Psyllid ID: psy8462

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MDTLPAEMGLLPKGLTNPQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDWPQYHY
ccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccHHHHHccccccccccEEEEHHHHHccHHHHHcccHHHHcccccccHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccHHHHcccccHHHHHHHHHHHHHccccccEEEEEcccccEEEEccccccccc
cccccHHHcccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHccHHHHcccccEEcEcccccHHHHHHHHHHHHHcccccccHccccccHHHHHEHHHHHHHHHHccEEEEEEcccccccEEEEEEcccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEHHHHHHHHHHcccHHHccccccEEEEEEccccEEEcccccccccc
mdtlpaemgllpkgltnpqvnhssksregsgepnydaleanpfqtkKQRKEAEVKALLEKIQpemisldpqvitevHVPTLKEKIEARNKLlvsnpgfalqfhfkpwwfNELQIFRSKYHKQCLPVVTVLLgsrnnsnqihlhsdsaradkptdisfdipkvqkltpgapkwaNYVKGVVSIFNDDYEVSCKELDDIAHCaqslpgvlgcrmtgggfggCAIALVHTDHVNDIIAKVKAhcvsnptptffvsdayqgathvsledwpqyhy
mdtlpaemgllpkgltnpqvnhssksregsgepnydaleanpfqtkkqRKEAEVKALLEKIqpemisldpqviTEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQihlhsdsaradkptdISFDIPkvqkltpgapkwaNYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHvsledwpqyhy
MDTLPAEMGLLPKGLTNPQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTgggfggCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDWPQYHY
************************************************************IQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGS**********************SFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDW*****
***LPAEMGLLPKGLTNPQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDWP****
MDTLPAEMGLLPKGLTN***************PNYDALEANPFQT********VKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDWPQYHY
*DT*P*EMGLLPKGLTNPQVN***********PNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDWPQYHY
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MDTLPAEMGLLPKGLTNPQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEARNKLLVSNPGFALQFHFKPWWFNELQIFRSKYHKQCLPVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSLEDWPQYHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
Q9R0N0391 Galactokinase OS=Mus musc yes N/A 0.291 0.202 0.456 3e-13
Q9GKK4392 Galactokinase OS=Canis fa yes N/A 0.273 0.188 0.447 6e-13
Q9R7D7399 Galactokinase OS=Lactococ yes N/A 0.298 0.203 0.458 8e-13
Q9S6S2399 Galactokinase OS=Lactococ yes N/A 0.298 0.203 0.458 1e-12
O15213610 WD repeat-containing prot no N/A 0.287 0.127 0.461 1e-12
P51570392 Galactokinase OS=Homo sap no N/A 0.291 0.201 0.432 1e-12
Q0ST92387 Galactokinase OS=Clostrid yes N/A 0.195 0.136 0.622 2e-12
A6H768392 Galactokinase OS=Bos taur no N/A 0.273 0.188 0.447 3e-12
Q5TJE7612 WD repeat-containing prot no N/A 0.287 0.127 0.461 4e-12
Q03JS8388 Galactokinase OS=Streptoc yes N/A 0.269 0.188 0.48 4e-12
>sp|Q9R0N0|GALK1_MOUSE Galactokinase OS=Mus musculus GN=Galk1 PE=2 SV=1 Back     alignment and function desciption
 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 183 FNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCV 242
             DDYEVSC ELD +   A S+PGV G RMTGGGFGGC + L+       +I  ++    
Sbjct: 313 LRDDYEVSCPELDQLVEAALSVPGVYGSRMTGGGFGGCTVTLLEASVAPLVIDHIQEQ-- 370

Query: 243 SNPTPTFFVSDAYQGATHVSL 263
            + T TF++S A  GA  +SL
Sbjct: 371 YSGTATFYLSQAADGAQVLSL 391
Major enzyme for galactose metabolism.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6
>sp|Q9GKK4|GALK1_CANFA Galactokinase OS=Canis familiaris GN=GALK1 PE=2 SV=1 Back     alignment and function description
>sp|Q9R7D7|GAL1_LACLA Galactokinase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=galK PE=1 SV=1 Back     alignment and function description
>sp|Q9S6S2|GAL1_LACLM Galactokinase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|O15213|WDR46_HUMAN WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=3 Back     alignment and function description
>sp|P51570|GALK1_HUMAN Galactokinase OS=Homo sapiens GN=GALK1 PE=1 SV=1 Back     alignment and function description
>sp|Q0ST92|GAL1_CLOPS Galactokinase OS=Clostridium perfringens (strain SM101 / Type A) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|A6H768|GALK1_BOVIN Galactokinase OS=Bos taurus GN=GALK1 PE=2 SV=2 Back     alignment and function description
>sp|Q5TJE7|WDR46_CANFA WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1 Back     alignment and function description
>sp|Q03JS8|GAL1_STRTD Galactokinase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=galK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
350416219 503 PREDICTED: WD repeat-containing protein 0.317 0.170 0.619 6e-21
328777214 522 PREDICTED: WD repeat-containing protein 0.276 0.143 0.679 6e-20
340711447 509 PREDICTED: LOW QUALITY PROTEIN: WD repea 0.276 0.147 0.679 9e-20
380030043 506 PREDICTED: WD repeat-containing protein 0.276 0.148 0.666 1e-19
91077832 580 PREDICTED: similar to CG2260 CG2260-PA [ 0.250 0.117 0.691 6e-19
270001479 562 hypothetical protein TcasGA2_TC000313 [T 0.250 0.120 0.691 8e-19
383848501 532 PREDICTED: WD repeat-containing protein 0.217 0.110 0.779 1e-17
357612246 583 hypothetical protein KGM_13820 [Danaus p 0.250 0.116 0.661 1e-17
307190227 504 WD repeat-containing protein 46 [Campono 0.250 0.134 0.691 4e-17
332028317 532 WD repeat-containing protein 46 [Acromyr 0.250 0.127 0.691 5e-17
>gi|350416219|ref|XP_003490878.1| PREDICTED: WD repeat-containing protein 46-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 66/92 (71%), Gaps = 6/92 (6%)

Query: 18  PQVNHSSKSR---EGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVIT 74
           P + H +KS     GSGEPN+DALE NPFQTK QR+EAEVKALL+KIQPE+I L+P  IT
Sbjct: 348 PYLRHRTKSSVTIPGSGEPNFDALECNPFQTKTQRREAEVKALLDKIQPELICLEPLAIT 407

Query: 75  EVHVPTLKEKIEARNKLLVSNPGFALQFHFKP 106
           EV VPTLK+K+EA  KLL   P       FKP
Sbjct: 408 EVDVPTLKDKVEAEKKLLYLKPK---NIDFKP 436

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328777214|ref|XP_001120711.2| PREDICTED: WD repeat-containing protein 46-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340711447|ref|XP_003394287.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 46-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380030043|ref|XP_003698668.1| PREDICTED: WD repeat-containing protein 46-like [Apis florea] Back     alignment and taxonomy information
>gi|91077832|ref|XP_971200.1| PREDICTED: similar to CG2260 CG2260-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270001479|gb|EEZ97926.1| hypothetical protein TcasGA2_TC000313 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383848501|ref|XP_003699888.1| PREDICTED: WD repeat-containing protein 46-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|357612246|gb|EHJ67876.1| hypothetical protein KGM_13820 [Danaus plexippus] Back     alignment and taxonomy information
>gi|307190227|gb|EFN74338.1| WD repeat-containing protein 46 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332028317|gb|EGI68364.1| WD repeat-containing protein 46 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
FB|FBgn0030000609 CG2260 [Drosophila melanogaste 0.232 0.103 0.682 9.7e-18
UNIPROTKB|B4E1G6 422 GALK1 "Galactokinase 1" [Homo 0.442 0.284 0.313 1.9e-16
UNIPROTKB|Q9GKK4392 GALK1 "Galactokinase" [Canis l 0.265 0.183 0.378 2.1e-16
UNIPROTKB|P51570 392 GALK1 "Galactokinase" [Homo sa 0.221 0.153 0.426 3.5e-16
MGI|MGI:95730391 Galk1 "galactokinase 1" [Mus m 0.284 0.196 0.392 4.2e-16
RGD|1305375 392 Galk1 "galactokinase 1" [Rattu 0.221 0.153 0.426 3.3e-15
UNIPROTKB|A6H768392 GALK1 "Galactokinase" [Bos tau 0.265 0.183 0.378 4.8e-15
UNIPROTKB|G1K1R6392 GALK1 "Galactokinase" [Bos tau 0.265 0.183 0.378 4.8e-15
UNIPROTKB|F1RVY7420 GALK1 "Uncharacterized protein 0.265 0.171 0.378 1.3e-14
ZFIN|ZDB-GENE-041010-79 393 galk1 "galactokinase 1" [Danio 0.202 0.139 0.45 7.1e-14
FB|FBgn0030000 CG2260 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 225 (84.3 bits), Expect = 9.7e-18, P = 9.7e-18
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query:    29 GSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDPQVITEVHVPTLKEKIEAR 88
             GSGEPN+DA+E NP++T KQR+E EV ALLEKI PE+I+LDPQ IT V  PTL+EKI+A+
Sbjct:   459 GSGEPNFDAMEDNPYETSKQRREHEVHALLEKIPPELITLDPQEITGVDAPTLQEKIDAK 518

Query:    89 NKL 91
              KL
Sbjct:   519 RKL 521
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|B4E1G6 GALK1 "Galactokinase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKK4 GALK1 "Galactokinase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P51570 GALK1 "Galactokinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:95730 Galk1 "galactokinase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305375 Galk1 "galactokinase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6H768 GALK1 "Galactokinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G1K1R6 GALK1 "Galactokinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVY7 GALK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-79 galk1 "galactokinase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
pfam0814980 pfam08149, BING4CT, BING4CT (NUC141) domain 6e-25
smart0103380 smart01033, BING4CT, BING4CT (NUC141) domain 2e-24
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 1e-23
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 1e-19
TIGR00131386 TIGR00131, gal_kin, galactokinase 1e-12
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 2e-11
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 2e-11
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 4e-11
PLN02521497 PLN02521, PLN02521, galactokinase 1e-09
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 7e-07
PLN02865423 PLN02865, PLN02865, galactokinase 7e-07
PTZ00290468 PTZ00290, PTZ00290, galactokinase; Provisional 1e-06
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 2e-06
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 5e-05
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 6e-05
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 4e-04
>gnl|CDD|149288 pfam08149, BING4CT, BING4CT (NUC141) domain Back     alignment and domain information 
 Score = 94.2 bits (235), Expect = 6e-25
 Identities = 32/42 (76%), Positives = 39/42 (92%)

Query: 29 GSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDP 70
          GSGEPN+D+LEANPF+TKKQR+E EV++LLEK+ PE ISLDP
Sbjct: 39 GSGEPNFDSLEANPFETKKQRREREVRSLLEKLPPETISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80
>gnl|CDD|198101 smart01033, BING4CT, BING4CT (NUC141) domain Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
PF0814980 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012 99.97
KOG1272|consensus545 99.94
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.88
PTZ00290468 galactokinase; Provisional 99.88
PLN02865423 galactokinase 99.84
PLN02521497 galactokinase 99.83
PRK05101382 galactokinase; Provisional 99.81
PRK00555363 galactokinase; Provisional 99.77
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.77
PRK05322387 galactokinase; Provisional 99.74
COG2605333 Predicted kinase related to galactokinase and meva 99.69
PRK03817351 galactokinase; Provisional 99.68
KOG0631|consensus489 99.68
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.54
PLN02677387 mevalonate kinase 99.51
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.5
KOG1511|consensus397 99.46
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.39
PRK03926302 mevalonate kinase; Provisional 99.39
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.32
PTZ00298328 mevalonate kinase; Provisional 99.28
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.04
PLN02451370 homoserine kinase 98.21
PRK01212301 homoserine kinase; Provisional 98.16
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 98.0
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 97.97
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 97.78
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.77
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 97.76
PRK01123282 shikimate kinase; Provisional 97.65
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.52
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.04
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.03
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 96.96
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.48
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.42
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.41
PTZ00299336 homoserine kinase; Provisional 96.11
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 95.63
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 95.45
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 94.37
KOG4644|consensus948 94.32
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 92.65
COG1907312 Predicted archaeal sugar kinases [General function 91.99
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 88.41
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information 
Probab=99.97  E-value=4.1e-32  Score=207.61  Aligned_cols=53  Identities=64%  Similarity=0.973  Sum_probs=51.7

Q ss_pred             CCCCcceeEecCCCCCCCcccCCCCCCChHHHhHHHHHHHHhhcCCCceeeCC
Q psy8462          18 PQVNHSSKSREGSGEPNYDALEANPFQTKKQRKEAEVKALLEKIQPEMISLDP   70 (271)
Q Consensus        18 ~~~~~~s~~vpg~g~~~~d~~~~np~~~~~~r~e~ev~~ll~k~~~~~i~l~~   70 (271)
                      .+.|||||||||||||||||+|+|||||+|||||+|||+||||||||||+|||
T Consensus        28 h~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP   80 (80)
T PF08149_consen   28 HSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP   80 (80)
T ss_pred             ccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence            46899999999999999999999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
>KOG1272|consensus Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>KOG0631|consensus Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>KOG1511|consensus Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4644|consensus Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1pie_A419 Crystal Structure Of Lactococcus Lactis Galactokina 7e-10
1wuu_A 399 Crystal Structure Of Human Galactokinase Complexed 2e-08
1wuu_A399 Crystal Structure Of Human Galactokinase Complexed 7e-05
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 Back     alignment and structure 
Iteration: 1

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVHTDHVNDI---IAKVKAHC 241
           DDYEV+  ELD +A  AQ   GVLG RMT      CAIALV  D+V+     + +V    
Sbjct: 338 DDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV 397
Query: 242 VSNPTPTFFVSDAYQGATHVSLE 264
           V  P  +F+V+    G+T + +E
Sbjct: 398 VGYP-ASFYVAQIGSGSTKLDVE 419
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With Mgamppnp And Galactose Length = 399 Back     alignment and structure
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With Mgamppnp And Galactose Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 2e-28
1wuu_A 399 Galactokinase; galactosemia, GHMP superfamily, tra 1e-09
1pie_A419 Galactokinase; galactose, galactosemia, transferas 2e-28
1pie_A 419 Galactokinase; galactose, galactosemia, transferas 1e-08
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 1e-25
2cz9_A 350 Probable galactokinase; structural genomics, NPPSF 4e-04
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 2e-19
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 5e-19
2a2c_A 478 N-acetylgalactosamine kinase; galactokinase, , tra 4e-06
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-17
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 3e-17
3v2u_C 520 Protein GAL3; rossmann fold, GHMP superfamily, tra 4e-06
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 6e-17
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 2e-14
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 8e-14
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
3k17_A365 LIN0012 protein; protein structure initiative II(P 1e-05
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
 Score =  111 bits (279), Expect = 2e-28
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
           DDYEVSC ELD +   A ++PGV G RMTGGGFGGC + L+        +  ++ H    
Sbjct: 323 DDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY--G 380

Query: 245 PTPTFFVSDAYQGATHVSL 263
            T TF++S A  GA  + L
Sbjct: 381 GTATFYLSQAADGAKVLCL 399
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.82
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.74
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.63
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.59
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.57
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.5
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.49
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.49
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.43
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.29
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.25
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.22
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.2
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.14
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.13
1h72_C296 HK, homoserine kinase; transferase, threonine bios 98.68
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 98.12
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.99
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.73
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 97.58
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 97.52
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.66
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 95.45
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 93.06
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 92.83
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 86.06
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=99.82  E-value=5.5e-21  Score=188.85  Aligned_cols=124  Identities=23%  Similarity=0.321  Sum_probs=103.2

Q ss_pred             cCccchhhhhhhhhcCCCCccccchhHHhhhc--cchhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceee
Q psy8462         135 NNSNQIHLHSDSARADKPTDISFDIPKVQKLT--PGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRM  212 (271)
Q Consensus       135 r~ssai~vv~e~~r~~~~~~l~~~i~~i~~L~--~~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKl  212 (271)
                      ...|+.||++|+.|+.++.+++..-+   ...  ++...|+.+|+++|.+|+++||||||++|.|+++|++ .|++||||
T Consensus       382 l~~RA~HVv~E~~Rv~~~~~al~~~~---~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~Garl  457 (520)
T 3v2u_C          382 LYQRAKHVYSESLRVLKALKMMTSAT---FHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRL  457 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSS---CCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC---cccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEE
Confidence            34588899999999877554432100   000  1234479999999999999999999999999999999 89999999


Q ss_pred             ecCCCceEEEEEe---cCCCHHHHHHHHHHhcccCC---------CCeEEEEecCCCeEEEe
Q psy8462         213 TGGGFGGCAIALV---HTDHVNDIIAKVKAHCVSNP---------TPTFFVSDAYQGATHVS  262 (271)
Q Consensus       213 tGaG~GG~viaLv---~~~~~~~v~eal~~~y~~~~---------~~~~~~~~p~~Ga~~~~  262 (271)
                      ||||||||+|+||   +++.+++++++|.+.|+++.         .+.+|+|+|++||+++.
T Consensus       458 TGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~GA~i~~  519 (520)
T 3v2u_C          458 TGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE  519 (520)
T ss_dssp             CSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred             ecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCCCceEEee
Confidence            9999999999999   88999999999999998653         36799999999999874
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 3e-19
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 7e-18
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 3e-14
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 6e-11
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 8e-10
d1k47a2135 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM 0.003
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 3e-19
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 185 DDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVHTDHVNDIIAKVKAHCVSN 244
           DDYEVSC ELD +   A ++PGV G RMTGGGFGGC + L+        +  ++ H    
Sbjct: 100 DDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEH--YG 157

Query: 245 PTPTFFVSDAYQGATHVSL 263
            T TF++S A  GA  + L
Sbjct: 158 GTATFYLSQAADGAKVLCL 176
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.9
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.9
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.8
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.74
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.56
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 96.86
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 96.05
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 90.79
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-25  Score=189.51  Aligned_cols=117  Identities=31%  Similarity=0.569  Sum_probs=102.1

Q ss_pred             ccchhhhhhhhhcCCCCccccchhHHhhhccchhhHHhhHHHHHhhhcccccCCchhHHHHHHHHHcCCCCcceeeecCC
Q psy8462         137 SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG  216 (271)
Q Consensus       137 ssai~vv~e~~r~~~~~~l~~~i~~i~~L~~~a~~lg~~l~~~g~lL~~~~~VS~peiD~Lv~~A~~~~GalGaKltGaG  216 (271)
                      .|+.|++.|+.|+.++.+++..        .+...|+.+|+++|.+|+++|+||||++|.|+++|++..|++||||||||
T Consensus        60 ~Ra~Hv~~E~~Rv~~~~~al~~--------~d~~~lg~Lm~~sh~sL~~~~~vS~peld~lv~~a~~~~G~lGaRltGaG  131 (176)
T d1wuua2          60 RRARHVVGEIRRTAQAAAALRR--------GDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGG  131 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSC
T ss_pred             HHHHHHHHHHHhhHHHHHHhhc--------cCHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHhcCCCceeeeccCC
Confidence            3678999999998775443321        22345899999999999999999999999999999995699999999999


Q ss_pred             CceEEEEEecCCCHHHHHHHHHHhcccCCCCeEEEEecCCCeEEEec
Q psy8462         217 FGGCAIALVHTDHVNDIIAKVKAHCVSNPTPTFFVSDAYQGATHVSL  263 (271)
Q Consensus       217 ~GG~viaLv~~~~~~~v~eal~~~y~~~~~~~~~~~~p~~Ga~~~~~  263 (271)
                      ||||+|+||+++..+++++++.+.|...  +.+|+++|++||+++.+
T Consensus       132 fGGcviaLv~~~~~~~~~~~~~~~yg~~--~~~~~~~~~~Ga~~i~~  176 (176)
T d1wuua2         132 FGGCTVTLLEASAAPHAMRHIQEHYGGT--ATFYLSQAADGAKVLCL  176 (176)
T ss_dssp             SEEEEEEEEEGGGHHHHHHHHHHHCSSC--CEEEEECCCCCSEECCC
T ss_pred             CCcEEEEEechhhHHHHHHHHHHHhCCC--CCEEEEecCCCceEccC
Confidence            9999999999999999999999988654  78999999999999864
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure