
T Consensus        87 l~~L~~L~L~~n~i~~~~-----~~~~l~~L~~L~l  117 (347)
T 4fmz_A           87 LVKLTNLYIGTNKITDIS-----ALQNLTNLRELYL  117 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-----GGTTCTTCSEEEC
T ss_pred             CCcCCEEEccCCcccCch-----HHcCCCcCCEEEC
Confidence            444555555555444432     1444555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=93.15  E-value=0.038  Score=39.63  Aligned_cols=14  Identities=36%  Similarity=0.484  Sum_probs=5.8

Q ss_pred             CCCceEeCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVT   17 (106)
Q Consensus         4 ~~L~~L~L~gNPV~   17 (106)
                      ++|++|+|.+|.++
T Consensus       131 ~~L~~L~Ls~N~l~  144 (251)
T 3m19_A          131 TKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CcccEEECcCCcCC
Confidence            34444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.09  E-value=0.024  Score=39.52  Aligned_cols=14  Identities=29%  Similarity=0.446  Sum_probs=5.9

Q ss_pred             CCCceEeCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVT   17 (106)
Q Consensus         4 ~~L~~L~L~gNPV~   17 (106)
                      ++|++|+|.+|.++
T Consensus        54 ~~L~~L~Ls~N~l~   67 (192)
T 1w8a_A           54 PHLVKLELKRNQLT   67 (192)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            34444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=93.04  E-value=0.033  Score=39.72  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=14.2

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++..+.   .+|..+++|++|+.
T Consensus        80 l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L  112 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQH---KMFKGLESLKTLML  112 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCG---GGGTTCSSCCEEEC
T ss_pred             CCCCCEEECCCCccCccCH---hHhcCCcCCCEEEC
Confidence            4444444554444444321   12344444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=93.03  E-value=0.074  Score=39.83  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.++..+.   .+|..+++|++|+..
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCH---HHHTTCTTCSEEECT
T ss_pred             CCCCCCEEECCCCcCCcCCH---hHhCCCccCCEEECC
Confidence            45667777777776665432   346667777777653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=93.02  E-value=0.041  Score=39.49  Aligned_cols=17  Identities=29%  Similarity=0.421  Sum_probs=8.9

Q ss_pred             CCCCceEeCCCCCCCCh
Q psy8459           3 LTNLKHVDLFNNDVTTI   19 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~   19 (106)
                      +++|++|+|.+|.++..
T Consensus       106 l~~L~~L~L~~N~l~~~  122 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSL  122 (251)
T ss_dssp             CTTCCEEECCSSCCCCC
T ss_pred             cCCCCEEEcCCCcCCCc
Confidence            45555555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=93.01  E-value=0.066  Score=39.29  Aligned_cols=13  Identities=15%  Similarity=0.123  Sum_probs=6.3

Q ss_pred             HHHHCCCCceecC
Q psy8459          26 VFELLPNLKYLDG   38 (106)
Q Consensus        26 V~~~LPqLkyLDg   38 (106)
                      ++..+|+|++|+.
T Consensus       163 ~~~~~~~L~~L~l  175 (336)
T 2ast_B          163 LLSSCSRLDELNL  175 (336)
T ss_dssp             HHHHCTTCCEEEC
T ss_pred             HHhcCCCCCEEcC
Confidence            3444555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=92.97  E-value=0.027  Score=44.22  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=16.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.   .+|..|++|++|+.
T Consensus        98 ~L~~L~~L~Ls~N~l~~l~~---~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           98 SLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECG---GGGTTCTTCCEEEC
T ss_pred             CCCCCCEEEccCCcCCCCCH---HHhcCCCCCCEEEC
Confidence            34555555555555554332   23445555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=92.92  E-value=0.044  Score=39.06  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=18.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.|+....   ..|..+|+|++|+.
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L  135 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRV---DAFQDLHNLNLLSL  135 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCCCCCEEECCCCCCCEeCH---HHcCCCCCCCEEEC
Confidence            35566666666666655421   13455566665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.82  E-value=0.033  Score=37.79  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=21.1

Q ss_pred             CCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           5 NLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         5 ~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|+|++|.|+.++.   .+|..+|+|++|+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L   62 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPP---GLLDALPALRTAHL   62 (130)
T ss_dssp             TCSEEECTTSCCSSCCT---TTGGGCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCh---hhhhhccccCEEEe
Confidence            67777777777777643   35677777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=92.78  E-value=0.025  Score=39.41  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++++|++|+|.+|.++..+.   ..|..+|+|++|+..
T Consensus        76 ~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~  110 (192)
T 1w8a_A           76 GASHIQELQLGENKIKEISN---KMFLGLHQLKTLNLY  110 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECS---SSSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCcCCccCH---HHhcCCCCCCEEECC
Confidence            46677777777777766432   235567777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=92.77  E-value=0.044  Score=39.75  Aligned_cols=12  Identities=25%  Similarity=0.368  Sum_probs=4.6

Q ss_pred             CCceEeCCCCCC
Q psy8459           5 NLKHVDLFNNDV   16 (106)
Q Consensus         5 ~L~~L~L~gNPV   16 (106)
                      +|++|+|.+|.+
T Consensus        86 ~L~~L~l~~n~l   97 (270)
T 2o6q_A           86 NLETLWVTDNKL   97 (270)
T ss_dssp             TCCEEECCSSCC
T ss_pred             CCCEEECCCCcC
Confidence            333333333333

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=92.70  E-value=0.025  Score=39.32  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=20.3

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+     .|..+++|++|+.
T Consensus        47 l~~L~~L~ls~n~l~~l~-----~~~~l~~L~~L~l   77 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-----SLSGMENLRILSL   77 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-----CHHHHTTCCEEEE
T ss_pred             CCCCCEEECCCCCCcccc-----ccccCCCCCEEEC
Confidence            567777777777776654     3455666766654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=92.68  E-value=0.049  Score=41.42  Aligned_cols=37  Identities=24%  Similarity=0.227  Sum_probs=17.1

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+..-..-+..+|+|++||.
T Consensus       134 ~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A          134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            3455556666666555544321111244666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=92.60  E-value=0.05  Score=40.43  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=15.8

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|+.|+|.+|.++..+.   .+|..+++|++|+.
T Consensus       147 l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTELPA---GLLNGLENLDTLLL  179 (290)
T ss_dssp             CTTCCEEECTTSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred             ccCCCEEECCCCcCCccCH---HHhcCcCCCCEEEC
Confidence            3455555555555544322   23445555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=92.52  E-value=0.053  Score=39.33  Aligned_cols=15  Identities=40%  Similarity=0.707  Sum_probs=6.3

Q ss_pred             CCCceEeCCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVTT   18 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~   18 (106)
                      ++|++|+|.+|.++.
T Consensus       157 ~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          157 TSLKELRLYNNQLKR  171 (270)
T ss_dssp             TTCCEEECCSSCCSC
T ss_pred             cccceeEecCCcCcE
Confidence            344444444444433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=92.38  E-value=0.065  Score=39.13  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++++|++|+|.+|.++..+..   .|..+|+|++|+..
T Consensus       197 ~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~  231 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYS  231 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCCSG---GGTTCTTCCEEECT
T ss_pred             CCCCCCEEECCCCccCccChh---hccCcccCCEeECC
Confidence            456666777777666654332   24566777776653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=92.35  E-value=0.031  Score=43.87  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|++|.|+..+.   .+|..|++|++|+..
T Consensus        74 ~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           74 SFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILT  108 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECT
T ss_pred             CCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEcc
Confidence            46677777777777665432   246667777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=92.31  E-value=0.062  Score=39.09  Aligned_cols=17  Identities=29%  Similarity=0.407  Sum_probs=8.5

Q ss_pred             CCCCceEeCCCCCCCCh
Q psy8459           3 LTNLKHVDLFNNDVTTI   19 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~   19 (106)
                      |++|++|+|.+|.++..
T Consensus        62 l~~L~~L~l~~n~l~~~   78 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI   78 (272)
T ss_dssp             CTTCCEEECTTSCCCCC
T ss_pred             CCCCcEEECCCCCCCCc
Confidence            44555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=92.26  E-value=0.077  Score=37.77  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=17.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++....   ..|..+++|++|+.
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L  136 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSL  136 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCT---TSSTTCTTCSEEEC
T ss_pred             CCcCCCEEECCCCcCCeECH---hHcCCCccCCEEEC
Confidence            35566666666666655421   12344555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=92.24  E-value=0.057  Score=40.11  Aligned_cols=12  Identities=25%  Similarity=0.027  Sum_probs=5.5

Q ss_pred             HHHCCCCceecC
Q psy8459          27 FELLPNLKYLDG   38 (106)
Q Consensus        27 ~~~LPqLkyLDg   38 (106)
                      |..+++|++|+.
T Consensus       120 ~~~l~~L~~L~L  131 (290)
T 1p9a_G          120 LRGLGELQELYL  131 (290)
T ss_dssp             TTTCTTCCEEEC
T ss_pred             HcCCCCCCEEEC
Confidence            344444554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=92.22  E-value=0.063  Score=39.85  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=21.8

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .+++|++|+|.+|.++..+..    |..+|+|++|+..
T Consensus       239 ~l~~L~~L~L~~N~l~~lp~~----l~~l~~L~~L~l~  272 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRVPAG----LPDLKLLQVVYLH  272 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTT----GGGCTTCCEEECC
T ss_pred             CCCCCCEEECCCCcCeecChh----hhcCccCCEEECC
Confidence            356677777777777665442    5667777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=92.16  E-value=0.042  Score=40.87  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=16.5

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++...   ...|..+++|++|+.
T Consensus        33 ~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L   65 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQIS---AADLAPFTKLELLNL   65 (317)
T ss_dssp             GGGCSEEECTTSCCCCCC---HHHHTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCC---HHHhhCCCcCCEEEC
Confidence            345555555555555431   124455555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=92.15  E-value=0.093  Score=40.98  Aligned_cols=30  Identities=47%  Similarity=0.706  Sum_probs=13.1

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|.+|.++..+.     |..+|+|++|+
T Consensus       111 l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~  140 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDIDP-----LKNLTNLNRLE  140 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GTTCTTCSEEE
T ss_pred             CCCCCEEECCCCCCCCChH-----HcCCCCCCEEE
Confidence            3444444444444444322     34444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=92.05  E-value=0.071  Score=40.79  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=16.5

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+.   .+|..+|+|++|+.
T Consensus       370 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l  402 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWL  402 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred             cccccEEECCCCccccCCH---hHhccCCcccEEEc
Confidence            4555555555555554332   13445555555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=92.04  E-value=0.06  Score=40.33  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=26.1

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++++|++|+|.+|.++..+.   .+|..+|+|++|+..
T Consensus       275 ~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          275 QISGLLELEFSRNQLKSVPD---GIFDRLTSLQKIWLH  309 (353)
T ss_dssp             TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECC
T ss_pred             cccCCCEEECCCCCCCccCH---HHHhcCCCCCEEEee
Confidence            46788888888888887654   356778888888753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=91.89  E-value=0.13  Score=40.58  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=25.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++|+++..  --..++..+|+|++|+-
T Consensus       486 ~~~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          486 GCPNLQKLEMRGCCFSER--AIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             CCTTCCEEEEESCCCBHH--HHHHHHHHCSSCCEEEE
T ss_pred             cCcccCeeeccCCCCcHH--HHHHHHHhcCccCeeEC
Confidence            578899999999987432  12346678999999875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=91.76  E-value=0.044  Score=40.54  Aligned_cols=38  Identities=16%  Similarity=0.089  Sum_probs=20.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHH-HHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYRE-KVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~-~V~~~LPqLkyLDg~   39 (106)
                      ++++|++|+|++|++........ .++..+|+|++|+..
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence            45666677777666544322111 123456777777653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=91.72  E-value=0.062  Score=40.53  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=22.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|++|+|.+|.++..+.    .|..|++|++|+...
T Consensus       125 ~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A          125 QFAGLETLTLARNPLRALPA----SIASLNRLRELSIRA  159 (328)
T ss_dssp             GGTTCSEEEEESCCCCCCCG----GGGGCTTCCEEEEEE
T ss_pred             ccCCCCEEECCCCccccCcH----HHhcCcCCCEEECCC
Confidence            35677777777777765543    366677777776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=91.69  E-value=0.061  Score=40.58  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=22.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|++|+|.+|.++..+.    .|..+|+|++|+...
T Consensus       204 ~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRG  238 (328)
T ss_dssp             GCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTT
T ss_pred             CCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcC
Confidence            35667777777777766543    356677777776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.64  E-value=0.054  Score=43.34  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=14.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|++|.++....     |..+|+|++|+.
T Consensus        57 l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L   87 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD-----LESLSTLRTLDL   87 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE-----CTTCTTCCEEEC
T ss_pred             CCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEe
Confidence            4455555555555543322     444555555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=91.54  E-value=0.098  Score=38.67  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=23.4

Q ss_pred             CCCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|++|+|.+|.++.. +.    .|..+|+|++|+...
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSK  109 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCS
T ss_pred             cCCCCCEEECCCCcCCeeCHH----HhcCCCCCCEEECCC
Confidence            467777777777777664 22    456677777777643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=91.48  E-value=0.076  Score=39.27  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=18.7

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++..+.    .|..+|+|++|+.
T Consensus       239 l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l  270 (330)
T 1xku_A          239 TPHLRELHLNNNKLVKVPG----GLADHKYIQVVYL  270 (330)
T ss_dssp             STTCCEEECCSSCCSSCCT----TTTTCSSCCEEEC
T ss_pred             CCCCCEEECCCCcCccCCh----hhccCCCcCEEEC
Confidence            4566666666666665443    2455666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=91.45  E-value=0.13  Score=42.99  Aligned_cols=32  Identities=31%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      .|++|+.|+|++|.++..+.     |..||+|++|+.
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~L   94 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFL   94 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEEC
T ss_pred             cCCCCCEEEeeCCCCCCChh-----hccCCCCCEEEC
Confidence            35666667776666666544     556666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=91.40  E-value=0.075  Score=41.59  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=17.6

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|+++..+..   +|..+|+|++|+.
T Consensus       443 l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l  475 (520)
T 2z7x_B          443 LEALQELNVASNQLKSVPDG---IFDRLTSLQKIWL  475 (520)
T ss_dssp             CTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCcCCccCHH---HhccCCcccEEEC
Confidence            45555555555555554432   3455555655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=91.38  E-value=0.14  Score=38.66  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      .+++|++|+|.+|+++..+..    +..+|+|++|+.
T Consensus       293 ~l~~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~L  325 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYL  325 (390)
T ss_dssp             CCTTCCEEECCSSCCCCCGGG----HHHHTTCSEEEC
T ss_pred             CCCCCCEEECCCCcceecCcc----ccccCcCCEEEC
Confidence            467777777777777765432    455677777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=91.31  E-value=0.095  Score=39.66  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=14.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+.   .+|..+|+|++|+.
T Consensus       116 l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L  148 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSM  148 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcCCH---HHhcCCCCCcEEEC
Confidence            4445555555554444322   13344555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=91.26  E-value=0.08  Score=41.07  Aligned_cols=33  Identities=39%  Similarity=0.399  Sum_probs=14.5

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+.   .+|..+++|++|+.
T Consensus        79 l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L  111 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPL---GVFTGLSNLTKLDI  111 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCT---TSSTTCTTCCEEEC
T ss_pred             CccCCEEECCCCcCCccCc---ccccCCCCCCEEEC
Confidence            4445555555554444321   12334444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=91.25  E-value=0.17  Score=39.54  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=15.4

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+.     |..+|+|++|+.
T Consensus        89 l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L  119 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADITP-----LANLTNLTGLTL  119 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEEC
T ss_pred             cccCCEEECCCCccccChh-----hcCCCCCCEEEC
Confidence            4444555555554444332     455555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=91.25  E-value=0.13  Score=36.98  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=17.9

Q ss_pred             CCCCCceEeCCCCCCCCh--hhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTI--ENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~--~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..  +.    .|..+++|++|+.
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~L  156 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDL  156 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEEC
T ss_pred             cCCCCCEEECcCCccceecCch----hhccCCCCCEEEC
Confidence            345666666666665542  22    3455666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=91.23  E-value=0.085  Score=43.57  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=13.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|++|.++..+     .|..||+|++|+
T Consensus       485 l~~L~~L~Ls~N~l~~lp-----~l~~l~~L~~L~  514 (567)
T 1dce_A          485 LRCLEVLQASDNALENVD-----GVANLPRLQELL  514 (567)
T ss_dssp             CTTCCEEECCSSCCCCCG-----GGTTCSSCCEEE
T ss_pred             CCCCCEEECCCCCCCCCc-----ccCCCCCCcEEE
Confidence            444455555555444443     234444555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=91.19  E-value=0.14  Score=40.13  Aligned_cols=35  Identities=34%  Similarity=0.601  Sum_probs=21.8

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|++|.++..+.   ..|..+++|++|+..
T Consensus        72 ~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           72 SLGSLEHLDLSDNHLSSLSS---SWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCTTCCEEECTTSCCCSCCH---HHHTTCTTCCEEECT
T ss_pred             ccccCCEEECCCCccCccCH---HHhccCCCCcEEECC
Confidence            45667777777776665432   246677777777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=91.18  E-value=0.091  Score=38.05  Aligned_cols=14  Identities=14%  Similarity=0.135  Sum_probs=6.0

Q ss_pred             CCCceEeCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVT   17 (106)
Q Consensus         4 ~~L~~L~L~gNPV~   17 (106)
                      ++|++|+|.+|.++
T Consensus       105 ~~L~~L~l~~n~l~  118 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQ  118 (285)
T ss_dssp             TTCCEEECTTSCCC
T ss_pred             cCCCEEECCCCcCC
Confidence            34444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=90.96  E-value=0.084  Score=40.12  Aligned_cols=34  Identities=41%  Similarity=0.607  Sum_probs=16.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.|+..+.   ..|..|++|++|+.
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~L   95 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISS---EAFVPVPNLRYLDL   95 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEEC
T ss_pred             cccccCEEECCCCcCCccCh---hhccCCCCCCEEEC
Confidence            45555555555555554331   13344555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=90.85  E-value=0.22  Score=39.06  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=27.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA   41 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v   41 (106)
                      .|++|++|+|.+|.++..+.. ..+|..+|+|++|+....
T Consensus       359 ~l~~L~~L~Ls~N~l~~~~~~-~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          359 AWPSLQTLVLSQNHLRSMQKT-GEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             SSTTCCEEECTTSCCCCHHHH-HHHGGGCTTCCEEECTTC
T ss_pred             ccccCcEEEccCCcccccccc-hhhhhcCCCCCEEECCCC
Confidence            467888888888888776432 235788888888886443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=90.82  E-value=0.21  Score=39.06  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|+.|+|.+|.++..+... ..|..+|+|++|+..
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECC
T ss_pred             cCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECC
Confidence            4677777777777777643322 356778888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.57  E-value=0.18  Score=40.94  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=24.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .|++|++|+|++|+++..+..    |..+|+|++|+..
T Consensus       299 ~l~~L~~L~Ls~N~l~~i~~~----~~~l~~L~~L~L~  332 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYLD  332 (597)
T ss_dssp             CCTTCCEEECCSSCCCCCGGG----HHHHTTCSEEECC
T ss_pred             cCCCCcEEECCCCCCCccCcc----cccCCCCCEEECC
Confidence            467888888888888876542    4566777777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=90.56  E-value=0.11  Score=38.49  Aligned_cols=35  Identities=31%  Similarity=0.342  Sum_probs=22.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.++....   ..|..+|+|++|+..
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHE---KAFSPLRKLQKLYIS  110 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECG---GGSTTCTTCCEEECC
T ss_pred             CCCCCcEEECCCCccCccCH---hHhhCcCCCCEEECC
Confidence            46677777777777765411   245667777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=90.54  E-value=0.022  Score=47.56  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++|+++..+     .|..||+|+.|+.
T Consensus       173 ~l~~L~~L~Ls~N~i~~l~-----~l~~l~~L~~L~L  204 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLEL  204 (605)
T ss_dssp             TCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEC
T ss_pred             cCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEc
Confidence            4677777777777776653     2556777776664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=90.43  E-value=0.12  Score=39.98  Aligned_cols=18  Identities=28%  Similarity=0.421  Sum_probs=9.3

Q ss_pred             CCCCceEeCCCCCCCChh
Q psy8459           3 LTNLKHVDLFNNDVTTIE   20 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~   20 (106)
                      |++|++|+|.+|.++..+
T Consensus       184 l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             CSSCCEEECTTSCCSSCC
T ss_pred             ccccCeecCCCCcCcccc
Confidence            445555555555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=90.34  E-value=0.34  Score=35.45  Aligned_cols=13  Identities=38%  Similarity=0.370  Sum_probs=5.9

Q ss_pred             HHHHCCCCceecC
Q psy8459          26 VFELLPNLKYLDG   38 (106)
Q Consensus        26 V~~~LPqLkyLDg   38 (106)
                      ++..+|+|++|+.
T Consensus       217 ~~~~~~~L~~L~l  229 (336)
T 2ast_B          217 LVRRCPNLVHLDL  229 (336)
T ss_dssp             HHHHCTTCSEEEC
T ss_pred             HHhhCCCCCEEeC
Confidence            3444445554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=90.31  E-value=0.091  Score=40.87  Aligned_cols=35  Identities=31%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|+++..+.   ..|..+|+|++|+..
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLG  179 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECT---TTTTTCTTCCEEECC
T ss_pred             ccCCCCEEECCCCCcceeCH---hHHhcCCcccEEeCC
Confidence            35566666666666655432   234455555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=90.27  E-value=0.079  Score=38.67  Aligned_cols=34  Identities=35%  Similarity=0.618  Sum_probs=16.6

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++..+..  ..|..+++|++|+.
T Consensus       100 l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l  133 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDI  133 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTT--TTTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCcccccccc--hhhhhccCCCEEEC
Confidence            45555555555555443321  13445555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.21  E-value=0.12  Score=42.02  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=14.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++..+.   .+|..+|+|++|+.
T Consensus       122 l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L  154 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSM  154 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEEC
T ss_pred             CCCCCEEEeeCCCCCCCCH---HHhccCCCCCEEEe
Confidence            4445555555555444322   13344455555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=90.19  E-value=0.13  Score=40.95  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=7.7

Q ss_pred             CCCCceEeCCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~   18 (106)
                      |++|++|+|.+|.++.
T Consensus        79 l~~L~~L~Ls~n~l~~   94 (606)
T 3vq2_A           79 LHHLSNLILTGNPIQS   94 (606)
T ss_dssp             CTTCCEEECTTCCCCC
T ss_pred             hhhcCEeECCCCcccc
Confidence            4445555555554444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=90.05  E-value=0.15  Score=37.88  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CCCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           1 KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      .+|++|++|+|++|.++....     |..+|+|++|+...
T Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           55 APFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNN   89 (317)
T ss_dssp             TTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCS
T ss_pred             hCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcC
Confidence            368999999999999987654     78899999998743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=89.86  E-value=0.12  Score=41.19  Aligned_cols=32  Identities=25%  Similarity=0.518  Sum_probs=16.7

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|.+|.++..+..   +|..+|+|++|+
T Consensus       472 l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~  503 (562)
T 3a79_B          472 LQALQELNVASNQLKSVPDG---VFDRLTSLQYIW  503 (562)
T ss_dssp             SCCCSEEECCSSCCCCCCTT---STTTCTTCCCEE
T ss_pred             CCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEE
Confidence            45555555555555554432   345555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=89.80  E-value=0.13  Score=38.07  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=20.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHC-----CCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELL-----PNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~L-----PqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..+.    .|..+     |+|++|+.
T Consensus       119 ~l~~L~~L~Ls~N~l~~~~~----~~~~l~~~~~~~L~~L~L  156 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATRDA----WLAELQQWLKPGLKVLSI  156 (312)
T ss_dssp             CSCCCSEEEEESCBCSSSSS----HHHHHHTTCCTTCCEEEE
T ss_pred             cCCCccEEEccCCCCcchhH----HHHHHHHhhcCCCcEEEe
Confidence            46777778888777776642    22222     66766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=89.77  E-value=0.13  Score=36.96  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=17.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|.+|.++..+.   ..|..+++|++|+.
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l  107 (276)
T 2z62_A           74 SLSHLSTLILTGNPIQSLAL---GAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEEC
T ss_pred             CCcCCCEEECCCCccCccCh---hhhcCCccccEEEC
Confidence            35566666666666654321   13344455555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=89.73  E-value=0.073  Score=39.64  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             CCCCCceEeCCC-CCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFN-NDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~g-NPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      .+++|+.|+|.+ |.++..+.   ..|..|++|++|+...
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~---~~~~~l~~L~~L~l~~   65 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVK   65 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCS
T ss_pred             CCCCeeEEEccCCCCCCCcCh---hHhccccCCCEEECCC
Confidence            467899999996 99988653   2577899999998744

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.72  E-value=0.36  Score=33.63  Aligned_cols=36  Identities=14%  Similarity=0.075  Sum_probs=16.7

Q ss_pred             CCCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg   38 (106)
                      .++|++|+|.+|.|.... .+=...+...++|++|+.
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L  100 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV  100 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence            345555555555554421 112223444455555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=89.68  E-value=0.12  Score=40.04  Aligned_cols=34  Identities=35%  Similarity=0.429  Sum_probs=16.6

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.|+..+.   ..|..|++|++|+.
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~---~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEI---GAFNGLANLNTLEL  119 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECG---GGGTTCSSCCEEEC
T ss_pred             CCCCCCEEECCCCcCCccCh---hhccCCccCCEEEC
Confidence            34555555555555544321   13444555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=89.57  E-value=0.16  Score=38.83  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=16.5

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++....  ..+|..+++|++|+.
T Consensus       128 l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L  161 (455)
T 3v47_A          128 LTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CTTCCEEECCSSBCCSCCC--CGGGGGCTTCCEEEC
T ss_pred             cccCCEEECCCCccCccCc--ccccCCCCcccEEeC
Confidence            4555555555555544311  012455666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=89.43  E-value=0.17  Score=40.12  Aligned_cols=14  Identities=36%  Similarity=0.316  Sum_probs=5.4

Q ss_pred             CCCceEeCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVT   17 (106)
Q Consensus         4 ~~L~~L~L~gNPV~   17 (106)
                      ++|++|+|.+|.++
T Consensus        85 ~~L~~L~Ls~N~l~   98 (457)
T 3bz5_A           85 TNLTYLACDSNKLT   98 (457)
T ss_dssp             TTCSEEECCSSCCS
T ss_pred             CCCCEEECcCCCCc
Confidence            33333333333333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=89.34  E-value=0.2  Score=37.23  Aligned_cols=32  Identities=31%  Similarity=0.308  Sum_probs=17.2

Q ss_pred             CCCCceEeCCCCCCC-ChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~-~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++ ..+.    .|..+|+|++|+.
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L  275 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNV  275 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCG----GGGGCTTCCEEEC
T ss_pred             cCCCCEEECcCCcccCcCCh----HHhcCcCCCEEEC
Confidence            455555666655554 2332    3455666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=89.33  E-value=0.18  Score=39.22  Aligned_cols=13  Identities=38%  Similarity=0.205  Sum_probs=6.7

Q ss_pred             HHHHCCCCceecC
Q psy8459          26 VFELLPNLKYLDG   38 (106)
Q Consensus        26 V~~~LPqLkyLDg   38 (106)
                      .|..+++|++|+.
T Consensus       237 ~~~~l~~L~~L~L  249 (452)
T 3zyi_A          237 SFHGLSSLKKLWV  249 (452)
T ss_dssp             GGTTCTTCCEEEC
T ss_pred             cccCccCCCEEEe
Confidence            3445555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=89.15  E-value=0.16  Score=40.45  Aligned_cols=10  Identities=30%  Similarity=0.481  Sum_probs=4.0

Q ss_pred             HHCCCCceec
Q psy8459          28 ELLPNLKYLD   37 (106)
Q Consensus        28 ~~LPqLkyLD   37 (106)
                      ..+++|++|+
T Consensus       143 ~~l~~L~~L~  152 (562)
T 3a79_B          143 GNLTKLTFLG  152 (562)
T ss_dssp             GGCTTCCEEE
T ss_pred             cccCcccEEe
Confidence            3344444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=89.08  E-value=0.16  Score=37.75  Aligned_cols=34  Identities=24%  Similarity=0.094  Sum_probs=25.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++++|++|+|.+|.++.....    |..+|+|++|+..
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLR  252 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECC
T ss_pred             cCCCCCEEECCCCceeeecCc----ccccCCCCEEECc
Confidence            578899999999988764332    5678899988864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=89.00  E-value=0.16  Score=39.77  Aligned_cols=10  Identities=50%  Similarity=0.561  Sum_probs=4.1

Q ss_pred             HHCCCCceec
Q psy8459          28 ELLPNLKYLD   37 (106)
Q Consensus        28 ~~LPqLkyLD   37 (106)
                      ..|++|++|+
T Consensus       146 ~~l~~L~~L~  155 (570)
T 2z63_A          146 SNLTNLEHLD  155 (570)
T ss_dssp             GGCTTCCEEE
T ss_pred             cccCCCCEEe
Confidence            3344444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=88.96  E-value=0.31  Score=34.33  Aligned_cols=32  Identities=31%  Similarity=0.351  Sum_probs=16.7

Q ss_pred             CCCceEeCCCCC-CCChhhhHHHHHHHC-CCCceecC
Q psy8459           4 TNLKHVDLFNND-VTTIENYREKVFELL-PNLKYLDG   38 (106)
Q Consensus         4 ~~L~~L~L~gNP-V~~~~~YR~~V~~~L-PqLkyLDg   38 (106)
                      ++|++|+|.+|+ ++..+.   .+|..+ ++|++|+.
T Consensus       179 ~~L~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDV  212 (239)
T ss_dssp             CEEEEEECTTCTTCCEECT---TTTTTCSBCCSEEEC
T ss_pred             CCCCEEEcCCCCCcccCCH---HHhhccccCCcEEEC
Confidence            456666666664 554322   134445 66666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=88.64  E-value=0.21  Score=39.61  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+      |..+|+|++|+.
T Consensus       104 ~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l  134 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNC  134 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC------CTTCTTCCEEEC
T ss_pred             CCCcCCEEECCCCcCCeec------CCCCCcCCEEEC
Confidence            4566777777777666653      456666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=88.49  E-value=0.17  Score=40.34  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             CCCCceEeCCCCCCCC--hhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTT--IENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~--~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++.  .+.    .|..|++|++|+.
T Consensus       127 l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~L  160 (606)
T 3vq2_A          127 LITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDL  160 (606)
T ss_dssp             CTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEEC
T ss_pred             CCCCCEEeCCCCcccceechH----hHhhcCCCCEEEc
Confidence            4444444444444442  122    3455566665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=88.16  E-value=0.27  Score=41.60  Aligned_cols=32  Identities=31%  Similarity=0.374  Sum_probs=15.4

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|++|.++..+.    .|..|++|++|+.
T Consensus       269 l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L  300 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYF  300 (727)
T ss_dssp             GTTCCEEECTTSCCSSCCS----SGGGGTTCSEEEC
T ss_pred             CCCCCEEeCcCCcCCccCh----hhcCCCCCCEEEC
Confidence            4455555555555554432    2344555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=87.98  E-value=0.22  Score=39.04  Aligned_cols=16  Identities=31%  Similarity=0.434  Sum_probs=7.5

Q ss_pred             CCCCceEeCCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~   18 (106)
                      |++|++|+|.+|.++.
T Consensus       469 l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             CTTCCEEECTTSCCCE
T ss_pred             ccCCCEEECCCCcccc
Confidence            4444444444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=87.84  E-value=0.26  Score=41.27  Aligned_cols=38  Identities=21%  Similarity=0.104  Sum_probs=24.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|++|.++........++..+++|++|+..
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls  186 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS  186 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECC
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECC
Confidence            46677777777777766544444456667777777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=87.80  E-value=0.53  Score=35.87  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=19.2

Q ss_pred             CCCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++... .+-..+|..+|+|++|+.
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  291 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL  291 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence            556666666666665421 111224555666666664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=87.74  E-value=0.12  Score=41.13  Aligned_cols=14  Identities=36%  Similarity=0.605  Sum_probs=6.5

Q ss_pred             CCCCceEeCCCCCC
Q psy8459           3 LTNLKHVDLFNNDV   16 (106)
Q Consensus         3 L~~L~~L~L~gNPV   16 (106)
                      +++|++|+|.+|++
T Consensus       448 l~~L~~L~L~~n~l  461 (606)
T 3t6q_A          448 LPALQHLNLQGNHF  461 (606)
T ss_dssp             CTTCCEEECTTCBC
T ss_pred             CCCCCEEECCCCCC
Confidence            34444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.37  E-value=0.27  Score=39.28  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=17.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|++|.++..+.-    |..+|+|++|+.
T Consensus       190 l~~L~~L~Ls~N~l~~~~~~----~~~l~~L~~L~L  221 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISL  221 (487)
T ss_dssp             CTTCCEEECCSSCCCEECGG----GGGGTTCSEEEC
T ss_pred             CCCCCEEECCCCCCCCCCHh----HcCCCCccEEEe
Confidence            55666666666666554331    445566666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=87.24  E-value=0.13  Score=40.50  Aligned_cols=15  Identities=20%  Similarity=0.441  Sum_probs=8.4

Q ss_pred             CCCCceEeCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVT   17 (106)
Q Consensus         3 L~~L~~L~L~gNPV~   17 (106)
                      ||+|++|.|.+|.++
T Consensus       251 ~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             CTTCCEEEEESCTTH
T ss_pred             CCCcCEEeCCCCCCc
Confidence            455555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=86.98  E-value=0.39  Score=37.15  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+   ...|..+++|++|+.
T Consensus       150 ~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          150 GLNSLEQLTLEKCNLTSIP---TEALSHLHGLIVLRL  183 (477)
T ss_dssp             TCTTCCEEEEESCCCSSCC---HHHHTTCTTCCEEEE
T ss_pred             CCCCCCEEECCCCcCcccC---hhHhcccCCCcEEeC
Confidence            3455666666666655543   235666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=86.89  E-value=0.74  Score=35.04  Aligned_cols=35  Identities=14%  Similarity=-0.078  Sum_probs=17.2

Q ss_pred             CCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459           4 TNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG   38 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg   38 (106)
                      ++|++|+|.+|.++... .+-...|..+|+|++|+.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence            35555555555554421 122234555666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=86.75  E-value=0.95  Score=35.63  Aligned_cols=38  Identities=16%  Similarity=0.134  Sum_probs=18.1

Q ss_pred             CCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecCcc
Q psy8459           3 LTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +++|++|+|.+|.++.. ...=..++..+|+|++|+...
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence            34555555555555421 111233555666666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=86.70  E-value=0.21  Score=42.29  Aligned_cols=34  Identities=35%  Similarity=0.316  Sum_probs=26.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.++..+.    .|..|++|++|+..
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVE  324 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECT
T ss_pred             CCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCC
Confidence            46788888888888887765    26778888888753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=86.55  E-value=0.5  Score=36.75  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=19.3

Q ss_pred             CCCCceEeCCCCCCCChhh-hHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIEN-YREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~-YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.|+...- .=..++..+|+|++||.
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL  246 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence            4566666666666654321 12223445677777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=86.48  E-value=0.15  Score=36.01  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=6.8

Q ss_pred             CCCCceEeCCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~   18 (106)
                      |++|++|+|.+|.++.
T Consensus       104 l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             CTTCCEEEEEEECCCS
T ss_pred             CCCCCEEeCCCCCCcc
Confidence            3444444444444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=86.40  E-value=0.24  Score=38.94  Aligned_cols=14  Identities=7%  Similarity=0.254  Sum_probs=6.7

Q ss_pred             CCCCceEeCCCCCC
Q psy8459           3 LTNLKHVDLFNNDV   16 (106)
Q Consensus         3 L~~L~~L~L~gNPV   16 (106)
                      |++|+.|+|.+|++
T Consensus       480 ~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          480 CDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTTCCEEEEESCSC
T ss_pred             CCCcCEEECcCCCC
Confidence            34444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=86.37  E-value=0.12  Score=39.09  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|+.|+|++|.|+..+..   +|..|++|+.|..
T Consensus       200 ~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~  233 (350)
T 4ay9_X          200 GASGPVILDISRTRIHSLPSY---GLENLKKLRARST  233 (350)
T ss_dssp             TEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTC
T ss_pred             cCcccchhhcCCCCcCccChh---hhccchHhhhccC
Confidence            567899999999999887652   3444555544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=86.06  E-value=0.36  Score=40.53  Aligned_cols=18  Identities=17%  Similarity=0.405  Sum_probs=8.6

Q ss_pred             CCCCceEeCCCCCCCChh
Q psy8459           3 LTNLKHVDLFNNDVTTIE   20 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~   20 (106)
                      +++|++|+|++|.++..+
T Consensus        80 l~~L~~L~Ls~N~l~~lp   97 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLP   97 (622)
T ss_dssp             CTTCCEEEECSCCCSCCC
T ss_pred             CCCCCEEEcCCCcCCcCC
Confidence            344555555555554433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=85.79  E-value=0.29  Score=39.60  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=16.2

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.++....   ..|..|++|++|+.
T Consensus        48 l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L   80 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNL   80 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCT---THHHHCTTCCEEEC
T ss_pred             CCcCcEEECCCCccCccCH---HHHhcccCcCEEEC
Confidence            4455555555555544311   23455555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=85.71  E-value=0.43  Score=37.95  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=17.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++....   ..|..+|+|++|+.
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSI  332 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEEC
T ss_pred             ccccCCEEECccCCcCcCch---hhhhccCcCCEEEC
Confidence            34566666666666654321   23445555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=85.67  E-value=0.43  Score=39.22  Aligned_cols=33  Identities=21%  Similarity=0.070  Sum_probs=20.5

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++..+.    .|..+++|++|+.
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~----~~~~l~~L~~L~L  543 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPT----QPLNSSTLKGFGI  543 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCC----GGGGCSSCCEEEC
T ss_pred             cCCCcCEEECCCCCCCCcCh----hhhcCCCCCEEEC
Confidence            46677777777777765433    2445666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=85.03  E-value=0.42  Score=38.64  Aligned_cols=8  Identities=50%  Similarity=0.625  Sum_probs=3.2

Q ss_pred             CCCCceec
Q psy8459          30 LPNLKYLD   37 (106)
Q Consensus        30 LPqLkyLD   37 (106)
                      +|+|++|+
T Consensus       608 ~~~L~~l~  615 (680)
T 1ziw_A          608 FRNLTELD  615 (680)
T ss_dssp             HTTCSEEE
T ss_pred             ccccCEEE
Confidence            34444333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=84.96  E-value=0.56  Score=39.37  Aligned_cols=32  Identities=13%  Similarity=0.205  Sum_probs=20.7

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++..+.    .|..||+|++|+.
T Consensus       260 ~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L  291 (622)
T 3g06_A          260 PSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNL  291 (622)
T ss_dssp             CTTCCEEECCSSCCCSCCG----GGGGSCTTCEEEC
T ss_pred             cccCcEEeCCCCCCCcCCH----HHhhccccCEEEe
Confidence            4566677777777665543    3566777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=84.95  E-value=0.31  Score=35.36  Aligned_cols=32  Identities=28%  Similarity=0.254  Sum_probs=14.3

Q ss_pred             CCCCceEeCCCCC-CCChhhhHHHHHHHCCCCc
Q psy8459           3 LTNLKHVDLFNND-VTTIENYREKVFELLPNLK   34 (106)
Q Consensus         3 L~~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLk   34 (106)
                      |++|++|+|++|| |+...--..++-++||+|+
T Consensus       138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            4455555555544 3333223344444555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=84.37  E-value=0.14  Score=38.58  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++|++|+|.+|.|+..+.   .+|..|++|++|+..
T Consensus        30 ~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls   62 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEIS   62 (350)
T ss_dssp             TTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEE
T ss_pred             CCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECc
Confidence            467777777777776532   256677777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=83.96  E-value=1.1  Score=33.61  Aligned_cols=13  Identities=23%  Similarity=0.330  Sum_probs=5.2

Q ss_pred             CCCceEeCCCCCC
Q psy8459           4 TNLKHVDLFNNDV   16 (106)
Q Consensus         4 ~~L~~L~L~gNPV   16 (106)
                      ++|++|+|.+|.+
T Consensus        80 ~~L~~L~Ls~n~l   92 (362)
T 3goz_A           80 ANVTSLNLSGNFL   92 (362)
T ss_dssp             TTCCEEECCSSCG
T ss_pred             CCccEEECcCCcC
Confidence            3344444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=83.96  E-value=1.4  Score=34.53  Aligned_cols=14  Identities=36%  Similarity=0.282  Sum_probs=8.6

Q ss_pred             HHHHCCCCceecCc
Q psy8459          26 VFELLPNLKYLDGF   39 (106)
Q Consensus        26 V~~~LPqLkyLDg~   39 (106)
                      ++..+|+|++|+..
T Consensus       206 l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          206 LVTRCPNLKSLKLN  219 (594)
T ss_dssp             HHHHCTTCCEEECC
T ss_pred             HHHhCCCCcEEecC
Confidence            44556777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=83.94  E-value=0.3  Score=41.35  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=16.5

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.++...   ...|..|++|++|+.
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L  104 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLH---PDAFQGLFHLFELRL  104 (844)
T ss_dssp             SCTTCCEEECTTCCCCEEC---TTSSCSCSSCCCEEC
T ss_pred             CCCCCCEEECCCCcCcccC---HhHccCCcccCEeeC
Confidence            3455566666655554431   113444555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=83.84  E-value=0.87  Score=34.27  Aligned_cols=14  Identities=14%  Similarity=0.264  Sum_probs=7.0

Q ss_pred             CCceEeCCCCCCCC
Q psy8459           5 NLKHVDLFNNDVTT   18 (106)
Q Consensus         5 ~L~~L~L~gNPV~~   18 (106)
                      +|++|+|++|.++.
T Consensus        52 ~L~~L~Ls~N~l~~   65 (362)
T 3goz_A           52 SVTSLNLSGNSLGF   65 (362)
T ss_dssp             TCCEEECCSSCGGG
T ss_pred             ceeEEECcCCCCCH
Confidence            45555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=83.69  E-value=0.76  Score=35.71  Aligned_cols=15  Identities=27%  Similarity=0.386  Sum_probs=7.7

Q ss_pred             CCCceEeCCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVTT   18 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~   18 (106)
                      ++|++|+|.+|.|+.
T Consensus       155 ~~L~~L~Ls~n~l~~  169 (372)
T 3un9_A          155 CQITTLRLSNNPLTA  169 (372)
T ss_dssp             CCCCEEECCSSCCHH
T ss_pred             CccceeeCCCCCCCh
Confidence            445555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=82.39  E-value=1.1  Score=31.11  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=16.3

Q ss_pred             CCCceEeC--CCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459           4 TNLKHVDL--FNNDVTTIE-NYREKVFELLPNLKYLDG   38 (106)
Q Consensus         4 ~~L~~L~L--~gNPV~~~~-~YR~~V~~~LPqLkyLDg   38 (106)
                      ++|++|+|  .+|+|.... ..=..++...++|++|+.
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L  158 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  158 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence            45555555  555554421 112224444455555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=82.29  E-value=0.85  Score=30.62  Aligned_cols=28  Identities=18%  Similarity=0.080  Sum_probs=22.1

Q ss_pred             CCCCCceEeCCCCCC---CChhhhHHHHHHH
Q psy8459           2 QLTNLKHVDLFNNDV---TTIENYREKVFEL   29 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV---~~~~~YR~~V~~~   29 (106)
                      .|++|++|.|.+||.   |....++.++...
T Consensus        53 ~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~   83 (130)
T 3rfe_A           53 ALPALRTAHLGANPWRCDCRLVPLRAWLAGR   83 (130)
T ss_dssp             GCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred             hccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence            478999999999999   4677777766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=82.21  E-value=0.43  Score=40.44  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=19.8

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++|.++...-  ...|..|++|++|+.
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSIDF  155 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEEE
T ss_pred             ccCCCCEEECCCCccccccc--chhHhhCCCCCEEEC
Confidence            45566666666666654311  013566777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=82.16  E-value=0.95  Score=37.86  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.++..   -...|..+++|++|+..
T Consensus       221 ~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          221 DCSALQHLDISGNKLSGD---FSRAISTCTELKLLNIS  255 (768)
T ss_dssp             TCCSCCEEECCSSCCCSC---HHHHTTTCSSCCEEECC
T ss_pred             cCCCCCEEECcCCcCCCc---ccHHHhcCCCCCEEECC
Confidence            456666666666666532   12255667777776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=81.62  E-value=0.62  Score=38.25  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA   41 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v   41 (106)
                      ++++|++|+|.+|.++..+.   .+|..+|+|++|+....
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~---~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPK---ELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCT---HHHHTTCCCSEEECCSS
T ss_pred             cCCCCCEEECcCCccCcCCH---HHHccCCCCCEEECCCC
Confidence            45688888888888886543   47778899999886543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=81.12  E-value=0.82  Score=40.12  Aligned_cols=33  Identities=18%  Similarity=0.074  Sum_probs=18.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++|.++..+.    .|..||+|++|+.
T Consensus       751 ~l~~L~~L~Ls~N~L~~lp~----~l~~L~~L~~L~L  783 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGI  783 (876)
T ss_dssp             TCTTCCEEECCSSCCSSCCC----GGGGCTTCCEEEC
T ss_pred             cCCCcCEEEeCCCCCCccch----hhhcCCCCCEEEC
Confidence            45666666666666655432    2345566666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
                L  ++L  N +   E  +E++ E+LP++  +
Sbjct: 87  VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 6e-07
 Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 3/37 (8%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              +    +D+    + ++        E L  L+   
Sbjct: 198 HGASGPVILDISRTRIHSLP---SYGLENLKKLRARS 231

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 8e-06
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 1   KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAPDSED 51
             L +L ++ +  N VT  ++YR  V   +P ++ LD    K  E  ++E 
Sbjct: 109 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK 159

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 4/35 (11%)

Query: 3  LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              + +DL    +  IEN    +   L     +D
Sbjct: 17 AVRDRELDLRGYKIPVIEN----LGATLDQFDAID 47

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 2   QLTNLKHVDLFNNDVTTI----ENYREKVFELLPNLKYLDG 38
           +   L+ + L  N ++        Y   + E  P L  LDG
Sbjct: 113 KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDG 153

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L  +  +  F   VTTIE       + L NL  L+
Sbjct: 38 ADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLE 69

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 8e-05
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 5/36 (13%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            L NL  V L NN ++ +            NL  + 
Sbjct: 193 SLPNLIEVHLKNNQISDVSP-----LANTSNLFIVT 223

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 6e-05
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            LT L+++ L  N ++ +          L NL  L+
Sbjct: 176 GLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLE 206

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 32.7 bits (73), Expect = 0.004
 Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 1  KQLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
           +L ++  +   N+D+ +++       + LPN+  L
Sbjct: 43 NELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 73

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 4  TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
           +   +DL NN +T I+   +  F+ L NL  L 
Sbjct: 31 PDTALLDLQNNKITEIK---DGDFKNLKNLHTLI 61

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL 36
            LT L+ +D+ +N V+ I      V   L NL+ L
Sbjct: 170 NLTTLERLDISSNKVSDIS-----VLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.0 bits (79), Expect = 7e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 4   TNLKHVDLFNNDVTTI-------ENYREKVFELLPNLKYLDGFDAKNNEAPDSE 50
             L+ + L  N +            YR +V + LPNLK LDG     +E   + 
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN 193

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 7e-04
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            LT L+ +   NN V+ + +        L N+ +L 
Sbjct: 327 SLTKLQRLFFANNKVSDVSS-----LANLTNINWLS 357

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 33.1 bits (74), Expect = 0.003
 Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)

Query: 2   QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
            LTN+  +   +N ++ +          L  +  L 
Sbjct: 349 NLTNINWLSAGHNQISDLTP-----LANLTRITQLG 379

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 7/35 (20%)

Query: 3   LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD 37
              L+ +    N +  +        EL  NLK L 
Sbjct: 303 PPRLERLIASFNHLAEVP-------ELPQNLKQLH 330

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.66
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.01
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	95.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	95.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	95.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	95.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	95.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	94.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	93.33
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	93.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	93.05
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	93.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	92.91
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	92.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	92.32
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	91.97
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	91.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	90.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	89.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	89.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	89.41
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	89.33
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	89.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	88.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	88.19
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	87.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	86.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	86.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	85.5
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	83.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	83.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	82.91

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3e-11  Score=83.96  Aligned_cols=46  Identities=28%  Similarity=0.339  Sum_probs=43.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKNNEAP   47 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~~E~~   47 (106)
                      +|++|++|+|.+|||+..++||.++|+.||+|++|||..|+..||.
T Consensus       110 ~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~er~  155 (162)
T d1a9na_         110 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ  155 (162)
T ss_dssp             GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred             cccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHHHH
Confidence            5899999999999999999999999999999999999999987764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.66  E-value=7.4e-09  Score=73.48  Aligned_cols=48  Identities=33%  Similarity=0.472  Sum_probs=42.9

Q ss_pred             CCCCCCceEeCCCCCCCC-------hhhhHHHHHHHCCCCceecCccCCCCCCCC
Q psy8459           1 KQLTNLKHVDLFNNDVTT-------IENYREKVFELLPNLKYLDGFDAKNNEAPD   48 (106)
Q Consensus         1 k~L~~L~~L~L~gNPV~~-------~~~YR~~V~~~LPqLkyLDg~~v~~~E~~d   48 (106)
                      ++|++|+.|+|.+|||+.       ...||..|++.||+|++|||.+|+..||..
T Consensus       137 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~  191 (198)
T d1m9la_         137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQ  191 (198)
T ss_dssp             TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTH
T ss_pred             cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHH
Confidence            368999999999999854       367999999999999999999999999864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2e-08  Score=69.01  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=36.4

Q ss_pred             CCCCceEeCCCCCCCC----hhhhHHHHHHHCCCCceecCccCCC
Q psy8459           3 LTNLKHVDLFNNDVTT----IENYREKVFELLPNLKYLDGFDAKN   43 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~----~~~YR~~V~~~LPqLkyLDg~~v~~   43 (106)
                      +.+|+.|+|.+|||+.    ..+||.+|+++||+|++|||..|+.
T Consensus       114 ~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~v~p  158 (162)
T d1koha1         114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPP  158 (162)
T ss_dssp             TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEECCC
T ss_pred             ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCCCcC
Confidence            4578999999999985    4789999999999999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=1.4e-06  Score=57.45  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCcee
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYL   36 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyL   36 (106)
                      +|++|++|+|.+|||+..++||..++..+|+|+.|
T Consensus        88 ~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          88 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            57889999999999999999999999999999876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.0016  Score=42.06  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=23.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.|+..+...  .+..+|+|++|+.
T Consensus        63 ~l~~L~~L~l~~N~i~~~~~~~--~l~~~~~L~~L~l   97 (124)
T d1dcea3          63 NLPRLQELLLCNNRLQQSAAIQ--PLVSCPRLVLLNL   97 (124)
T ss_dssp             TCSSCCEEECCSSCCCSSSTTG--GGGGCTTCCEEEC
T ss_pred             cccccCeEECCCCccCCCCCch--hhcCCCCCCEEEC
Confidence            5667777777777777665432  4566777777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.77  E-value=0.002  Score=44.18  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=25.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|+.|+|.+|.++..+.     |..||+|++|+-..
T Consensus       171 ~l~~L~~L~Ls~n~l~~l~~-----l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKN  204 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTT
T ss_pred             ccccceecccCCCccCCChh-----hcCCCCCCEEECcC
Confidence            57788888888888877654     56778888887643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.002  Score=43.16  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=26.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|++|.|+...... .++..||+|++|+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~-~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLS   99 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGG-THHHHSTTCCCCCCT
T ss_pred             hCCCCCEeeCCCccccCCchhH-HHHhhCCcccccccc
Confidence            3678888888888888765543 256778888888754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.62  E-value=0.0032  Score=43.14  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=13.7

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      |++|++|+|++|.|+..+.     |..||+|++|+
T Consensus       177 l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~  206 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISDLRA-----LAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCBCGG-----GTTCTTCSEEE
T ss_pred             CCCCCEEECCCCCCCCChh-----hcCCCCCCEEE
Confidence            4445555555554444321     34444555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.53  E-value=0.0041  Score=44.30  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .|++|++|+|++|.|+..+.     |..||+|++|+..
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~~-----l~~L~~L~~L~L~   96 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMN   96 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECC
T ss_pred             cCCCCCEEeCcCCcCCCCcc-----ccCCccccccccc
Confidence            35666666666666666542     5556666666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.41  E-value=0.0054  Score=41.91  Aligned_cols=32  Identities=28%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|+|+..+.     |..||+|++|+.
T Consensus       193 ~l~~L~~L~Ls~N~lt~i~~-----l~~l~~L~~L~l  224 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTL  224 (227)
T ss_dssp             GCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEE
T ss_pred             CCCCCCEEECcCCcCCCCcc-----cccCCCCCEEEe
Confidence            46677777777777666543     556677776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.35  E-value=0.0049  Score=41.72  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=24.4

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA   41 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v   41 (106)
                      +|++|++|+|++|.++..+.     |..||+|++|+....
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~-----l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNN   94 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS
T ss_pred             cCCCcCcCccccccccCccc-----ccCCccccccccccc
Confidence            46777888888887777643     567777777766443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0067  Score=40.59  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|.+|.|+..+.+.  .|..||+|++|+.
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~--~l~~l~~L~~L~l  119 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLD--PLASLKSLTYLCI  119 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGG--GGGGCTTCCEEEC
T ss_pred             ccccccceecccccccccccc--ccccccccchhhc
Confidence            556666666666666655442  3556666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.09  E-value=0.0057  Score=43.49  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=26.1

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .|++|++|+|.+|+++..+.     |..||+|++|+..
T Consensus       327 ~l~~L~~L~L~~n~l~~l~~-----l~~l~~L~~L~l~  359 (384)
T d2omza2         327 SLTKLQRLFFANNKVSDVSS-----LANLTNINWLSAG  359 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECC
T ss_pred             cCCCCCEEECCCCCCCCChh-----HcCCCCCCEEECC
Confidence            57888999999998887653     5678899888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.44  E-value=0.012  Score=40.12  Aligned_cols=33  Identities=30%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .|++|++|+|.+|.|+..+.     +..|++|++|+..
T Consensus        66 ~l~~L~~L~L~~n~i~~l~~-----~~~l~~L~~L~l~   98 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLD   98 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECC
T ss_pred             hCCCCCEEeCCCccccCccc-----cccCccccccccc
Confidence            35667777777776666543     3456666666643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.0042  Score=42.32  Aligned_cols=37  Identities=14%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDA   41 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v   41 (106)
                      +|++|+.|+|.+|+++..+.+   .|..|++|++|+....
T Consensus       199 ~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         199 GASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNL  235 (242)
T ss_dssp             TSCCCSEEECTTSCCCCCCSS---SCTTCCEEESSSEESS
T ss_pred             CCCCCCEEECCCCcCCccCHH---HHcCCcccccCcCCCC
Confidence            578999999999999887653   5788888888876544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.0069  Score=40.30  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|+.|+|++|.|+..+.   ..|..+|+|++|+...
T Consensus        54 ~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          54 GLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCS
T ss_pred             cccccCcceeeccccCCccc---ccccccccccceeccC
Confidence            46788888888888777533   3677788888887643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.33  E-value=0.011  Score=39.58  Aligned_cols=15  Identities=13%  Similarity=0.383  Sum_probs=6.0

Q ss_pred             CCCceEeCCCCCCCC
Q psy8459           4 TNLKHVDLFNNDVTT   18 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~   18 (106)
                      ++|++|+|++|.++.
T Consensus        78 ~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          78 SHIQELQLGENKIKE   92 (192)
T ss_dssp             TTCCEEECCSCCCCE
T ss_pred             cccceeeeccccccc
Confidence            334444444444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.25  E-value=0.014  Score=41.05  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=26.9

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      ++++|+.|+|.+|.++..+.    -|..+|+|++|+...
T Consensus       217 ~l~~L~~L~L~~N~L~~lp~----~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         217 NTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHN  251 (305)
T ss_dssp             GSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCS
T ss_pred             ccccceeeeccccccccccc----ccccccCCCEEECCC
Confidence            46788999999998887753    367788888887654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.038  Score=39.25  Aligned_cols=12  Identities=17%  Similarity=0.254  Sum_probs=5.7

Q ss_pred             HHHHCCCCceec
Q psy8459          26 VFELLPNLKYLD   37 (106)
Q Consensus        26 V~~~LPqLkyLD   37 (106)
                      ++..+|+|++|+
T Consensus       116 l~~~~~~L~~L~  127 (284)
T d2astb2         116 LLSSCSRLDELN  127 (284)
T ss_dssp             HHHHCTTCCEEE
T ss_pred             hhHHHHhccccc
Confidence            334455555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.011  Score=41.35  Aligned_cols=16  Identities=25%  Similarity=0.391  Sum_probs=7.5

Q ss_pred             CCCCceEeCCCCCCCC
Q psy8459           3 LTNLKHVDLFNNDVTT   18 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~   18 (106)
                      |++|++|+|.+|.|+.
T Consensus        54 l~~L~~L~L~~N~l~~   69 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTK   69 (266)
T ss_dssp             CTTCCEEECTTSCCCE
T ss_pred             cccccccccccccccc
Confidence            4444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.91  E-value=0.0095  Score=40.02  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=24.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|.+|.|+..+.   .+|..+|+|++|+.
T Consensus       100 ~l~~L~~L~L~~N~l~~i~~---~~f~~l~~L~~l~L  133 (192)
T d1w8aa_         100 GLHQLKTLNLYDNQISCVMP---GSFEHLNSLTSLNL  133 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECT---TSSTTCTTCCEEEC
T ss_pred             CCCcccccccCCccccccCH---HHhcCCcccccccc
Confidence            57788888888888877533   25667778887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=92.63  E-value=0.015  Score=39.86  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=18.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      |++|++|+|++|.|+..++     |..|++|++|+.
T Consensus        47 L~~L~~L~Ls~n~I~~i~~-----l~~l~~L~~L~L   77 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISS-----LSGMENLRILSL   77 (198)
T ss_dssp             TTTCCEEECSEEEESCCCC-----HHHHTTCCEEEC
T ss_pred             ccccceeECcccCCCCccc-----ccCCccccChhh
Confidence            5566666666666666543     445666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.08  Score=37.48  Aligned_cols=36  Identities=17%  Similarity=0.073  Sum_probs=25.0

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      +|++|++|.|.+|+++..   -...|+.+|+|++|+...
T Consensus        69 ~c~~L~~L~L~~~~l~~~---~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDP---IVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             TBCCCSEEECTTCBCCHH---HHHHHTTCTTCSEEECTT
T ss_pred             hCCCcccccccccCCCcH---HHHHHhcCCCCcCccccc
Confidence            578888888888876542   223466788888887644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.05  Score=37.87  Aligned_cols=38  Identities=26%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCccCCC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGFDAKN   43 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~~v~~   43 (106)
                      .|++|++|+|++|++...+.    +|..+|+|++|+.....-
T Consensus        75 ~l~~L~~L~Ls~N~l~~~~~----~~~~l~~L~~L~l~~~~~  112 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRL  112 (266)
T ss_dssp             CCTTCCEEECCSSCCSSCCC----CTTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccc----cccccccccccccccccc
Confidence            58899999999999987644    577899999998754433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=91.88  E-value=0.07  Score=35.69  Aligned_cols=33  Identities=33%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      +|++|++|+|.+|.+...+.     |..+++|++|+..
T Consensus        82 ~l~~L~~L~l~~n~~~~~~~-----l~~l~~L~~L~l~  114 (199)
T d2omxa2          82 NLTKLVDILMNNNQIADITP-----LANLTNLTGLTLF  114 (199)
T ss_dssp             TCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEECC
T ss_pred             CCcccccccccccccccccc-----ccccccccccccc
Confidence            56778888888887777653     4456666666543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=90.00  E-value=0.08  Score=37.17  Aligned_cols=33  Identities=30%  Similarity=0.282  Sum_probs=25.3

Q ss_pred             CCCCCceEeCCCCCCC-ChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVT-TIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~-~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      .+++|+.|+|++|.++ ..|.    .|..||+|++|+-
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~----~l~~L~~L~~L~L  275 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNV  275 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEEC
T ss_pred             cccccccccCccCeecccCCh----HHhCCCCCCEEEC
Confidence            4678888999888887 5554    4677888888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=89.80  E-value=0.079  Score=36.48  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|.++..+.       .+|+|++|+-
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~-------~~~~L~~L~L  311 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA-------LPPRLERLIA  311 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC-------CCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcccc-------ccCCCCEEEC
Confidence            4567777777777766542       3556665543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.11  Score=36.02  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=23.5

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      ++++|++|+|++|.+...+.   .+|..+++|++|+.
T Consensus       199 ~l~~L~~L~l~~N~i~~~~~---~~~~~~~~L~~L~l  232 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALPT---EALAPLRALQYLRL  232 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEEEC
T ss_pred             hhhhcccccccccccccccc---cccccccccCEEEe
Confidence            46677777777777766543   36777777877764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.044  Score=36.94  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=25.7

Q ss_pred             CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++|++|+|++|.|+..+.   ..|..+|+|++|+..
T Consensus        29 ~~l~~L~Ls~n~i~~l~~---~~f~~l~~L~~L~ls   61 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEIS   61 (242)
T ss_dssp             SCCSEEEEESCCCCEECT---TTTTTCTTCCEEEEE
T ss_pred             CCCCEEECcCCcCCccCh---hHhhccchhhhhhhc
Confidence            378999999999987654   257788999988853

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.18  Score=35.57  Aligned_cols=36  Identities=19%  Similarity=0.056  Sum_probs=21.6

Q ss_pred             CCCCceEeCCCCCCCChh-hhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTIE-NYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~-~YR~~V~~~LPqLkyLDg   38 (106)
                      .++|++|+|.+|.|+... ..=...+..+|+|++||.
T Consensus       368 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L  404 (460)
T d1z7xw1         368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  404 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             cCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEEC
Confidence            456777777777776521 111224556778887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.21  E-value=0.063  Score=37.51  Aligned_cols=33  Identities=33%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             CCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           4 TNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         4 ~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      ++|++|+|++|.|+..+.   ..|..+++|++|+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~---~~f~~l~~L~~L~l~   63 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKD---GDFKNLKNLHTLILI   63 (305)
T ss_dssp             TTCCEEECCSSCCCCBCT---TTTTTCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcCh---hHhhccccccccccc
Confidence            456666666666666532   135556666666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.80  E-value=0.12  Score=36.85  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             CCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecC
Q psy8459           3 LTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg   38 (106)
                      +++|++|+|.+|+|+.. ...=..++..+|+|++|+.
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhh
Confidence            45666666666666442 1122234556666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.19  E-value=0.33  Score=31.41  Aligned_cols=39  Identities=13%  Similarity=0.057  Sum_probs=22.9

Q ss_pred             CCCCCceEeCCCCCCCCh-hhhHHHHHHHCCCCceecCcc
Q psy8459           2 QLTNLKHVDLFNNDVTTI-ENYREKVFELLPNLKYLDGFD   40 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~-~~YR~~V~~~LPqLkyLDg~~   40 (106)
                      .+++|++|+|++|.++.. ..+=..++...++|++|+...
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~   83 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES   83 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcc
Confidence            456777777777777553 222233456667777766543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=87.42  E-value=0.065  Score=37.68  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=18.9

Q ss_pred             CCCCCceEeCCC-CCCC-ChhhhHHHHHHHCCCCceecC
Q psy8459           2 QLTNLKHVDLFN-NDVT-TIENYREKVFELLPNLKYLDG   38 (106)
Q Consensus         2 ~L~~L~~L~L~g-NPV~-~~~~YR~~V~~~LPqLkyLDg   38 (106)
                      +|++|++|+|++ |-++ ..|.    -|..|++|++|+-
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~L  108 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYI  108 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEE
T ss_pred             cCcccccccccccccccccccc----ccccccccchhhh
Confidence            466677777764 4443 3332    3556667776664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=0.14  Score=36.20  Aligned_cols=17  Identities=18%  Similarity=0.241  Sum_probs=10.3

Q ss_pred             CCCCCceEeCCCCCCCC
Q psy8459           2 QLTNLKHVDLFNNDVTT   18 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~   18 (106)
                      .+++|++|+|++|+|+.
T Consensus        53 ~~~~L~~LdLs~N~i~~   69 (460)
T d1z7xw1          53 VNPALAELNLRSNELGD   69 (460)
T ss_dssp             TCTTCCEEECTTCCCHH
T ss_pred             cCCCCCEEECcCCcCCh
Confidence            35566666666666643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.077  Score=34.89  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             CCCCCceEeCCCCC-CCChhhhHHHHHHHCCCCceecCccC
Q psy8459           2 QLTNLKHVDLFNND-VTTIENYREKVFELLPNLKYLDGFDA   41 (106)
Q Consensus         2 ~L~~L~~L~L~gNP-V~~~~~YR~~V~~~LPqLkyLDg~~v   41 (106)
                      ++++|+.|.|.+|+ ++..+.   ..|..||+|+.|+...-
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~---~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECG---GGSCSCCCCSEEECCSS
T ss_pred             CccccCeeecCCCccccccCc---hhhccccccCcceeecc
Confidence            57899999998776 776543   25778999999986543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=85.50  E-value=0.23  Score=33.95  Aligned_cols=31  Identities=23%  Similarity=0.123  Sum_probs=23.7

Q ss_pred             CCCCCceEeCCCCCCCChhhhHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLDg~   39 (106)
                      .+++|++|.|.+|.++..+.       .+++|++|+..
T Consensus       302 ~~~~L~~L~L~~N~L~~l~~-------~~~~L~~L~L~  332 (353)
T d1jl5a_         302 LPPRLERLIASFNHLAEVPE-------LPQNLKQLHVE  332 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECC
T ss_pred             ccCCCCEEECCCCcCCcccc-------ccCCCCEEECc
Confidence            36789999999998888763       36688888753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.61  E-value=0.54  Score=30.72  Aligned_cols=11  Identities=18%  Similarity=0.262  Sum_probs=4.3

Q ss_pred             CceEeCCCCCC
Q psy8459           6 LKHVDLFNNDV   16 (106)
Q Consensus         6 L~~L~L~gNPV   16 (106)
                      |++|+|.+|+|
T Consensus        74 L~~L~L~~n~i   84 (167)
T d1pgva_          74 LRVLNVESNFL   84 (167)
T ss_dssp             CCEEECCSSBC
T ss_pred             ccceeeehhhc
Confidence            33333333333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.23  E-value=0.99  Score=31.72  Aligned_cols=38  Identities=16%  Similarity=0.038  Sum_probs=24.1

Q ss_pred             CCCCCceEeCCCCCCCChhh-hHHHHHHHCCCCceecCc
Q psy8459           2 QLTNLKHVDLFNNDVTTIEN-YREKVFELLPNLKYLDGF   39 (106)
Q Consensus         2 ~L~~L~~L~L~gNPV~~~~~-YR~~V~~~LPqLkyLDg~   39 (106)
                      .+++|++|+|.+|.+....- .=..++..+|+|+.|+..
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  129 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH  129 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecc
Confidence            46778888888887765321 112245667888877653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.14  Score=35.49  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=14.2

Q ss_pred             CCCCceEeCCCCCCCChhhhHHHHHHHCCCCceec
Q psy8459           3 LTNLKHVDLFNNDVTTIENYREKVFELLPNLKYLD   37 (106)
Q Consensus         3 L~~L~~L~L~gNPV~~~~~YR~~V~~~LPqLkyLD   37 (106)
                      +++|++|+|.+|.+...+.   .+|..+++|++|+
T Consensus       152 ~~~L~~L~l~~N~l~~l~~---~~f~~l~~L~~l~  183 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPE---RAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECCSSCCCEECT---TTTTTCTTCCEEE
T ss_pred             ccchhhcccccCcccccch---hhhccccccchhh
Confidence            3445555555555543322   1334444444443